BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= P41948
(499 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
5AEX-A nrPDB 1014 0.0
6EJH-A nrPDB 580 e-166
2B2H-A nrPDB 264 6e-71
3C1J-A nrPDB 204 6e-53
6EU6-A nrPDB 141 6e-34
3HD6-A nrPDB 39 0.004
3B9W-A nrPDB 35 0.080
3GC2-A nrPDB 30 1.9
>5AEX-A nrPDB
Length = 505
Score = 1014 bits (2623), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/499 (100%), Positives = 499/499 (100%)
Query: 1 MSYNFTGTPTGEGTGGNSLTTDLNTQFDLANMGWIGVASAGVWIMVPGIGLLYSGLSRKK 60
MSYNFTGTPTGEGTGGNSLTTDLNTQFDLANMGWIGVASAGVWIMVPGIGLLYSGLSRKK
Sbjct: 1 MSYNFTGTPTGEGTGGNSLTTDLNTQFDLANMGWIGVASAGVWIMVPGIGLLYSGLSRKK 60
Query: 61 HALSLLWASMMASAVCIFQWFFWGYSLAFSHNTRGNGFIGTLEFFGFRNVLGAPSSVSSL 120
HALSLLWASMMASAVCIFQWFFWGYSLAFSHNTRGNGFIGTLEFFGFRNVLGAPSSVSSL
Sbjct: 61 HALSLLWASMMASAVCIFQWFFWGYSLAFSHNTRGNGFIGTLEFFGFRNVLGAPSSVSSL 120
Query: 121 PDILFAVYQGMFAAVTGALMLGGACERARLFPMMVFLFLWMTIVYCPIACWVWNAEGWLV 180
PDILFAVYQGMFAAVTGALMLGGACERARLFPMMVFLFLWMTIVYCPIACWVWNAEGWLV
Sbjct: 121 PDILFAVYQGMFAAVTGALMLGGACERARLFPMMVFLFLWMTIVYCPIACWVWNAEGWLV 180
Query: 181 KLGSLDYAGGLCVHLTSGHGGLVYALILGKRNDPVTRKGMPKYKPHSVTSVVLGTVFLWF 240
KLGSLDYAGGLCVHLTSGHGGLVYALILGKRNDPVTRKGMPKYKPHSVTSVVLGTVFLWF
Sbjct: 181 KLGSLDYAGGLCVHLTSGHGGLVYALILGKRNDPVTRKGMPKYKPHSVTSVVLGTVFLWF 240
Query: 241 GWMFFNGGSAGNATIRAWYSIMSTNLAAACGGLTWMVIDYFRCGRKWTTVGLCSGIIAGL 300
GWMFFNGGSAGNATIRAWYSIMSTNLAAACGGLTWMVIDYFRCGRKWTTVGLCSGIIAGL
Sbjct: 241 GWMFFNGGSAGNATIRAWYSIMSTNLAAACGGLTWMVIDYFRCGRKWTTVGLCSGIIAGL 300
Query: 301 VGITPAAGFVPIWSAVVIGVVTGAGCNLAVDLKSLLRIDDGLDCYSIHGVGGCIGSVLTG 360
VGITPAAGFVPIWSAVVIGVVTGAGCNLAVDLKSLLRIDDGLDCYSIHGVGGCIGSVLTG
Sbjct: 301 VGITPAAGFVPIWSAVVIGVVTGAGCNLAVDLKSLLRIDDGLDCYSIHGVGGCIGSVLTG 360
Query: 361 IFAADYVNATAGSYISPIDGGWINHHYKQVGYQLAGICAALAWTVTVTSILLLTMNAIPF 420
IFAADYVNATAGSYISPIDGGWINHHYKQVGYQLAGICAALAWTVTVTSILLLTMNAIPF
Sbjct: 361 IFAADYVNATAGSYISPIDGGWINHHYKQVGYQLAGICAALAWTVTVTSILLLTMNAIPF 420
Query: 421 LKLRLSADEEELGTDAAQIGEFTYEESTAYIPEPIRSKTSAQMPPPHENIDDKIVGNTDA 480
LKLRLSADEEELGTDAAQIGEFTYEESTAYIPEPIRSKTSAQMPPPHENIDDKIVGNTDA
Sbjct: 421 LKLRLSADEEELGTDAAQIGEFTYEESTAYIPEPIRSKTSAQMPPPHENIDDKIVGNTDA 480
Query: 481 EKNSTPSDASSTKNTDHIV 499
EKNSTPSDASSTKNTDHIV
Sbjct: 481 EKNSTPSDASSTKNTDHIV 499
>6EJH-A nrPDB
Length = 486
Score = 580 bits (1495), Expect = e-166, Method: Compositional matrix adjust.
Identities = 290/480 (60%), Positives = 365/480 (76%), Gaps = 17/480 (3%)
Query: 17 NSLTTDLNTQFDLANMGWIGVASAGVWIMVPGIGLLYSGLSRKKHALSLLWASMMASAVC 76
+ DLN QFD A+M WIG AS VWIM+PG+GLLYSG+SRKKHALSL+WA++MA+ V
Sbjct: 13 DVFKVDLNEQFDRADMVWIGTASVLVWIMIPGVGLLYSGISRKKHALSLMWAALMAACVA 72
Query: 77 IFQWFFWGYSLAFSHNTRGNGFIGTLEFFGFRNVLGAPSSVSSLPDILFAVYQGMFAAVT 136
FQWF+WGYSL F+HN G+ F+GTL+ F ++VLGAPS V ++PDILF +YQGMFAAVT
Sbjct: 73 AFQWFWWGYSLVFAHN--GSVFLGTLQNFCLKDVLGAPSIVKTVPDILFCLYQGMFAAVT 130
Query: 137 GALMLGGACERARLFPMMVFLFLWMTIVYCPIACWVWNAEGWLVKLGSLDYAGGLCVHLT 196
LM G CERARL PMMVFLF+W+T+VYCPIA W W GWLV LG+LD+AGG VH
Sbjct: 131 AILMAGAGCERARLGPMMVFLFIWLTVVYCPIAYWTWGGNGWLVSLGALDFAGGGPVHEN 190
Query: 197 SGHGGLVYALILGKRNDPVTRKGMPKYKPHSVTSVVLGTVFLWFGWMFFNGGSAGNATIR 256
SG L Y+L LGKR+DPV + +PKYKPHSV+S+V+GT+FLWFGW FNGGS GN+++R
Sbjct: 191 SGFAALAYSLWLGKRHDPVAKGKVPKYKPHSVSSIVMGTIFLWFGWYGFNGGSTGNSSMR 250
Query: 257 AWYSIMSTNLAAACGGLTWMVIDYFRCGRKWTTVGLCSGIIAGLVGITPAAGFVPIWSAV 316
+WY+ ++TNLAAA GGLTWM++D+FR G KW+TVGLC G IAGLVGITPAAG+VP++++V
Sbjct: 251 SWYACVNTNLAAATGGLTWMLVDWFRTGGKWSTVGLCMGAIAGLVGITPAAGYVPVYTSV 310
Query: 317 VIGVVTGAGCNLAVDLKSLLRIDDGLDCYSIHGVGGCIGSVLTGIFAADYVNATAGSYIS 376
+ G+V CN AVDLK LL+IDDG+D +++H VGG +G+ +TG+FAADYV G +
Sbjct: 311 IFGIVPAIICNFAVDLKDLLQIDDGMDVWALHCVGGFVGNFMTGLFAADYVAMIDG---T 367
Query: 377 PIDGGWINHHYKQVGYQLAGICAALAWTVTVTSILLLTMNAIPFLKLRLSADEEELGTDA 436
IDGGW+NHH+KQ+GYQLAG CA AW+ TVTSI+LL M+ IPFL++RL DEE LGTD
Sbjct: 368 EIDGGWMNHHWKQLGYQLAGSCAVAAWSFTVTSIILLAMDRIPFLRIRLHEDEEMLGTDL 427
Query: 437 AQIGEFTY-----EESTAYIPEPIRSKTSAQMPPPHENIDDKIVGNTDAEKNSTPSDASS 491
AQIGE+ Y E+ Y+ EPIRS T +Q P PH I G D N+ +A +
Sbjct: 428 AQIGEYAYYADDDPETNPYVLEPIRSTTISQ-PLPH------IDGVADGSSNNDSGEAKN 480
>2B2H-A nrPDB
Length = 399
Score = 264 bits (675), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 163/416 (39%), Positives = 241/416 (57%), Gaps = 32/416 (7%)
Query: 31 NMGWIGVASAGVWIMVPGIGLLYSGLSRKKHALSLLWASMMASAVCIFQWFFWGYSLAFS 90
N+ WI ++A V +MVPG+G Y+G+ R+K+A++++ S ++ + + W F+GYS++F
Sbjct: 5 NVAWILASTALVMLMVPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGYSVSFG 64
Query: 91 HNTRGNGFIGTLEFFGFRNVLGAPSSVSSLPDILFAVYQGMFAAVTGALMLGGACERARL 150
++ +G IG L + V G D+LF +YQ MFAAVT A++ ERA++
Sbjct: 65 NDI--SGIIGGLNYALLSGVKG--------EDLLFMMYQMMFAAVTIAILTSAIAERAKV 114
Query: 151 FPMMVFLFLWMTIVYCPIACWVWNAEGWLVKLGSLDYAGGLCVHLTSGHGGLVYALILGK 210
++ LW+T VY P A W+W GWL KLG+LD+AGG+ VH++SG L A+ +GK
Sbjct: 115 SSFILLSALWLTFVYAPFAHWLWGG-GWLAKLGALDFAGGMVVHISSGFAALAVAMTIGK 173
Query: 211 RNDPVTRKGMPKY--KPHSVTSVVLGTVFLWFGWMFFNGGSAGNATIRAWYSIMSTNLAA 268
R G +Y +PHS+ ++G LWFGW FNGGSA A A +++ TN +A
Sbjct: 174 R------AGFEEYSIEPHSIPLTLIGAALLWFGWFGFNGGSALAANDVAINAVVVTNTSA 227
Query: 269 ACGGLTWMVIDYFRCGRKWTTVGLCSGIIAGLVGITPAAGFVPIWSAVVIGVVTGAGCNL 328
A G WMVI + + K ++G+ SG IAGL ITPAAGFV + A+VIG+V G C L
Sbjct: 228 AVAGFVWMVIGWIKG--KPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYL 285
Query: 329 AVDLKSLLRIDDGLDCYSIHGVGGCIGSVLTGIFAADYVNATAGSYISPIDGGWINHHYK 388
A+D + +ID+ LD ++IHG+GG GSV GI A VN AG + +
Sbjct: 286 AMDFRIKKKIDESLDAWAIHGIGGLWGSVAVGILANPEVNGYAGLLFG---------NPQ 336
Query: 389 QVGYQLAGICAALAWTVTVTSILLLTMNAIPFLKLRLSADEEELGTDAAQIGEFTY 444
+ QL + + A+ VT IL ++A + LR+S+ EE +G D +Q E Y
Sbjct: 337 LLVSQLIAVASTTAYAFLVTLILAKAVDAA--VGLRVSSQEEYVGLDLSQHEEVAY 390
>3C1J-A nrPDB
Length = 424
Score = 204 bits (520), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 147/420 (35%), Positives = 221/420 (52%), Gaps = 22/420 (5%)
Query: 28 DLANMGWIGVASAGVWIM-VPGIGLLYSGLSRKKHALSLLWASMMASAVCIFQWFFWGYS 86
D A+ ++ + +A V M +PGI L Y GL R K+ LS+L + A+ W +GYS
Sbjct: 6 DKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYS 65
Query: 87 LAFSHNTRGNGFIGTLEFFGFRNVLGAPSSVSSLPDILFAVYQGMFAAVTGALMLGGACE 146
LAF GN F G + + +N+ + + S+ + +QG A +T L++G E
Sbjct: 66 LAFG---EGNNFFGNINWLMLKNI-ELTAVMGSIYQYIHVAFQGSAACITVGLIVGALAE 121
Query: 147 RARLFPMMVFLFLWMTIVYCPIACWVWNAEGWLVKLGSLDYAGGLCVHLTSGHGGLVYAL 206
R R +++F+ +W+T+ Y PIA VW G L G+LD+AGG VH+ + GLV A
Sbjct: 122 RIRFSAVLIFVVVWLTLSYIPIAHMVWGG-GLLASHGALDFAGGTVVHINAAIAGLVGAY 180
Query: 207 ILGKRNDPVTRKGMPKYKPHSVTSVVLGTVFLWFGWMFFNGGSAGNATIRAWYSIMSTNL 266
++GKR G +KPH++ V GT L+ GW N GSAG A A + ++T +
Sbjct: 181 LIGKR----VGFGKEAFKPHNLPMVFTGTAILYIGWFGANAGSAGTANEIAALAFVNTVV 236
Query: 267 AAACGGLTWMVIDYFRCGRKWTTVGLCSGIIAGLVGITPAAGFVPIWSAVVIGVVTG-AG 325
A A L W+ ++ G+ + +G CSG IAGLVG+TPA G++ + A++IGVV G AG
Sbjct: 237 ATAAAILGWIFGEWALRGKP-SLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAG 295
Query: 326 CNLAVDLKSLLRIDDGLDCYSIHGVGGCIGSVLTGIFAADYVNATAGSYISPIDGGWINH 385
LK LLR+DD D + +HGV G +G ++TGIFAA + + +G + H
Sbjct: 296 LWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGG-----VGFAEGVTMGH 350
Query: 386 HYKQVGYQLAGICAALAWTVTVTSILLLTMNAIPFLKLRLSADEEELGTDAAQIGEFTYE 445
Q+ QL I + W+ V I + + LR+ ++E G D GE Y
Sbjct: 351 ---QLLVQLESIAITIVWSGVVAFIGYKLADLT--VGLRVPEEQEREGLDVNSHGENAYN 405
>6EU6-A nrPDB
Length = 405
Score = 141 bits (356), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 125/425 (29%), Positives = 211/425 (49%), Gaps = 34/425 (8%)
Query: 24 NTQFDLANMGWIGVASAGVWIMVPGIGLLYSGLSRKKHALSLLWASMMASAVCIFQWFFW 83
N Q ++ ++ W+ +A+ V++M G +G S+ K+A+S+ +++ + + +F
Sbjct: 3 NIQININHL-WVIMAACMVFLMQLGFTSYETGFSQSKNAISIALRNLVDTLISSLVFFSV 61
Query: 84 GYSLAFSHNTRGNGFIGTLEFFGFRNVLGAPSSVSSLPDILFAVYQGMFAAVTGALMLGG 143
G+ F + G IG FF ++ P+++S F +Q +FA+ ++ G
Sbjct: 62 GFGFMFGKSYMG--LIGIDLFFA-NDLALHPNTLSYS----FFFFQMVFASTAATILTGA 114
Query: 144 ACERARLFPMMVFLFLWMTIVYCPIACWVW------NAEGWLVKLGSLDYAGGLCVHLTS 197
ER+ P + + I+Y W W + GWL +LG +D+AG VH
Sbjct: 115 IAERSGFIPNIAGTAFIVAIIYPIFGHWAWGNLFSPDQTGWLKELGFIDFAGATVVHSIG 174
Query: 198 GHGGLVYALILGKRNDPVTRKGMP-KYKPHSVTSVVLGTVFLWFGWMFFNGGSAGNATIR 256
G + A+++G R D G + H+V LGT FLWFGW FNGGS ++
Sbjct: 175 GWFAMAAAIMVGPRIDKYNPDGSSNRIGLHNVPLATLGTFFLWFGWFGFNGGSLLRVSVN 234
Query: 257 AWYSIMSTNLAAACGGLTWMVIDYFRCGRKWTTVG-LCSGIIAGLVGITPAAGFVPIWSA 315
I++TN+AAA G++ ++ Y RK G L + I+AGLV IT ++ V SA
Sbjct: 235 IGLVILNTNMAAASAGVSALIFIY--ATRKRIEAGSLFTAILAGLVAITASSNMVTPVSA 292
Query: 316 VVIGVVTGAGCNLAVD-LKSLLRIDDGLDCYSIHGVGGCIGSVLTGIFAAD-YVNATAGS 373
V IG++TG +A ++ L+IDD + ++HGVGG IG++ IFA Y+ A GS
Sbjct: 293 VAIGLITGILAIIAEGFIEKTLKIDDPVSAIAVHGVGGVIGTLCVAIFAQKSYLLAENGS 352
Query: 374 YISPIDGGWINHHYKQVGYQLAGICAALAWTVTVTSILLLTMNAIPFLKLRLSADEEELG 433
Q+G Q G+ A +W+ + + L + + +LR++ +EE+ G
Sbjct: 353 ------------RMHQLGIQALGVIVAFSWSFGLGMLFFLCLKKVK--RLRVTPEEEKRG 398
Query: 434 TDAAQ 438
+ A+
Sbjct: 399 LNVAE 403
>3HD6-A nrPDB
Length = 490
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 75/299 (25%), Positives = 116/299 (38%), Gaps = 33/299 (11%)
Query: 186 DYAGGLCVHLTSGHGGLVYALILGKRNDPVTRKGMPKYKPHSVTSVVLGTVFLWFGWMFF 245
D G + +H + GL IL +RN +++ + +++ GT+FLW W F
Sbjct: 182 DAGGSMTIHTFGAYFGLTVTRILYRRNLEQSKERQNSVYQSDLFAMI-GTLFLWMYWPSF 240
Query: 246 N------GGSAGNATIRAWYSIMSTNLAAACGGLTWMVIDYFRCGRKWTTVGLCSGIIAG 299
N G S A I + S+ AAC + + K V + + +AG
Sbjct: 241 NSAISYHGDSQHRAAINTYCSL------AACVLTSVAISSALHKKGKLDMVHIQNATLAG 294
Query: 300 LVGITPAAGFVPI-WSAVVIGVVTGAGCNLAVD-----LKSLLRIDDGLDCYSIHGVGGC 353
V + AA + + + A++IG V G L L+S L I D ++HG+ G
Sbjct: 295 GVAVGTAAEMMLMPYGALIIGFVCGIISTLGFVYLTPFLESRLHIQDTCGINNLHGIPGI 354
Query: 354 IGSVLTGIFAADYVNATAGSY-------ISPIDGGWINHHYKQVGYQLAGICAALAWTVT 406
IG ++ + AA G +G W Q +Q+ G+ LA +
Sbjct: 355 IGGIVGAVTAASASLEVYGKEGLVHSFDFQGFNGDWTAR--TQGKFQIYGLLVTLAMALM 412
Query: 407 VTSILLLTMNAIPFLKLRLSADEEELGTDAAQIGEFTYEESTAYIPEPIRSKTSAQMPP 465
I+ L + +PF +E DA E ST YIPE K S P
Sbjct: 413 GGIIVGLILR-LPFWG---QPSDENCFEDAVY-WEMPEGNSTVYIPEDPTFKPSGPSVP 466
>3B9W-A nrPDB
Length = 407
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 82/209 (39%), Gaps = 17/209 (8%)
Query: 121 PDILFAVYQGMFAAVTGALMLGGACERARLFPMMVFLFLWMTIVYCPIACWVWNAEGWLV 180
P + AV FA TG + +G R R+F L L++ VY V + L
Sbjct: 75 PHSVDAVIYAEFAVATGLIAMGAVLGRLRVF-QYALLALFIVPVYLLNEWLVLDNASGLT 133
Query: 181 KLGSLDYAGGLCVHLTSGHGGLVYALIL---GKRNDPVTRKGMPKYKPHSVTSVVLGTVF 237
+ G D AG + +H + GL ++ L +R P+ S +LG++
Sbjct: 134 E-GFQDSAGSIAIHAFGAYFGLGVSIALTTAAQRAQPIESDAT------SDRFSMLGSMV 186
Query: 238 LWFGWMFFNGGSAGNATIRAWYSIMSTNLAAACGGL--TWMVIDYFRCGRKWTTVGLCSG 295
LW W F + + L A CG T+ + F G K + V + +
Sbjct: 187 LWLFWPSF---ATAIVPFEQMPQTIVNTLLALCGATLATYFLSALFHKG-KASIVDMANA 242
Query: 296 IIAGLVGITPAAGFVPIWSAVVIGVVTGA 324
+AG V I V A VIG++ GA
Sbjct: 243 ALAGGVAIGSVCNIVGPVGAFVIGLLGGA 271
>3GC2-A nrPDB
Length = 323
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 8/117 (6%)
Query: 351 GGCIGSVLTGIF--AADYVNATAGSYISPIDGGWINHHYKQVGYQLAGICAALAWTVTVT 408
C + LTG+ AADY A + P D + G ++A + L V
Sbjct: 90 ASCALAELTGVLPEAADYRAAPLCTG-DPDD--LVLRLADMPGEKIAKVKVGLYEAVRDG 146
Query: 409 SILLLTMNAIPFLKLRLSADEEELGTDAAQIGEFT---YEESTAYIPEPIRSKTSAQ 462
++ L + AIP L LRL A+ A Q ++ Y A++ EP +++ ++
Sbjct: 147 MVVNLLLEAIPDLHLRLDANRAWTPLKAQQFAKYVNPDYRARIAFLEEPCKTRDDSR 203
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
5AEX-A nrPDB 709 0.0
6EJH-A nrPDB 614 e-176
3C1J-A nrPDB 420 e-118
2B2H-A nrPDB 408 e-114
6EU6-A nrPDB 375 e-104
Sequences not found previously or not previously below threshold:
3B9W-A nrPDB 67 2e-11
3HD6-A nrPDB 64 1e-10
>5AEX-A nrPDB
Length = 505
Score = 709 bits (1830), Expect = 0.0, Method: Composition-based stats.
Identities = 499/499 (100%), Positives = 499/499 (100%)
Query: 1 MSYNFTGTPTGEGTGGNSLTTDLNTQFDLANMGWIGVASAGVWIMVPGIGLLYSGLSRKK 60
MSYNFTGTPTGEGTGGNSLTTDLNTQFDLANMGWIGVASAGVWIMVPGIGLLYSGLSRKK
Sbjct: 1 MSYNFTGTPTGEGTGGNSLTTDLNTQFDLANMGWIGVASAGVWIMVPGIGLLYSGLSRKK 60
Query: 61 HALSLLWASMMASAVCIFQWFFWGYSLAFSHNTRGNGFIGTLEFFGFRNVLGAPSSVSSL 120
HALSLLWASMMASAVCIFQWFFWGYSLAFSHNTRGNGFIGTLEFFGFRNVLGAPSSVSSL
Sbjct: 61 HALSLLWASMMASAVCIFQWFFWGYSLAFSHNTRGNGFIGTLEFFGFRNVLGAPSSVSSL 120
Query: 121 PDILFAVYQGMFAAVTGALMLGGACERARLFPMMVFLFLWMTIVYCPIACWVWNAEGWLV 180
PDILFAVYQGMFAAVTGALMLGGACERARLFPMMVFLFLWMTIVYCPIACWVWNAEGWLV
Sbjct: 121 PDILFAVYQGMFAAVTGALMLGGACERARLFPMMVFLFLWMTIVYCPIACWVWNAEGWLV 180
Query: 181 KLGSLDYAGGLCVHLTSGHGGLVYALILGKRNDPVTRKGMPKYKPHSVTSVVLGTVFLWF 240
KLGSLDYAGGLCVHLTSGHGGLVYALILGKRNDPVTRKGMPKYKPHSVTSVVLGTVFLWF
Sbjct: 181 KLGSLDYAGGLCVHLTSGHGGLVYALILGKRNDPVTRKGMPKYKPHSVTSVVLGTVFLWF 240
Query: 241 GWMFFNGGSAGNATIRAWYSIMSTNLAAACGGLTWMVIDYFRCGRKWTTVGLCSGIIAGL 300
GWMFFNGGSAGNATIRAWYSIMSTNLAAACGGLTWMVIDYFRCGRKWTTVGLCSGIIAGL
Sbjct: 241 GWMFFNGGSAGNATIRAWYSIMSTNLAAACGGLTWMVIDYFRCGRKWTTVGLCSGIIAGL 300
Query: 301 VGITPAAGFVPIWSAVVIGVVTGAGCNLAVDLKSLLRIDDGLDCYSIHGVGGCIGSVLTG 360
VGITPAAGFVPIWSAVVIGVVTGAGCNLAVDLKSLLRIDDGLDCYSIHGVGGCIGSVLTG
Sbjct: 301 VGITPAAGFVPIWSAVVIGVVTGAGCNLAVDLKSLLRIDDGLDCYSIHGVGGCIGSVLTG 360
Query: 361 IFAADYVNATAGSYISPIDGGWINHHYKQVGYQLAGICAALAWTVTVTSILLLTMNAIPF 420
IFAADYVNATAGSYISPIDGGWINHHYKQVGYQLAGICAALAWTVTVTSILLLTMNAIPF
Sbjct: 361 IFAADYVNATAGSYISPIDGGWINHHYKQVGYQLAGICAALAWTVTVTSILLLTMNAIPF 420
Query: 421 LKLRLSADEEELGTDAAQIGEFTYEESTAYIPEPIRSKTSAQMPPPHENIDDKIVGNTDA 480
LKLRLSADEEELGTDAAQIGEFTYEESTAYIPEPIRSKTSAQMPPPHENIDDKIVGNTDA
Sbjct: 421 LKLRLSADEEELGTDAAQIGEFTYEESTAYIPEPIRSKTSAQMPPPHENIDDKIVGNTDA 480
Query: 481 EKNSTPSDASSTKNTDHIV 499
EKNSTPSDASSTKNTDHIV
Sbjct: 481 EKNSTPSDASSTKNTDHIV 499
>6EJH-A nrPDB
Length = 486
Score = 614 bits (1584), Expect = e-176, Method: Composition-based stats.
Identities = 290/480 (60%), Positives = 365/480 (76%), Gaps = 17/480 (3%)
Query: 17 NSLTTDLNTQFDLANMGWIGVASAGVWIMVPGIGLLYSGLSRKKHALSLLWASMMASAVC 76
+ DLN QFD A+M WIG AS VWIM+PG+GLLYSG+SRKKHALSL+WA++MA+ V
Sbjct: 13 DVFKVDLNEQFDRADMVWIGTASVLVWIMIPGVGLLYSGISRKKHALSLMWAALMAACVA 72
Query: 77 IFQWFFWGYSLAFSHNTRGNGFIGTLEFFGFRNVLGAPSSVSSLPDILFAVYQGMFAAVT 136
FQWF+WGYSL F+HN G+ F+GTL+ F ++VLGAPS V ++PDILF +YQGMFAAVT
Sbjct: 73 AFQWFWWGYSLVFAHN--GSVFLGTLQNFCLKDVLGAPSIVKTVPDILFCLYQGMFAAVT 130
Query: 137 GALMLGGACERARLFPMMVFLFLWMTIVYCPIACWVWNAEGWLVKLGSLDYAGGLCVHLT 196
LM G CERARL PMMVFLF+W+T+VYCPIA W W GWLV LG+LD+AGG VH
Sbjct: 131 AILMAGAGCERARLGPMMVFLFIWLTVVYCPIAYWTWGGNGWLVSLGALDFAGGGPVHEN 190
Query: 197 SGHGGLVYALILGKRNDPVTRKGMPKYKPHSVTSVVLGTVFLWFGWMFFNGGSAGNATIR 256
SG L Y+L LGKR+DPV + +PKYKPHSV+S+V+GT+FLWFGW FNGGS GN+++R
Sbjct: 191 SGFAALAYSLWLGKRHDPVAKGKVPKYKPHSVSSIVMGTIFLWFGWYGFNGGSTGNSSMR 250
Query: 257 AWYSIMSTNLAAACGGLTWMVIDYFRCGRKWTTVGLCSGIIAGLVGITPAAGFVPIWSAV 316
+WY+ ++TNLAAA GGLTWM++D+FR G KW+TVGLC G IAGLVGITPAAG+VP++++V
Sbjct: 251 SWYACVNTNLAAATGGLTWMLVDWFRTGGKWSTVGLCMGAIAGLVGITPAAGYVPVYTSV 310
Query: 317 VIGVVTGAGCNLAVDLKSLLRIDDGLDCYSIHGVGGCIGSVLTGIFAADYVNATAGSYIS 376
+ G+V CN AVDLK LL+IDDG+D +++H VGG +G+ +TG+FAADYV G +
Sbjct: 311 IFGIVPAIICNFAVDLKDLLQIDDGMDVWALHCVGGFVGNFMTGLFAADYVAMIDG---T 367
Query: 377 PIDGGWINHHYKQVGYQLAGICAALAWTVTVTSILLLTMNAIPFLKLRLSADEEELGTDA 436
IDGGW+NHH+KQ+GYQLAG CA AW+ TVTSI+LL M+ IPFL++RL DEE LGTD
Sbjct: 368 EIDGGWMNHHWKQLGYQLAGSCAVAAWSFTVTSIILLAMDRIPFLRIRLHEDEEMLGTDL 427
Query: 437 AQIGEFTY-----EESTAYIPEPIRSKTSAQMPPPHENIDDKIVGNTDAEKNSTPSDASS 491
AQIGE+ Y E+ Y+ EPIRS T +Q P PH I G D N+ +A +
Sbjct: 428 AQIGEYAYYADDDPETNPYVLEPIRSTTISQ-PLPH------IDGVADGSSNNDSGEAKN 480
>3C1J-A nrPDB
Length = 424
Score = 420 bits (1079), Expect = e-118, Method: Composition-based stats.
Identities = 148/420 (35%), Positives = 221/420 (52%), Gaps = 22/420 (5%)
Query: 28 DLANMGWIGVASAGVWIM-VPGIGLLYSGLSRKKHALSLLWASMMASAVCIFQWFFWGYS 86
D A+ ++ + +A V M +PGI L Y GL R K+ LS+L + A+ W +GYS
Sbjct: 6 DKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYS 65
Query: 87 LAFSHNTRGNGFIGTLEFFGFRNVLGAPSSVSSLPDILFAVYQGMFAAVTGALMLGGACE 146
LAF GN F G + + +N+ + + S+ + +QG A +T L++G E
Sbjct: 66 LAFG---EGNNFFGNINWLMLKNI-ELTAVMGSIYQYIHVAFQGSAACITVGLIVGALAE 121
Query: 147 RARLFPMMVFLFLWMTIVYCPIACWVWNAEGWLVKLGSLDYAGGLCVHLTSGHGGLVYAL 206
R R +++F+ +W+T+ Y PIA VW G L G+LD+AGG VH+ + GLV A
Sbjct: 122 RIRFSAVLIFVVVWLTLSYIPIAHMVWGG-GLLASHGALDFAGGTVVHINAAIAGLVGAY 180
Query: 207 ILGKRNDPVTRKGMPKYKPHSVTSVVLGTVFLWFGWMFFNGGSAGNATIRAWYSIMSTNL 266
++GKR G +KPH++ V GT L+ GW N GSAG A A + ++T +
Sbjct: 181 LIGKR----VGFGKEAFKPHNLPMVFTGTAILYIGWFGANAGSAGTANEIAALAFVNTVV 236
Query: 267 AAACGGLTWMVIDYFRCGRKWTTVGLCSGIIAGLVGITPAAGFVPIWSAVVIGVVTG-AG 325
A A L W+ ++ G K + +G CSG IAGLVG+TPA G++ + A++IGVV G AG
Sbjct: 237 ATAAAILGWIFGEWALRG-KPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAG 295
Query: 326 CNLAVDLKSLLRIDDGLDCYSIHGVGGCIGSVLTGIFAADYVNATAGSYISPIDGGWINH 385
LK LLR+DD D + +HGV G +G ++TGIFAA + + +G + H
Sbjct: 296 LWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGG-----VGFAEGVTMGH 350
Query: 386 HYKQVGYQLAGICAALAWTVTVTSILLLTMNAIPFLKLRLSADEEELGTDAAQIGEFTYE 445
Q+ QL I + W+ V I + + LR+ ++E G D GE Y
Sbjct: 351 ---QLLVQLESIAITIVWSGVVAFIGYKLADLT--VGLRVPEEQEREGLDVNSHGENAYN 405
>2B2H-A nrPDB
Length = 399
Score = 408 bits (1048), Expect = e-114, Method: Composition-based stats.
Identities = 163/416 (39%), Positives = 241/416 (57%), Gaps = 32/416 (7%)
Query: 31 NMGWIGVASAGVWIMVPGIGLLYSGLSRKKHALSLLWASMMASAVCIFQWFFWGYSLAFS 90
N+ WI ++A V +MVPG+G Y+G+ R+K+A++++ S ++ + + W F+GYS++F
Sbjct: 5 NVAWILASTALVMLMVPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGYSVSFG 64
Query: 91 HNTRGNGFIGTLEFFGFRNVLGAPSSVSSLPDILFAVYQGMFAAVTGALMLGGACERARL 150
++ +G IG L + V G D+LF +YQ MFAAVT A++ ERA++
Sbjct: 65 NDI--SGIIGGLNYALLSGVKG--------EDLLFMMYQMMFAAVTIAILTSAIAERAKV 114
Query: 151 FPMMVFLFLWMTIVYCPIACWVWNAEGWLVKLGSLDYAGGLCVHLTSGHGGLVYALILGK 210
++ LW+T VY P A W+W GWL KLG+LD+AGG+ VH++SG L A+ +GK
Sbjct: 115 SSFILLSALWLTFVYAPFAHWLWGG-GWLAKLGALDFAGGMVVHISSGFAALAVAMTIGK 173
Query: 211 RNDPVTRKGMPKY--KPHSVTSVVLGTVFLWFGWMFFNGGSAGNATIRAWYSIMSTNLAA 268
R G +Y +PHS+ ++G LWFGW FNGGSA A A +++ TN +A
Sbjct: 174 R------AGFEEYSIEPHSIPLTLIGAALLWFGWFGFNGGSALAANDVAINAVVVTNTSA 227
Query: 269 ACGGLTWMVIDYFRCGRKWTTVGLCSGIIAGLVGITPAAGFVPIWSAVVIGVVTGAGCNL 328
A G WMVI + + K ++G+ SG IAGL ITPAAGFV + A+VIG+V G C L
Sbjct: 228 AVAGFVWMVIGWIKG--KPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYL 285
Query: 329 AVDLKSLLRIDDGLDCYSIHGVGGCIGSVLTGIFAADYVNATAGSYISPIDGGWINHHYK 388
A+D + +ID+ LD ++IHG+GG GSV GI A VN AG + +
Sbjct: 286 AMDFRIKKKIDESLDAWAIHGIGGLWGSVAVGILANPEVNGYAGLLFG---------NPQ 336
Query: 389 QVGYQLAGICAALAWTVTVTSILLLTMNAIPFLKLRLSADEEELGTDAAQIGEFTY 444
+ QL + + A+ VT IL ++A + LR+S+ EE +G D +Q E Y
Sbjct: 337 LLVSQLIAVASTTAYAFLVTLILAKAVDAA--VGLRVSSQEEYVGLDLSQHEEVAY 390
>6EU6-A nrPDB
Length = 405
Score = 375 bits (963), Expect = e-104, Method: Composition-based stats.
Identities = 125/425 (29%), Positives = 209/425 (49%), Gaps = 34/425 (8%)
Query: 24 NTQFDLANMGWIGVASAGVWIMVPGIGLLYSGLSRKKHALSLLWASMMASAVCIFQWFFW 83
N Q ++ ++ W+ +A+ V++M G +G S+ K+A+S+ +++ + + +F
Sbjct: 3 NIQININHL-WVIMAACMVFLMQLGFTSYETGFSQSKNAISIALRNLVDTLISSLVFFSV 61
Query: 84 GYSLAFSHNTRGNGFIGTLEFFGFRNVLGAPSSVSSLPDILFAVYQGMFAAVTGALMLGG 143
G+ F + G IG FF ++ P+++S F +Q +FA+ ++ G
Sbjct: 62 GFGFMFGKSYMG--LIGIDLFFA-NDLALHPNTLSYS----FFFFQMVFASTAATILTGA 114
Query: 144 ACERARLFPMMVFLFLWMTIVYCPIACWVWN------AEGWLVKLGSLDYAGGLCVHLTS 197
ER+ P + + I+Y W W GWL +LG +D+AG VH
Sbjct: 115 IAERSGFIPNIAGTAFIVAIIYPIFGHWAWGNLFSPDQTGWLKELGFIDFAGATVVHSIG 174
Query: 198 GHGGLVYALILGKRNDPVTRKGMP-KYKPHSVTSVVLGTVFLWFGWMFFNGGSAGNATIR 256
G + A+++G R D G + H+V LGT FLWFGW FNGGS ++
Sbjct: 175 GWFAMAAAIMVGPRIDKYNPDGSSNRIGLHNVPLATLGTFFLWFGWFGFNGGSLLRVSVN 234
Query: 257 AWYSIMSTNLAAACGGLTWMVIDYFRCGRKWTTVG-LCSGIIAGLVGITPAAGFVPIWSA 315
I++TN+AAA G++ ++ Y RK G L + I+AGLV IT ++ V SA
Sbjct: 235 IGLVILNTNMAAASAGVSALIFIY--ATRKRIEAGSLFTAILAGLVAITASSNMVTPVSA 292
Query: 316 VVIGVVTGAGCNLAVDL-KSLLRIDDGLDCYSIHGVGGCIGSVLTGIFAAD-YVNATAGS 373
V IG++TG +A + L+IDD + ++HGVGG IG++ IFA Y+ A GS
Sbjct: 293 VAIGLITGILAIIAEGFIEKTLKIDDPVSAIAVHGVGGVIGTLCVAIFAQKSYLLAENGS 352
Query: 374 YISPIDGGWINHHYKQVGYQLAGICAALAWTVTVTSILLLTMNAIPFLKLRLSADEEELG 433
Q+G Q G+ A +W+ + + L + + +LR++ +EE+ G
Sbjct: 353 ------------RMHQLGIQALGVIVAFSWSFGLGMLFFLCLKKVK--RLRVTPEEEKRG 398
Query: 434 TDAAQ 438
+ A+
Sbjct: 399 LNVAE 403
>3B9W-A nrPDB
Length = 407
Score = 67.1 bits (162), Expect = 2e-11, Method: Composition-based stats.
Identities = 55/273 (20%), Positives = 104/273 (38%), Gaps = 17/273 (6%)
Query: 56 LSRKKHALSLLWASMMASAVCIFQWFFWGYSLAFSHNTRGNGFIGTLEFFGFRNVLGAPS 115
+++ +++++L ++ + +G+S + + G
Sbjct: 14 VAQYNYSINILAMLLVGFGFLMVFVRRYGFSATTGTYLVVATGLPLYILLRANGIFGHAL 73
Query: 116 SVSSLPDILFAVYQGMFAAVTGALMLGGACERARLFPMMVFLFLWMTIVYCPIACWVWNA 175
+ S+ +++A FA TG + +G R R+F L L++ VY V +
Sbjct: 74 TPHSVDAVIYA----EFAVATGLIAMGAVLGRLRVFQY-ALLALFIVPVYLLNEWLVLDN 128
Query: 176 EGWLVKLGSLDYAGGLCVHLTSGHGGLVYALIL---GKRNDPVTRKGMPKYKPHSVTSVV 232
L + G D AG + +H + GL ++ L +R P+ +
Sbjct: 129 ASGLTE-GFQDSAGSIAIHAFGAYFGLGVSIALTTAAQRAQPIESDATSD------RFSM 181
Query: 233 LGTVFLWFGWMFFNGGSAGNATIRAWYSIMSTNLAAACGGLTWMVIDYFRCGRKWTTVGL 292
LG++ LW W F +A + +I++T LA L + K + V +
Sbjct: 182 LGSMVLWLFWPSF--ATAIVPFEQMPQTIVNTLLALCGATLATYFLSALFHKGKASIVDM 239
Query: 293 CSGIIAGLVGITPAAGFVPIWSAVVIGVVTGAG 325
+ +AG V I V A VIG++ GA
Sbjct: 240 ANAALAGGVAIGSVCNIVGPVGAFVIGLLGGAI 272
>3HD6-A nrPDB
Length = 490
Score = 64.0 bits (154), Expect = 1e-10, Method: Composition-based stats.
Identities = 85/400 (21%), Positives = 149/400 (37%), Gaps = 37/400 (9%)
Query: 75 VCIFQWFFWGYSLAF----SHNTRGNGFI---GTLEFFGFRNVLGAPSSVSSLPDILFAV 127
V + + +G+ + F + G F+ +++ + + +
Sbjct: 71 VHVMVFVGFGFLMTFLQRYGFSAVGFNFLLAAFGIQWALLMQGWFHFLQDRYIVVGVENL 130
Query: 128 YQGMFAAVTGALMLGGACERARLFPMMVFLFLWMTIVYCPIACWVWNAEGWLVKLGSLDY 187
F + + G + +++ F +T+ + N L L D
Sbjct: 131 INADFCVASVCVAFGAVLGKVSPIQLLIMTFFQVTL-------FAVNEFILLNLLKVKDA 183
Query: 188 AGGLCVHLTSGHGGLVYALILGKRNDPVTRKGMPKYKPHSVTSVVLGTVFLWFGWMFFNG 247
G + +H + GL IL +RN +++ + ++GT+FLW W FN
Sbjct: 184 GGSMTIHTFGAYFGLTVTRILYRRNLEQSKERQNSVYQSDL-FAMIGTLFLWMYWPSFNS 242
Query: 248 GSA--GNATIRAWYSIMSTNLAAACGGLTWMVIDYFR-CGRKWTTVGLCSGIIAGLVGI- 303
+ G++ RA ++T + A LT + I K V + + +AG V +
Sbjct: 243 AISYHGDSQHRAA---INTYCSLAACVLTSVAISSALHKKGKLDMVHIQNATLAGGVAVG 299
Query: 304 TPAAGFVPIWSAVVIGVVTGAG-----CNLAVDLKSLLRIDDGLDCYSIHGVGGCIGSVL 358
T A + + A++IG V G L L+S L I D ++HG+ G IG ++
Sbjct: 300 TAAEMMLMPYGALIIGFVCGIISTLGFVYLTPFLESRLHIQDTCGINNLHGIPGIIGGIV 359
Query: 359 TGIFAAD---YVNATAGSYISPIDGGWINH--HYKQVGYQLAGICAALAWTVTVTSILLL 413
+ AA V G S G+ Q +Q+ G+ LA + I+ L
Sbjct: 360 GAVTAASASLEVYGKEGLVHSFDFQGFNGDWTARTQGKFQIYGLLVTLAMALMGGIIVGL 419
Query: 414 TMNAIPFLKLRLSADEEELGTDAAQIGEFTYEESTAYIPE 453
+ +PF +E D A E ST YIPE
Sbjct: 420 IL-RLPFWG---QPSDENCFED-AVYWEMPEGNSTVYIPE 454
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.317 0.129 0.357
Lambda K H
0.267 0.0394 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,373,282
Number of Sequences: 36641
Number of extensions: 768072
Number of successful extensions: 1876
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1804
Number of HSP's gapped (non-prelim): 36
length of query: 499
length of database: 10,336,785
effective HSP length: 101
effective length of query: 398
effective length of database: 6,636,044
effective search space: 2641145512
effective search space used: 2641145512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.2 bits)