BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= P42898
(656 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
6FCX-A nrPDB 1259 0.0
3APY-A nrPDB 199 3e-51
6FNU-A nrPDB 195 5e-50
3FSU-A nrPDB 154 2e-37
5UME-A nrPDB 142 7e-34
4XGV-A nrPDB 32 0.86
3NUF-A nrPDB 30 4.9
5YJ7-A nrPDB 29 5.0
6ECA-A nrPDB 29 5.2
>6FCX-A nrPDB
Length = 615
Score = 1259 bits (3259), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 605/608 (99%), Positives = 607/608 (99%)
Query: 37 LDPERHERLREKMRRRLESGDKWFSLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWH 96
+DPERHERLREKMRRRLESGDKWFSLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWH
Sbjct: 1 MDPERHERLREKMRRRLESGDKWFSLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWH 60
Query: 97 PAGDPGSDKETSSMMIASTAVNYCGLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMAL 156
PAGDPGSDKETSSMMIASTAVNYCGLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMAL
Sbjct: 61 PAGDPGSDKETSSMMIASTAVNYCGLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMAL 120
Query: 157 RGDPIGDQWEEEEGGFNYAVDLVKHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKE 216
RGDPIGDQWEEEEGGFNYAVDLVKHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKE
Sbjct: 121 RGDPIGDQWEEEEGGFNYAVDLVKHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKE 180
Query: 217 KVSAGADFIITQLFFEADTFFRFVKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEV 276
KVSAGADFIITQLFFEADTFFRFVKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEV
Sbjct: 181 KVSAGADFIITQLFFEADTFFRFVKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEV 240
Query: 277 PQEIKDVIEPIKDNDAAIRNYGIELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRL 336
PQEIKDVIEPIKDNDAAIRNYGIELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRL
Sbjct: 241 PQEIKDVIEPIKDNDAAIRNYGIELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRL 300
Query: 337 GMWTEDPRRPLPWALSAHPKRREEDVRPIFWASRPKSYIYRTQEWDEFPNGRWGNSSSPA 396
GMWTEDPRRPLPWALSAHPKRREEDVRPIFWASRPKSYIYRTQEWDEFPNGRWGNSSSPA
Sbjct: 301 GMWTEDPRRPLPWALSAHPKRREEDVRPIFWASRPKSYIYRTQEWDEFPNGRWGNSSSPA 360
Query: 397 FGELKDYYLFYLKSKSPKEELLKMWGEELTSEESVFEVFVLYLSGEPNRNGHKVTCLPWN 456
FGELKDYYLFYLKSKSPKEELLKMWGEELTSE SVFEVFVLYLSGEPNRNGHKVTCLPWN
Sbjct: 361 FGELKDYYLFYLKSKSPKEELLKMWGEELTSEASVFEVFVLYLSGEPNRNGHKVTCLPWN 420
Query: 457 DEPLAAETSLLKEELLRVNRQGILTINSQPNINGKPSSDPIVGWGPSGGYVFQKAYLEFF 516
DEPLAAETSLLKEELLRVNRQGILTINSQPNINGKPSSDPIVGWGPSGGYVFQKAYLEFF
Sbjct: 421 DEPLAAETSLLKEELLRVNRQGILTINSQPNINGKPSSDPIVGWGPSGGYVFQKAYLEFF 480
Query: 517 TSRETAEALLQVLKKYELRVNYHLVNVKGENITNAPELQPNAVTWGIFPGREIIQPTVVD 576
TSRETAEALLQVLKKYELRVNYHLVNVKGENITNAPELQPNAVTWGIFPGREIIQPTVVD
Sbjct: 481 TSRETAEALLQVLKKYELRVNYHLVNVKGENITNAPELQPNAVTWGIFPGREIIQPTVVD 540
Query: 577 PVSFMFWKDEAFALWIERWGKLYEEESPSRTIIQYIHDNYFLVNLVDNDFPLDNCLWQVV 636
PVSFMFWKDEAFALWIE+WGKLYEEESPSRTIIQYIHDNYFLVNLVDNDFPLDNCLWQVV
Sbjct: 541 PVSFMFWKDEAFALWIEQWGKLYEEESPSRTIIQYIHDNYFLVNLVDNDFPLDNCLWQVV 600
Query: 637 EDTLELLN 644
EDTLELLN
Sbjct: 601 EDTLELLN 608
>3APY-A nrPDB
Length = 310
Score = 199 bits (506), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 110/282 (39%), Positives = 159/282 (56%), Gaps = 8/282 (2%)
Query: 59 WFSLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDPGSDKETSSMMIASTAVN 118
FS EFFPP+ EG L + + A P ++ +T+ G GS +E S + + +
Sbjct: 14 LFSFEFFPPKDPEGEEALFRTLEELKAFRPAFVSITY---GAMGSTRERS--VAWAQRIQ 68
Query: 119 YCGLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGDPIGDQ--WEEEEGGFNYAV 176
GL + H+T Q +E+ LH+ + G++N++ALRGDP + + GF YA
Sbjct: 69 SLGLNPLAHLTVAGQSRKEVAEVLHRFVESGVENLLALRGDPPRGERVFRPHPEGFRYAA 128
Query: 177 DLVKHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKEKVSAGADFIITQLFFEADTF 236
+LV IR +GD + A YP+GHPE+ S EADL+H K KV AG DF ITQLFF +
Sbjct: 129 ELVALIRERYGDRVSVGGAAYPEGHPESESLEADLRHFKAKVEAGLDFAITQLFFNNAHY 188
Query: 237 FRFVKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEVPQEIKDVIEPIKDNDAAIRN 296
F F++ GI PI+PGI P+ Y LR+ ++ +P + +E +D+ A+
Sbjct: 189 FGFLERARRAGIGIPILPGIMPVTSYRQLRRFTEVCGASIPGPLLAKLERHQDDPKAVLE 248
Query: 297 YGIELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRLGM 338
G+E AV ELL +G V G+HFYTLN+ AT VL+RLG+
Sbjct: 249 IGVEHAVRQVAELLEAG-VEGVHFYTLNKSPATRMVLERLGL 289
>6FNU-A nrPDB
Length = 308
Score = 195 bits (496), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 114/292 (39%), Positives = 163/292 (55%), Gaps = 20/292 (6%)
Query: 59 WFSLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDPGSDKETSSMMIASTAVN 118
+ SLEFFPP+T G NL+ R RM A PL+I VTW G G+ E ++ +AS A
Sbjct: 20 FISLEFFPPKTELGTRNLMERMHRMTALDPLFITVTW---GAGGTTAE-KTLTLASLAQQ 75
Query: 119 YCGLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGD-PIGDQW---EEEEGGFNY 174
+ +H+TC I L + G++NI+ALRGD PIG+ W + E F Y
Sbjct: 76 TLNIPVCMHLTCTNTEKAIIDDALDRCYNAGIRNILALRGDPPIGEDWLDSQSNESPFKY 135
Query: 175 AVDLVKHIRSEFGDYFDICVAGYPKGHPEAGSFEA-------DLKHLKEKVSAGADFIIT 227
AVDLV++I+ +GD F + VA YP+GH E G E DL +LKEKV AGADF+IT
Sbjct: 136 AVDLVRYIKQSYGDKFCVGVAAYPEGHCE-GEAEGHEQDPLKDLVYLKEKVEAGADFVIT 194
Query: 228 QLFFEADTFFRFVKACTD-MGITCPIVPGIFPIQGYHSLRQLVKLSKLEVPQEIKDVIEP 286
QLF++ + F F + + P+ PG+ PI Y + KLS +P I P
Sbjct: 195 QLFYDVEKFLTFEMLFRERISQDLPLFPGLMPINSYLLFHRAAKLSHASIPPAILSRFPP 254
Query: 287 -IKDNDAAIRNYGIELAVSLCQELL--ASGLVPGLHFYTLNREMATTEVLKR 335
I+ +D A+++ G+++ + L QE+ SG + G HFYTLN E A +++ +
Sbjct: 255 EIQSDDNAVKSIGVDILIELIQEIYQRTSGRIKGFHFYTLNLEKAIAQIVSQ 306
>3FSU-A nrPDB
Length = 304
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/300 (33%), Positives = 153/300 (51%), Gaps = 15/300 (5%)
Query: 42 HERLREKMRRRLE--SGDKWFSLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAG 99
H R+ + + L G S +FFPPRT+E L + DR+++ P ++ VT+
Sbjct: 5 HASQRDALNQSLAEVQGQINVSFQFFPPRTSEMEQTLWNSIDRLSSLKPKFVSVTY--GA 62
Query: 100 DPGSDKETSSMMIASTAVNYCGLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGD 159
+ G T S I + GLE H+TC +E+ G+++I+ALRGD
Sbjct: 63 NSGERDRTHS--IIKGIKDRTGLEAAPHLTCIDATPDELRTIARDYWNNGIRHIVALRGD 120
Query: 160 -PIGDQWEEEEGGFNYAVDLVKHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKEKV 218
P G E YA DLV ++ E D FDI VA YP+ HPEA S +ADL +LK KV
Sbjct: 121 LPPGSGKPEM-----YASDLVTLLK-EVAD-FDISVAAYPEVHPEAKSAQADLLNLKRKV 173
Query: 219 SAGADFIITQLFFEADTFFRFVKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEVPQ 278
AGA+ ITQ FF+ +++ RF C GI I+PGI P+ + ++L ++ + +P
Sbjct: 174 DAGANRAITQFFFDVESYLRFRDRCVSAGIDVEIIPGILPVSNFKQAKKLADMTNVRIPA 233
Query: 279 EIKDVIEPIKDNDAAIRNYGIELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRLGM 338
+ + + + D+ + G +A+ + + L G V HFYTLNR + + LG+
Sbjct: 234 WMAQMFDGLDDDAETRKLVGANIAMDMVKILSREG-VKDFHFYTLNRAEMSYAICHTLGV 292
>5UME-A nrPDB
Length = 295
Score = 142 bits (357), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 96/283 (33%), Positives = 141/283 (49%), Gaps = 21/283 (7%)
Query: 61 SLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDPGSDKETSSMMIASTAVNYC 120
S EFFPP+ + L R+ P ++ VT+ + G T ++ A
Sbjct: 27 SFEFFPPKNEKMETLLWDSIHRLKVLKPKFVSVTY--GANSGERDRTHGIVKAIK--QET 82
Query: 121 GLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGDPIGDQWEEEEGGFN----YAV 176
GLE H+T EE+ G++ I+ALRGD E G+ YA
Sbjct: 83 GLEAAPHLTGIDATPEELKQIARDYWDSGIRRIVALRGD--------EPKGYAKKPFYAS 134
Query: 177 DLVKHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKEKVSAGADFIITQLFFEADTF 236
DLV+ +RS D FDI VA YP+ HPEA S +ADL +LK K+ AGA+ +ITQ FF+ + +
Sbjct: 135 DLVELLRS-VAD-FDISVAAYPEVHPEAKSAQADLINLKRKIDAGANHVITQFFFDIENY 192
Query: 237 FRFVKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEVPQEIKDVIEPIKDNDAAIRN 296
RF C +GI IVPGI P+ + L+++ + +++P + + + DND RN
Sbjct: 193 LRFRDRCASIGIDTEIVPGILPVTNFKQLQKMASFTNVKIPAWLVKAYDGL-DNDPTTRN 251
Query: 297 -YGIELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRLGM 338
+A+ + + L G V HFYTLNR T + LG+
Sbjct: 252 LVAASVAMDMVKILSREG-VNDFHFYTLNRSELTYAICHMLGV 293
>4XGV-A nrPDB
Length = 340
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 31 RCSTPGLDPERHERLREKMRRRLESGDKWFS 61
R S PG+D +R L+EK++ +L++ D+ S
Sbjct: 28 RASIPGIDAKRSAELKEKIQTQLDADDQLLS 58
>3NUF-A nrPDB
Length = 119
Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 13/68 (19%)
Query: 272 SKLEVPQEIKDVIEPIKDNDA--AIRNYGIELAVSLCQELLASGLVPGLHFYTLNREMAT 329
+ +E+P E+K +IE D A A+ NY I+LA + +HF L ++ T
Sbjct: 7 ANVELPTEVKAMIEQSSDAQAATALVNYVIKLAAA-----------AEIHFTDLQLQVLT 55
Query: 330 TEVLKRLG 337
+++ LG
Sbjct: 56 NHLIEMLG 63
>5YJ7-A nrPDB
Length = 518
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 262 YHSLRQLVKLSKLEVPQEIKDVIE---PIKDNDAAIRNYGIELAVSLCQELLASGLVPGL 318
YH ++ VKL K + + + + + AI G+E +L EL+A+G+VP +
Sbjct: 83 YHRYKEDVKLMKGMGLKSYRFSVSWSRVLPEGTGAINPKGMEFYQNLTNELIANGIVPTV 142
Query: 319 HFYTLNREMATTEVLKRLGMW 339
Y + E L + G W
Sbjct: 143 TLYHWD----LPEALSKNGGW 159
>6ECA-A nrPDB
Length = 627
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 52 RLESGDKWFSLEFFPPRTAEGAVNLISRFDRMAAGGPLYID 92
R +GD W+S FF P A+G L RFD + ++++
Sbjct: 88 REYTGDFWYSRNFFVPSAAKGKA-LFLRFDAVTHRATIFVN 127
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
6FCX-A nrPDB 1173 0.0
3FSU-A nrPDB 406 e-113
3APY-A nrPDB 383 e-106
5UME-A nrPDB 378 e-105
6FNU-A nrPDB 365 e-101
Sequences not found previously or not previously below threshold:
1EI6-A nrPDB 35 0.12
2PFJ-A nrPDB 33 0.47
3CAE-A nrPDB 32 0.96
1X6V-B nrPDB 31 1.6
3WSY-A nrPDB 31 1.8
2QJF-A nrPDB 31 1.9
3TIX-A nrPDB 31 2.1
1XIQ-A nrPDB 30 2.6
1SM3-L nrPDB 30 3.0
1JN6-A nrPDB 30 3.0
2W1I-A nrPDB 30 3.5
3IO7-A nrPDB 30 3.6
3LOM-A nrPDB 30 4.7
3TRH-A nrPDB 30 5.0
2QHR-L nrPDB 29 7.8
4I6M-A nrPDB 28 8.7
3CHF-A nrPDB 28 9.2
CONVERGED!
>6FCX-A nrPDB
Length = 615
Score = 1173 bits (3034), Expect = 0.0, Method: Composition-based stats.
Identities = 605/608 (99%), Positives = 607/608 (99%)
Query: 37 LDPERHERLREKMRRRLESGDKWFSLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWH 96
+DPERHERLREKMRRRLESGDKWFSLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWH
Sbjct: 1 MDPERHERLREKMRRRLESGDKWFSLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWH 60
Query: 97 PAGDPGSDKETSSMMIASTAVNYCGLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMAL 156
PAGDPGSDKETSSMMIASTAVNYCGLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMAL
Sbjct: 61 PAGDPGSDKETSSMMIASTAVNYCGLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMAL 120
Query: 157 RGDPIGDQWEEEEGGFNYAVDLVKHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKE 216
RGDPIGDQWEEEEGGFNYAVDLVKHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKE
Sbjct: 121 RGDPIGDQWEEEEGGFNYAVDLVKHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKE 180
Query: 217 KVSAGADFIITQLFFEADTFFRFVKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEV 276
KVSAGADFIITQLFFEADTFFRFVKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEV
Sbjct: 181 KVSAGADFIITQLFFEADTFFRFVKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEV 240
Query: 277 PQEIKDVIEPIKDNDAAIRNYGIELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRL 336
PQEIKDVIEPIKDNDAAIRNYGIELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRL
Sbjct: 241 PQEIKDVIEPIKDNDAAIRNYGIELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRL 300
Query: 337 GMWTEDPRRPLPWALSAHPKRREEDVRPIFWASRPKSYIYRTQEWDEFPNGRWGNSSSPA 396
GMWTEDPRRPLPWALSAHPKRREEDVRPIFWASRPKSYIYRTQEWDEFPNGRWGNSSSPA
Sbjct: 301 GMWTEDPRRPLPWALSAHPKRREEDVRPIFWASRPKSYIYRTQEWDEFPNGRWGNSSSPA 360
Query: 397 FGELKDYYLFYLKSKSPKEELLKMWGEELTSEESVFEVFVLYLSGEPNRNGHKVTCLPWN 456
FGELKDYYLFYLKSKSPKEELLKMWGEELTSE SVFEVFVLYLSGEPNRNGHKVTCLPWN
Sbjct: 361 FGELKDYYLFYLKSKSPKEELLKMWGEELTSEASVFEVFVLYLSGEPNRNGHKVTCLPWN 420
Query: 457 DEPLAAETSLLKEELLRVNRQGILTINSQPNINGKPSSDPIVGWGPSGGYVFQKAYLEFF 516
DEPLAAETSLLKEELLRVNRQGILTINSQPNINGKPSSDPIVGWGPSGGYVFQKAYLEFF
Sbjct: 421 DEPLAAETSLLKEELLRVNRQGILTINSQPNINGKPSSDPIVGWGPSGGYVFQKAYLEFF 480
Query: 517 TSRETAEALLQVLKKYELRVNYHLVNVKGENITNAPELQPNAVTWGIFPGREIIQPTVVD 576
TSRETAEALLQVLKKYELRVNYHLVNVKGENITNAPELQPNAVTWGIFPGREIIQPTVVD
Sbjct: 481 TSRETAEALLQVLKKYELRVNYHLVNVKGENITNAPELQPNAVTWGIFPGREIIQPTVVD 540
Query: 577 PVSFMFWKDEAFALWIERWGKLYEEESPSRTIIQYIHDNYFLVNLVDNDFPLDNCLWQVV 636
PVSFMFWKDEAFALWIE+WGKLYEEESPSRTIIQYIHDNYFLVNLVDNDFPLDNCLWQVV
Sbjct: 541 PVSFMFWKDEAFALWIEQWGKLYEEESPSRTIIQYIHDNYFLVNLVDNDFPLDNCLWQVV 600
Query: 637 EDTLELLN 644
EDTLELLN
Sbjct: 601 EDTLELLN 608
>3FSU-A nrPDB
Length = 304
Score = 406 bits (1044), Expect = e-113, Method: Composition-based stats.
Identities = 100/300 (33%), Positives = 153/300 (51%), Gaps = 15/300 (5%)
Query: 42 HERLREKMRRRLE--SGDKWFSLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAG 99
H R+ + + L G S +FFPPRT+E L + DR+++ P ++ VT+
Sbjct: 5 HASQRDALNQSLAEVQGQINVSFQFFPPRTSEMEQTLWNSIDRLSSLKPKFVSVTY--GA 62
Query: 100 DPGSDKETSSMMIASTAVNYCGLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGD 159
+ G T S I + GLE H+TC +E+ G+++I+ALRGD
Sbjct: 63 NSGERDRTHS--IIKGIKDRTGLEAAPHLTCIDATPDELRTIARDYWNNGIRHIVALRGD 120
Query: 160 -PIGDQWEEEEGGFNYAVDLVKHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKEKV 218
P G E YA DLV ++ E D FDI VA YP+ HPEA S +ADL +LK KV
Sbjct: 121 LPPGSGKPEM-----YASDLVTLLK-EVAD-FDISVAAYPEVHPEAKSAQADLLNLKRKV 173
Query: 219 SAGADFIITQLFFEADTFFRFVKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEVPQ 278
AGA+ ITQ FF+ +++ RF C GI I+PGI P+ + ++L ++ + +P
Sbjct: 174 DAGANRAITQFFFDVESYLRFRDRCVSAGIDVEIIPGILPVSNFKQAKKLADMTNVRIPA 233
Query: 279 EIKDVIEPIKDNDAAIRNYGIELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRLGM 338
+ + + + D+ + G +A+ + + L G V HFYTLNR + + LG+
Sbjct: 234 WMAQMFDGLDDDAETRKLVGANIAMDMVKILSREG-VKDFHFYTLNRAEMSYAICHTLGV 292
>3APY-A nrPDB
Length = 310
Score = 383 bits (983), Expect = e-106, Method: Composition-based stats.
Identities = 110/282 (39%), Positives = 159/282 (56%), Gaps = 8/282 (2%)
Query: 59 WFSLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDPGSDKETSSMMIASTAVN 118
FS EFFPP+ EG L + + A P ++ +T+ G GS +E S + + +
Sbjct: 14 LFSFEFFPPKDPEGEEALFRTLEELKAFRPAFVSITY---GAMGSTRERS--VAWAQRIQ 68
Query: 119 YCGLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGDPIGDQ--WEEEEGGFNYAV 176
GL + H+T Q +E+ LH+ + G++N++ALRGDP + + GF YA
Sbjct: 69 SLGLNPLAHLTVAGQSRKEVAEVLHRFVESGVENLLALRGDPPRGERVFRPHPEGFRYAA 128
Query: 177 DLVKHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKEKVSAGADFIITQLFFEADTF 236
+LV IR +GD + A YP+GHPE+ S EADL+H K KV AG DF ITQLFF +
Sbjct: 129 ELVALIRERYGDRVSVGGAAYPEGHPESESLEADLRHFKAKVEAGLDFAITQLFFNNAHY 188
Query: 237 FRFVKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEVPQEIKDVIEPIKDNDAAIRN 296
F F++ GI PI+PGI P+ Y LR+ ++ +P + +E +D+ A+
Sbjct: 189 FGFLERARRAGIGIPILPGIMPVTSYRQLRRFTEVCGASIPGPLLAKLERHQDDPKAVLE 248
Query: 297 YGIELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRLGM 338
G+E AV ELL +G V G+HFYTLN+ AT VL+RLG+
Sbjct: 249 IGVEHAVRQVAELLEAG-VEGVHFYTLNKSPATRMVLERLGL 289
>5UME-A nrPDB
Length = 295
Score = 378 bits (971), Expect = e-105, Method: Composition-based stats.
Identities = 90/299 (30%), Positives = 144/299 (48%), Gaps = 13/299 (4%)
Query: 42 HERLREKMRRRLE--SGDKWFSLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAG 99
+ + + + + + + S EFFPP+ + L R+ P ++ VT+
Sbjct: 6 YAKEIDTLNQHIADFNKKINVSFEFFPPKNEKMETLLWDSIHRLKVLKPKFVSVTY--GA 63
Query: 100 DPGSDKETSSMMIASTAVNYCGLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGD 159
+ G T ++ A GLE H+T EE+ G++ I+ALRGD
Sbjct: 64 NSGERDRTHGIVKA--IKQETGLEAAPHLTGIDATPEELKQIARDYWDSGIRRIVALRGD 121
Query: 160 PIGDQWEEEEGGFNYAVDLVKHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKEKVS 219
+ F YA DLV+ +RS D FDI VA YP+ HPEA S +ADL +LK K+
Sbjct: 122 EPKGYAK---KPF-YASDLVELLRS-VAD-FDISVAAYPEVHPEAKSAQADLINLKRKID 175
Query: 220 AGADFIITQLFFEADTFFRFVKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEVPQE 279
AGA+ +ITQ FF+ + + RF C +GI IVPGI P+ + L+++ + +++P
Sbjct: 176 AGANHVITQFFFDIENYLRFRDRCASIGIDTEIVPGILPVTNFKQLQKMASFTNVKIPAW 235
Query: 280 IKDVIEPIKDNDAAIRNYGIELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRLGM 338
+ + + ++ +A+ + + L G V HFYTLNR T + LG+
Sbjct: 236 LVKAYDGLDNDPTTRNLVAASVAMDMVKILSREG-VNDFHFYTLNRSELTYAICHMLGV 293
>6FNU-A nrPDB
Length = 308
Score = 365 bits (938), Expect = e-101, Method: Composition-based stats.
Identities = 113/297 (38%), Positives = 162/297 (54%), Gaps = 20/297 (6%)
Query: 54 ESGDKWFSLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDPGSDKETSSMMIA 113
+ SLEFFPP+T G NL+ R RM A PL+I VTW G G+ E ++ +A
Sbjct: 15 ARASPFISLEFFPPKTELGTRNLMERMHRMTALDPLFITVTW---GAGGTTAE-KTLTLA 70
Query: 114 STAVNYCGLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGDPI-GDQW---EEEE 169
S A + +H+TC I L + G++NI+ALRGDP G+ W + E
Sbjct: 71 SLAQQTLNIPVCMHLTCTNTEKAIIDDALDRCYNAGIRNILALRGDPPIGEDWLDSQSNE 130
Query: 170 GGFNYAVDLVKHIRSEFGDYFDICVAGYPKGHPEAGSFEA-------DLKHLKEKVSAGA 222
F YAVDLV++I+ +GD F + VA YP+GH E G E DL +LKEKV AGA
Sbjct: 131 SPFKYAVDLVRYIKQSYGDKFCVGVAAYPEGHCE-GEAEGHEQDPLKDLVYLKEKVEAGA 189
Query: 223 DFIITQLFFEADTFFRFVKACTD-MGITCPIVPGIFPIQGYHSLRQLVKLSKLEVPQEIK 281
DF+ITQLF++ + F F + + P+ PG+ PI Y + KLS +P I
Sbjct: 190 DFVITQLFYDVEKFLTFEMLFRERISQDLPLFPGLMPINSYLLFHRAAKLSHASIPPAIL 249
Query: 282 DVIEP-IKDNDAAIRNYGIELAVSLCQELL--ASGLVPGLHFYTLNREMATTEVLKR 335
P I+ +D A+++ G+++ + L QE+ SG + G HFYTLN E A +++ +
Sbjct: 250 SRFPPEIQSDDNAVKSIGVDILIELIQEIYQRTSGRIKGFHFYTLNLEKAIAQIVSQ 306
>1EI6-A nrPDB
Length = 406
Score = 34.6 bits (78), Expect = 0.12, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 147 QLGLKNIMALRGDPIGDQWEEEEGGFNYAVDLVKHIRSEFGDYFDICVAGYPK-----GH 201
+ G++NI+A G P+ + + F +A L + +E D+ + Y + G
Sbjct: 153 EHGVENILARVGMPVPSVYSADLSEFVFAAGL-SLLTNERPDFMYLSTTDYVQHKHAPGT 211
Query: 202 PEAGSFEADL-KHLKEKVSAGADFIIT 227
PEA +F A + + K GA IT
Sbjct: 212 PEANAFYAMMDSYFKRYHEQGAIVAIT 238
>2PFJ-A nrPDB
Length = 149
Score = 32.7 bits (73), Expect = 0.47, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 319 HFYTLNREMATTEVLKRLGMWTEDPRRPLPWALSAHPKRREEDVRPIFWASRPKSYIYRT 378
H YT + + ++ G+W D R+ HP E D+R +F +SR K Y
Sbjct: 50 HTYTPDFLLPNGIFVETAGLWESDDRKKHLLIREQHP---ELDIRIVFSSSRTKLYKGSP 106
Query: 379 QEWDEF 384
+ EF
Sbjct: 107 TSYGEF 112
>3CAE-A nrPDB
Length = 132
Score = 31.9 bits (71), Expect = 0.96, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 319 HFYTLNREMATTEVLKRLGMWTEDPRRPLPWALSAHPKRREEDVRPIFWASRPKSYIYRT 378
H YT + + ++ G+W D R+ HP E D+R +F +SR K Y
Sbjct: 37 HTYTPDFLLPNGIFVETKGLWESDDRKKHLLIREQHP---ELDIRIVFSSSRTKLYKGSP 93
Query: 379 QEWDEF 384
+ EF
Sbjct: 94 TSYGEF 99
>1X6V-B nrPDB
Length = 630
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 332 VLKRLGMWTEDPRRPLPWALSAHPKRREEDV 362
+L LG WT+D PL W + H EE V
Sbjct: 450 LLHPLGGWTKDDDVPLMWRMKQHAAVLEEGV 480
>3WSY-A nrPDB
Length = 678
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 491 KPSSDPIVGWGPSG-GYVFQKAYLEFFTSRETAEALLQVLKKYELRVNY 538
KP++ I PSG VF+ +FF SRE E +L+ ++ ++LR Y
Sbjct: 176 KPNTIYIERHEPSGYSTVFRST--DFFQSRENQEVILEEVRDFQLRDKY 222
>2QJF-A nrPDB
Length = 405
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 332 VLKRLGMWTEDPRRPLPWALSAHPKRREEDV 362
+L LG WT+D PL W + H EE V
Sbjct: 231 LLHPLGGWTKDDDVPLMWRMKQHAAVLEEGV 261
>3TIX-A nrPDB
Length = 207
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 38/116 (32%)
Query: 21 SGSESSKDSSRCSTPGLDPERHERLREKMRRRLESGDKWFSLEFFPPRTAEGAVNLISRF 80
+GS + ++ + P + PE ++ S + +F ++ P +
Sbjct: 32 TGSLQDSEVNQEAKPEVKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQG 91
Query: 81 DRMAAGGPLYIDVTWHPAGDPGSDKETSSMMIASTAVNYCGLETILHMTCCRQRLE 136
M + LY + P + +I + GL ++ + C E
Sbjct: 92 KEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGLPSLPFLACISDFPE 147
>1XIQ-A nrPDB
Length = 157
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 399 ELKDYYLFYLKSKSPKEELLKMWGEELTSEESVFEVFVLYLSGEP 443
E K Y L +K +P EE+LK +EL S++ F+ V Y+S P
Sbjct: 34 EKKGYKLIAIKMLNPTEEILKEHYKEL-SDQPFFKNLVAYISKGP 77
>1SM3-L nrPDB
Length = 215
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 61 SLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDP 101
S+ FPP + E N + + P + V W G P
Sbjct: 117 SVTLFPPSSEELETNKATLVCTITDFYPGVVTVDWKVDGTP 157
>1JN6-A nrPDB
Length = 210
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 61 SLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDP 101
S+ FPP + E N + + P + V W G P
Sbjct: 117 SVTLFPPSSEELETNKATLVCTITDFYPGVVTVDWKVDGTP 157
>2W1I-A nrPDB
Length = 326
Score = 30.0 bits (66), Expect = 3.5, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Query: 356 KRREEDVRPIFWASRPKSYIYRTQEWDEFPNGRWGNSSSPAFGE-LKDYYLFYLKSKSPK 414
K +E PIFW + P+S T+ + W +FG L + + + KSKSP
Sbjct: 203 KVKEPGESPIFWYA-PESL---TESKFSVASDVW------SFGVVLYELFTYIEKSKSPP 252
Query: 415 EELLKMWGEELTSEESVFEVFVL 437
E ++M G + + VF + L
Sbjct: 253 AEFMRMIGNDKQGQMIVFHLIEL 275
>3IO7-A nrPDB
Length = 313
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Query: 356 KRREEDVRPIFWASRPKSYIYRTQEWDEFPNGRWGNSSSPAFGE-LKDYYLFYLKSKSPK 414
K +E PIFW + P+S T+ + W +FG L + + + KSKSP
Sbjct: 190 KVKEPGESPIFWYA-PESL---TESKFSVASDVW------SFGVVLYELFTYIEKSKSPP 239
Query: 415 EELLKMWGEELTSEESVFEVFVL 437
E ++M G + + VF + L
Sbjct: 240 AEFMRMIGNDKQGQMIVFHLIEL 262
>3LOM-A nrPDB
Length = 313
Score = 29.6 bits (65), Expect = 4.7, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 527 QVLKKYELRVNYHLVNVKGENITNAPELQPNAVTWGIFPGREIIQPTVV 575
QV+ KY R +L + E I AP+++ +A+ + +F G + I+P +V
Sbjct: 11 QVIDKYTQRHELYLEQLLNEIIIPAPQIR-SALHYALFSGGKRIRPILV 58
>3TRH-A nrPDB
Length = 169
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 20/49 (40%)
Query: 101 PGSDKETSSMMIASTAVNYCGLETILHMTCCRQRLEEITGHLHKAKQLG 149
GSD + S+M A T + G+ H+ + +E + A G
Sbjct: 13 MGSDSDLSTMETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRG 61
>2QHR-L nrPDB
Length = 218
Score = 28.9 bits (63), Expect = 7.8, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 61 SLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDP 101
+L FPP + E N + ++ P + V W G P
Sbjct: 123 TLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKANGTP 163
>4I6M-A nrPDB
Length = 477
Score = 28.5 bits (62), Expect = 8.7, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 423 EELTSEESVFEVFVLYLSGEPNRNGHKVTCL------PWNDEPLAAETSLLKEELLRVNR 476
+E E +F + + + RNG +V L P+N + L + L + L+V+
Sbjct: 40 DEGGEAEFIFGTYNMIDAAAEKRNGDEVYTLVDSQGLPYNWDALEMQWRYLYDTQLKVSP 99
Query: 477 QGILTINSQPNINGKP 492
+ + + + P NGKP
Sbjct: 100 EELPLVITMPATNGKP 115
>3CHF-A nrPDB
Length = 433
Score = 28.5 bits (62), Expect = 9.2, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 355 PKRREEDVRPIFWASRPKS-YIYRTQEWDE----FPNGRWGNSSSPAFGELKDYYLFYLK 409
P R V F RP++ +Y T W + +P W ++ + +G +K YL +
Sbjct: 65 PVERLTHVLYAFANVRPETGEVYMTDSWADIEKHYPGDSWSDTGNNVYGCIKQLYLLKKQ 124
Query: 410 SKSPK 414
+++ K
Sbjct: 125 NRNLK 129
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.309 0.135 0.404
Lambda K H
0.267 0.0394 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,884,412
Number of Sequences: 36641
Number of extensions: 1263706
Number of successful extensions: 3246
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 3192
Number of HSP's gapped (non-prelim): 37
length of query: 656
length of database: 10,336,785
effective HSP length: 103
effective length of query: 553
effective length of database: 6,562,762
effective search space: 3629207386
effective search space used: 3629207386
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 62 (28.5 bits)