BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P41895 (735 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 6GYL-Q nrPDB 1504 0.0 4V1O-Q nrPDB 1228 0.0 5FMF-U nrPDB 192 5e-49 3T0Q-A nrPDB 34 0.25 3LLM-A nrPDB 33 0.49 2QZ4-A nrPDB 30 3.1 5IYD-S nrPDB 30 4.4 1F3U-B nrPDB 29 6.8 >6GYL-Q nrPDB Length = 735 Score = 1504 bits (3894), Expect = 0.0, Method: Compositional matrix adjust. Identities = 735/735 (100%), Positives = 735/735 (100%) Query: 1 MSRRNPPGSRNGGGPTNASPFIKRDRMRRNFLRMRMGQNGSNSSSPGVPNGDNSRGSLVK 60 MSRRNPPGSRNGGGPTNASPFIKRDRMRRNFLRMRMGQNGSNSSSPGVPNGDNSRGSLVK Sbjct: 1 MSRRNPPGSRNGGGPTNASPFIKRDRMRRNFLRMRMGQNGSNSSSPGVPNGDNSRGSLVK 60 Query: 61 KDDPEYAEEREKMLLQIGVEADAGRSNVKVKDEDPNEYNEFPLRAIPKEDLENMRTHLLK 120 KDDPEYAEEREKMLLQIGVEADAGRSNVKVKDEDPNEYNEFPLRAIPKEDLENMRTHLLK Sbjct: 61 KDDPEYAEEREKMLLQIGVEADAGRSNVKVKDEDPNEYNEFPLRAIPKEDLENMRTHLLK 120 Query: 121 FQSKKKINPVTDFHLPVRLHRKDTRNLQFQLTRAEIVQRQKEISEYKKKAEQERSTPNSG 180 FQSKKKINPVTDFHLPVRLHRKDTRNLQFQLTRAEIVQRQKEISEYKKKAEQERSTPNSG Sbjct: 121 FQSKKKINPVTDFHLPVRLHRKDTRNLQFQLTRAEIVQRQKEISEYKKKAEQERSTPNSG 180 Query: 181 GMNKSGTVSLNNTVKDGSQTPTVDSVTKDNTANGVNSSIPTVTGSSVPPASPTTVSAVES 240 GMNKSGTVSLNNTVKDGSQTPTVDSVTKDNTANGVNSSIPTVTGSSVPPASPTTVSAVES Sbjct: 181 GMNKSGTVSLNNTVKDGSQTPTVDSVTKDNTANGVNSSIPTVTGSSVPPASPTTVSAVES 240 Query: 241 NGLSNGSTSAANGLDGNASTANLANGRPLVTKLEDAGPAEDPTKVGMVKYDGKEVTNEPE 300 NGLSNGSTSAANGLDGNASTANLANGRPLVTKLEDAGPAEDPTKVGMVKYDGKEVTNEPE Sbjct: 241 NGLSNGSTSAANGLDGNASTANLANGRPLVTKLEDAGPAEDPTKVGMVKYDGKEVTNEPE 300 Query: 301 FEEGTMDPLADVAPDGGGRAKRGNLRRKTRQLKVLDENAKKLRFEEFYPWVMEDFDGYNT 360 FEEGTMDPLADVAPDGGGRAKRGNLRRKTRQLKVLDENAKKLRFEEFYPWVMEDFDGYNT Sbjct: 301 FEEGTMDPLADVAPDGGGRAKRGNLRRKTRQLKVLDENAKKLRFEEFYPWVMEDFDGYNT 360 Query: 361 WVGSYEAGNSDSYVLLSVEDDGSFTMIPADKVYKFTARNKYATLTIDEAEKRMDKKSGEV 420 WVGSYEAGNSDSYVLLSVEDDGSFTMIPADKVYKFTARNKYATLTIDEAEKRMDKKSGEV Sbjct: 361 WVGSYEAGNSDSYVLLSVEDDGSFTMIPADKVYKFTARNKYATLTIDEAEKRMDKKSGEV 420 Query: 421 PRWLMKHLDNIGTTTTRYDRTRRKLKAVADQQAMDEDDRDDNSEVELDYDEEFADDEEAP 480 PRWLMKHLDNIGTTTTRYDRTRRKLKAVADQQAMDEDDRDDNSEVELDYDEEFADDEEAP Sbjct: 421 PRWLMKHLDNIGTTTTRYDRTRRKLKAVADQQAMDEDDRDDNSEVELDYDEEFADDEEAP 480 Query: 481 IIDGNEQENKESEQRIKKEMLQANAMGLRDEEAPSENEEDELFGEKKIDEDGERIKKALQ 540 IIDGNEQENKESEQRIKKEMLQANAMGLRDEEAPSENEEDELFGEKKIDEDGERIKKALQ Sbjct: 481 IIDGNEQENKESEQRIKKEMLQANAMGLRDEEAPSENEEDELFGEKKIDEDGERIKKALQ 540 Query: 541 KTELAALYSSDENEINPYLSESDIENKENESPVKKEEDSDTLSKSKRSSPKKQQKKATNA 600 KTELAALYSSDENEINPYLSESDIENKENESPVKKEEDSDTLSKSKRSSPKKQQKKATNA Sbjct: 541 KTELAALYSSDENEINPYLSESDIENKENESPVKKEEDSDTLSKSKRSSPKKQQKKATNA 600 Query: 601 HVHKEPTLRVKSIKNCVIILKGDKKILKSFPEGEWNPQTTKAVDSSNNASNTVPSPIKQE 660 HVHKEPTLRVKSIKNCVIILKGDKKILKSFPEGEWNPQTTKAVDSSNNASNTVPSPIKQE Sbjct: 601 HVHKEPTLRVKSIKNCVIILKGDKKILKSFPEGEWNPQTTKAVDSSNNASNTVPSPIKQE 660 Query: 661 EGLNSTVAEREETPAPTITEKDIIEAIGDGKVNIKEFGKFIRRKYPGAENKKLMFAIVKK 720 EGLNSTVAEREETPAPTITEKDIIEAIGDGKVNIKEFGKFIRRKYPGAENKKLMFAIVKK Sbjct: 661 EGLNSTVAEREETPAPTITEKDIIEAIGDGKVNIKEFGKFIRRKYPGAENKKLMFAIVKK 720 Query: 721 LCRKVGNDHMELKKE 735 LCRKVGNDHMELKKE Sbjct: 721 LCRKVGNDHMELKKE 735 >4V1O-Q nrPDB Length = 734 Score = 1228 bits (3177), Expect = 0.0, Method: Compositional matrix adjust. Identities = 638/735 (86%), Positives = 670/735 (91%), Gaps = 5/735 (0%) Query: 1 MSRRNPPGSRNGGGPTNASPFIKRDRMRRNFLRMRMGQNGSNSSSPGVPNGDNSRGSLVK 60 MSRRNPPGSRNGGGPTNASPFIKRDRMRRNFLRMRMGQN SNSSS V N + SRGSLVK Sbjct: 1 MSRRNPPGSRNGGGPTNASPFIKRDRMRRNFLRMRMGQNSSNSSSSSVLNENGSRGSLVK 60 Query: 61 KDDPEYAEEREKMLLQIGVEADAGRSNVKVKDEDPNEYNEFPLRAIPKEDLENMRTHLLK 120 KDDPEYAEERE+MLLQIGVEADAGRSNVKVKDEDPNEYNEFPLRAIPKEDLENMRTHLLK Sbjct: 61 KDDPEYAEERERMLLQIGVEADAGRSNVKVKDEDPNEYNEFPLRAIPKEDLENMRTHLLK 120 Query: 121 FQSKKKINPVTDFHLPVRLHRKDTRNLQFQLTRAEIVQRQKEISEYKKKAEQERSTPNSG 180 FQSKKKINPVTDFHLPVRLHRKD+RN QFQLTRAEIVQ Q+EI EYKKKA+QERSTP G Sbjct: 121 FQSKKKINPVTDFHLPVRLHRKDSRNFQFQLTRAEIVQSQREICEYKKKADQERSTPIPG 180 Query: 181 GMNKSGTVSLNNTVKDGSQTPTVDSVTKDNTANGVNSSIPTVTGSSVPPASPTTVSAVES 240 GMNK GTV LNNT +DGSQTP +DS KDN NGVNS T TGSSVPPASP SAVE+ Sbjct: 181 GMNKPGTVPLNNTARDGSQTPVIDSAIKDNATNGVNSMTATATGSSVPPASPNPASAVEN 240 Query: 241 NGLSNGSTSAANGLDGNASTANLANGRPLVTKLEDAGPAEDPTKVGMVKYDGKEVTNEPE 300 N ++ GS+ A+ G +T + NG+ LVTKLEDAGPAEDPTKVGMVKYDGKEV NEPE Sbjct: 241 NAVAIGSSGAS----GTVAT-DPTNGKLLVTKLEDAGPAEDPTKVGMVKYDGKEVANEPE 295 Query: 301 FEEGTMDPLADVAPDGGGRAKRGNLRRKTRQLKVLDENAKKLRFEEFYPWVMEDFDGYNT 360 FEEGTMDPLADVAPDGGGRAKRGN+RRKTRQLKVLDENAKKLRFEEFYPWVMEDFDGYNT Sbjct: 296 FEEGTMDPLADVAPDGGGRAKRGNMRRKTRQLKVLDENAKKLRFEEFYPWVMEDFDGYNT 355 Query: 361 WVGSYEAGNSDSYVLLSVEDDGSFTMIPADKVYKFTARNKYATLTIDEAEKRMDKKSGEV 420 WVGSYEAGNSDSYVLLSVEDDGSFTMIPADKVYKFTARNKYATLTIDEAEKRMDKKSGEV Sbjct: 356 WVGSYEAGNSDSYVLLSVEDDGSFTMIPADKVYKFTARNKYATLTIDEAEKRMDKKSGEV 415 Query: 421 PRWLMKHLDNIGTTTTRYDRTRRKLKAVADQQAMDEDDRDDNSEVELDYDEEFADDEEAP 480 PRWLMKHLDNIGTTTTRYDRTRRKLKAVADQQAMDEDDRDDNSEVELDYDEEFADDEEAP Sbjct: 416 PRWLMKHLDNIGTTTTRYDRTRRKLKAVADQQAMDEDDRDDNSEVELDYDEEFADDEEAP 475 Query: 481 IIDGNEQENKESEQRIKKEMLQANAMGLRDEEAPSENEEDELFGEKKIDEDGERIKKALQ 540 IIDGNEQENKESEQRIKKEMLQANAMGLRDEEAPS NEEDELFGEKKIDEDGE+IKKALQ Sbjct: 476 IIDGNEQENKESEQRIKKEMLQANAMGLRDEEAPSGNEEDELFGEKKIDEDGEKIKKALQ 535 Query: 541 KTELAALYSSDENEINPYLSESDIENKENESPVKKEEDSDTLSKSKRSSPKKQQKKATNA 600 KTELAALYSSDE+EINPYLSESDIENKENE VKKEED D+LSKSK+SSPKKQQKK NA Sbjct: 536 KTELAALYSSDEDEINPYLSESDIENKENEPSVKKEEDIDSLSKSKKSSPKKQQKKTANA 595 Query: 601 HVHKEPTLRVKSIKNCVIILKGDKKILKSFPEGEWNPQTTKAVDSSNNASNTVPSPIKQE 660 HVHKEP LRVKSIK+CVIILKGDKK+LKSFPEGEWNP K D S N SN V +PIK+E Sbjct: 596 HVHKEPNLRVKSIKDCVIILKGDKKVLKSFPEGEWNPHAAKIKDISGNESNAVSAPIKKE 655 Query: 661 EGLNSTVAEREETPAPTITEKDIIEAIGDGKVNIKEFGKFIRRKYPGAENKKLMFAIVKK 720 + L S V + +ETPAP ITE+DII+AIGDGKVN+KEFGK IRR+YPGAENKKLMFAIVKK Sbjct: 656 KPLESIVVQEKETPAPLITEQDIIDAIGDGKVNVKEFGKSIRRRYPGAENKKLMFAIVKK 715 Query: 721 LCRKVGNDHMELKKE 735 LCRKV N+HMELKKE Sbjct: 716 LCRKVDNEHMELKKE 730 >5FMF-U nrPDB Length = 150 Score = 192 bits (488), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 107/156 (68%), Positives = 115/156 (73%), Gaps = 32/156 (20%) Query: 277 GPAEDPTKVGMVKYDGKE----VTNEP-----------EFEEGTMDPLADVAPDGGGRAK 321 P ED + ++K+ K+ VT+ P +F+ LADVA Sbjct: 12 APKEDLERTHLLKFQSKKKINPVTHLPVRLHRKDTRNLQFQ------LADVA-------- 57 Query: 322 RGNLRRKTRQLKVLDENAKKLRFEEFYPWVMEDFDGYNTWVGSYEAGNSDSYVLLSVEDD 381 GNLRRKTRQLKVL ENAKKLRFE FYPWVMEDFDGYNTWVGSYEAGNSDSYVLLSVEDD Sbjct: 58 -GNLRRKTRQLKVL-ENAKKLRFE-FYPWVMEDFDGYNTWVGSYEAGNSDSYVLLSVEDD 114 Query: 382 GSFTMIPADKVYKFTARNKYATLTIDEAEKRMDKKS 417 GSFTMIPADKVYKFTARNKYATLTIDEAEKRMDKKS Sbjct: 115 GSFTMIPADKVYKFTARNKYATLTIDEAEKRMDKKS 150 Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 53/58 (91%), Positives = 53/58 (91%), Gaps = 5/58 (8%) Query: 94 DPNEYNEFPLRAIPKEDLENMRTHLLKFQSKKKINPVTDFHLPVRLHRKDTRNLQFQL 151 DPNEYNEFPLRA PKEDLE RTHLLKFQSKKKINPVT HLPVRLHRKDTRNLQFQL Sbjct: 1 DPNEYNEFPLRA-PKEDLE--RTHLLKFQSKKKINPVT--HLPVRLHRKDTRNLQFQL 53 >3T0Q-A nrPDB Length = 349 Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 7/57 (12%) Query: 344 FEEFYPWVMEDFDGYNTWVGSY-EAGNSDSYVLLSVEDDGSFTMIPA--DKVYKFTA 397 FEE V DGYN + +Y + G+ +Y +L+ D MIP ++K+TA Sbjct: 71 FEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAGDG----MIPMTLSHIFKWTA 123 >3LLM-A nrPDB Length = 235 Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 12/77 (15%) Query: 629 SFPEGEWNPQTTKAVDS-----------SNNASNTVPSPIKQEEGLNSTVAEREETPAPT 677 S P+ WNP T+ +D S + N + ++Q+ L + + ERE P Sbjct: 5 SPPQSNWNPWTSSNIDEGPLAFATPEQISMDLKNELMYQLEQDHDLQAILQERELLPVKK 64 Query: 678 ITEKDIIEAIGDGKVNI 694 E +I+EAI V I Sbjct: 65 F-ESEILEAISQNSVVI 80 >2QZ4-A nrPDB Length = 262 Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust. Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 20/113 (17%) Query: 489 NKESEQRIKKEMLQANAMGLRDEEA--PSENEEDELFGEKK----------ID------- 529 N E EQ + + +++ + MG D S N D L G ID Sbjct: 123 NTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQER 182 Query: 530 -EDGERIKKALQKTELAALYSSDENEINPYLSESDIENKENESPVKKEEDSDT 581 E E+ K+L+ T+ + YS E+ P S +DI N NE+ + + T Sbjct: 183 REIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHT 235 >5IYD-S nrPDB Length = 517 Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust. Identities = 12/34 (35%), Positives = 17/34 (50%) Query: 372 SYVLLSVEDDGSFTMIPADKVYKFTARNKYATLT 405 SY + + DG+F P Y FT ++ TLT Sbjct: 123 SYYIFTQCPDGAFEAFPVHNWYNFTPLARHRTLT 156 >1F3U-B nrPDB Length = 171 Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust. Identities = 12/34 (35%), Positives = 17/34 (50%) Query: 372 SYVLLSVEDDGSFTMIPADKVYKFTARNKYATLT 405 SY + + DG+F P Y FT ++ TLT Sbjct: 122 SYYIFTQCPDGAFEAFPVHNWYNFTPLARHRTLT 155 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 6GYL-Q nrPDB 1300 0.0 4V1O-Q nrPDB 1245 0.0 5FMF-U nrPDB 207 1e-53 Sequences not found previously or not previously below threshold: 3VUE-A nrPDB 37 0.039 4A2F-A nrPDB 36 0.072 3T0Q-A nrPDB 32 0.80 2D6F-A nrPDB 32 1.3 2WN7-A nrPDB 31 1.6 6GMH-U nrPDB 30 3.4 5SVA-g nrPDB 30 4.3 1SQE-A nrPDB 29 7.2 CONVERGED! >6GYL-Q nrPDB Length = 735 Score = 1300 bits (3365), Expect = 0.0, Method: Composition-based stats. Identities = 735/735 (100%), Positives = 735/735 (100%) Query: 1 MSRRNPPGSRNGGGPTNASPFIKRDRMRRNFLRMRMGQNGSNSSSPGVPNGDNSRGSLVK 60 MSRRNPPGSRNGGGPTNASPFIKRDRMRRNFLRMRMGQNGSNSSSPGVPNGDNSRGSLVK Sbjct: 1 MSRRNPPGSRNGGGPTNASPFIKRDRMRRNFLRMRMGQNGSNSSSPGVPNGDNSRGSLVK 60 Query: 61 KDDPEYAEEREKMLLQIGVEADAGRSNVKVKDEDPNEYNEFPLRAIPKEDLENMRTHLLK 120 KDDPEYAEEREKMLLQIGVEADAGRSNVKVKDEDPNEYNEFPLRAIPKEDLENMRTHLLK Sbjct: 61 KDDPEYAEEREKMLLQIGVEADAGRSNVKVKDEDPNEYNEFPLRAIPKEDLENMRTHLLK 120 Query: 121 FQSKKKINPVTDFHLPVRLHRKDTRNLQFQLTRAEIVQRQKEISEYKKKAEQERSTPNSG 180 FQSKKKINPVTDFHLPVRLHRKDTRNLQFQLTRAEIVQRQKEISEYKKKAEQERSTPNSG Sbjct: 121 FQSKKKINPVTDFHLPVRLHRKDTRNLQFQLTRAEIVQRQKEISEYKKKAEQERSTPNSG 180 Query: 181 GMNKSGTVSLNNTVKDGSQTPTVDSVTKDNTANGVNSSIPTVTGSSVPPASPTTVSAVES 240 GMNKSGTVSLNNTVKDGSQTPTVDSVTKDNTANGVNSSIPTVTGSSVPPASPTTVSAVES Sbjct: 181 GMNKSGTVSLNNTVKDGSQTPTVDSVTKDNTANGVNSSIPTVTGSSVPPASPTTVSAVES 240 Query: 241 NGLSNGSTSAANGLDGNASTANLANGRPLVTKLEDAGPAEDPTKVGMVKYDGKEVTNEPE 300 NGLSNGSTSAANGLDGNASTANLANGRPLVTKLEDAGPAEDPTKVGMVKYDGKEVTNEPE Sbjct: 241 NGLSNGSTSAANGLDGNASTANLANGRPLVTKLEDAGPAEDPTKVGMVKYDGKEVTNEPE 300 Query: 301 FEEGTMDPLADVAPDGGGRAKRGNLRRKTRQLKVLDENAKKLRFEEFYPWVMEDFDGYNT 360 FEEGTMDPLADVAPDGGGRAKRGNLRRKTRQLKVLDENAKKLRFEEFYPWVMEDFDGYNT Sbjct: 301 FEEGTMDPLADVAPDGGGRAKRGNLRRKTRQLKVLDENAKKLRFEEFYPWVMEDFDGYNT 360 Query: 361 WVGSYEAGNSDSYVLLSVEDDGSFTMIPADKVYKFTARNKYATLTIDEAEKRMDKKSGEV 420 WVGSYEAGNSDSYVLLSVEDDGSFTMIPADKVYKFTARNKYATLTIDEAEKRMDKKSGEV Sbjct: 361 WVGSYEAGNSDSYVLLSVEDDGSFTMIPADKVYKFTARNKYATLTIDEAEKRMDKKSGEV 420 Query: 421 PRWLMKHLDNIGTTTTRYDRTRRKLKAVADQQAMDEDDRDDNSEVELDYDEEFADDEEAP 480 PRWLMKHLDNIGTTTTRYDRTRRKLKAVADQQAMDEDDRDDNSEVELDYDEEFADDEEAP Sbjct: 421 PRWLMKHLDNIGTTTTRYDRTRRKLKAVADQQAMDEDDRDDNSEVELDYDEEFADDEEAP 480 Query: 481 IIDGNEQENKESEQRIKKEMLQANAMGLRDEEAPSENEEDELFGEKKIDEDGERIKKALQ 540 IIDGNEQENKESEQRIKKEMLQANAMGLRDEEAPSENEEDELFGEKKIDEDGERIKKALQ Sbjct: 481 IIDGNEQENKESEQRIKKEMLQANAMGLRDEEAPSENEEDELFGEKKIDEDGERIKKALQ 540 Query: 541 KTELAALYSSDENEINPYLSESDIENKENESPVKKEEDSDTLSKSKRSSPKKQQKKATNA 600 KTELAALYSSDENEINPYLSESDIENKENESPVKKEEDSDTLSKSKRSSPKKQQKKATNA Sbjct: 541 KTELAALYSSDENEINPYLSESDIENKENESPVKKEEDSDTLSKSKRSSPKKQQKKATNA 600 Query: 601 HVHKEPTLRVKSIKNCVIILKGDKKILKSFPEGEWNPQTTKAVDSSNNASNTVPSPIKQE 660 HVHKEPTLRVKSIKNCVIILKGDKKILKSFPEGEWNPQTTKAVDSSNNASNTVPSPIKQE Sbjct: 601 HVHKEPTLRVKSIKNCVIILKGDKKILKSFPEGEWNPQTTKAVDSSNNASNTVPSPIKQE 660 Query: 661 EGLNSTVAEREETPAPTITEKDIIEAIGDGKVNIKEFGKFIRRKYPGAENKKLMFAIVKK 720 EGLNSTVAEREETPAPTITEKDIIEAIGDGKVNIKEFGKFIRRKYPGAENKKLMFAIVKK Sbjct: 661 EGLNSTVAEREETPAPTITEKDIIEAIGDGKVNIKEFGKFIRRKYPGAENKKLMFAIVKK 720 Query: 721 LCRKVGNDHMELKKE 735 LCRKVGNDHMELKKE Sbjct: 721 LCRKVGNDHMELKKE 735 >4V1O-Q nrPDB Length = 734 Score = 1245 bits (3222), Expect = 0.0, Method: Composition-based stats. Identities = 638/735 (86%), Positives = 670/735 (91%), Gaps = 5/735 (0%) Query: 1 MSRRNPPGSRNGGGPTNASPFIKRDRMRRNFLRMRMGQNGSNSSSPGVPNGDNSRGSLVK 60 MSRRNPPGSRNGGGPTNASPFIKRDRMRRNFLRMRMGQN SNSSS V N + SRGSLVK Sbjct: 1 MSRRNPPGSRNGGGPTNASPFIKRDRMRRNFLRMRMGQNSSNSSSSSVLNENGSRGSLVK 60 Query: 61 KDDPEYAEEREKMLLQIGVEADAGRSNVKVKDEDPNEYNEFPLRAIPKEDLENMRTHLLK 120 KDDPEYAEERE+MLLQIGVEADAGRSNVKVKDEDPNEYNEFPLRAIPKEDLENMRTHLLK Sbjct: 61 KDDPEYAEERERMLLQIGVEADAGRSNVKVKDEDPNEYNEFPLRAIPKEDLENMRTHLLK 120 Query: 121 FQSKKKINPVTDFHLPVRLHRKDTRNLQFQLTRAEIVQRQKEISEYKKKAEQERSTPNSG 180 FQSKKKINPVTDFHLPVRLHRKD+RN QFQLTRAEIVQ Q+EI EYKKKA+QERSTP G Sbjct: 121 FQSKKKINPVTDFHLPVRLHRKDSRNFQFQLTRAEIVQSQREICEYKKKADQERSTPIPG 180 Query: 181 GMNKSGTVSLNNTVKDGSQTPTVDSVTKDNTANGVNSSIPTVTGSSVPPASPTTVSAVES 240 GMNK GTV LNNT +DGSQTP +DS KDN NGVNS T TGSSVPPASP SAVE+ Sbjct: 181 GMNKPGTVPLNNTARDGSQTPVIDSAIKDNATNGVNSMTATATGSSVPPASPNPASAVEN 240 Query: 241 NGLSNGSTSAANGLDGNASTANLANGRPLVTKLEDAGPAEDPTKVGMVKYDGKEVTNEPE 300 N ++ GS+ A+ G +T + NG+ LVTKLEDAGPAEDPTKVGMVKYDGKEV NEPE Sbjct: 241 NAVAIGSSGAS----GTVAT-DPTNGKLLVTKLEDAGPAEDPTKVGMVKYDGKEVANEPE 295 Query: 301 FEEGTMDPLADVAPDGGGRAKRGNLRRKTRQLKVLDENAKKLRFEEFYPWVMEDFDGYNT 360 FEEGTMDPLADVAPDGGGRAKRGN+RRKTRQLKVLDENAKKLRFEEFYPWVMEDFDGYNT Sbjct: 296 FEEGTMDPLADVAPDGGGRAKRGNMRRKTRQLKVLDENAKKLRFEEFYPWVMEDFDGYNT 355 Query: 361 WVGSYEAGNSDSYVLLSVEDDGSFTMIPADKVYKFTARNKYATLTIDEAEKRMDKKSGEV 420 WVGSYEAGNSDSYVLLSVEDDGSFTMIPADKVYKFTARNKYATLTIDEAEKRMDKKSGEV Sbjct: 356 WVGSYEAGNSDSYVLLSVEDDGSFTMIPADKVYKFTARNKYATLTIDEAEKRMDKKSGEV 415 Query: 421 PRWLMKHLDNIGTTTTRYDRTRRKLKAVADQQAMDEDDRDDNSEVELDYDEEFADDEEAP 480 PRWLMKHLDNIGTTTTRYDRTRRKLKAVADQQAMDEDDRDDNSEVELDYDEEFADDEEAP Sbjct: 416 PRWLMKHLDNIGTTTTRYDRTRRKLKAVADQQAMDEDDRDDNSEVELDYDEEFADDEEAP 475 Query: 481 IIDGNEQENKESEQRIKKEMLQANAMGLRDEEAPSENEEDELFGEKKIDEDGERIKKALQ 540 IIDGNEQENKESEQRIKKEMLQANAMGLRDEEAPS NEEDELFGEKKIDEDGE+IKKALQ Sbjct: 476 IIDGNEQENKESEQRIKKEMLQANAMGLRDEEAPSGNEEDELFGEKKIDEDGEKIKKALQ 535 Query: 541 KTELAALYSSDENEINPYLSESDIENKENESPVKKEEDSDTLSKSKRSSPKKQQKKATNA 600 KTELAALYSSDE+EINPYLSESDIENKENE VKKEED D+LSKSK+SSPKKQQKK NA Sbjct: 536 KTELAALYSSDEDEINPYLSESDIENKENEPSVKKEEDIDSLSKSKKSSPKKQQKKTANA 595 Query: 601 HVHKEPTLRVKSIKNCVIILKGDKKILKSFPEGEWNPQTTKAVDSSNNASNTVPSPIKQE 660 HVHKEP LRVKSIK+CVIILKGDKK+LKSFPEGEWNP K D S N SN V +PIK+E Sbjct: 596 HVHKEPNLRVKSIKDCVIILKGDKKVLKSFPEGEWNPHAAKIKDISGNESNAVSAPIKKE 655 Query: 661 EGLNSTVAEREETPAPTITEKDIIEAIGDGKVNIKEFGKFIRRKYPGAENKKLMFAIVKK 720 + L S V + +ETPAP ITE+DII+AIGDGKVN+KEFGK IRR+YPGAENKKLMFAIVKK Sbjct: 656 KPLESIVVQEKETPAPLITEQDIIDAIGDGKVNVKEFGKSIRRRYPGAENKKLMFAIVKK 715 Query: 721 LCRKVGNDHMELKKE 735 LCRKV N+HMELKKE Sbjct: 716 LCRKVDNEHMELKKE 730 >5FMF-U nrPDB Length = 150 Score = 207 bits (527), Expect = 1e-53, Method: Composition-based stats. Identities = 106/150 (70%), Positives = 113/150 (75%), Gaps = 20/150 (13%) Query: 277 GPAEDPTKVGMVKYDGKE----VTNEP-----EFEEGTMDPLADVAPDGGGRAKRGNLRR 327 P ED + ++K+ K+ VT+ P + LADVA GNLRR Sbjct: 12 APKEDLERTHLLKFQSKKKINPVTHLPVRLHRKDTRNLQFQLADVA---------GNLRR 62 Query: 328 KTRQLKVLDENAKKLRFEEFYPWVMEDFDGYNTWVGSYEAGNSDSYVLLSVEDDGSFTMI 387 KTRQLKVL ENAKKLRFE FYPWVMEDFDGYNTWVGSYEAGNSDSYVLLSVEDDGSFTMI Sbjct: 63 KTRQLKVL-ENAKKLRFE-FYPWVMEDFDGYNTWVGSYEAGNSDSYVLLSVEDDGSFTMI 120 Query: 388 PADKVYKFTARNKYATLTIDEAEKRMDKKS 417 PADKVYKFTARNKYATLTIDEAEKRMDKKS Sbjct: 121 PADKVYKFTARNKYATLTIDEAEKRMDKKS 150 Score = 102 bits (253), Expect = 8e-22, Method: Composition-based stats. Identities = 53/58 (91%), Positives = 53/58 (91%), Gaps = 5/58 (8%) Query: 94 DPNEYNEFPLRAIPKEDLENMRTHLLKFQSKKKINPVTDFHLPVRLHRKDTRNLQFQL 151 DPNEYNEFPLRA PKEDLE RTHLLKFQSKKKINPVT HLPVRLHRKDTRNLQFQL Sbjct: 1 DPNEYNEFPLRA-PKEDLE--RTHLLKFQSKKKINPVT--HLPVRLHRKDTRNLQFQL 53 >3VUE-A nrPDB Length = 536 Score = 36.6 bits (83), Expect = 0.039, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 47/116 (40%), Gaps = 23/116 (19%) Query: 615 NCVIILKGDKKILKSFPEGEWNPQTTKAVDSSNNASNTVPS--------------PIKQE 660 + ++ L G I+ EW+P K + + +A+ + + P+ ++ Sbjct: 267 DNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAGLPVDRK 326 Query: 661 EGLNSTVAEREETPAPTIT--------EKDI-IEAIGDGKVNIKEFGKFIRRKYPG 707 L + + EE P + ++D+ I +G GK ++ K + KYPG Sbjct: 327 IPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKSMEEKYPG 382 >4A2F-A nrPDB Length = 497 Score = 35.8 bits (81), Expect = 0.072, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 9/125 (7%) Query: 170 AEQE------RSTPNSGGMNKSGTVSLNNTVKDGSQTPTVDSVTKDNTANGVNSSIPTVT 223 A+Q+ R+ PNSG N +G + DG+ P + ++ + N + S T Sbjct: 249 ADQDVDNYWIRALPNSGTQNFAGGTNSAILRYDGA-APVEPTTSQTPSTNPLVESALTTL 307 Query: 224 GSSVPPASPTTVSAVESNGLSNGSTSAANGLDGNASTANLANGRPLVTKLEDAGPAEDPT 283 + P SPT + ++ G ++G ++ L+ L A A D Sbjct: 308 KGTAAPGSPTPGGVDLALNMAFGFAGGNFTING--ASFTPPTVPVLLQILSGAQSAADLL 365 Query: 284 KVGMV 288 G V Sbjct: 366 PAGSV 370 >3T0Q-A nrPDB Length = 349 Score = 32.4 bits (72), Expect = 0.80, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 7/60 (11%) Query: 344 FEEFYPWVMEDFDGYNTWVGSY-EAGNSDSYVLLSVEDDGSFTMIPA--DKVYKFTARNK 400 FEE V DGYN + +Y + G+ +Y +L+ D MIP ++K+TA K Sbjct: 71 FEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAGDG----MIPMTLSHIFKWTANLK 126 >2D6F-A nrPDB Length = 435 Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 30/67 (44%) Query: 288 VKYDGKEVTNEPEFEEGTMDPLADVAPDGGGRAKRGNLRRKTRQLKVLDENAKKLRFEEF 347 VK + F PLA+V PDG + +R + +L++ D +++ F + Sbjct: 250 VKVRKMHTSRRDTFRSMNALPLAEVTPDGIKILEENYRKRGSDELELSDRVEERVAFIKS 309 Query: 348 YPWVMED 354 YP + D Sbjct: 310 YPGISPD 316 >2WN7-A nrPDB Length = 463 Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 10/89 (11%) Query: 512 EAPSENEEDELFGEKKIDE----DGERIKKALQKTELAAL--YSSDENEINPYLSES--- 562 +AP E ED L ++K E + ERI++ L+++E AL Y D EI+ Y Sbjct: 50 KAPIERPEDFLKDKEKAKEWERKEAERIEQKLERSEKEALESYKKDSVEISKYSQTRNYF 109 Query: 563 -DIENKENESPVKKEEDSDTLSKSKRSSP 590 D + + N + +E + +SK+K P Sbjct: 110 YDYQIEANSREKEYKELRNAISKNKIDKP 138 >6GMH-U nrPDB Length = 776 Score = 30.1 bits (66), Expect = 3.4, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 41/83 (49%), Gaps = 3/83 (3%) Query: 452 QAMDEDDR---DDNSEVELDYDEEFADDEEAPIIDGNEQENKESEQRIKKEMLQANAMGL 508 Q D+++R D+ +L +E+ D+E P+ N+ E + S+ + ++ M Sbjct: 296 QNTDDEERPQLSDDERQQLSEEEKANSDDERPVASDNDDEKQNSDDEEQPQLSDEEKMQN 355 Query: 509 RDEEAPSENEEDELFGEKKIDED 531 D+E P ++E+ + + ++D Sbjct: 356 SDDERPQASDEEHRHSDDEEEQD 378 >5SVA-g nrPDB Length = 400 Score = 29.7 bits (65), Expect = 4.3, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 70/142 (49%), Gaps = 18/142 (12%) Query: 470 DEEFADDEEAPIIDGNEQENKES---EQRIKKEMLQAN--------AMGLRDEEAPSENE 518 DE + +EE + DGN+ EN E+ E+ + ++ ++N M L ++ N Sbjct: 30 DEYLSQEEE--VFDGNDIENNETKVYEESLDLDLERSNRQVWLVRLPMFLAEKWRDRNNL 87 Query: 519 EDELFGEKKIDEDGERIKKALQKTELAALYSSDENEINPYLSESDI----ENKENESPVK 574 + G+ +I++DG +I L + + ++ + E+ + E++ +N + K Sbjct: 88 HGQELGKIRINKDGSKITLLLNENDNDSIPHEYDLELTKKVVENEYVFTEQNLKKYQQRK 147 Query: 575 KEEDSDTLSKSKRSSPKKQQKK 596 KE ++D K +++ KKQ+++ Sbjct: 148 KELEADP-EKQRQAYLKKQERE 168 >1SQE-A nrPDB Length = 109 Score = 28.9 bits (63), Expect = 7.2, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 24/45 (53%) Query: 351 VMEDFDGYNTWVGSYEAGNSDSYVLLSVEDDGSFTMIPADKVYKF 395 + E D +N W+ S + V L +DDG + I ++KV+K+ Sbjct: 57 IWESEDSFNNWLNSDVFKEAHKNVRLKSDDDGQQSPILSNKVFKY 101 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.303 0.130 0.367 Lambda K H 0.267 0.0391 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,872,169 Number of Sequences: 36641 Number of extensions: 1161971 Number of successful extensions: 3482 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 107 Number of HSP's that attempted gapping in prelim test: 3090 Number of HSP's gapped (non-prelim): 326 length of query: 735 length of database: 10,336,785 effective HSP length: 104 effective length of query: 631 effective length of database: 6,526,121 effective search space: 4117982351 effective search space used: 4117982351 T: 11 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.3 bits) S2: 63 (28.9 bits)