BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= P42785
         (496 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3N2Z-B nrPDB                                                          937   0.0  
3N0T-A nrPDB                                                          374   e-104
2X9J-A nrPDB                                                           35   0.095
2OYO-A nrPDB                                                           33   0.30 
3OZ2-A nrPDB                                                           33   0.34 
4FC7-A nrPDB                                                           31   1.5  
3P1L-A nrPDB                                                           30   2.8  
5VYL-A nrPDB                                                           30   3.0  
4PK1-A nrPDB                                                           30   3.4  
2CG9-A nrPDB                                                           29   4.1  
2CGE-A nrPDB                                                           29   5.0  
1HK7-A nrPDB                                                           28   6.7  
1USV-A nrPDB                                                           28   8.1  

>3N2Z-B nrPDB
          Length = 446

 Score =  937 bits (2422), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/446 (100%), Positives = 446/446 (100%)

Query: 46  KNYSVLYFQQKVDHFGFNTVKTFNQRYLVADKYWKKNGGSILFYTGNEGDIIWFCNNTGF 105
           KNYSVLYFQQKVDHFGFNTVKTFNQRYLVADKYWKKNGGSILFYTGNEGDIIWFCNNTGF
Sbjct: 1   KNYSVLYFQQKVDHFGFNTVKTFNQRYLVADKYWKKNGGSILFYTGNEGDIIWFCNNTGF 60

Query: 106 MWDVAEELKAMLVFAEHRYYGESLPFGDNSFKDSRHLNFLTSEQALADFAELIKHLKRTI 165
           MWDVAEELKAMLVFAEHRYYGESLPFGDNSFKDSRHLNFLTSEQALADFAELIKHLKRTI
Sbjct: 61  MWDVAEELKAMLVFAEHRYYGESLPFGDNSFKDSRHLNFLTSEQALADFAELIKHLKRTI 120

Query: 166 PGAENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASAPIWQFEDLVPCGVFMKIVTTD 225
           PGAENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASAPIWQFEDLVPCGVFMKIVTTD
Sbjct: 121 PGAENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASAPIWQFEDLVPCGVFMKIVTTD 180

Query: 226 FRKSGPHCSESIHRSWDAINRLSNTGSGLQWLTGALHLCSPLTSQDIQHLKDWISETWVN 285
           FRKSGPHCSESIHRSWDAINRLSNTGSGLQWLTGALHLCSPLTSQDIQHLKDWISETWVN
Sbjct: 181 FRKSGPHCSESIHRSWDAINRLSNTGSGLQWLTGALHLCSPLTSQDIQHLKDWISETWVN 240

Query: 286 LAMVDYPYASNFLQPLPAWPIKVVCQYLKNPNVSDSLLLQNIFQALNVYYNYSGQVKCLN 345
           LAMVDYPYASNFLQPLPAWPIKVVCQYLKNPNVSDSLLLQNIFQALNVYYNYSGQVKCLN
Sbjct: 241 LAMVDYPYASNFLQPLPAWPIKVVCQYLKNPNVSDSLLLQNIFQALNVYYNYSGQVKCLN 300

Query: 346 ISETATSSLGTLGWSYQACTEVVMPFCTNGVDDMFEPHSWNLKELSDDCFQQWGVRPRPS 405
           ISETATSSLGTLGWSYQACTEVVMPFCTNGVDDMFEPHSWNLKELSDDCFQQWGVRPRPS
Sbjct: 301 ISETATSSLGTLGWSYQACTEVVMPFCTNGVDDMFEPHSWNLKELSDDCFQQWGVRPRPS 360

Query: 406 WITTMYGGKNISSHTNIVFSNGELDPWSGGGVTKDITDTLVAVTISEGAHHLDLRTKNAL 465
           WITTMYGGKNISSHTNIVFSNGELDPWSGGGVTKDITDTLVAVTISEGAHHLDLRTKNAL
Sbjct: 361 WITTMYGGKNISSHTNIVFSNGELDPWSGGGVTKDITDTLVAVTISEGAHHLDLRTKNAL 420

Query: 466 DPMSVLLARSLEVRHMKNWIRDFYDS 491
           DPMSVLLARSLEVRHMKNWIRDFYDS
Sbjct: 421 DPMSVLLARSLEVRHMKNWIRDFYDS 446


>3N0T-A nrPDB
          Length = 469

 Score =  374 bits (959), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/449 (43%), Positives = 272/449 (60%), Gaps = 23/449 (5%)

Query: 52  YFQQKVDHFGFNTV--KTFNQRYLVADKYWKKNGGSILFYTGNEGDIIWFCNNTGFMWDV 109
           +FQQ++DHF F     KTF QR+LV+D++W +  G I FYTGNEGD+  F NN+ F+ ++
Sbjct: 12  FFQQRLDHFNFERFGNKTFPQRFLVSDRFWVRGEGPIFFYTGNEGDVWAFANNSAFVAEL 71

Query: 110 AEELKAMLVFAEHRYYGESLPFGDNSFKDSRHLNFLTSEQALADFAELIKHLKRTIPGAE 169
           A E  A+LVFAEHRYYG+SLPFG  S +   H   LT EQALADFAEL++ L+R + GA+
Sbjct: 72  AAERGALLVFAEHRYYGKSLPFGAQSTQRG-HTELLTVEQALADFAELLRALRRDL-GAQ 129

Query: 170 NQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASAPIWQFEDLVPCGVFMKIVTTDFRKS 229
           + P IA GGSYGGML+A+ RMKYPH+V GALAASAP+     L     F + VT DF   
Sbjct: 130 DAPAIAFGGSYGGMLSAYLRMKYPHLVAGALAASAPVLAVAGLGDSNQFFRDVTADFEGQ 189

Query: 230 GPHCSESIHRSWDAINRLSNTGS--GLQWLTGALHLCSPLTSQ-DIQHLKDWISETWVNL 286
            P C++ +  ++  I  L   G+   ++W  G    C PL+ + D+  L  +    +  L
Sbjct: 190 SPKCTQGVREAFRQIKDLFLQGAYDTVRWEFGT---CQPLSDEKDLTQLFMFARNAFTVL 246

Query: 287 AMVDYPYASNFLQPLPAWPIKVVCQYLKNPNVSDSLLLQNIFQALNVYYNYSGQVKCLNI 346
           AM+DYPY ++FL PLPA P+KV C  L    +S++  +  +     + YN SG   C +I
Sbjct: 247 AMMDYPYPTDFLGPLPANPVKVGCDRL----LSEAQRITGLRALAGLVYNASGSEHCYDI 302

Query: 347 SETATSSLGTLG---------WSYQACTEVVMPFCTNGVDDMFEPHSWNLKELSDDCFQQ 397
                S     G         W YQACTE+ + F +N V DMF    +  +     C   
Sbjct: 303 YRLYHSCADPTGCGTGPDARAWDYQACTEINLTFASNNVTDMFPDLPFTDELRQRYCLDT 362

Query: 398 WGVRPRPSWITTMYGGKNISSHTNIVFSNGELDPWSGGGVTKDITDTLVAVTISEGAHHL 457
           WGV PRP W+ T + G ++ + +NI+FSNG LDPW+GGG+ ++++ +++AVTI  GAHHL
Sbjct: 363 WGVWPRPDWLLTSFWGGDLRAASNIIFSNGNLDPWAGGGIRRNLSASVIAVTIQGGAHHL 422

Query: 458 DLRTKNALDPMSVLLARSLEVRHMKNWIR 486
           DLR  +  DP SV+ AR LE   +  W++
Sbjct: 423 DLRASHPEDPASVVEARKLEATIIGEWVK 451


>2X9J-A nrPDB
          Length = 233

 Score = 34.7 bits (78), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 19/38 (50%)

Query: 432 WSGGGVTKDITDTLVAVTISEGAHHLDLRTKNALDPMS 469
           W GG VTKD  D  +   I  G H L  R  + +DP S
Sbjct: 47  WDGGNVTKDGGDAKLTANIRTGEHFLKAREAHIVDPNS 84


>2OYO-A nrPDB
          Length = 196

 Score = 33.1 bits (74), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 13/92 (14%)

Query: 99  FCNNTGFMWDVAEELKAMLVFAEHR------YYGESLP--FGDNSFKDS-----RHLNFL 145
             N  G++ +   EL A++V   +R       +G +L    GD    D+     RH +  
Sbjct: 66  LLNKEGYLTNAERELVAVVVSGVNRCLYCAVSHGAALREFLGDPQKADAVAVNWRHADLT 125

Query: 146 TSEQALADFAELIKHLKRTIPGAENQPVIAIG 177
             EQALA +AE +      +  A+ +P+ A+G
Sbjct: 126 EREQALAAYAEKLTRHPAEVTAADLEPLRAVG 157


>3OZ2-A nrPDB
          Length = 397

 Score = 32.7 bits (73), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 13/57 (22%), Positives = 28/57 (49%)

Query: 429 LDPWSGGGVTKDITDTLVAVTISEGAHHLDLRTKNALDPMSVLLARSLEVRHMKNWI 485
           +DP +GGG+   I   + A  +++ A   +  +   +     L+    E +H++NW+
Sbjct: 289 IDPITGGGIANAIVSGMYAAQVTKEAIESNDYSPQMMQKYEKLIKERFERKHLRNWV 345


>4FC7-A nrPDB
          Length = 277

 Score = 30.8 bits (68), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 12/103 (11%)

Query: 2   GRRALLLLLLSFLAPWATIALRPALRALGSLHLPTNPTS----LPAVAKNYSVLYFQQKV 57
           GRR L L +     P    A+  AL+  G + +  N  +     PA A +++       +
Sbjct: 76  GRRCLPLSMDVRAPPAVMAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDI 135

Query: 58  DHFGFNTVKTFNQRYLVADKYWKKNGGSILFYT---GNEGDII 97
           D  G     TFN   ++ +K+++ +GG I+  T   GN G  +
Sbjct: 136 DTSG-----TFNVSRVLYEKFFRDHGGVIVNITATLGNRGQAL 173


>3P1L-A nrPDB
          Length = 393

 Score = 29.6 bits (65), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 9/58 (15%)

Query: 293 YASNFLQPLPAWPIKVVCQYLKNPNVSDSLLLQNIFQALNVYYNYSGQVKCLNISETA 350
           YA N      AW  KV  + L  P VSD L+L          +  +GQ++ LN ++ A
Sbjct: 133 YALNTSDGTVAWQTKVAGEALSRPVVSDGLVL---------IHTSNGQLQALNEADGA 181


>5VYL-A nrPDB
          Length = 579

 Score = 29.6 bits (65), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 3/33 (9%)

Query: 441 ITDTLVAVTISEGAHHLD---LRTKNALDPMSV 470
           I DT++AVT S+ +H LD   LRT  AL P+ V
Sbjct: 140 IKDTILAVTGSDTSHALDSAGLRTAAALGPVRV 172


>4PK1-A nrPDB
          Length = 645

 Score = 29.6 bits (65), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 9/58 (15%)

Query: 293 YASNFLQPLPAWPIKVVCQYLKNPNVSDSLLLQNIFQALNVYYNYSGQVKCLNISETA 350
           YA N      AW  KV  + L  P VSD L+L          +  +GQ++ LN ++ A
Sbjct: 385 YALNTSDGTVAWQTKVAGEALSRPVVSDGLVL---------IHTSNGQLQALNEADGA 433


>2CG9-A nrPDB
          Length = 677

 Score = 29.3 bits (64), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 45  AKNYSVLYFQQKVDHFGFNTVKTFNQRYLV 74
           AKN+ VL+    +D + F  +K F  + LV
Sbjct: 493 AKNFEVLFLTDPIDEYAFTQLKEFEGKTLV 522


>2CGE-A nrPDB
          Length = 405

 Score = 28.9 bits (63), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 45  AKNYSVLYFQQKVDHFGFNTVKTFNQRYLV 74
           AKN+ VL+    +D + F  +K F  + LV
Sbjct: 221 AKNFEVLFLTDPIDEYAFTQLKEFEGKTLV 250


>1HK7-A nrPDB
          Length = 288

 Score = 28.5 bits (62), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 45  AKNYSVLYFQQKVDHFGFNTVKTFNQRYLV 74
           AKN+ VL+    +D + F  +K F  + LV
Sbjct: 221 AKNFEVLFLTDPIDEYAFTQLKEFEGKTLV 250


>1USV-A nrPDB
          Length = 260

 Score = 28.1 bits (61), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 45  AKNYSVLYFQQKVDHFGFNTVKTFNQRYLV 74
           AKN+ VL+    +D + F  +K F  + LV
Sbjct: 223 AKNFEVLFLTDPIDEYAFTQLKEFEGKTLV 252


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

3N2Z-B nrPDB                                                          824   0.0  
3N0T-A nrPDB                                                          731   0.0  

Sequences not found previously or not previously below threshold:

2X9J-A nrPDB                                                           35   0.073
3UVA-A nrPDB                                                           32   0.57 
3JWE-A nrPDB                                                           32   0.67 
2H1I-A nrPDB                                                           32   0.85 
5GK3-A nrPDB                                                           32   0.86 
2OYO-A nrPDB                                                           31   1.3  
5EGN-A nrPDB                                                           30   1.8  
5NYB-A nrPDB                                                           30   2.1  
3KR9-A nrPDB                                                           30   3.3  
2CGE-A nrPDB                                                           30   3.5  
2CG9-A nrPDB                                                           30   3.5  
1USV-A nrPDB                                                           30   3.5  
1HK7-A nrPDB                                                           30   3.5  
3OZ2-A nrPDB                                                           29   5.3  
4X52-A nrPDB                                                           29   5.4  
6EJB-A nrPDB                                                           28   6.6  
2RON-A nrPDB                                                           28   7.8  


CONVERGED!
>3N2Z-B nrPDB
          Length = 446

 Score =  824 bits (2128), Expect = 0.0,   Method: Composition-based stats.
 Identities = 446/446 (100%), Positives = 446/446 (100%)

Query: 46  KNYSVLYFQQKVDHFGFNTVKTFNQRYLVADKYWKKNGGSILFYTGNEGDIIWFCNNTGF 105
           KNYSVLYFQQKVDHFGFNTVKTFNQRYLVADKYWKKNGGSILFYTGNEGDIIWFCNNTGF
Sbjct: 1   KNYSVLYFQQKVDHFGFNTVKTFNQRYLVADKYWKKNGGSILFYTGNEGDIIWFCNNTGF 60

Query: 106 MWDVAEELKAMLVFAEHRYYGESLPFGDNSFKDSRHLNFLTSEQALADFAELIKHLKRTI 165
           MWDVAEELKAMLVFAEHRYYGESLPFGDNSFKDSRHLNFLTSEQALADFAELIKHLKRTI
Sbjct: 61  MWDVAEELKAMLVFAEHRYYGESLPFGDNSFKDSRHLNFLTSEQALADFAELIKHLKRTI 120

Query: 166 PGAENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASAPIWQFEDLVPCGVFMKIVTTD 225
           PGAENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASAPIWQFEDLVPCGVFMKIVTTD
Sbjct: 121 PGAENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASAPIWQFEDLVPCGVFMKIVTTD 180

Query: 226 FRKSGPHCSESIHRSWDAINRLSNTGSGLQWLTGALHLCSPLTSQDIQHLKDWISETWVN 285
           FRKSGPHCSESIHRSWDAINRLSNTGSGLQWLTGALHLCSPLTSQDIQHLKDWISETWVN
Sbjct: 181 FRKSGPHCSESIHRSWDAINRLSNTGSGLQWLTGALHLCSPLTSQDIQHLKDWISETWVN 240

Query: 286 LAMVDYPYASNFLQPLPAWPIKVVCQYLKNPNVSDSLLLQNIFQALNVYYNYSGQVKCLN 345
           LAMVDYPYASNFLQPLPAWPIKVVCQYLKNPNVSDSLLLQNIFQALNVYYNYSGQVKCLN
Sbjct: 241 LAMVDYPYASNFLQPLPAWPIKVVCQYLKNPNVSDSLLLQNIFQALNVYYNYSGQVKCLN 300

Query: 346 ISETATSSLGTLGWSYQACTEVVMPFCTNGVDDMFEPHSWNLKELSDDCFQQWGVRPRPS 405
           ISETATSSLGTLGWSYQACTEVVMPFCTNGVDDMFEPHSWNLKELSDDCFQQWGVRPRPS
Sbjct: 301 ISETATSSLGTLGWSYQACTEVVMPFCTNGVDDMFEPHSWNLKELSDDCFQQWGVRPRPS 360

Query: 406 WITTMYGGKNISSHTNIVFSNGELDPWSGGGVTKDITDTLVAVTISEGAHHLDLRTKNAL 465
           WITTMYGGKNISSHTNIVFSNGELDPWSGGGVTKDITDTLVAVTISEGAHHLDLRTKNAL
Sbjct: 361 WITTMYGGKNISSHTNIVFSNGELDPWSGGGVTKDITDTLVAVTISEGAHHLDLRTKNAL 420

Query: 466 DPMSVLLARSLEVRHMKNWIRDFYDS 491
           DPMSVLLARSLEVRHMKNWIRDFYDS
Sbjct: 421 DPMSVLLARSLEVRHMKNWIRDFYDS 446


>3N0T-A nrPDB
          Length = 469

 Score =  731 bits (1888), Expect = 0.0,   Method: Composition-based stats.
 Identities = 195/449 (43%), Positives = 272/449 (60%), Gaps = 23/449 (5%)

Query: 52  YFQQKVDHFGFNTV--KTFNQRYLVADKYWKKNGGSILFYTGNEGDIIWFCNNTGFMWDV 109
           +FQQ++DHF F     KTF QR+LV+D++W +  G I FYTGNEGD+  F NN+ F+ ++
Sbjct: 12  FFQQRLDHFNFERFGNKTFPQRFLVSDRFWVRGEGPIFFYTGNEGDVWAFANNSAFVAEL 71

Query: 110 AEELKAMLVFAEHRYYGESLPFGDNSFKDSRHLNFLTSEQALADFAELIKHLKRTIPGAE 169
           A E  A+LVFAEHRYYG+SLPFG  S +   H   LT EQALADFAEL++ L+R + GA+
Sbjct: 72  AAERGALLVFAEHRYYGKSLPFGAQSTQRG-HTELLTVEQALADFAELLRALRRDL-GAQ 129

Query: 170 NQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASAPIWQFEDLVPCGVFMKIVTTDFRKS 229
           + P IA GGSYGGML+A+ RMKYPH+V GALAASAP+     L     F + VT DF   
Sbjct: 130 DAPAIAFGGSYGGMLSAYLRMKYPHLVAGALAASAPVLAVAGLGDSNQFFRDVTADFEGQ 189

Query: 230 GPHCSESIHRSWDAINRLSNTGS--GLQWLTGALHLCSPLTSQ-DIQHLKDWISETWVNL 286
            P C++ +  ++  I  L   G+   ++W  G    C PL+ + D+  L  +    +  L
Sbjct: 190 SPKCTQGVREAFRQIKDLFLQGAYDTVRWEFGT---CQPLSDEKDLTQLFMFARNAFTVL 246

Query: 287 AMVDYPYASNFLQPLPAWPIKVVCQYLKNPNVSDSLLLQNIFQALNVYYNYSGQVKCLNI 346
           AM+DYPY ++FL PLPA P+KV C  L    +S++  +  +     + YN SG   C +I
Sbjct: 247 AMMDYPYPTDFLGPLPANPVKVGCDRL----LSEAQRITGLRALAGLVYNASGSEHCYDI 302

Query: 347 SETATSSLGTLG---------WSYQACTEVVMPFCTNGVDDMFEPHSWNLKELSDDCFQQ 397
                S     G         W YQACTE+ + F +N V DMF    +  +     C   
Sbjct: 303 YRLYHSCADPTGCGTGPDARAWDYQACTEINLTFASNNVTDMFPDLPFTDELRQRYCLDT 362

Query: 398 WGVRPRPSWITTMYGGKNISSHTNIVFSNGELDPWSGGGVTKDITDTLVAVTISEGAHHL 457
           WGV PRP W+ T + G ++ + +NI+FSNG LDPW+GGG+ ++++ +++AVTI  GAHHL
Sbjct: 363 WGVWPRPDWLLTSFWGGDLRAASNIIFSNGNLDPWAGGGIRRNLSASVIAVTIQGGAHHL 422

Query: 458 DLRTKNALDPMSVLLARSLEVRHMKNWIR 486
           DLR  +  DP SV+ AR LE   +  W++
Sbjct: 423 DLRASHPEDPASVVEARKLEATIIGEWVK 451


>2X9J-A nrPDB
          Length = 233

 Score = 35.0 bits (79), Expect = 0.073,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 19/38 (50%)

Query: 432 WSGGGVTKDITDTLVAVTISEGAHHLDLRTKNALDPMS 469
           W GG VTKD  D  +   I  G H L  R  + +DP S
Sbjct: 47  WDGGNVTKDGGDAKLTANIRTGEHFLKAREAHIVDPNS 84


>3UVA-A nrPDB
          Length = 424

 Score = 31.9 bits (71), Expect = 0.57,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 20/40 (50%)

Query: 447 AVTISEGAHHLDLRTKNALDPMSVLLARSLEVRHMKNWIR 486
           A+++  G H ++L    A     V+    LE RH + W+R
Sbjct: 86  ALSLIPGKHRVNLHAIYAETDGKVVERDQLEPRHFEKWVR 125


>3JWE-A nrPDB
          Length = 320

 Score = 31.9 bits (71), Expect = 0.67,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 71/178 (39%), Gaps = 25/178 (14%)

Query: 35  PTNPTSLPAVAKNYSVLYFQQKVDHFGFNTVKTFNQRYLVADKYWKKNGGS--ILFYTGN 92
           P +P+S+P   +  S     Q + +     +   + +YL   +YWK  G    ++F +  
Sbjct: 12  PEDPSSMP---EESSPRRTPQSIPYQDLPHLVNADGQYLFC-RYWKPTGTPKALIFVSHG 67

Query: 93  EGDIIWFCNNTGFMWDVAEELKAM--LVFAEHRYYGESLPFGDNSFKDSRHLNFLTSEQA 150
            G+      ++G   ++A  L  +  LVFA H + G     G+       H+        
Sbjct: 68  AGE------HSGRYEELARMLMGLDLLVFA-HDHVGHGQSEGERMVVSDFHV-------F 113

Query: 151 LADFAELIKHLKRTIPGAENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASAPIWQ 208
           + D  + +  +++  PG    PV  +G S GG +A     + P    G +  S  +  
Sbjct: 114 VRDVLQHVDSMQKDYPGL---PVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLA 168


>2H1I-A nrPDB
          Length = 226

 Score = 31.5 bits (70), Expect = 0.85,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 13/115 (11%)

Query: 173 VIAIGGSYGGMLAAWFRMKYPHMVVGALAASAPI----WQFEDLVPCGVFMKIVTTDFRK 228
           ++AIG S G  +AA     Y + + GA+     +     Q  +L    VF+   T D   
Sbjct: 121 IVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRRGMQLANLAGKSVFIAAGTND--- 177

Query: 229 SGPHCSESIHRSWDAINRLSNTGSGLQWLTGALHLCSPLTSQDIQHLKDWISETW 283
             P CS +       +   +N    + W     +    LT  +++  K+W  + +
Sbjct: 178 --PICSSAESEELKVLLENANANVTMHWE----NRGHQLTMGEVEKAKEWYDKAF 226


>5GK3-A nrPDB
          Length = 359

 Score = 31.5 bits (70), Expect = 0.86,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 416 ISSHTNIVFSNGELDPWSGGGVTKDITDTLVAVTISEGAHHLDLRTKNALDPMSVLLARS 475
           + +   + FSNG     +G GV  D+      +    GAHH+    ++   P  V+L   
Sbjct: 53  VKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGVP--VILHTD 110

Query: 476 LEVRHMKNWIRDFYDSAGKQH 496
              + +  WI    D AG++H
Sbjct: 111 HCAKKLLPWIDGLLD-AGEKH 130


>2OYO-A nrPDB
          Length = 196

 Score = 30.8 bits (68), Expect = 1.3,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 51/128 (39%), Gaps = 27/128 (21%)

Query: 77  KYWKKNGGSILFY---------TGNEGDIIW-----FCNNTGFMWDVAEELKAMLVFAEH 122
           K W K   +I F           G +    W       N  G++ +   EL A++V   +
Sbjct: 30  KLWAKAEANIGFVPNVFRAQAVNGEQFLAWWNYFNLLLNKEGYLTNAERELVAVVVSGVN 89

Query: 123 R------YYGESLP--FGDNSFKDS-----RHLNFLTSEQALADFAELIKHLKRTIPGAE 169
           R       +G +L    GD    D+     RH +    EQALA +AE +      +  A+
Sbjct: 90  RCLYCAVSHGAALREFLGDPQKADAVAVNWRHADLTEREQALAAYAEKLTRHPAEVTAAD 149

Query: 170 NQPVIAIG 177
            +P+ A+G
Sbjct: 150 LEPLRAVG 157


>5EGN-A nrPDB
          Length = 271

 Score = 30.4 bits (67), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 17/98 (17%)

Query: 117 LVFAEHRYYGESLPFGDNSFKDSRHLNFLTSEQALADFAELIKHLKRTIPGAENQPVIAI 176
           ++  +HR +G S         D     +   E A  D   ++  LK           + +
Sbjct: 48  VIVIDHRGHGRS---------DKPATGYSIMEHA-DDVVAVLDALKVD-------RAVFV 90

Query: 177 GGSYGGMLAAWFRMKYPHMVVGALAASAPIWQFEDLVP 214
           G S GGM+A    + +P  V+G L  S+     E + P
Sbjct: 91  GNSIGGMIAMQLNLDHPQRVIGNLILSSGTGLGEGMPP 128


>5NYB-A nrPDB
          Length = 283

 Score = 30.4 bits (67), Expect = 2.1,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 18/103 (17%)

Query: 109 VAEELKAMLVFAEHRYYGESLPFGDNSFKDS-------RHLNFLTSEQALADFAELIKHL 161
           +A +    LV+        SLP  +   +          H   L S Q +  +    K  
Sbjct: 91  IARDRGIALVW--------SLPGPEGPEQRGITAELADEHGEVLASYQKVQLYGPEEKA- 141

Query: 162 KRTIPGAENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASA 204
              +PG +  PV++ GG    +L A+  +++P MV  A A  A
Sbjct: 142 -AFVPGEQPPPVLSWGGRQLSLLVAY-DVEFPEMVRAAAARGA 182


>3KR9-A nrPDB
          Length = 225

 Score = 29.6 bits (65), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 25/50 (50%)

Query: 445 LVAVTISEGAHHLDLRTKNALDPMSVLLARSLEVRHMKNWIRDFYDSAGK 494
           LVA  +S+GA  LD+ + +A  P+ ++    ++       +   Y SA K
Sbjct: 8   LVASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVK 57


>2CGE-A nrPDB
          Length = 405

 Score = 29.6 bits (65), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 45  AKNYSVLYFQQKVDHFGFNTVKTFNQRYLV 74
           AKN+ VL+    +D + F  +K F  + LV
Sbjct: 221 AKNFEVLFLTDPIDEYAFTQLKEFEGKTLV 250


>2CG9-A nrPDB
          Length = 677

 Score = 29.6 bits (65), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 45  AKNYSVLYFQQKVDHFGFNTVKTFNQRYLV 74
           AKN+ VL+    +D + F  +K F  + LV
Sbjct: 493 AKNFEVLFLTDPIDEYAFTQLKEFEGKTLV 522


>1USV-A nrPDB
          Length = 260

 Score = 29.6 bits (65), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 45  AKNYSVLYFQQKVDHFGFNTVKTFNQRYLV 74
           AKN+ VL+    +D + F  +K F  + LV
Sbjct: 223 AKNFEVLFLTDPIDEYAFTQLKEFEGKTLV 252


>1HK7-A nrPDB
          Length = 288

 Score = 29.6 bits (65), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 45  AKNYSVLYFQQKVDHFGFNTVKTFNQRYLV 74
           AKN+ VL+    +D + F  +K F  + LV
Sbjct: 221 AKNFEVLFLTDPIDEYAFTQLKEFEGKTLV 250


>3OZ2-A nrPDB
          Length = 397

 Score = 28.8 bits (63), Expect = 5.3,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 28/57 (49%)

Query: 429 LDPWSGGGVTKDITDTLVAVTISEGAHHLDLRTKNALDPMSVLLARSLEVRHMKNWI 485
           +DP +GGG+   I   + A  +++ A   +  +   +     L+    E +H++NW+
Sbjct: 289 IDPITGGGIANAIVSGMYAAQVTKEAIESNDYSPQMMQKYEKLIKERFERKHLRNWV 345


>4X52-A nrPDB
          Length = 173

 Score = 28.8 bits (63), Expect = 5.4,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 8/92 (8%)

Query: 52  YFQQKVDHFGFNTVKTFNQRYLVADKYWKKN----GGSILFYTGNEGDIIWFCNNT--GF 105
           +F+  + +F    +K      L+    WKK+     G +LFY  +   +   C+N    F
Sbjct: 23  HFKASMKNFKIEKIKKIENSELLDKFTWKKSQMKEEGKLLFYATSRAYVESICSNNFDSF 82

Query: 106 MWDVAEEL-KAMLVFAEHRYYG-ESLPFGDNS 135
           + +  E      + FA+   Y  +  P+   +
Sbjct: 83  LHETNENKYGKGIYFAKDAIYSHKYCPYDAKN 114


>6EJB-A nrPDB
          Length = 751

 Score = 28.5 bits (62), Expect = 6.6,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 6/69 (8%)

Query: 234 SESIHRSWDAINRLSNTGSGLQWLTGALHLCSPLTS------QDIQHLKDWISETWVNLA 287
           S  +HR    ++R  +      W    +   + L S      +D+  + DW  + ++NL+
Sbjct: 156 SNYLHRQVLQVSRQYSNVRVTPWRMATIWGGASLLSTYLQSMRDLLEMTDWPWDFFINLS 215

Query: 288 MVDYPYASN 296
             DYP  +N
Sbjct: 216 AADYPIRTN 224


>2RON-A nrPDB
          Length = 242

 Score = 28.5 bits (62), Expect = 7.8,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 150 ALADFAELIKHLKRTIPGAENQPVIAIGGSYGGMLAAWFRMK 191
           A+ D  EL    K+ +    ++P +  G S GGM+      K
Sbjct: 57  AIEDLEELTDLYKQELNLRPDRPFVLFGHSMGGMITFRLAQK 98


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.317    0.136    0.419 

Lambda     K      H
   0.267   0.0423    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,913,892
Number of Sequences: 36641
Number of extensions: 956670
Number of successful extensions: 2270
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2232
Number of HSP's gapped (non-prelim): 42
length of query: 496
length of database: 10,336,785
effective HSP length: 101
effective length of query: 395
effective length of database: 6,636,044
effective search space: 2621237380
effective search space used: 2621237380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)