BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P42898 (656 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 6FCX-A nrPDB 1259 0.0 3APY-A nrPDB 199 3e-51 6FNU-A nrPDB 195 5e-50 3FSU-A nrPDB 154 2e-37 5UME-A nrPDB 142 7e-34 4XGV-A nrPDB 32 0.86 3NUF-A nrPDB 30 4.9 5YJ7-A nrPDB 29 5.0 6ECA-A nrPDB 29 5.2 >6FCX-A nrPDB Length = 615 Score = 1259 bits (3259), Expect = 0.0, Method: Compositional matrix adjust. Identities = 605/608 (99%), Positives = 607/608 (99%) Query: 37 LDPERHERLREKMRRRLESGDKWFSLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWH 96 +DPERHERLREKMRRRLESGDKWFSLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWH Sbjct: 1 MDPERHERLREKMRRRLESGDKWFSLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWH 60 Query: 97 PAGDPGSDKETSSMMIASTAVNYCGLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMAL 156 PAGDPGSDKETSSMMIASTAVNYCGLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMAL Sbjct: 61 PAGDPGSDKETSSMMIASTAVNYCGLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMAL 120 Query: 157 RGDPIGDQWEEEEGGFNYAVDLVKHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKE 216 RGDPIGDQWEEEEGGFNYAVDLVKHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKE Sbjct: 121 RGDPIGDQWEEEEGGFNYAVDLVKHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKE 180 Query: 217 KVSAGADFIITQLFFEADTFFRFVKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEV 276 KVSAGADFIITQLFFEADTFFRFVKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEV Sbjct: 181 KVSAGADFIITQLFFEADTFFRFVKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEV 240 Query: 277 PQEIKDVIEPIKDNDAAIRNYGIELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRL 336 PQEIKDVIEPIKDNDAAIRNYGIELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRL Sbjct: 241 PQEIKDVIEPIKDNDAAIRNYGIELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRL 300 Query: 337 GMWTEDPRRPLPWALSAHPKRREEDVRPIFWASRPKSYIYRTQEWDEFPNGRWGNSSSPA 396 GMWTEDPRRPLPWALSAHPKRREEDVRPIFWASRPKSYIYRTQEWDEFPNGRWGNSSSPA Sbjct: 301 GMWTEDPRRPLPWALSAHPKRREEDVRPIFWASRPKSYIYRTQEWDEFPNGRWGNSSSPA 360 Query: 397 FGELKDYYLFYLKSKSPKEELLKMWGEELTSEESVFEVFVLYLSGEPNRNGHKVTCLPWN 456 FGELKDYYLFYLKSKSPKEELLKMWGEELTSE SVFEVFVLYLSGEPNRNGHKVTCLPWN Sbjct: 361 FGELKDYYLFYLKSKSPKEELLKMWGEELTSEASVFEVFVLYLSGEPNRNGHKVTCLPWN 420 Query: 457 DEPLAAETSLLKEELLRVNRQGILTINSQPNINGKPSSDPIVGWGPSGGYVFQKAYLEFF 516 DEPLAAETSLLKEELLRVNRQGILTINSQPNINGKPSSDPIVGWGPSGGYVFQKAYLEFF Sbjct: 421 DEPLAAETSLLKEELLRVNRQGILTINSQPNINGKPSSDPIVGWGPSGGYVFQKAYLEFF 480 Query: 517 TSRETAEALLQVLKKYELRVNYHLVNVKGENITNAPELQPNAVTWGIFPGREIIQPTVVD 576 TSRETAEALLQVLKKYELRVNYHLVNVKGENITNAPELQPNAVTWGIFPGREIIQPTVVD Sbjct: 481 TSRETAEALLQVLKKYELRVNYHLVNVKGENITNAPELQPNAVTWGIFPGREIIQPTVVD 540 Query: 577 PVSFMFWKDEAFALWIERWGKLYEEESPSRTIIQYIHDNYFLVNLVDNDFPLDNCLWQVV 636 PVSFMFWKDEAFALWIE+WGKLYEEESPSRTIIQYIHDNYFLVNLVDNDFPLDNCLWQVV Sbjct: 541 PVSFMFWKDEAFALWIEQWGKLYEEESPSRTIIQYIHDNYFLVNLVDNDFPLDNCLWQVV 600 Query: 637 EDTLELLN 644 EDTLELLN Sbjct: 601 EDTLELLN 608 >3APY-A nrPDB Length = 310 Score = 199 bits (506), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 110/282 (39%), Positives = 159/282 (56%), Gaps = 8/282 (2%) Query: 59 WFSLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDPGSDKETSSMMIASTAVN 118 FS EFFPP+ EG L + + A P ++ +T+ G GS +E S + + + Sbjct: 14 LFSFEFFPPKDPEGEEALFRTLEELKAFRPAFVSITY---GAMGSTRERS--VAWAQRIQ 68 Query: 119 YCGLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGDPIGDQ--WEEEEGGFNYAV 176 GL + H+T Q +E+ LH+ + G++N++ALRGDP + + GF YA Sbjct: 69 SLGLNPLAHLTVAGQSRKEVAEVLHRFVESGVENLLALRGDPPRGERVFRPHPEGFRYAA 128 Query: 177 DLVKHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKEKVSAGADFIITQLFFEADTF 236 +LV IR +GD + A YP+GHPE+ S EADL+H K KV AG DF ITQLFF + Sbjct: 129 ELVALIRERYGDRVSVGGAAYPEGHPESESLEADLRHFKAKVEAGLDFAITQLFFNNAHY 188 Query: 237 FRFVKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEVPQEIKDVIEPIKDNDAAIRN 296 F F++ GI PI+PGI P+ Y LR+ ++ +P + +E +D+ A+ Sbjct: 189 FGFLERARRAGIGIPILPGIMPVTSYRQLRRFTEVCGASIPGPLLAKLERHQDDPKAVLE 248 Query: 297 YGIELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRLGM 338 G+E AV ELL +G V G+HFYTLN+ AT VL+RLG+ Sbjct: 249 IGVEHAVRQVAELLEAG-VEGVHFYTLNKSPATRMVLERLGL 289 >6FNU-A nrPDB Length = 308 Score = 195 bits (496), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 114/292 (39%), Positives = 163/292 (55%), Gaps = 20/292 (6%) Query: 59 WFSLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDPGSDKETSSMMIASTAVN 118 + SLEFFPP+T G NL+ R RM A PL+I VTW G G+ E ++ +AS A Sbjct: 20 FISLEFFPPKTELGTRNLMERMHRMTALDPLFITVTW---GAGGTTAE-KTLTLASLAQQ 75 Query: 119 YCGLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGD-PIGDQW---EEEEGGFNY 174 + +H+TC I L + G++NI+ALRGD PIG+ W + E F Y Sbjct: 76 TLNIPVCMHLTCTNTEKAIIDDALDRCYNAGIRNILALRGDPPIGEDWLDSQSNESPFKY 135 Query: 175 AVDLVKHIRSEFGDYFDICVAGYPKGHPEAGSFEA-------DLKHLKEKVSAGADFIIT 227 AVDLV++I+ +GD F + VA YP+GH E G E DL +LKEKV AGADF+IT Sbjct: 136 AVDLVRYIKQSYGDKFCVGVAAYPEGHCE-GEAEGHEQDPLKDLVYLKEKVEAGADFVIT 194 Query: 228 QLFFEADTFFRFVKACTD-MGITCPIVPGIFPIQGYHSLRQLVKLSKLEVPQEIKDVIEP 286 QLF++ + F F + + P+ PG+ PI Y + KLS +P I P Sbjct: 195 QLFYDVEKFLTFEMLFRERISQDLPLFPGLMPINSYLLFHRAAKLSHASIPPAILSRFPP 254 Query: 287 -IKDNDAAIRNYGIELAVSLCQELL--ASGLVPGLHFYTLNREMATTEVLKR 335 I+ +D A+++ G+++ + L QE+ SG + G HFYTLN E A +++ + Sbjct: 255 EIQSDDNAVKSIGVDILIELIQEIYQRTSGRIKGFHFYTLNLEKAIAQIVSQ 306 >3FSU-A nrPDB Length = 304 Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 100/300 (33%), Positives = 153/300 (51%), Gaps = 15/300 (5%) Query: 42 HERLREKMRRRLE--SGDKWFSLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAG 99 H R+ + + L G S +FFPPRT+E L + DR+++ P ++ VT+ Sbjct: 5 HASQRDALNQSLAEVQGQINVSFQFFPPRTSEMEQTLWNSIDRLSSLKPKFVSVTY--GA 62 Query: 100 DPGSDKETSSMMIASTAVNYCGLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGD 159 + G T S I + GLE H+TC +E+ G+++I+ALRGD Sbjct: 63 NSGERDRTHS--IIKGIKDRTGLEAAPHLTCIDATPDELRTIARDYWNNGIRHIVALRGD 120 Query: 160 -PIGDQWEEEEGGFNYAVDLVKHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKEKV 218 P G E YA DLV ++ E D FDI VA YP+ HPEA S +ADL +LK KV Sbjct: 121 LPPGSGKPEM-----YASDLVTLLK-EVAD-FDISVAAYPEVHPEAKSAQADLLNLKRKV 173 Query: 219 SAGADFIITQLFFEADTFFRFVKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEVPQ 278 AGA+ ITQ FF+ +++ RF C GI I+PGI P+ + ++L ++ + +P Sbjct: 174 DAGANRAITQFFFDVESYLRFRDRCVSAGIDVEIIPGILPVSNFKQAKKLADMTNVRIPA 233 Query: 279 EIKDVIEPIKDNDAAIRNYGIELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRLGM 338 + + + + D+ + G +A+ + + L G V HFYTLNR + + LG+ Sbjct: 234 WMAQMFDGLDDDAETRKLVGANIAMDMVKILSREG-VKDFHFYTLNRAEMSYAICHTLGV 292 >5UME-A nrPDB Length = 295 Score = 142 bits (357), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 96/283 (33%), Positives = 141/283 (49%), Gaps = 21/283 (7%) Query: 61 SLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDPGSDKETSSMMIASTAVNYC 120 S EFFPP+ + L R+ P ++ VT+ + G T ++ A Sbjct: 27 SFEFFPPKNEKMETLLWDSIHRLKVLKPKFVSVTY--GANSGERDRTHGIVKAIK--QET 82 Query: 121 GLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGDPIGDQWEEEEGGFN----YAV 176 GLE H+T EE+ G++ I+ALRGD E G+ YA Sbjct: 83 GLEAAPHLTGIDATPEELKQIARDYWDSGIRRIVALRGD--------EPKGYAKKPFYAS 134 Query: 177 DLVKHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKEKVSAGADFIITQLFFEADTF 236 DLV+ +RS D FDI VA YP+ HPEA S +ADL +LK K+ AGA+ +ITQ FF+ + + Sbjct: 135 DLVELLRS-VAD-FDISVAAYPEVHPEAKSAQADLINLKRKIDAGANHVITQFFFDIENY 192 Query: 237 FRFVKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEVPQEIKDVIEPIKDNDAAIRN 296 RF C +GI IVPGI P+ + L+++ + +++P + + + DND RN Sbjct: 193 LRFRDRCASIGIDTEIVPGILPVTNFKQLQKMASFTNVKIPAWLVKAYDGL-DNDPTTRN 251 Query: 297 -YGIELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRLGM 338 +A+ + + L G V HFYTLNR T + LG+ Sbjct: 252 LVAASVAMDMVKILSREG-VNDFHFYTLNRSELTYAICHMLGV 293 >4XGV-A nrPDB Length = 340 Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust. Identities = 12/31 (38%), Positives = 21/31 (67%) Query: 31 RCSTPGLDPERHERLREKMRRRLESGDKWFS 61 R S PG+D +R L+EK++ +L++ D+ S Sbjct: 28 RASIPGIDAKRSAELKEKIQTQLDADDQLLS 58 >3NUF-A nrPDB Length = 119 Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 13/68 (19%) Query: 272 SKLEVPQEIKDVIEPIKDNDA--AIRNYGIELAVSLCQELLASGLVPGLHFYTLNREMAT 329 + +E+P E+K +IE D A A+ NY I+LA + +HF L ++ T Sbjct: 7 ANVELPTEVKAMIEQSSDAQAATALVNYVIKLAAA-----------AEIHFTDLQLQVLT 55 Query: 330 TEVLKRLG 337 +++ LG Sbjct: 56 NHLIEMLG 63 >5YJ7-A nrPDB Length = 518 Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust. Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 7/81 (8%) Query: 262 YHSLRQLVKLSKLEVPQEIKDVIE---PIKDNDAAIRNYGIELAVSLCQELLASGLVPGL 318 YH ++ VKL K + + + + + AI G+E +L EL+A+G+VP + Sbjct: 83 YHRYKEDVKLMKGMGLKSYRFSVSWSRVLPEGTGAINPKGMEFYQNLTNELIANGIVPTV 142 Query: 319 HFYTLNREMATTEVLKRLGMW 339 Y + E L + G W Sbjct: 143 TLYHWD----LPEALSKNGGW 159 >6ECA-A nrPDB Length = 627 Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust. Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Query: 52 RLESGDKWFSLEFFPPRTAEGAVNLISRFDRMAAGGPLYID 92 R +GD W+S FF P A+G L RFD + ++++ Sbjct: 88 REYTGDFWYSRNFFVPSAAKGKA-LFLRFDAVTHRATIFVN 127 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 6FCX-A nrPDB 1173 0.0 3FSU-A nrPDB 406 e-113 3APY-A nrPDB 383 e-106 5UME-A nrPDB 378 e-105 6FNU-A nrPDB 365 e-101 Sequences not found previously or not previously below threshold: 1EI6-A nrPDB 35 0.12 2PFJ-A nrPDB 33 0.47 3CAE-A nrPDB 32 0.96 1X6V-B nrPDB 31 1.6 3WSY-A nrPDB 31 1.8 2QJF-A nrPDB 31 1.9 3TIX-A nrPDB 31 2.1 1XIQ-A nrPDB 30 2.6 1SM3-L nrPDB 30 3.0 1JN6-A nrPDB 30 3.0 2W1I-A nrPDB 30 3.5 3IO7-A nrPDB 30 3.6 3LOM-A nrPDB 30 4.7 3TRH-A nrPDB 30 5.0 2QHR-L nrPDB 29 7.8 4I6M-A nrPDB 28 8.7 3CHF-A nrPDB 28 9.2 CONVERGED! >6FCX-A nrPDB Length = 615 Score = 1173 bits (3034), Expect = 0.0, Method: Composition-based stats. Identities = 605/608 (99%), Positives = 607/608 (99%) Query: 37 LDPERHERLREKMRRRLESGDKWFSLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWH 96 +DPERHERLREKMRRRLESGDKWFSLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWH Sbjct: 1 MDPERHERLREKMRRRLESGDKWFSLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWH 60 Query: 97 PAGDPGSDKETSSMMIASTAVNYCGLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMAL 156 PAGDPGSDKETSSMMIASTAVNYCGLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMAL Sbjct: 61 PAGDPGSDKETSSMMIASTAVNYCGLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMAL 120 Query: 157 RGDPIGDQWEEEEGGFNYAVDLVKHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKE 216 RGDPIGDQWEEEEGGFNYAVDLVKHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKE Sbjct: 121 RGDPIGDQWEEEEGGFNYAVDLVKHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKE 180 Query: 217 KVSAGADFIITQLFFEADTFFRFVKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEV 276 KVSAGADFIITQLFFEADTFFRFVKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEV Sbjct: 181 KVSAGADFIITQLFFEADTFFRFVKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEV 240 Query: 277 PQEIKDVIEPIKDNDAAIRNYGIELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRL 336 PQEIKDVIEPIKDNDAAIRNYGIELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRL Sbjct: 241 PQEIKDVIEPIKDNDAAIRNYGIELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRL 300 Query: 337 GMWTEDPRRPLPWALSAHPKRREEDVRPIFWASRPKSYIYRTQEWDEFPNGRWGNSSSPA 396 GMWTEDPRRPLPWALSAHPKRREEDVRPIFWASRPKSYIYRTQEWDEFPNGRWGNSSSPA Sbjct: 301 GMWTEDPRRPLPWALSAHPKRREEDVRPIFWASRPKSYIYRTQEWDEFPNGRWGNSSSPA 360 Query: 397 FGELKDYYLFYLKSKSPKEELLKMWGEELTSEESVFEVFVLYLSGEPNRNGHKVTCLPWN 456 FGELKDYYLFYLKSKSPKEELLKMWGEELTSE SVFEVFVLYLSGEPNRNGHKVTCLPWN Sbjct: 361 FGELKDYYLFYLKSKSPKEELLKMWGEELTSEASVFEVFVLYLSGEPNRNGHKVTCLPWN 420 Query: 457 DEPLAAETSLLKEELLRVNRQGILTINSQPNINGKPSSDPIVGWGPSGGYVFQKAYLEFF 516 DEPLAAETSLLKEELLRVNRQGILTINSQPNINGKPSSDPIVGWGPSGGYVFQKAYLEFF Sbjct: 421 DEPLAAETSLLKEELLRVNRQGILTINSQPNINGKPSSDPIVGWGPSGGYVFQKAYLEFF 480 Query: 517 TSRETAEALLQVLKKYELRVNYHLVNVKGENITNAPELQPNAVTWGIFPGREIIQPTVVD 576 TSRETAEALLQVLKKYELRVNYHLVNVKGENITNAPELQPNAVTWGIFPGREIIQPTVVD Sbjct: 481 TSRETAEALLQVLKKYELRVNYHLVNVKGENITNAPELQPNAVTWGIFPGREIIQPTVVD 540 Query: 577 PVSFMFWKDEAFALWIERWGKLYEEESPSRTIIQYIHDNYFLVNLVDNDFPLDNCLWQVV 636 PVSFMFWKDEAFALWIE+WGKLYEEESPSRTIIQYIHDNYFLVNLVDNDFPLDNCLWQVV Sbjct: 541 PVSFMFWKDEAFALWIEQWGKLYEEESPSRTIIQYIHDNYFLVNLVDNDFPLDNCLWQVV 600 Query: 637 EDTLELLN 644 EDTLELLN Sbjct: 601 EDTLELLN 608 >3FSU-A nrPDB Length = 304 Score = 406 bits (1044), Expect = e-113, Method: Composition-based stats. Identities = 100/300 (33%), Positives = 153/300 (51%), Gaps = 15/300 (5%) Query: 42 HERLREKMRRRLE--SGDKWFSLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAG 99 H R+ + + L G S +FFPPRT+E L + DR+++ P ++ VT+ Sbjct: 5 HASQRDALNQSLAEVQGQINVSFQFFPPRTSEMEQTLWNSIDRLSSLKPKFVSVTY--GA 62 Query: 100 DPGSDKETSSMMIASTAVNYCGLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGD 159 + G T S I + GLE H+TC +E+ G+++I+ALRGD Sbjct: 63 NSGERDRTHS--IIKGIKDRTGLEAAPHLTCIDATPDELRTIARDYWNNGIRHIVALRGD 120 Query: 160 -PIGDQWEEEEGGFNYAVDLVKHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKEKV 218 P G E YA DLV ++ E D FDI VA YP+ HPEA S +ADL +LK KV Sbjct: 121 LPPGSGKPEM-----YASDLVTLLK-EVAD-FDISVAAYPEVHPEAKSAQADLLNLKRKV 173 Query: 219 SAGADFIITQLFFEADTFFRFVKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEVPQ 278 AGA+ ITQ FF+ +++ RF C GI I+PGI P+ + ++L ++ + +P Sbjct: 174 DAGANRAITQFFFDVESYLRFRDRCVSAGIDVEIIPGILPVSNFKQAKKLADMTNVRIPA 233 Query: 279 EIKDVIEPIKDNDAAIRNYGIELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRLGM 338 + + + + D+ + G +A+ + + L G V HFYTLNR + + LG+ Sbjct: 234 WMAQMFDGLDDDAETRKLVGANIAMDMVKILSREG-VKDFHFYTLNRAEMSYAICHTLGV 292 >3APY-A nrPDB Length = 310 Score = 383 bits (983), Expect = e-106, Method: Composition-based stats. Identities = 110/282 (39%), Positives = 159/282 (56%), Gaps = 8/282 (2%) Query: 59 WFSLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDPGSDKETSSMMIASTAVN 118 FS EFFPP+ EG L + + A P ++ +T+ G GS +E S + + + Sbjct: 14 LFSFEFFPPKDPEGEEALFRTLEELKAFRPAFVSITY---GAMGSTRERS--VAWAQRIQ 68 Query: 119 YCGLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGDPIGDQ--WEEEEGGFNYAV 176 GL + H+T Q +E+ LH+ + G++N++ALRGDP + + GF YA Sbjct: 69 SLGLNPLAHLTVAGQSRKEVAEVLHRFVESGVENLLALRGDPPRGERVFRPHPEGFRYAA 128 Query: 177 DLVKHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKEKVSAGADFIITQLFFEADTF 236 +LV IR +GD + A YP+GHPE+ S EADL+H K KV AG DF ITQLFF + Sbjct: 129 ELVALIRERYGDRVSVGGAAYPEGHPESESLEADLRHFKAKVEAGLDFAITQLFFNNAHY 188 Query: 237 FRFVKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEVPQEIKDVIEPIKDNDAAIRN 296 F F++ GI PI+PGI P+ Y LR+ ++ +P + +E +D+ A+ Sbjct: 189 FGFLERARRAGIGIPILPGIMPVTSYRQLRRFTEVCGASIPGPLLAKLERHQDDPKAVLE 248 Query: 297 YGIELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRLGM 338 G+E AV ELL +G V G+HFYTLN+ AT VL+RLG+ Sbjct: 249 IGVEHAVRQVAELLEAG-VEGVHFYTLNKSPATRMVLERLGL 289 >5UME-A nrPDB Length = 295 Score = 378 bits (971), Expect = e-105, Method: Composition-based stats. Identities = 90/299 (30%), Positives = 144/299 (48%), Gaps = 13/299 (4%) Query: 42 HERLREKMRRRLE--SGDKWFSLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAG 99 + + + + + + + S EFFPP+ + L R+ P ++ VT+ Sbjct: 6 YAKEIDTLNQHIADFNKKINVSFEFFPPKNEKMETLLWDSIHRLKVLKPKFVSVTY--GA 63 Query: 100 DPGSDKETSSMMIASTAVNYCGLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGD 159 + G T ++ A GLE H+T EE+ G++ I+ALRGD Sbjct: 64 NSGERDRTHGIVKA--IKQETGLEAAPHLTGIDATPEELKQIARDYWDSGIRRIVALRGD 121 Query: 160 PIGDQWEEEEGGFNYAVDLVKHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKEKVS 219 + F YA DLV+ +RS D FDI VA YP+ HPEA S +ADL +LK K+ Sbjct: 122 EPKGYAK---KPF-YASDLVELLRS-VAD-FDISVAAYPEVHPEAKSAQADLINLKRKID 175 Query: 220 AGADFIITQLFFEADTFFRFVKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEVPQE 279 AGA+ +ITQ FF+ + + RF C +GI IVPGI P+ + L+++ + +++P Sbjct: 176 AGANHVITQFFFDIENYLRFRDRCASIGIDTEIVPGILPVTNFKQLQKMASFTNVKIPAW 235 Query: 280 IKDVIEPIKDNDAAIRNYGIELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRLGM 338 + + + ++ +A+ + + L G V HFYTLNR T + LG+ Sbjct: 236 LVKAYDGLDNDPTTRNLVAASVAMDMVKILSREG-VNDFHFYTLNRSELTYAICHMLGV 293 >6FNU-A nrPDB Length = 308 Score = 365 bits (938), Expect = e-101, Method: Composition-based stats. Identities = 113/297 (38%), Positives = 162/297 (54%), Gaps = 20/297 (6%) Query: 54 ESGDKWFSLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDPGSDKETSSMMIA 113 + SLEFFPP+T G NL+ R RM A PL+I VTW G G+ E ++ +A Sbjct: 15 ARASPFISLEFFPPKTELGTRNLMERMHRMTALDPLFITVTW---GAGGTTAE-KTLTLA 70 Query: 114 STAVNYCGLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGDPI-GDQW---EEEE 169 S A + +H+TC I L + G++NI+ALRGDP G+ W + E Sbjct: 71 SLAQQTLNIPVCMHLTCTNTEKAIIDDALDRCYNAGIRNILALRGDPPIGEDWLDSQSNE 130 Query: 170 GGFNYAVDLVKHIRSEFGDYFDICVAGYPKGHPEAGSFEA-------DLKHLKEKVSAGA 222 F YAVDLV++I+ +GD F + VA YP+GH E G E DL +LKEKV AGA Sbjct: 131 SPFKYAVDLVRYIKQSYGDKFCVGVAAYPEGHCE-GEAEGHEQDPLKDLVYLKEKVEAGA 189 Query: 223 DFIITQLFFEADTFFRFVKACTD-MGITCPIVPGIFPIQGYHSLRQLVKLSKLEVPQEIK 281 DF+ITQLF++ + F F + + P+ PG+ PI Y + KLS +P I Sbjct: 190 DFVITQLFYDVEKFLTFEMLFRERISQDLPLFPGLMPINSYLLFHRAAKLSHASIPPAIL 249 Query: 282 DVIEP-IKDNDAAIRNYGIELAVSLCQELL--ASGLVPGLHFYTLNREMATTEVLKR 335 P I+ +D A+++ G+++ + L QE+ SG + G HFYTLN E A +++ + Sbjct: 250 SRFPPEIQSDDNAVKSIGVDILIELIQEIYQRTSGRIKGFHFYTLNLEKAIAQIVSQ 306 >1EI6-A nrPDB Length = 406 Score = 34.6 bits (78), Expect = 0.12, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 7/87 (8%) Query: 147 QLGLKNIMALRGDPIGDQWEEEEGGFNYAVDLVKHIRSEFGDYFDICVAGYPK-----GH 201 + G++NI+A G P+ + + F +A L + +E D+ + Y + G Sbjct: 153 EHGVENILARVGMPVPSVYSADLSEFVFAAGL-SLLTNERPDFMYLSTTDYVQHKHAPGT 211 Query: 202 PEAGSFEADL-KHLKEKVSAGADFIIT 227 PEA +F A + + K GA IT Sbjct: 212 PEANAFYAMMDSYFKRYHEQGAIVAIT 238 >2PFJ-A nrPDB Length = 149 Score = 32.7 bits (73), Expect = 0.47, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 3/66 (4%) Query: 319 HFYTLNREMATTEVLKRLGMWTEDPRRPLPWALSAHPKRREEDVRPIFWASRPKSYIYRT 378 H YT + + ++ G+W D R+ HP E D+R +F +SR K Y Sbjct: 50 HTYTPDFLLPNGIFVETAGLWESDDRKKHLLIREQHP---ELDIRIVFSSSRTKLYKGSP 106 Query: 379 QEWDEF 384 + EF Sbjct: 107 TSYGEF 112 >3CAE-A nrPDB Length = 132 Score = 31.9 bits (71), Expect = 0.96, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 3/66 (4%) Query: 319 HFYTLNREMATTEVLKRLGMWTEDPRRPLPWALSAHPKRREEDVRPIFWASRPKSYIYRT 378 H YT + + ++ G+W D R+ HP E D+R +F +SR K Y Sbjct: 37 HTYTPDFLLPNGIFVETKGLWESDDRKKHLLIREQHP---ELDIRIVFSSSRTKLYKGSP 93 Query: 379 QEWDEF 384 + EF Sbjct: 94 TSYGEF 99 >1X6V-B nrPDB Length = 630 Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 16/31 (51%) Query: 332 VLKRLGMWTEDPRRPLPWALSAHPKRREEDV 362 +L LG WT+D PL W + H EE V Sbjct: 450 LLHPLGGWTKDDDVPLMWRMKQHAAVLEEGV 480 >3WSY-A nrPDB Length = 678 Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%) Query: 491 KPSSDPIVGWGPSG-GYVFQKAYLEFFTSRETAEALLQVLKKYELRVNY 538 KP++ I PSG VF+ +FF SRE E +L+ ++ ++LR Y Sbjct: 176 KPNTIYIERHEPSGYSTVFRST--DFFQSRENQEVILEEVRDFQLRDKY 222 >2QJF-A nrPDB Length = 405 Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 16/31 (51%) Query: 332 VLKRLGMWTEDPRRPLPWALSAHPKRREEDV 362 +L LG WT+D PL W + H EE V Sbjct: 231 LLHPLGGWTKDDDVPLMWRMKQHAAVLEEGV 261 >3TIX-A nrPDB Length = 207 Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 38/116 (32%) Query: 21 SGSESSKDSSRCSTPGLDPERHERLREKMRRRLESGDKWFSLEFFPPRTAEGAVNLISRF 80 +GS + ++ + P + PE ++ S + +F ++ P + Sbjct: 32 TGSLQDSEVNQEAKPEVKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQG 91 Query: 81 DRMAAGGPLYIDVTWHPAGDPGSDKETSSMMIASTAVNYCGLETILHMTCCRQRLE 136 M + LY + P + +I + GL ++ + C E Sbjct: 92 KEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGLPSLPFLACISDFPE 147 >1XIQ-A nrPDB Length = 157 Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%) Query: 399 ELKDYYLFYLKSKSPKEELLKMWGEELTSEESVFEVFVLYLSGEP 443 E K Y L +K +P EE+LK +EL S++ F+ V Y+S P Sbjct: 34 EKKGYKLIAIKMLNPTEEILKEHYKEL-SDQPFFKNLVAYISKGP 77 >1SM3-L nrPDB Length = 215 Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 16/41 (39%) Query: 61 SLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDP 101 S+ FPP + E N + + P + V W G P Sbjct: 117 SVTLFPPSSEELETNKATLVCTITDFYPGVVTVDWKVDGTP 157 >1JN6-A nrPDB Length = 210 Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 16/41 (39%) Query: 61 SLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDP 101 S+ FPP + E N + + P + V W G P Sbjct: 117 SVTLFPPSSEELETNKATLVCTITDFYPGVVTVDWKVDGTP 157 >2W1I-A nrPDB Length = 326 Score = 30.0 bits (66), Expect = 3.5, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 11/83 (13%) Query: 356 KRREEDVRPIFWASRPKSYIYRTQEWDEFPNGRWGNSSSPAFGE-LKDYYLFYLKSKSPK 414 K +E PIFW + P+S T+ + W +FG L + + + KSKSP Sbjct: 203 KVKEPGESPIFWYA-PESL---TESKFSVASDVW------SFGVVLYELFTYIEKSKSPP 252 Query: 415 EELLKMWGEELTSEESVFEVFVL 437 E ++M G + + VF + L Sbjct: 253 AEFMRMIGNDKQGQMIVFHLIEL 275 >3IO7-A nrPDB Length = 313 Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 11/83 (13%) Query: 356 KRREEDVRPIFWASRPKSYIYRTQEWDEFPNGRWGNSSSPAFGE-LKDYYLFYLKSKSPK 414 K +E PIFW + P+S T+ + W +FG L + + + KSKSP Sbjct: 190 KVKEPGESPIFWYA-PESL---TESKFSVASDVW------SFGVVLYELFTYIEKSKSPP 239 Query: 415 EELLKMWGEELTSEESVFEVFVL 437 E ++M G + + VF + L Sbjct: 240 AEFMRMIGNDKQGQMIVFHLIEL 262 >3LOM-A nrPDB Length = 313 Score = 29.6 bits (65), Expect = 4.7, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Query: 527 QVLKKYELRVNYHLVNVKGENITNAPELQPNAVTWGIFPGREIIQPTVV 575 QV+ KY R +L + E I AP+++ +A+ + +F G + I+P +V Sbjct: 11 QVIDKYTQRHELYLEQLLNEIIIPAPQIR-SALHYALFSGGKRIRPILV 58 >3TRH-A nrPDB Length = 169 Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 20/49 (40%) Query: 101 PGSDKETSSMMIASTAVNYCGLETILHMTCCRQRLEEITGHLHKAKQLG 149 GSD + S+M A T + G+ H+ + +E + A G Sbjct: 13 MGSDSDLSTMETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRG 61 >2QHR-L nrPDB Length = 218 Score = 28.9 bits (63), Expect = 7.8, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 17/41 (41%) Query: 61 SLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDP 101 +L FPP + E N + ++ P + V W G P Sbjct: 123 TLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKANGTP 163 >4I6M-A nrPDB Length = 477 Score = 28.5 bits (62), Expect = 8.7, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 6/76 (7%) Query: 423 EELTSEESVFEVFVLYLSGEPNRNGHKVTCL------PWNDEPLAAETSLLKEELLRVNR 476 +E E +F + + + RNG +V L P+N + L + L + L+V+ Sbjct: 40 DEGGEAEFIFGTYNMIDAAAEKRNGDEVYTLVDSQGLPYNWDALEMQWRYLYDTQLKVSP 99 Query: 477 QGILTINSQPNINGKP 492 + + + + P NGKP Sbjct: 100 EELPLVITMPATNGKP 115 >3CHF-A nrPDB Length = 433 Score = 28.5 bits (62), Expect = 9.2, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 5/65 (7%) Query: 355 PKRREEDVRPIFWASRPKS-YIYRTQEWDE----FPNGRWGNSSSPAFGELKDYYLFYLK 409 P R V F RP++ +Y T W + +P W ++ + +G +K YL + Sbjct: 65 PVERLTHVLYAFANVRPETGEVYMTDSWADIEKHYPGDSWSDTGNNVYGCIKQLYLLKKQ 124 Query: 410 SKSPK 414 +++ K Sbjct: 125 NRNLK 129 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.309 0.135 0.404 Lambda K H 0.267 0.0394 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,884,412 Number of Sequences: 36641 Number of extensions: 1263706 Number of successful extensions: 3246 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 18 Number of HSP's that attempted gapping in prelim test: 3192 Number of HSP's gapped (non-prelim): 37 length of query: 656 length of database: 10,336,785 effective HSP length: 103 effective length of query: 553 effective length of database: 6,562,762 effective search space: 3629207386 effective search space used: 3629207386 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 62 (28.5 bits)