BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P42530 (257 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 2VM9-A nrPDB 527 e-150 2W94-A nrPDB 235 1e-62 5N6W-A nrPDB 61 5e-10 4AG4-A nrPDB 55 3e-08 4QDS-A nrPDB 54 5e-08 5DN2-A nrPDB 54 7e-08 4QDQ-A nrPDB 53 1e-07 1SDD-B nrPDB 52 2e-07 6BSD-A nrPDB 51 4e-07 2Z4F-A nrPDB 45 2e-05 4BDV-B nrPDB 45 4e-05 5K8D-B nrPDB 44 5e-05 2R7E-B nrPDB 44 6e-05 2CGZ-A nrPDB 36 0.014 4DEQ-A nrPDB 36 0.015 1T4B-A nrPDB 32 0.39 6AJD-A nrPDB 29 2.2 3DC8-A nrPDB 28 3.3 >2VM9-A nrPDB Length = 257 Score = 527 bits (1358), Expect = e-150, Method: Compositional matrix adjust. Identities = 257/257 (100%), Positives = 257/257 (100%) Query: 1 MSVPAGSVSCLANALLNLRSSTDYNADHGVKNSILNFSNSKDASRFDGSESWSSSVLDKN 60 MSVPAGSVSCLANALLNLRSSTDYNADHGVKNSILNFSNSKDASRFDGSESWSSSVLDKN Sbjct: 1 MSVPAGSVSCLANALLNLRSSTDYNADHGVKNSILNFSNSKDASRFDGSESWSSSVLDKN 60 Query: 61 QFIVAGSDSVKHFVAISTQGRGDHDQWVTSYKLRYTLDNVNWVEYNNGEIINANKDRNSI 120 QFIVAGSDSVKHFVAISTQGRGDHDQWVTSYKLRYTLDNVNWVEYNNGEIINANKDRNSI Sbjct: 61 QFIVAGSDSVKHFVAISTQGRGDHDQWVTSYKLRYTLDNVNWVEYNNGEIINANKDRNSI 120 Query: 121 VTINFNPPIKARSIAIHPQTYNNHISLRWELYALPVKSYSNPSVQVGEVSIGDRSLNSGT 180 VTINFNPPIKARSIAIHPQTYNNHISLRWELYALPVKSYSNPSVQVGEVSIGDRSLNSGT Sbjct: 121 VTINFNPPIKARSIAIHPQTYNNHISLRWELYALPVKSYSNPSVQVGEVSIGDRSLNSGT 180 Query: 181 GSRTIVRHVKFPVEFLSVPIVSIGCKKVDAHTDNGQMRWEGKSENITTKGFDLTFITWGN 240 GSRTIVRHVKFPVEFLSVPIVSIGCKKVDAHTDNGQMRWEGKSENITTKGFDLTFITWGN Sbjct: 181 GSRTIVRHVKFPVEFLSVPIVSIGCKKVDAHTDNGQMRWEGKSENITTKGFDLTFITWGN 240 Query: 241 NAVYDLTFDYVAVEFNN 257 NAVYDLTFDYVAVEFNN Sbjct: 241 NAVYDLTFDYVAVEFNN 257 >2W94-A nrPDB Length = 254 Score = 235 bits (600), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 123/252 (48%), Positives = 162/252 (64%), Gaps = 6/252 (2%) Query: 6 GSVSCLANALLNLRSSTDYNADHGVKNSILNFSNSKDASRFDGSESWSSSVLDKNQFIVA 65 G V LANA +LR+ST+YN H NS LN+ N+ + DGSE+W SS++D NQ+IVA Sbjct: 6 GLVQLLANAQCHLRTSTNYNGVHTQFNSALNYKNNG-TNTIDGSEAWCSSIVDTNQYIVA 64 Query: 66 GSDSVKHFVAISTQGRGDHDQWVTSYKLRYTLDNVNWVEYNNGEIINANKDRNSIVTINF 125 G + + F+ ++ QGRGD DQWVTSYK+RY+LDNV+W EY NG + DRN++V F Sbjct: 65 GCEVPRTFMCVALQGRGDADQWVTSYKIRYSLDNVSWFEYRNGAAVTGVTDRNTVVNHFF 124 Query: 126 NPPIKARSIAIHPQTYNNHISLRWELYALPVKSYSNPSVQVG-EVSIGDR-SLNSGTGSR 183 + PI+ARSIAIHP T+N HISLR E Y PV+S QVG ++ GD +LN+G+G R Sbjct: 125 DTPIRARSIAIHPLTWNGHISLRCEFYTQPVQS---SVTQVGADIYTGDNCALNTGSGKR 181 Query: 184 TIVRHVKFPVEFLSVPIVSIGCKKVDAHTDNGQMRWEGKSENITTKGFDLTFITWGNNAV 243 +V VKF EF ++P V++ ++D Q R + NITTKGFD F TW N V Sbjct: 182 EVVVPVKFQFEFATLPKVALNFDQIDCTDATNQTRIGVQPRNITTKGFDCVFYTWNENKV 241 Query: 244 YDLTFDYVAVEF 255 Y L DY+A Sbjct: 242 YSLRADYIATAL 253 >5N6W-A nrPDB Length = 201 Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 5/106 (4%) Query: 51 SWSSSVLDKNQFIVAGSDSVKHFVAISTQGRGDHDQWVTSYKLRYTLDN-VNWVEYN--- 106 +W S D +Q++ +K I TQG D D+W+T Y ++Y D +NW+ Y Sbjct: 88 AWLSKFQDSSQWLQIDLKEIKVISGILTQGHCDIDEWMTKYSVQYRTDERLNWIYYKDQT 147 Query: 107 -NGEIINANKDRNSIVTINFNPPIKARSIAIHPQTYNNHISLRWEL 151 N + N DR S V PPI +R I + P ++ I++R EL Sbjct: 148 GNNRVFYGNSDRTSTVQNLLRPPIISRFIRLIPLGWHVRIAIRMEL 193 >4AG4-A nrPDB Length = 351 Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 14/133 (10%) Query: 47 DGSESW--SSSVLDKNQFIVAGSDSVKHFVA-ISTQGR---GDHDQWVTSYKLRYTLDNV 100 DG +W + SV K + + H VA + TQGR G ++ SY+LRY+ D Sbjct: 43 DGDGAWCPAGSVFPKEEEYLQVDLQRLHLVALVGTQGRHAGGLGKEFSRSYRLRYSRDGR 102 Query: 101 NWVEYNN---GEIINANKDRNSIVTINFNPPIKARSIAIHPQTYN-NHISLRWELYAL-- 154 W+ + + E+I+ N+D +V + PP+ AR + +P+ + LR ELY Sbjct: 103 RWMGWKDRWGQEVISGNEDPEGVVLKDLGPPMVARLVRFYPRADRVMSVCLRVELYGCLW 162 Query: 155 --PVKSYSNPSVQ 165 + SY+ P Q Sbjct: 163 RDGLLSYTAPVGQ 175 >4QDS-A nrPDB Length = 187 Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 8/121 (6%) Query: 44 SRFDGSE-SWSSSVLDKNQFIVAGSDSVKHFVAISTQG----RGDHDQWVTSYKLRYTLD 98 SR G + W+ ++ +++ + AI+TQG + +V SYKL + + Sbjct: 39 SRLHGDDNGWTPNLDSNKEYLQVDLRFLTMLTAIATQGAISRETQNGYYVKSYKLEVSTN 98 Query: 99 NVNWVEYNNGE---IINANKDRNSIVTINFNPPIKARSIAIHPQTYNNHISLRWELYALP 155 +W+ Y +G+ + AN D +V + P+ R + I PQT+++ I+LR EL+ Sbjct: 99 GEDWMVYRHGKNHKVFQANNDATEVVLNKLHAPLLTRFVRIRPQTWHSGIALRLELFGCR 158 Query: 156 V 156 V Sbjct: 159 V 159 >5DN2-A nrPDB Length = 156 Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 61/125 (48%), Gaps = 8/125 (6%) Query: 40 SKDASRFDGSE-SWSSSVLDKNQFIVAGSDSVKHFVAISTQG----RGDHDQWVTSYKLR 94 + SR G + W+ ++ +++ + AI+TQG + +V SYKL Sbjct: 32 TPQQSRLHGDDNGWTPNLDSNKEYLQVDLRFLTMLTAIATQGAISRETQNGYYVKSYKLE 91 Query: 95 YTLDNVNWVEYNNGE---IINANKDRNSIVTINFNPPIKARSIAIHPQTYNNHISLRWEL 151 + + +W+ Y +G+ + AN D +V + P+ R + I PQT+++ I+LR EL Sbjct: 92 VSTNGEDWMVYRHGKNHKVFQANNDATEVVLNKLHAPLLTRFVRIRPQTWHSGIALRLEL 151 Query: 152 YALPV 156 + V Sbjct: 152 FGCRV 156 >4QDQ-A nrPDB Length = 329 Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 61/125 (48%), Gaps = 8/125 (6%) Query: 40 SKDASRFDGSE-SWSSSVLDKNQFIVAGSDSVKHFVAISTQG----RGDHDQWVTSYKLR 94 + SR G + W+ ++ +++ + AI+TQG + +V SYKL Sbjct: 34 TPQQSRLHGDDNGWTPNLDSNKEYLQVDLRFLTMLTAIATQGAISRETQNGYYVKSYKLE 93 Query: 95 YTLDNVNWVEYNNGE---IINANKDRNSIVTINFNPPIKARSIAIHPQTYNNHISLRWEL 151 + + +W+ Y +G+ + AN D +V + P+ R + I PQT+++ I+LR EL Sbjct: 94 VSTNGEDWMVYRHGKNHKVFQANNDATEVVLNKLHAPLLTRFVRIRPQTWHSGIALRLEL 153 Query: 152 YALPV 156 + V Sbjct: 154 FGCRV 158 >1SDD-B nrPDB Length = 647 Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 7/110 (6%) Query: 51 SWSSSVLDKNQFIVAGSDSVKHFVAISTQGRGD--HDQWVTSYKLRYTLDNVNWVEYNNG 108 +W + + NQ++ +K AI TQG + +V SY + Y+ +W Y Sbjct: 534 AWQAKANNNNQWLQIDLLKIKKITAIVTQGCKSLSSEMYVKSYTIHYSDQGTDWKPYREK 593 Query: 109 -----EIINANKDRNSIVTINFNPPIKARSIAIHPQTYNNHISLRWELYA 153 +I N + V FNPPI +R I I P+T+N I+LR EL+ Sbjct: 594 SSMVDKIFEGNNNVRGHVKNFFNPPIISRFIRIIPKTWNQSIALRLELFG 643 Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 7/97 (7%) Query: 73 FVAISTQGRGDHDQ--WVTSYKLRYTLDNVNWVEYNNGEIIN-----ANKDRNSIVTINF 125 I TQG + + + T + + Y+LD NW + N N D ++I Sbjct: 396 LTGIQTQGAKHYLKPYYTTEFCVAYSLDRKNWRIFKGNSTRNVMYFGGNSDASTIKENQI 455 Query: 126 NPPIKARSIAIHPQTYNNHISLRWELYALPVKSYSNP 162 +PP+ AR I I P N +LR EL V S P Sbjct: 456 DPPVVARYIRISPTGSYNKPALRLELQGCEVNGCSTP 492 >6BSD-A nrPDB Length = 876 Score = 51.2 bits (121), Expect = 4e-07, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 10/117 (8%) Query: 47 DGSESW--SSSVLDKNQFIVAGSDSVKHFVA-ISTQGR---GDHDQWVTSYKLRYTLDNV 100 DG +W + SV K + + H VA + TQGR G ++ SY+LRY+ D Sbjct: 68 DGDGAWCPAGSVFPKEEEYLQVDLQRLHLVALVGTQGRHAGGLGKEFSRSYRLRYSRDGR 127 Query: 101 NWVEYNN---GEIINANKDRNSIVTINFNPPIKARSIAIHPQTYN-NHISLRWELYA 153 W+ + + E+I+ N+D +V + PP+ AR + +P+ + LR ELY Sbjct: 128 RWMGWKDRWGQEVISGNEDPEGVVLKDLGPPMVARLVRFYPRADRVMSVCLRVELYG 184 >2Z4F-A nrPDB Length = 173 Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 11/119 (9%) Query: 47 DGSESWSSSVL----DKNQFIVAGSDSVKHFVAISTQGR--GDHD-QWVTSYKLRYTLDN 99 +G +W + D +F+ ++ + TQGR G H ++ YK+ Y+ D Sbjct: 46 EGDGAWCPEIPVEPDDLKEFLQIDLHTLHFITLVGTQGRHAGGHGIEFAPMYKINYSRDG 105 Query: 100 VNWVEYNN---GEIINANKDRNSIVTINFNPPIKARSIAIHPQT-YNNHISLRWELYAL 154 W+ + N ++++ N + I + PPI AR + P T ++ ++ +R ELY Sbjct: 106 TRWISWRNRHGKQVLDGNSNPYDIFLKDLEPPIVARFVRFIPVTDHSMNVCMRVELYGC 164 >4BDV-B nrPDB Length = 685 Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 7/95 (7%) Query: 75 AISTQGRGDH--DQWVTSYKLRYTLDNVNWVEYNNGE-----IINANKDRNSIVTINFNP 127 I TQG +++ + + Y+LD W Y + N D + I FNP Sbjct: 436 GIKTQGARQKFSSLYISQFIIMYSLDGKKWQTYRGNSTGTLMVFFGNVDSSGIKHNIFNP 495 Query: 128 PIKARSIAIHPQTYNNHISLRWELYALPVKSYSNP 162 PI AR I +HP Y+ +LR EL + S S P Sbjct: 496 PIIARYIRLHPTHYSIRSTLRMELMGCDLNSCSMP 530 Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 6/126 (4%) Query: 32 NSILNFSNSKDASRFDG-SESWSSSVLDKNQFIVAGSDSVKHFVAISTQGRGD--HDQWV 88 N +S SK G S +W V + +++ ++TQG +V Sbjct: 551 NMFATWSPSKARLHLQGRSNAWRPQVNNPKEWLQVDFQKTMKVTGVTTQGVKSLLTSMYV 610 Query: 89 TSYKLRYTLDNVNW-VEYNNGEI--INANKDRNSIVTINFNPPIKARSIAIHPQTYNNHI 145 + + + D W + + NG++ N+D + V + +PP+ R + IHPQ++ + I Sbjct: 611 KEFLISSSQDGHQWTLFFQNGKVKVFQGNQDSFTPVVNSLDPPLLTRYLRIHPQSWVHQI 670 Query: 146 SLRWEL 151 +LR E+ Sbjct: 671 ALRMEV 676 >5K8D-B nrPDB Length = 865 Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 7/95 (7%) Query: 75 AISTQGRGDH--DQWVTSYKLRYTLDNVNWVEYNNGE-----IINANKDRNSIVTINFNP 127 I TQG +++ + + Y+LD W Y + N D + I FNP Sbjct: 390 GIKTQGARQKFSSLYISQFIIMYSLDGKKWQTYRGNSTGTLMVFFGNVDSSGIKHNIFNP 449 Query: 128 PIKARSIAIHPQTYNNHISLRWELYALPVKSYSNP 162 PI AR I +HP Y+ +LR EL + S S P Sbjct: 450 PIIARYIRLHPTHYSIRSTLRMELMGCDLNSCSMP 484 Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/152 (22%), Positives = 65/152 (42%), Gaps = 11/152 (7%) Query: 32 NSILNFSNSKDASRFDG-SESWSSSVLDKNQFIVAGSDSVKHFVAISTQGRGD--HDQWV 88 N +S SK G S +W V + +++ ++TQG +V Sbjct: 505 NMFATWSPSKARLHLQGRSNAWRPQVNNPKEWLQVDFQKTMKVTGVTTQGVKSLLTSMYV 564 Query: 89 TSYKLRYTLDNVNW-VEYNNGEI--INANKDRNSIVTINFNPPIKARSIAIHPQTYNNHI 145 + + + D W + + NG++ N+D + V + +PP+ R + IHPQ++ + I Sbjct: 565 KEFLISSSQDGHQWTLFFQNGKVKVFQGNQDSFTPVVNSLDPPLLTRYLRIHPQSWVHQI 624 Query: 146 SLRWELYALPV-----KSYSNPSVQVGEVSIG 172 +LR E+ K+++ P E+ G Sbjct: 625 ALRMEVLGCEAQDLYDKTHTCPPCPAPELLGG 656 >2R7E-B nrPDB Length = 770 Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 7/95 (7%) Query: 75 AISTQGRGDH--DQWVTSYKLRYTLDNVNWVEYNNGE-----IINANKDRNSIVTINFNP 127 I TQG +++ + + Y+LD W Y + N D + I FNP Sbjct: 521 GIKTQGARQKFSSLYISQFIIMYSLDGKKWQTYRGNSTGTLMVFFGNVDSSGIKHNIFNP 580 Query: 128 PIKARSIAIHPQTYNNHISLRWELYALPVKSYSNP 162 PI AR I +HP Y+ +LR EL + S S P Sbjct: 581 PIIARYIRLHPTHYSIRSTLRMELMGCDLNSCSMP 615 Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 6/126 (4%) Query: 32 NSILNFSNSKDASRFDG-SESWSSSVLDKNQFIVAGSDSVKHFVAISTQGRGD--HDQWV 88 N +S SK G S +W V + +++ ++TQG +V Sbjct: 636 NMFATWSPSKARLHLQGRSNAWRPQVNNPKEWLQVDFQKTMKVTGVTTQGVKSLLTSMYV 695 Query: 89 TSYKLRYTLDNVNW-VEYNNGEI--INANKDRNSIVTINFNPPIKARSIAIHPQTYNNHI 145 + + + D W + + NG++ N+D + V + +PP+ R + IHPQ++ + I Sbjct: 696 KEFLISSSQDGHQWTLFFQNGKVKVFQGNQDSFTPVVNSLDPPLLTRYLRIHPQSWVHQI 755 Query: 146 SLRWEL 151 +LR E+ Sbjct: 756 ALRMEV 761 >2CGZ-A nrPDB Length = 101 Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust. Identities = 20/99 (20%), Positives = 46/99 (46%), Gaps = 9/99 (9%) Query: 164 VQVGEVSIGDRSLNSGTGS--------RTIVRHVKFPVEFLSVPIVSIGCKKVDAHTDNG 215 VQ G+++ GD + + S R + +++ F + P+V + ++D Sbjct: 2 VQSGKINCGDDAGWAKVPSDDPGRDNTRELAKNITFASPYCRPPVVLLSITQLDVEQSQN 61 Query: 216 QMRWEGKSENITTKGFDLTFITWGNNAVYDLTFDYVAVE 254 +R + +++ GF + TW N VY ++ ++++E Sbjct: 62 -LRVIARLYSVSPTGFKASCYTWHNTKVYSMSISWISIE 99 >4DEQ-A nrPDB Length = 218 Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust. Identities = 31/150 (20%), Positives = 59/150 (39%), Gaps = 17/150 (11%) Query: 17 NLRSSTDYNADHGVKNSILNFSNSKDASRFDGSESWSSSVLDKNQFIVAGSDSVKHFVAI 76 + +S+ Y+ + + S LN+ + W+ ++I ++ A+ Sbjct: 21 QITASSQYSTNWSAERSRLNYPEN----------GWTPGEDSYREWIQVDLGLLRFVTAV 70 Query: 77 STQGRGDHDQWVTSYKLRYTLD----NVNWV---EYNNGEIINANKDRNSIVTINFNPPI 129 TQG + Y Y +D +W+ E N + N + +V F P+ Sbjct: 71 GTQGAISKETKKKYYVKTYKIDVSSNGEDWITIKEGNKPVLFQGNTNPTDVVVAVFPKPL 130 Query: 130 KARSIAIHPQTYNNHISLRWELYALPVKSY 159 R + I P T+ IS+R+E+Y + Y Sbjct: 131 ITRFVRIKPATWETGISMRFEVYGCKITDY 160 >1T4B-A nrPDB Length = 367 Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust. Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Query: 184 TIVRHVKFPVEFLSVPIVSIGCKKVDAHTDNGQMR--WEGKSEN 225 T+ R + PV+ VP+ +D DNGQ R W+G++E Sbjct: 206 TLTRSGELPVDNFGVPLAGSLIPWIDKQLDNGQSREEWKGQAET 249 >6AJD-A nrPDB Length = 485 Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Query: 52 WSSSVLDKNQFIVA--GSDSVKHFVAISTQGRGDHDQWVTSYKLRYTLDNVNWVEYNNGE 109 WS V + +VA G +S KHF+A D V S++ L V V NGE Sbjct: 129 WSDEVAREMGELVAQHGVNSFKHFMAYKNAIMAADDTLVASFERCLELGAVPTVHAENGE 188 Query: 110 II 111 ++ Sbjct: 189 LV 190 >3DC8-A nrPDB Length = 490 Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust. Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%) Query: 52 WSSSVLDKNQFIVA--GSDSVKHFVAISTQGRGDHDQWVTSYKLRYTLDNVNWVEYNNGE 109 W V ++ + IV G ++ KHF+A D D+ +S++ L + V NG+ Sbjct: 126 WGEQVFNEMETIVKDKGINTFKHFMAYKGALMVDDDEMFSSFQRCAALGALPLVHAENGD 185 Query: 110 II 111 ++ Sbjct: 186 VV 187 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 2VM9-A nrPDB 389 e-109 2W94-A nrPDB 354 2e-98 6BSD-A nrPDB 151 3e-37 4AG4-A nrPDB 151 3e-37 5K8D-B nrPDB 150 6e-37 1SDD-B nrPDB 150 7e-37 4BDV-B nrPDB 148 3e-36 2R7E-B nrPDB 147 3e-36 4QDQ-A nrPDB 145 1e-35 5N6W-A nrPDB 145 2e-35 4QDS-A nrPDB 145 2e-35 5DN2-A nrPDB 144 3e-35 2Z4F-A nrPDB 143 8e-35 Sequences not found previously or not previously below threshold: 4DEQ-A nrPDB 99 2e-21 2CGZ-A nrPDB 41 4e-04 2DC0-A nrPDB 34 0.047 5MSX-A nrPDB 29 2.4 2IG2-H nrPDB 28 3.5 1K3I-A nrPDB 28 5.7 6A0L-A nrPDB 27 6.4 >2VM9-A nrPDB Length = 257 Score = 389 bits (1000), Expect = e-109, Method: Composition-based stats. Identities = 257/257 (100%), Positives = 257/257 (100%) Query: 1 MSVPAGSVSCLANALLNLRSSTDYNADHGVKNSILNFSNSKDASRFDGSESWSSSVLDKN 60 MSVPAGSVSCLANALLNLRSSTDYNADHGVKNSILNFSNSKDASRFDGSESWSSSVLDKN Sbjct: 1 MSVPAGSVSCLANALLNLRSSTDYNADHGVKNSILNFSNSKDASRFDGSESWSSSVLDKN 60 Query: 61 QFIVAGSDSVKHFVAISTQGRGDHDQWVTSYKLRYTLDNVNWVEYNNGEIINANKDRNSI 120 QFIVAGSDSVKHFVAISTQGRGDHDQWVTSYKLRYTLDNVNWVEYNNGEIINANKDRNSI Sbjct: 61 QFIVAGSDSVKHFVAISTQGRGDHDQWVTSYKLRYTLDNVNWVEYNNGEIINANKDRNSI 120 Query: 121 VTINFNPPIKARSIAIHPQTYNNHISLRWELYALPVKSYSNPSVQVGEVSIGDRSLNSGT 180 VTINFNPPIKARSIAIHPQTYNNHISLRWELYALPVKSYSNPSVQVGEVSIGDRSLNSGT Sbjct: 121 VTINFNPPIKARSIAIHPQTYNNHISLRWELYALPVKSYSNPSVQVGEVSIGDRSLNSGT 180 Query: 181 GSRTIVRHVKFPVEFLSVPIVSIGCKKVDAHTDNGQMRWEGKSENITTKGFDLTFITWGN 240 GSRTIVRHVKFPVEFLSVPIVSIGCKKVDAHTDNGQMRWEGKSENITTKGFDLTFITWGN Sbjct: 181 GSRTIVRHVKFPVEFLSVPIVSIGCKKVDAHTDNGQMRWEGKSENITTKGFDLTFITWGN 240 Query: 241 NAVYDLTFDYVAVEFNN 257 NAVYDLTFDYVAVEFNN Sbjct: 241 NAVYDLTFDYVAVEFNN 257 >2W94-A nrPDB Length = 254 Score = 354 bits (909), Expect = 2e-98, Method: Composition-based stats. Identities = 123/252 (48%), Positives = 162/252 (64%), Gaps = 6/252 (2%) Query: 6 GSVSCLANALLNLRSSTDYNADHGVKNSILNFSNSKDASRFDGSESWSSSVLDKNQFIVA 65 G V LANA +LR+ST+YN H NS LN+ N+ + DGSE+W SS++D NQ+IVA Sbjct: 6 GLVQLLANAQCHLRTSTNYNGVHTQFNSALNYKNNG-TNTIDGSEAWCSSIVDTNQYIVA 64 Query: 66 GSDSVKHFVAISTQGRGDHDQWVTSYKLRYTLDNVNWVEYNNGEIINANKDRNSIVTINF 125 G + + F+ ++ QGRGD DQWVTSYK+RY+LDNV+W EY NG + DRN++V F Sbjct: 65 GCEVPRTFMCVALQGRGDADQWVTSYKIRYSLDNVSWFEYRNGAAVTGVTDRNTVVNHFF 124 Query: 126 NPPIKARSIAIHPQTYNNHISLRWELYALPVKSYSNPSVQVG-EVSIGDR-SLNSGTGSR 183 + PI+ARSIAIHP T+N HISLR E Y PV+S QVG ++ GD +LN+G+G R Sbjct: 125 DTPIRARSIAIHPLTWNGHISLRCEFYTQPVQS---SVTQVGADIYTGDNCALNTGSGKR 181 Query: 184 TIVRHVKFPVEFLSVPIVSIGCKKVDAHTDNGQMRWEGKSENITTKGFDLTFITWGNNAV 243 +V VKF EF ++P V++ ++D Q R + NITTKGFD F TW N V Sbjct: 182 EVVVPVKFQFEFATLPKVALNFDQIDCTDATNQTRIGVQPRNITTKGFDCVFYTWNENKV 241 Query: 244 YDLTFDYVAVEF 255 Y L DY+A Sbjct: 242 YSLRADYIATAL 253 >6BSD-A nrPDB Length = 876 Score = 151 bits (381), Expect = 3e-37, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 14/133 (10%) Query: 47 DGSESWSS--SVLDKNQ-FIVAGSDSVKHFVAISTQGR---GDHDQWVTSYKLRYTLDNV 100 DG +W SV K + ++ + + TQGR G ++ SY+LRY+ D Sbjct: 68 DGDGAWCPAGSVFPKEEEYLQVDLQRLHLVALVGTQGRHAGGLGKEFSRSYRLRYSRDGR 127 Query: 101 NWVEYNN---GEIINANKDRNSIVTINFNPPIKARSIAIHPQTYN-NHISLRWELYAL-- 154 W+ + + E+I+ N+D +V + PP+ AR + +P+ + LR ELY Sbjct: 128 RWMGWKDRWGQEVISGNEDPEGVVLKDLGPPMVARLVRFYPRADRVMSVCLRVELYGCLW 187 Query: 155 --PVKSYSNPSVQ 165 + SY+ P Q Sbjct: 188 RDGLLSYTAPVGQ 200 >4AG4-A nrPDB Length = 351 Score = 151 bits (381), Expect = 3e-37, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 14/133 (10%) Query: 47 DGSESWSS--SVLDKNQ-FIVAGSDSVKHFVAISTQGR---GDHDQWVTSYKLRYTLDNV 100 DG +W SV K + ++ + + TQGR G ++ SY+LRY+ D Sbjct: 43 DGDGAWCPAGSVFPKEEEYLQVDLQRLHLVALVGTQGRHAGGLGKEFSRSYRLRYSRDGR 102 Query: 101 NWVEYNN---GEIINANKDRNSIVTINFNPPIKARSIAIHPQTYN-NHISLRWELYAL-- 154 W+ + + E+I+ N+D +V + PP+ AR + +P+ + LR ELY Sbjct: 103 RWMGWKDRWGQEVISGNEDPEGVVLKDLGPPMVARLVRFYPRADRVMSVCLRVELYGCLW 162 Query: 155 --PVKSYSNPSVQ 165 + SY+ P Q Sbjct: 163 RDGLLSYTAPVGQ 175 >5K8D-B nrPDB Length = 865 Score = 150 bits (378), Expect = 6e-37, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 65/152 (42%), Gaps = 11/152 (7%) Query: 32 NSILNFSNSKDASRFDG-SESWSSSVLDKNQFIVAGSDSVKHFVAISTQGRGD--HDQWV 88 N +S SK G S +W V + +++ ++TQG +V Sbjct: 505 NMFATWSPSKARLHLQGRSNAWRPQVNNPKEWLQVDFQKTMKVTGVTTQGVKSLLTSMYV 564 Query: 89 TSYKLRYTLDNVNW-VEYNNGEI--INANKDRNSIVTINFNPPIKARSIAIHPQTYNNHI 145 + + + D W + + NG++ N+D + V + +PP+ R + IHPQ++ + I Sbjct: 565 KEFLISSSQDGHQWTLFFQNGKVKVFQGNQDSFTPVVNSLDPPLLTRYLRIHPQSWVHQI 624 Query: 146 SLRWELYALPVK-----SYSNPSVQVGEVSIG 172 +LR E+ + +++ P E+ G Sbjct: 625 ALRMEVLGCEAQDLYDKTHTCPPCPAPELLGG 656 Score = 147 bits (372), Expect = 3e-36, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 55/136 (40%), Gaps = 10/136 (7%) Query: 37 FSNSKDASRFDGS-ESWSSSVLDKNQFIVAGSDSVKHFVAISTQGRGDH--DQWVTSYKL 93 ++ + GS +WS+ + +I + I TQG +++ + + Sbjct: 353 WAPKLARLHYSGSINAWSTK--EPFSWIKVDLLAPMIIHGIKTQGARQKFSSLYISQFII 410 Query: 94 RYTLDNVNWVEYNNGE-----IINANKDRNSIVTINFNPPIKARSIAIHPQTYNNHISLR 148 Y+LD W Y + N D + I FNPPI AR I +HP Y+ +LR Sbjct: 411 MYSLDGKKWQTYRGNSTGTLMVFFGNVDSSGIKHNIFNPPIIARYIRLHPTHYSIRSTLR 470 Query: 149 WELYALPVKSYSNPSV 164 EL + S S P Sbjct: 471 MELMGCDLNSCSMPLG 486 >1SDD-B nrPDB Length = 647 Score = 150 bits (378), Expect = 7e-37, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 8/128 (6%) Query: 37 FSNSKDASRFDGS-ESWSSSVLDKNQFIVAGSDSVKHFVAISTQGRGD--HDQWVTSYKL 93 + G +W + + NQ++ +K AI TQG + +V SY + Sbjct: 519 WEPFLARLNAQGRVNAWQAKANNNNQWLQIDLLKIKKITAIVTQGCKSLSSEMYVKSYTI 578 Query: 94 RYTLDNVNWVEYNNG-----EIINANKDRNSIVTINFNPPIKARSIAIHPQTYNNHISLR 148 Y+ +W Y +I N + V FNPPI +R I I P+T+N I+LR Sbjct: 579 HYSDQGTDWKPYREKSSMVDKIFEGNNNVRGHVKNFFNPPIISRFIRIIPKTWNQSIALR 638 Query: 149 WELYALPV 156 EL+ + Sbjct: 639 LELFGCDM 646 Score = 107 bits (266), Expect = 6e-24, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 48/140 (34%), Gaps = 12/140 (8%) Query: 37 FSNSKDASRFDGS-ESW----SSSVLDKNQFIVAGSDSVKHFVAISTQGRG--DHDQWVT 89 + GS +W S+ + +I I TQG + T Sbjct: 355 WEPKLARLNNGGSYNAWIAEKLSTEFNPEPWIQVDMQKEVLLTGIQTQGAKHYLKPYYTT 414 Query: 90 SYKLRYTLDNVNWVEYNNGEI-----INANKDRNSIVTINFNPPIKARSIAIHPQTYNNH 144 + + Y+LD NW + N D ++I +PP+ AR I I P N Sbjct: 415 EFCVAYSLDRKNWRIFKGNSTRNVMYFGGNSDASTIKENQIDPPVVARYIRISPTGSYNK 474 Query: 145 ISLRWELYALPVKSYSNPSV 164 +LR EL V S P Sbjct: 475 PALRLELQGCEVNGCSTPLG 494 >4BDV-B nrPDB Length = 685 Score = 148 bits (373), Expect = 3e-36, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 55/136 (40%), Gaps = 10/136 (7%) Query: 37 FSNSKDASRFDGS-ESWSSSVLDKNQFIVAGSDSVKHFVAISTQGRGDH--DQWVTSYKL 93 ++ + GS +WS+ + +I + I TQG +++ + + Sbjct: 399 WAPKLARLHYSGSINAWSTK--EPFSWIKVDLLAPMIIHGIKTQGARQKFSSLYISQFII 456 Query: 94 RYTLDNVNWVEYNNGE-----IINANKDRNSIVTINFNPPIKARSIAIHPQTYNNHISLR 148 Y+LD W Y + N D + I FNPPI AR I +HP Y+ +LR Sbjct: 457 MYSLDGKKWQTYRGNSTGTLMVFFGNVDSSGIKHNIFNPPIIARYIRLHPTHYSIRSTLR 516 Query: 149 WELYALPVKSYSNPSV 164 EL + S S P Sbjct: 517 MELMGCDLNSCSMPLG 532 Score = 137 bits (344), Expect = 5e-33, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 6/132 (4%) Query: 32 NSILNFSNSKDASRFDG-SESWSSSVLDKNQFIVAGSDSVKHFVAISTQGRGD--HDQWV 88 N +S SK G S +W V + +++ ++TQG +V Sbjct: 551 NMFATWSPSKARLHLQGRSNAWRPQVNNPKEWLQVDFQKTMKVTGVTTQGVKSLLTSMYV 610 Query: 89 TSYKLRYTLDNVNW-VEYNNGEI--INANKDRNSIVTINFNPPIKARSIAIHPQTYNNHI 145 + + + D W + + NG++ N+D + V + +PP+ R + IHPQ++ + I Sbjct: 611 KEFLISSSQDGHQWTLFFQNGKVKVFQGNQDSFTPVVNSLDPPLLTRYLRIHPQSWVHQI 670 Query: 146 SLRWELYALPVK 157 +LR E+ + Sbjct: 671 ALRMEVLGCEAQ 682 >2R7E-B nrPDB Length = 770 Score = 147 bits (372), Expect = 3e-36, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 55/136 (40%), Gaps = 10/136 (7%) Query: 37 FSNSKDASRFDGS-ESWSSSVLDKNQFIVAGSDSVKHFVAISTQGRGDH--DQWVTSYKL 93 ++ + GS +WS+ + +I + I TQG +++ + + Sbjct: 484 WAPKLARLHYSGSINAWSTK--EPFSWIKVDLLAPMIIHGIKTQGARQKFSSLYISQFII 541 Query: 94 RYTLDNVNWVEYNNGE-----IINANKDRNSIVTINFNPPIKARSIAIHPQTYNNHISLR 148 Y+LD W Y + N D + I FNPPI AR I +HP Y+ +LR Sbjct: 542 MYSLDGKKWQTYRGNSTGTLMVFFGNVDSSGIKHNIFNPPIIARYIRLHPTHYSIRSTLR 601 Query: 149 WELYALPVKSYSNPSV 164 EL + S S P Sbjct: 602 MELMGCDLNSCSMPLG 617 Score = 137 bits (344), Expect = 6e-33, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 6/132 (4%) Query: 32 NSILNFSNSKDASRFDG-SESWSSSVLDKNQFIVAGSDSVKHFVAISTQGRGD--HDQWV 88 N +S SK G S +W V + +++ ++TQG +V Sbjct: 636 NMFATWSPSKARLHLQGRSNAWRPQVNNPKEWLQVDFQKTMKVTGVTTQGVKSLLTSMYV 695 Query: 89 TSYKLRYTLDNVNW-VEYNNGEI--INANKDRNSIVTINFNPPIKARSIAIHPQTYNNHI 145 + + + D W + + NG++ N+D + V + +PP+ R + IHPQ++ + I Sbjct: 696 KEFLISSSQDGHQWTLFFQNGKVKVFQGNQDSFTPVVNSLDPPLLTRYLRIHPQSWVHQI 755 Query: 146 SLRWELYALPVK 157 +LR E+ + Sbjct: 756 ALRMEVLGCEAQ 767 >4QDQ-A nrPDB Length = 329 Score = 145 bits (367), Expect = 1e-35, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 8/127 (6%) Query: 37 FSNSKDASRFDGSESWSSSVLDKNQFIVAGSDSVKHFVAISTQG----RGDHDQWVTSYK 92 ++ + D W+ ++ +++ + AI+TQG + +V SYK Sbjct: 33 WTPQQSRLHGD-DNGWTPNLDSNKEYLQVDLRFLTMLTAIATQGAISRETQNGYYVKSYK 91 Query: 93 LRYTLDNVNWVEYNNGE---IINANKDRNSIVTINFNPPIKARSIAIHPQTYNNHISLRW 149 L + + +W+ Y +G+ + AN D +V + P+ R + I PQT+++ I+LR Sbjct: 92 LEVSTNGEDWMVYRHGKNHKVFQANNDATEVVLNKLHAPLLTRFVRIRPQTWHSGIALRL 151 Query: 150 ELYALPV 156 EL+ V Sbjct: 152 ELFGCRV 158 Score = 79.0 bits (193), Expect = 2e-15, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 50/139 (35%), Gaps = 19/139 (13%) Query: 37 FSNSKDASRFDGSESWSSSVL---DKNQFIVAGSDSVKHFVAISTQGRGDHDQ------- 86 +S S W + +++ + K + QG D Sbjct: 189 WSPSAARL-VSSRSGWFPRIPQAQPGEEWLQVDLGTPKTVKGVIIQGARGGDSITAVEAR 247 Query: 87 -WVTSYKLRYTLDNVNWVEYNN-----GEIINANKDRNSIVTINFNPPIKARSIAIHPQT 140 +V +K+ Y+L+ +W + ++ N ++ F+ PI A+ + ++P+ Sbjct: 248 AFVRKFKVSYSLNGKDWEYIQDPRTQQPKLFEGNMHYDTPDIRRFD-PIPAQYVRVYPER 306 Query: 141 YN-NHISLRWELYALPVKS 158 ++ I +R E+ S Sbjct: 307 WSPAGIGMRLEVLGCDWTS 325 >5N6W-A nrPDB Length = 201 Score = 145 bits (366), Expect = 2e-35, Method: Composition-based stats. Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 6/127 (4%) Query: 34 ILNFSNSKDASRFDGSE-SWSSSVLDKNQFIVAGSDSVKHFVAISTQGRGDHDQWVTSYK 92 +++ +K G +W S D +Q++ +K I TQG D D+W+T Y Sbjct: 70 YSSWTANKARLNSQGFGCAWLSKFQDSSQWLQIDLKEIKVISGILTQGHCDIDEWMTKYS 129 Query: 93 LRYTLDNV-NWVEYN----NGEIINANKDRNSIVTINFNPPIKARSIAIHPQTYNNHISL 147 ++Y D NW+ Y N + N DR S V PPI +R I + P ++ I++ Sbjct: 130 VQYRTDERLNWIYYKDQTGNNRVFYGNSDRTSTVQNLLRPPIISRFIRLIPLGWHVRIAI 189 Query: 148 RWELYAL 154 R EL Sbjct: 190 RMELLEC 196 >4QDS-A nrPDB Length = 187 Score = 145 bits (365), Expect = 2e-35, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 8/127 (6%) Query: 37 FSNSKDASRFDGSESWSSSVLDKNQFIVAGSDSVKHFVAISTQG----RGDHDQWVTSYK 92 ++ + D W+ ++ +++ + AI+TQG + +V SYK Sbjct: 34 WTPQQSRLHGD-DNGWTPNLDSNKEYLQVDLRFLTMLTAIATQGAISRETQNGYYVKSYK 92 Query: 93 LRYTLDNVNWVEYNNGE---IINANKDRNSIVTINFNPPIKARSIAIHPQTYNNHISLRW 149 L + + +W+ Y +G+ + AN D +V + P+ R + I PQT+++ I+LR Sbjct: 93 LEVSTNGEDWMVYRHGKNHKVFQANNDATEVVLNKLHAPLLTRFVRIRPQTWHSGIALRL 152 Query: 150 ELYALPV 156 EL+ V Sbjct: 153 ELFGCRV 159 >5DN2-A nrPDB Length = 156 Score = 144 bits (363), Expect = 3e-35, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 8/127 (6%) Query: 37 FSNSKDASRFDGSESWSSSVLDKNQFIVAGSDSVKHFVAISTQG----RGDHDQWVTSYK 92 ++ + D W+ ++ +++ + AI+TQG + +V SYK Sbjct: 31 WTPQQSRLHGD-DNGWTPNLDSNKEYLQVDLRFLTMLTAIATQGAISRETQNGYYVKSYK 89 Query: 93 LRYTLDNVNWVEYNNGE---IINANKDRNSIVTINFNPPIKARSIAIHPQTYNNHISLRW 149 L + + +W+ Y +G+ + AN D +V + P+ R + I PQT+++ I+LR Sbjct: 90 LEVSTNGEDWMVYRHGKNHKVFQANNDATEVVLNKLHAPLLTRFVRIRPQTWHSGIALRL 149 Query: 150 ELYALPV 156 EL+ V Sbjct: 150 ELFGCRV 156 >2Z4F-A nrPDB Length = 173 Score = 143 bits (360), Expect = 8e-35, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 16/134 (11%) Query: 37 FSNSKDAS--RFD---GSESWSSSVL----DKNQFIVAGSDSVKHFVAISTQGR---GDH 84 +S S A R D G +W + D +F+ ++ + TQGR G Sbjct: 31 WSESTAAKYGRLDSEEGDGAWCPEIPVEPDDLKEFLQIDLHTLHFITLVGTQGRHAGGHG 90 Query: 85 DQWVTSYKLRYTLDNVNWVEYNN---GEIINANKDRNSIVTINFNPPIKARSIAIHPQTY 141 ++ YK+ Y+ D W+ + N ++++ N + I + PPI AR + P T Sbjct: 91 IEFAPMYKINYSRDGTRWISWRNRHGKQVLDGNSNPYDIFLKDLEPPIVARFVRFIPVTD 150 Query: 142 N-NHISLRWELYAL 154 + ++ +R ELY Sbjct: 151 HSMNVCMRVELYGC 164 >4DEQ-A nrPDB Length = 218 Score = 99.0 bits (245), Expect = 2e-21, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 50/131 (38%), Gaps = 8/131 (6%) Query: 36 NFSNSKDASRFDGSESWSSSVLDKNQFIVAGSDSVKHFVAISTQGRGDHDQWVTSYK--- 92 N+S + + W+ ++I ++ A+ TQG + Y Sbjct: 31 NWSAERSRLNYP-ENGWTPGEDSYREWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTY 89 Query: 93 -LRYTLDNVNWVEYNNGE---IINANKDRNSIVTINFNPPIKARSIAIHPQTYNNHISLR 148 + + + +W+ G + N + +V F P+ R + I P T+ IS+R Sbjct: 90 KIDVSSNGEDWITIKEGNKPVLFQGNTNPTDVVVAVFPKPLITRFVRIKPATWETGISMR 149 Query: 149 WELYALPVKSY 159 +E+Y + Y Sbjct: 150 FEVYGCKITDY 160 >2CGZ-A nrPDB Length = 101 Score = 41.2 bits (95), Expect = 4e-04, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 36/73 (49%), Gaps = 1/73 (1%) Query: 182 SRTIVRHVKFPVEFLSVPIVSIGCKKVDAHTDNGQMRWEGKSENITTKGFDLTFITWGNN 241 +R + +++ F + P+V + ++D +R + +++ GF + TW N Sbjct: 28 TRELAKNITFASPYCRPPVVLLSITQLDVEQSQN-LRVIARLYSVSPTGFKASCYTWHNT 86 Query: 242 AVYDLTFDYVAVE 254 VY ++ ++++E Sbjct: 87 KVYSMSISWISIE 99 >2DC0-A nrPDB Length = 434 Score = 34.3 bits (77), Expect = 0.047, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 5/71 (7%) Query: 144 HISLRWELY----ALPVKSYSNPSVQVGEVSIGDRSLNSG-TGSRTIVRHVKFPVEFLSV 198 +LR EL + + + + L SG G R + P L V Sbjct: 334 REALRLELVKALRGVDALLLPVQPLPAPPLGTEEVELESGRKGHREAFITLTLPFSLLGV 393 Query: 199 PIVSIGCKKVD 209 P +++ KV+ Sbjct: 394 PTLALPFAKVE 404 >5MSX-A nrPDB Length = 459 Score = 28.9 bits (63), Expect = 2.4, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 15/68 (22%) Query: 46 FDGSES--WSSSVLDK-NQFIVAGSDSVKHFVAISTQGRGDHDQWVT-----SYKLRYTL 97 DG+ W ++ D N +IVA +VK R +V +Y + ++ Sbjct: 359 VDGANGSRWMAAAEDSINPWIVADLGTVKKV-------RRSEIYFVRPTAGHAYVIEASM 411 Query: 98 DNVNWVEY 105 D W E+ Sbjct: 412 DGKVWQEF 419 >2IG2-H nrPDB Length = 455 Score = 28.1 bits (61), Expect = 3.5, Method: Composition-based stats. Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 1/31 (3%) Query: 142 NNHISLRWELYALPVKSYSNPSVQVGEVSIG 172 N + R E + K+++ P E+ G Sbjct: 217 NTKVDKRVEPKSCD-KTHTCPPCPAPELLGG 246 >1K3I-A nrPDB Length = 656 Score = 27.7 bits (60), Expect = 5.7, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 52/153 (33%), Gaps = 26/153 (16%) Query: 3 VPAGSVSCLANALLNLRSSTDYNADHGVKNSILN----FSNSKDASRFDG--SESW---- 52 +P GS+ L+ LR+S + N + S ++ DG W Sbjct: 6 IPEGSLQFLS-----LRASAPIGSAISRNNWAVTCDSAQSGNECNKAIDGNKDTFWHTFY 60 Query: 53 -SSSVLDKNQFIVAGSDSVKHFVAISTQGRGDHDQ--WVTSYKLRYTLDNVNWVEYNNGE 109 ++ + ++ +S R D +Q W+ +++ + D NW Sbjct: 61 GANGDPKPPHTYTIDMKTTQNVNGLSMLPRQDGNQNGWIGRHEVYLSSDGTNW----GSP 116 Query: 110 IINAN--KDRNSIVTINFNPPIKARSIAIHPQT 140 + + + D + + P AR + + T Sbjct: 117 VASGSWFADSTTKYSNFETRP--ARYVRLVAIT 147 >6A0L-A nrPDB Length = 471 Score = 27.3 bits (59), Expect = 6.4, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 20/42 (47%) Query: 76 ISTQGRGDHDQWVTSYKLRYTLDNVNWVEYNNGEIINANKDR 117 + T+ GD + + SY L ++L+ V Y + + + D Sbjct: 322 VLTRHAGDVEAALLSYALLFSLEGAPMVYYGDEVGLTGDNDP 363 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.314 0.134 0.378 Lambda K H 0.267 0.0407 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,423,547 Number of Sequences: 36641 Number of extensions: 409367 Number of successful extensions: 1036 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 13 Number of HSP's that attempted gapping in prelim test: 939 Number of HSP's gapped (non-prelim): 54 length of query: 257 length of database: 10,336,785 effective HSP length: 95 effective length of query: 162 effective length of database: 6,855,890 effective search space: 1110654180 effective search space used: 1110654180 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 58 (27.0 bits)