BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P41896 (400 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 5SVA-g nrPDB 825 0.0 4V1O-R nrPDB 400 e-112 5FMF-V nrPDB 184 4e-47 5IY9-T nrPDB 56 3e-08 1BBY-A nrPDB 49 5e-06 1F3U-A nrPDB 37 0.014 3PMO-A nrPDB 28 7.9 >5SVA-g nrPDB Length = 400 Score = 825 bits (2130), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/400 (100%), Positives = 400/400 (100%) Query: 1 MSSGSAGAPALSNNSTNSVAKEKSGNISGDEYLSQEEEVFDGNDIENNETKVYEESLDLD 60 MSSGSAGAPALSNNSTNSVAKEKSGNISGDEYLSQEEEVFDGNDIENNETKVYEESLDLD Sbjct: 1 MSSGSAGAPALSNNSTNSVAKEKSGNISGDEYLSQEEEVFDGNDIENNETKVYEESLDLD 60 Query: 61 LERSNRQVWLVRLPMFLAEKWRDRNNLHGQELGKIRINKDGSKITLLLNENDNDSIPHEY 120 LERSNRQVWLVRLPMFLAEKWRDRNNLHGQELGKIRINKDGSKITLLLNENDNDSIPHEY Sbjct: 61 LERSNRQVWLVRLPMFLAEKWRDRNNLHGQELGKIRINKDGSKITLLLNENDNDSIPHEY 120 Query: 121 DLELTKKVVENEYVFTEQNLKKYQQRKKELEADPEKQRQAYLKKQEREEELKKKQQQQKR 180 DLELTKKVVENEYVFTEQNLKKYQQRKKELEADPEKQRQAYLKKQEREEELKKKQQQQKR Sbjct: 121 DLELTKKVVENEYVFTEQNLKKYQQRKKELEADPEKQRQAYLKKQEREEELKKKQQQQKR 180 Query: 181 RNNRKKFNHRVMTDRDGRDRYIPYVKTIPKKTAIVGTVCHECQVMPSMNDPNYHKIVEQR 240 RNNRKKFNHRVMTDRDGRDRYIPYVKTIPKKTAIVGTVCHECQVMPSMNDPNYHKIVEQR Sbjct: 181 RNNRKKFNHRVMTDRDGRDRYIPYVKTIPKKTAIVGTVCHECQVMPSMNDPNYHKIVEQR 240 Query: 241 RNIVKLNNKERITTLDETVGVTMSHTGMSMRSDNSNFLKVGREKAKSNIKSIRMPKKEIL 300 RNIVKLNNKERITTLDETVGVTMSHTGMSMRSDNSNFLKVGREKAKSNIKSIRMPKKEIL Sbjct: 241 RNIVKLNNKERITTLDETVGVTMSHTGMSMRSDNSNFLKVGREKAKSNIKSIRMPKKEIL 300 Query: 301 DYLFKLFDEYDYWSLKGLKERTRQPEAHLKECLDKVATLVKKGPYAFKYTLRPEYKKLKE 360 DYLFKLFDEYDYWSLKGLKERTRQPEAHLKECLDKVATLVKKGPYAFKYTLRPEYKKLKE Sbjct: 301 DYLFKLFDEYDYWSLKGLKERTRQPEAHLKECLDKVATLVKKGPYAFKYTLRPEYKKLKE 360 Query: 361 EERKATLGELADEQTGSAGDNAQGDAEADLEDEIEMEDVV 400 EERKATLGELADEQTGSAGDNAQGDAEADLEDEIEMEDVV Sbjct: 361 EERKATLGELADEQTGSAGDNAQGDAEADLEDEIEMEDVV 400 >4V1O-R nrPDB Length = 331 Score = 400 bits (1028), Expect = e-112, Method: Compositional matrix adjust. Identities = 191/191 (100%), Positives = 191/191 (100%) Query: 210 KKTAIVGTVCHECQVMPSMNDPNYHKIVEQRRNIVKLNNKERITTLDETVGVTMSHTGMS 269 KKTAIVGTVCHECQVMPSMNDPNYHKIVEQRRNIVKLNNKERITTLDETVGVTMSHTGMS Sbjct: 141 KKTAIVGTVCHECQVMPSMNDPNYHKIVEQRRNIVKLNNKERITTLDETVGVTMSHTGMS 200 Query: 270 MRSDNSNFLKVGREKAKSNIKSIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQPEAHL 329 MRSDNSNFLKVGREKAKSNIKSIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQPEAHL Sbjct: 201 MRSDNSNFLKVGREKAKSNIKSIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQPEAHL 260 Query: 330 KECLDKVATLVKKGPYAFKYTLRPEYKKLKEEERKATLGELADEQTGSAGDNAQGDAEAD 389 KECLDKVATLVKKGPYAFKYTLRPEYKKLKEEERKATLGELADEQTGSAGDNAQGDAEAD Sbjct: 261 KECLDKVATLVKKGPYAFKYTLRPEYKKLKEEERKATLGELADEQTGSAGDNAQGDAEAD 320 Query: 390 LEDEIEMEDVV 400 LEDEIEMEDVV Sbjct: 321 LEDEIEMEDVV 331 Score = 291 bits (746), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 142/142 (100%), Positives = 142/142 (100%) Query: 1 MSSGSAGAPALSNNSTNSVAKEKSGNISGDEYLSQEEEVFDGNDIENNETKVYEESLDLD 60 MSSGSAGAPALSNNSTNSVAKEKSGNISGDEYLSQEEEVFDGNDIENNETKVYEESLDLD Sbjct: 1 MSSGSAGAPALSNNSTNSVAKEKSGNISGDEYLSQEEEVFDGNDIENNETKVYEESLDLD 60 Query: 61 LERSNRQVWLVRLPMFLAEKWRDRNNLHGQELGKIRINKDGSKITLLLNENDNDSIPHEY 120 LERSNRQVWLVRLPMFLAEKWRDRNNLHGQELGKIRINKDGSKITLLLNENDNDSIPHEY Sbjct: 61 LERSNRQVWLVRLPMFLAEKWRDRNNLHGQELGKIRINKDGSKITLLLNENDNDSIPHEY 120 Query: 121 DLELTKKVVENEYVFTEQNLKK 142 DLELTKKVVENEYVFTEQNLKK Sbjct: 121 DLELTKKVVENEYVFTEQNLKK 142 >5FMF-V nrPDB Length = 174 Score = 184 bits (468), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 89/89 (100%), Positives = 89/89 (100%) Query: 54 EESLDLDLERSNRQVWLVRLPMFLAEKWRDRNNLHGQELGKIRINKDGSKITLLLNENDN 113 EESLDLDLERSNRQVWLVRLPMFLAEKWRDRNNLHGQELGKIRINKDGSKITLLLNENDN Sbjct: 1 EESLDLDLERSNRQVWLVRLPMFLAEKWRDRNNLHGQELGKIRINKDGSKITLLLNENDN 60 Query: 114 DSIPHEYDLELTKKVVENEYVFTEQNLKK 142 DSIPHEYDLELTKKVVENEYVFTEQNLKK Sbjct: 61 DSIPHEYDLELTKKVVENEYVFTEQNLKK 89 Score = 148 bits (373), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 69/69 (100%), Positives = 69/69 (100%) Query: 291 SIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQPEAHLKECLDKVATLVKKGPYAFKYT 350 SIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQPEAHLKECLDKVATLVKKGPYAFKYT Sbjct: 106 SIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQPEAHLKECLDKVATLVKKGPYAFKYT 165 Query: 351 LRPEYKKLK 359 LRPEYKKLK Sbjct: 166 LRPEYKKLK 174 Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 18/18 (100%), Positives = 18/18 (100%) Query: 210 KKTAIVGTVCHECQVMPS 227 KKTAIVGTVCHECQVMPS Sbjct: 88 KKTAIVGTVCHECQVMPS 105 >5IY9-T nrPDB Length = 249 Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/179 (25%), Positives = 87/179 (48%), Gaps = 16/179 (8%) Query: 189 HRVMTDRDGRDRYIPYVKTIPKKTAIVGTVCHECQVMPSMNDPNYHKI----VEQRRNIV 244 H + G + ++ K ++ G V + P+ ++ NY ++ +E+ V Sbjct: 81 HPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAASE-NYMRLKRLQIEESSKPV 139 Query: 245 KLNNKERITTLDETVGVTMSHTGMSMRSDNSNFLKVGREKAKSNIKSIRMPKKEILDYLF 304 +L+ + LD+ V T ++ ++ N + K K + K R K+ +LD LF Sbjct: 140 RLSQQ-----LDKVV--TTNYKPVANHQYNIEY----ERKKKEDGKRARADKQHVLDMLF 188 Query: 305 KLFDEYDYWSLKGLKERTRQPEAHLKECLDKVATLVKKGPYAFKYTLRPEYKKLKEEER 363 F+++ Y++LK L + T+QP +LKE L ++ KG + + L+PEY+ + EE+ Sbjct: 189 SAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHKNTWELKPEYRHYQGEEK 247 Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 15/96 (15%) Query: 57 LDLDLERSNRQVWLVRLPMFLAEKWRDRNNLHGQELGKIRINKDGSK--ITLLLNE---N 111 LDL + N VWLV++P +L+++W + E+GK+RI K + ++ LNE N Sbjct: 7 LDLTGAKQNTGVWLVKVPKYLSQQWAKASGR--GEVGKLRIAKTQGRTEVSFTLNEDLAN 64 Query: 112 DND--------SIPHEYDLELTKKVVENEYVFTEQN 139 +D S P E+ L + VFTE + Sbjct: 65 IHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESS 100 >1BBY-A nrPDB Length = 69 Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 40/64 (62%) Query: 293 RMPKKEILDYLFKLFDEYDYWSLKGLKERTRQPEAHLKECLDKVATLVKKGPYAFKYTLR 352 R K+ +LD LF F+++ Y++LK L + T+QP +LKE L ++ KG + + L+ Sbjct: 3 RADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHKNTWELK 62 Query: 353 PEYK 356 PEY+ Sbjct: 63 PEYR 66 >1F3U-A nrPDB Length = 118 Score = 37.0 bits (84), Expect = 0.014, Method: Composition-based stats. Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 15/99 (15%) Query: 57 LDLDLERSNRQVWLVRLPMFLAEKWRDRNNLHGQELGKIRINKDG--SKITLLLNE---N 111 LDL + N VWLV++P +L+++W + E+GK+RI K ++++ LNE N Sbjct: 6 LDLTGAKQNTGVWLVKVPKYLSQQWAKASGR--GEVGKLRIAKTQGRTEVSFTLNEDLAN 63 Query: 112 DND--------SIPHEYDLELTKKVVENEYVFTEQNLKK 142 +D S P E+ L + VFTE + K Sbjct: 64 IHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDK 102 >3PMO-A nrPDB Length = 372 Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust. Identities = 14/47 (29%), Positives = 22/47 (46%) Query: 333 LDKVATLVKKGPYAFKYTLRPEYKKLKEEERKATLGELADEQTGSAG 379 + +ATL + GP + P+Y+K E R + A + G AG Sbjct: 47 IQGLATLQEAGPAQLSFLANPQYRKYLPESRAGAVLLTAADADGFAG 93 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 5SVA-g nrPDB 646 0.0 4V1O-R nrPDB 322 1e-88 5IY9-T nrPDB 239 2e-63 5FMF-V nrPDB 156 2e-38 1BBY-A nrPDB 125 4e-29 Sequences not found previously or not previously below threshold: 1F3U-A nrPDB 126 3e-29 1EUV-A nrPDB 34 0.13 1F5N-A nrPDB 34 0.14 6EM1-t nrPDB 33 0.28 6NCZ-A nrPDB 32 0.42 6HQA-B nrPDB 32 0.43 5ZLU-EE nrPDB 32 0.57 5ZWM-J nrPDB 32 0.63 3DVA-A nrPDB 32 0.66 3RQF-A nrPDB 31 0.95 3N98-A nrPDB 29 2.8 6ELZ-w nrPDB 29 2.8 3J92-h nrPDB 29 3.3 3OBV-E nrPDB 29 5.2 5NRL-N nrPDB 28 6.9 >5SVA-g nrPDB Length = 400 Score = 646 bits (1666), Expect = 0.0, Method: Composition-based stats. Identities = 400/400 (100%), Positives = 400/400 (100%) Query: 1 MSSGSAGAPALSNNSTNSVAKEKSGNISGDEYLSQEEEVFDGNDIENNETKVYEESLDLD 60 MSSGSAGAPALSNNSTNSVAKEKSGNISGDEYLSQEEEVFDGNDIENNETKVYEESLDLD Sbjct: 1 MSSGSAGAPALSNNSTNSVAKEKSGNISGDEYLSQEEEVFDGNDIENNETKVYEESLDLD 60 Query: 61 LERSNRQVWLVRLPMFLAEKWRDRNNLHGQELGKIRINKDGSKITLLLNENDNDSIPHEY 120 LERSNRQVWLVRLPMFLAEKWRDRNNLHGQELGKIRINKDGSKITLLLNENDNDSIPHEY Sbjct: 61 LERSNRQVWLVRLPMFLAEKWRDRNNLHGQELGKIRINKDGSKITLLLNENDNDSIPHEY 120 Query: 121 DLELTKKVVENEYVFTEQNLKKYQQRKKELEADPEKQRQAYLKKQEREEELKKKQQQQKR 180 DLELTKKVVENEYVFTEQNLKKYQQRKKELEADPEKQRQAYLKKQEREEELKKKQQQQKR Sbjct: 121 DLELTKKVVENEYVFTEQNLKKYQQRKKELEADPEKQRQAYLKKQEREEELKKKQQQQKR 180 Query: 181 RNNRKKFNHRVMTDRDGRDRYIPYVKTIPKKTAIVGTVCHECQVMPSMNDPNYHKIVEQR 240 RNNRKKFNHRVMTDRDGRDRYIPYVKTIPKKTAIVGTVCHECQVMPSMNDPNYHKIVEQR Sbjct: 181 RNNRKKFNHRVMTDRDGRDRYIPYVKTIPKKTAIVGTVCHECQVMPSMNDPNYHKIVEQR 240 Query: 241 RNIVKLNNKERITTLDETVGVTMSHTGMSMRSDNSNFLKVGREKAKSNIKSIRMPKKEIL 300 RNIVKLNNKERITTLDETVGVTMSHTGMSMRSDNSNFLKVGREKAKSNIKSIRMPKKEIL Sbjct: 241 RNIVKLNNKERITTLDETVGVTMSHTGMSMRSDNSNFLKVGREKAKSNIKSIRMPKKEIL 300 Query: 301 DYLFKLFDEYDYWSLKGLKERTRQPEAHLKECLDKVATLVKKGPYAFKYTLRPEYKKLKE 360 DYLFKLFDEYDYWSLKGLKERTRQPEAHLKECLDKVATLVKKGPYAFKYTLRPEYKKLKE Sbjct: 301 DYLFKLFDEYDYWSLKGLKERTRQPEAHLKECLDKVATLVKKGPYAFKYTLRPEYKKLKE 360 Query: 361 EERKATLGELADEQTGSAGDNAQGDAEADLEDEIEMEDVV 400 EERKATLGELADEQTGSAGDNAQGDAEADLEDEIEMEDVV Sbjct: 361 EERKATLGELADEQTGSAGDNAQGDAEADLEDEIEMEDVV 400 >4V1O-R nrPDB Length = 331 Score = 322 bits (826), Expect = 1e-88, Method: Composition-based stats. Identities = 220/407 (54%), Positives = 245/407 (60%), Gaps = 83/407 (20%) Query: 1 MSSGSAGAPALSNNSTNSVAKEKSGNISGDEYLSQEEEVFDGNDIENNETKVYEESLDLD 60 MSSGSAGAPALSNNSTNSVAKEKSGNISGDEYLSQEEEVFDGNDIENNETKVYEESLDLD Sbjct: 1 MSSGSAGAPALSNNSTNSVAKEKSGNISGDEYLSQEEEVFDGNDIENNETKVYEESLDLD 60 Query: 61 LERSNRQVWLVRLPMFLAEKWRDRNNLHGQELGKIRINKDGSKITLLLNENDNDSIPHEY 120 LERSNRQVWLVRLPMFLAEKWRDRNNLHGQELGKIRINKDGSKITLLLNENDNDSIPHEY Sbjct: 61 LERSNRQVWLVRLPMFLAEKWRDRNNLHGQELGKIRINKDGSKITLLLNENDNDSIPHEY 120 Query: 121 DLELTKKVVENEYVFTEQNLKKYQ---QRKKELEADPEKQRQAYLKKQEREEELKKKQQQ 177 DLELTKKVVENEYVFTEQNLKK E + P Y K E Sbjct: 121 DLELTKKVVENEYVFTEQNLKKTAIVGTVCHECQVMPSMNDPNYHKIVE----------- 169 Query: 178 QKRRNNRKKFNHRVMTDRDGRDRYIPYVKTIPKKTAIVGTVCHECQVMPSMNDPNYHKIV 237 +RRN + + ++R +T+ + G ++ N+ K+ Sbjct: 170 -QRRN---------IVKLNNKERITTLDETVGVTMSHTGMSMR-------SDNSNFLKVG 212 Query: 238 EQRR----NIVKLNNKERITTLDETVGVTMSHTGMSMRSDNSNFLKVGREKAKSNIKSIR 293 ++ +++ KE + L + + + K + Sbjct: 213 REKAKSNIKSIRMPKKEILDYLFKLFD---------------EYDYWSLKGLKERTRQPE 257 Query: 294 MPKKEILDYLFKLFDEYDYWSLKGLKERTRQPEAHLKECLDKVATLVKKGPYAFKYTLRP 353 KE LD + L + Y AFKYTLRP Sbjct: 258 AHLKECLDKVATLVKKGPY---------------------------------AFKYTLRP 284 Query: 354 EYKKLKEEERKATLGELADEQTGSAGDNAQGDAEADLEDEIEMEDVV 400 EYKKLKEEERKATLGELADEQTGSAGDNAQGDAEADLEDEIEMEDVV Sbjct: 285 EYKKLKEEERKATLGELADEQTGSAGDNAQGDAEADLEDEIEMEDVV 331 >5IY9-T nrPDB Length = 249 Score = 239 bits (609), Expect = 2e-63, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 87/179 (48%), Gaps = 16/179 (8%) Query: 189 HRVMTDRDGRDRYIPYVKTIPKKTAIVGTVCHECQVMPSMNDPNYHKI----VEQRRNIV 244 H + G + ++ K ++ G V + P+ ++ NY ++ +E+ V Sbjct: 81 HPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAASE-NYMRLKRLQIEESSKPV 139 Query: 245 KLNNKERITTLDETVGVTMSHTGMSMRSDNSNFLKVGREKAKSNIKSIRMPKKEILDYLF 304 +L+ + LD+ V T ++ ++ N + K K + K R K+ +LD LF Sbjct: 140 RLSQQ-----LDKVV--TTNYKPVANHQYNIEY----ERKKKEDGKRARADKQHVLDMLF 188 Query: 305 KLFDEYDYWSLKGLKERTRQPEAHLKECLDKVATLVKKGPYAFKYTLRPEYKKLKEEER 363 F+++ Y++LK L + T+QP +LKE L ++ KG + + L+PEY+ + EE+ Sbjct: 189 SAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHKNTWELKPEYRHYQGEEK 247 Score = 115 bits (287), Expect = 4e-26, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 24/157 (15%) Query: 57 LDLDLERSNRQVWLVRLPMFLAEKWRDRNNLHGQELGKIRINKDGSK--ITLLLNE---N 111 LDL + N VWLV++P +L+++W + E+GK+RI K + ++ LNE N Sbjct: 7 LDLTGAKQNTGVWLVKVPKYLSQQWAKASGR--GEVGKLRIAKTQGRTEVSFTLNEDLAN 64 Query: 112 DND--------SIPHEYDLELTKKVVENEYVFTEQNLKKYQ------QRKKELEADPEK- 156 +D S P E+ L + VFTE + K QR + A E Sbjct: 65 IHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAASENY 124 Query: 157 QRQAYLKKQEREEELKKKQQQQK--RRNNRKKFNHRV 191 R L+ +E + ++ QQ K N + NH+ Sbjct: 125 MRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQY 161 >5FMF-V nrPDB Length = 174 Score = 156 bits (393), Expect = 2e-38, Method: Composition-based stats. Identities = 89/89 (100%), Positives = 89/89 (100%) Query: 54 EESLDLDLERSNRQVWLVRLPMFLAEKWRDRNNLHGQELGKIRINKDGSKITLLLNENDN 113 EESLDLDLERSNRQVWLVRLPMFLAEKWRDRNNLHGQELGKIRINKDGSKITLLLNENDN Sbjct: 1 EESLDLDLERSNRQVWLVRLPMFLAEKWRDRNNLHGQELGKIRINKDGSKITLLLNENDN 60 Query: 114 DSIPHEYDLELTKKVVENEYVFTEQNLKK 142 DSIPHEYDLELTKKVVENEYVFTEQNLKK Sbjct: 61 DSIPHEYDLELTKKVVENEYVFTEQNLKK 89 Score = 118 bits (295), Expect = 4e-27, Method: Composition-based stats. Identities = 69/69 (100%), Positives = 69/69 (100%) Query: 291 SIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQPEAHLKECLDKVATLVKKGPYAFKYT 350 SIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQPEAHLKECLDKVATLVKKGPYAFKYT Sbjct: 106 SIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQPEAHLKECLDKVATLVKKGPYAFKYT 165 Query: 351 LRPEYKKLK 359 LRPEYKKLK Sbjct: 166 LRPEYKKLK 174 >1F3U-A nrPDB Length = 118 Score = 126 bits (315), Expect = 3e-29, Method: Composition-based stats. Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 15/99 (15%) Query: 57 LDLDLERSNRQVWLVRLPMFLAEKWRDRNNLHGQELGKIRINKDGSK--ITLLLNE---N 111 LDL + N VWLV++P +L+++W + E+GK+RI K + ++ LNE N Sbjct: 6 LDLTGAKQNTGVWLVKVPKYLSQQWAKASGR--GEVGKLRIAKTQGRTEVSFTLNEDLAN 63 Query: 112 DND--------SIPHEYDLELTKKVVENEYVFTEQNLKK 142 +D S P E+ L + VFTE + K Sbjct: 64 IHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDK 102 Score = 66.0 bits (159), Expect = 3e-11, Method: Composition-based stats. Identities = 6/39 (15%), Positives = 14/39 (35%) Query: 189 HRVMTDRDGRDRYIPYVKTIPKKTAIVGTVCHECQVMPS 227 H + G + ++ K ++ G V + P+ Sbjct: 80 HPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPA 118 >1BBY-A nrPDB Length = 69 Score = 125 bits (313), Expect = 4e-29, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 41/69 (59%) Query: 291 SIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQPEAHLKECLDKVATLVKKGPYAFKYT 350 R K+ +LD LF F+++ Y++LK L + T+QP +LKE L ++ KG + + Sbjct: 1 RARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHKNTWE 60 Query: 351 LRPEYKKLK 359 L+PEY+ + Sbjct: 61 LKPEYRHYQ 69 >1EUV-A nrPDB Length = 221 Score = 34.0 bits (76), Expect = 0.13, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 13/102 (12%) Query: 272 SDNSNFLKVGREKAKSNIKSIRMPKKEILDYLFKLFD----EYDYWSLKGLKERTRQPEA 327 + NS F E+ ++ KK +D L K+F +W+L G+ + ++ Sbjct: 70 AFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWAL-GIIDLKKKTIG 128 Query: 328 HLKECLDKVATLVKKGPYAFKYTLRPEYKKLKEEERKATLGE 369 ++ GP A + + + +K EE K T+GE Sbjct: 129 YVDSL--------SNGPNAMSFAILTDLQKYVMEESKHTIGE 162 >1F5N-A nrPDB Length = 592 Score = 33.6 bits (75), Expect = 0.14, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 24/42 (57%) Query: 137 EQNLKKYQQRKKELEADPEKQRQAYLKKQEREEELKKKQQQQ 178 EQ + YQ+ K+L E R LK+QER LK ++Q+Q Sbjct: 518 EQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQ 559 >6EM1-t nrPDB Length = 322 Score = 32.8 bits (73), Expect = 0.28, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 6/48 (12%) Query: 146 RKKELEADPE----KQRQAYLKKQEREEELKKKQQQQ--KRRNNRKKF 187 + + L ++PE K+R A + ER+E KKK+++Q K+R+N+ KF Sbjct: 8 KAQTLNSNPEILLRKRRNADRTRIERQELAKKKREEQIKKKRSNKNKF 55 >6NCZ-A nrPDB Length = 610 Score = 32.1 bits (71), Expect = 0.42, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 24/38 (63%) Query: 140 LKKYQQRKKELEADPEKQRQAYLKKQEREEELKKKQQQ 177 ++KY RK L D + ++ A+ Q+ EELK+K+Q+ Sbjct: 559 IQKYYNRKGLLSEDKKYRKPAFYVLQKFYEELKRKEQE 596 >6HQA-B nrPDB Length = 722 Score = 32.1 bits (71), Expect = 0.43, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 54/137 (39%), Gaps = 15/137 (10%) Query: 111 NDNDSIPHEYDLELTKKVVENEYVFTEQNLKKYQQRKKELEADPEKQRQAYLKKQEREEE 170 N ++ I + L T E + + K + +L+ DPE Y K+ E E + Sbjct: 251 NLSEGIVELHTLNNTSIGGEQREISSVDAFNKKPVKLGKLQVDPE-----YSKELEAELK 305 Query: 171 LKKKQQQQKRRNNRKKFNHRVMTDRDGRDRYIPYVKTIPKKTAIVGTVCHECQVMPSMND 230 LK + +Q +KK + ++ + + P + P K + + + + Sbjct: 306 LKDEHEQAA----QKKVSTTLLEEYRENFKVDPSDENNPSKDTL------PLPLKSAQDL 355 Query: 231 PNYHKIVEQRRNIVKLN 247 N +++ R +KL+ Sbjct: 356 RNDIAMIQDSRAKIKLS 372 >5ZLU-EE nrPDB Length = 497 Score = 31.7 bits (70), Expect = 0.57, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 14/121 (11%) Query: 143 YQQRKKELEADPEKQRQA-----YLKKQER-EEELKKKQQQQKRRNNRKKFNH-RVMTDR 195 Y ++K+E E+Q QA +K++ER E +++K+QQ R +N+KK + T+ Sbjct: 184 YLRQKEE-----ERQHQAVEYELMMKERERLESAVQEKRQQANRLDNKKKGEKSKNSTES 238 Query: 196 DGRDRYIPYVKTIPKKT-AIVGTVCHECQVMPSMNDPNYHKIVE-QRRNIVKLNNKERIT 253 GR + T +K ++ + + P + + + ++ + ++L+NK IT Sbjct: 239 AGRLGHAKMTGTKQRKLYQAAKSMEKRLAALEDIQAPEHLRSIRFRQSSALELHNKFPIT 298 Query: 254 T 254 Sbjct: 299 A 299 >5ZWM-J nrPDB Length = 469 Score = 31.7 bits (70), Expect = 0.63, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 4/51 (7%) Query: 137 EQNLKKYQQRKKELEADPEKQRQAYLKKQEREEELKKKQQQQKRRNNRKKF 187 E+ LK YQ K E+ ++R L+KQ+ EEELK+K +Q++ +++K Sbjct: 87 ERGLKFYQ--KGEISKRIAQERT--LQKQQEEEELKRKLKQEEDEKDKRKL 133 >3DVA-A nrPDB Length = 369 Score = 31.7 bits (70), Expect = 0.66, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 2/62 (3%) Query: 266 TGMSMRSDNSNFLKVGREKAKSNIKSI-RMPKKEILDYLFKLFDEYDYWSLKGLKERTRQ 324 G+ + +N ++ +E+ K IK PK+++ D + +F+E + +LK E ++ Sbjct: 307 KGLWSEEEENNVIEQAKEEIKEAIKKADETPKQKVTDLISIMFEELPF-NLKEQYEIYKE 365 Query: 325 PE 326 E Sbjct: 366 KE 367 >3RQF-A nrPDB Length = 214 Score = 30.9 bits (68), Expect = 0.95, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 48/130 (36%), Gaps = 12/130 (9%) Query: 226 PSMNDPNYHKIVEQRRNIVKLNNKERITTLDETVGVT----------MSHTGMSMRSDNS 275 P + KI+E++ V D+ ++ +++ S Sbjct: 58 PGLTQDIIMKILEKKSVEVNFTESLLRMAADDVEEYMIERPEPEFQDLNEKARALKQILS 117 Query: 276 NFLKVGREKAK--SNIKSIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQPEAHLKECL 333 ++ + IK I KE+LD + +F +Y Y + + L+ + ++ + K Sbjct: 118 KIPDEINDRVRFLQTIKDIASAIKELLDTVNNVFKKYQYQNRRALEHQKKEFVKYSKSFS 177 Query: 334 DKVATLVKKG 343 D + T K G Sbjct: 178 DTLKTYFKDG 187 >3N98-A nrPDB Length = 562 Score = 29.4 bits (64), Expect = 2.8, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 10/63 (15%) Query: 260 GVTMSHTGMSMRSDNSNFLKVG-----REKAK---SNIKSIRMPKKEILDYLFKLFDE-Y 310 G+ ++ T + ++K K K ++KS + +K + Y+ F + Y Sbjct: 55 GIVINVTPVLAEQLTDEYMKKAFEEYMERKLKAMEEDLKSGKYDEKAV-SYMLNYFRKVY 113 Query: 311 DYW 313 DYW Sbjct: 114 DYW 116 >6ELZ-w nrPDB Length = 841 Score = 29.4 bits (64), Expect = 2.8, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 28/43 (65%) Query: 140 LKKYQQRKKELEADPEKQRQAYLKKQEREEELKKKQQQQKRRN 182 L + +Q +K+L+ EKQR +++ R+ E+K+K+ Q+ + N Sbjct: 346 LTEEEQIEKDLQGLQEKQRLNVKRERRRKNEMKQKELQRMQMN 388 >3J92-h nrPDB Length = 123 Score = 29.0 bits (63), Expect = 3.3, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 2/47 (4%) Query: 137 EQNLKKYQQRKK--ELEADPEKQRQAYLKKQEREEELKKKQQQQKRR 181 ++NL+K+ + KK L+ P+K R + + EE LK K+QQ+K R Sbjct: 66 KENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKER 112 >3OBV-E nrPDB Length = 457 Score = 28.6 bits (62), Expect = 5.2, Method: Composition-based stats. Identities = 15/39 (38%), Positives = 27/39 (69%), Gaps = 3/39 (7%) Query: 142 KYQQRKKELEADPEKQRQAYLKKQEREEELKKKQQQQKR 180 K Q+++E E EK R+A L K++ E+E +KQQ++++ Sbjct: 381 KENQKRRETE---EKMRRAKLAKEKAEKERLEKQQKREQ 416 >5NRL-N nrPDB Length = 291 Score = 28.2 bits (61), Expect = 6.9, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 4/136 (2%) Query: 73 LPMFLAEKWRDRNNLHGQELGKIRINKDGSKITLLLNENDNDSIPHEY----DLELTKKV 128 LP L K + N ++ + +D +++ EN +I + E K Sbjct: 97 LPRPLFMKKKANNLQKATKIDQPWNAQDDARVLQTKKENMIKNIDKANQVAKNYETMKLR 156 Query: 129 VENEYVFTEQNLKKYQQRKKELEADPEKQRQAYLKKQEREEELKKKQQQQKRRNNRKKFN 188 + Y E+ +K+ E D EK+RQ + ++Q ++ ++ Q K+R + + Sbjct: 157 LNTNYSTNEELIKQCLLLDDNDEVDSEKERQKWFERQNERKQKHRRIQLAKQRESEEYEA 216 Query: 189 HRVMTDRDGRDRYIPY 204 R + G+D Y Sbjct: 217 KRFEAMQKGKDGNTKY 232 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.304 0.124 0.319 Lambda K H 0.267 0.0384 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,593,186 Number of Sequences: 36641 Number of extensions: 586640 Number of successful extensions: 2320 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 56 Number of HSP's successfully gapped in prelim test: 74 Number of HSP's that attempted gapping in prelim test: 1972 Number of HSP's gapped (non-prelim): 259 length of query: 400 length of database: 10,336,785 effective HSP length: 99 effective length of query: 301 effective length of database: 6,709,326 effective search space: 2019507126 effective search space used: 2019507126 T: 11 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.4 bits) S2: 60 (27.8 bits)