BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= P41814
         (478 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

5EQJ-A nrPDB                                                          986   0.0  
5CCB-B nrPDB                                                           81   1e-15
3IO3-A nrPDB                                                           35   0.059
5LR8-A nrPDB                                                           32   0.69 
1U83-A nrPDB                                                           30   2.8  
4RJ9-A nrPDB                                                           30   3.1  
6N0I-A nrPDB                                                           29   4.0  
2JJ9-A nrPDB                                                           28   8.2  
3MKD-A nrPDB                                                           28   8.7  

>5EQJ-A nrPDB
          Length = 488

 Score =  986 bits (2549), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/478 (100%), Positives = 478/478 (100%)

Query: 1   MNALTTIDFNQHVIVRLPSKNYKIVELKPNTSVSLGKFGAFEVNDIIGYPFGLTFEIYYD 60
           MNALTTIDFNQHVIVRLPSKNYKIVELKPNTSVSLGKFGAFEVNDIIGYPFGLTFEIYYD
Sbjct: 11  MNALTTIDFNQHVIVRLPSKNYKIVELKPNTSVSLGKFGAFEVNDIIGYPFGLTFEIYYD 70

Query: 61  GEEVSSDENRDSKPKNKIPIGKVRLLSQEIKDVNNDKDDGQSEPPLSIKEKSVSLELSSI 120
           GEEVSSDENRDSKPKNKIPIGKVRLLSQEIKDVNNDKDDGQSEPPLSIKEKSVSLELSSI
Sbjct: 71  GEEVSSDENRDSKPKNKIPIGKVRLLSQEIKDVNNDKDDGQSEPPLSIKEKSVSLELSSI 130

Query: 121 DSSATNQNLVNMGSKAQELTVEEIEKMKQESLSSKEIIDKIIKSHKSFHNKTVYSQEKYV 180
           DSSATNQNLVNMGSKAQELTVEEIEKMKQESLSSKEIIDKIIKSHKSFHNKTVYSQEKYV
Sbjct: 131 DSSATNQNLVNMGSKAQELTVEEIEKMKQESLSSKEIIDKIIKSHKSFHNKTVYSQEKYV 190

Query: 181 NRKKQKFAKYFTVEYLSSSNLLQFLIDKGDIQRVLDMSQESMGMLLNLANIQSEGNYLCM 240
           NRKKQKFAKYFTVEYLSSSNLLQFLIDKGDIQRVLDMSQESMGMLLNLANIQSEGNYLCM
Sbjct: 191 NRKKQKFAKYFTVEYLSSSNLLQFLIDKGDIQRVLDMSQESMGMLLNLANIQSEGNYLCM 250

Query: 241 DETGGLLVYFLLERMFGGDNESKSKGKVIVIHENEHANLDLLKFANYSEKFIKEHVHTIS 300
           DETGGLLVYFLLERMFGGDNESKSKGKVIVIHENEHANLDLLKFANYSEKFIKEHVHTIS
Sbjct: 251 DETGGLLVYFLLERMFGGDNESKSKGKVIVIHENEHANLDLLKFANYSEKFIKEHVHTIS 310

Query: 301 LLDFFEPPTLQEIQSRFTPLPKEEARALKGGKKNSYYRKLRWYNTQWQILELTGEFLYDG 360
           LLDFFEPPTLQEIQSRFTPLPKEEARALKGGKKNSYYRKLRWYNTQWQILELTGEFLYDG
Sbjct: 311 LLDFFEPPTLQEIQSRFTPLPKEEARALKGGKKNSYYRKLRWYNTQWQILELTGEFLYDG 370

Query: 361 LVMATTLHLPTLVPKLAEKIHGSRPIVCYGQFKETLLELAHTLYSDLRFLAPSILETRCR 420
           LVMATTLHLPTLVPKLAEKIHGSRPIVCYGQFKETLLELAHTLYSDLRFLAPSILETRCR
Sbjct: 371 LVMATTLHLPTLVPKLAEKIHGSRPIVCYGQFKETLLELAHTLYSDLRFLAPSILETRCR 430

Query: 421 PYQSIRGKLHPLMTMKGGGGYLMWCHRVIPAPEPVSENATAADSSEKLAEHGAKKQKI 478
           PYQSIRGKLHPLMTMKGGGGYLMWCHRVIPAPEPVSENATAADSSEKLAEHGAKKQKI
Sbjct: 431 PYQSIRGKLHPLMTMKGGGGYLMWCHRVIPAPEPVSENATAADSSEKLAEHGAKKQKI 488


>5CCB-B nrPDB
          Length = 497

 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 105/459 (22%), Positives = 193/459 (42%), Gaps = 91/459 (19%)

Query: 22  YKIVELKPNTSVSLGKFGAFEVNDIIGYPFGLTFEIYYDGEEVSSDENRDSKPKNKIPIG 81
           +K V+++    V+  K   F ++++IG+ +G  FE+   G           +PK K    
Sbjct: 34  FKAVQVQRRKKVTFEK-QWFYLDNVIGHSYGTAFEVTSGG---------SLQPKKK---- 79

Query: 82  KVRLLSQEIKDVNNDKDDGQSEPPLSIKEKSVSLELSSIDSSATNQNLVNMGSKAQELTV 141
                              + EP    KE           +   N+N+V+ G K+Q+LT 
Sbjct: 80  -------------------REEPTAETKE-----------AGTDNRNIVDDG-KSQKLTQ 108

Query: 142 EEIEKMKQESLSSKEIIDKIIKSHKSFHNKTVYSQEKYVNRKKQKFAKYFTVEYLSSSNL 201
           ++I+ +K + +  +EI+ ++I++  +F +KT ++Q+KY+ +KK+K+    TV    S+ +
Sbjct: 109 DDIKALKDKGIKGEEIVQQLIENSTTFRDKTEFAQDKYIKKKKKKYEAIITV-VKPSTRI 167

Query: 202 LQFLIDKGDIQRVLDMSQESMGMLLNLANIQSEGNYLCMDETGGLLVYFLLERMFG---- 257
           L  +    +  ++  M  +++  +L L NI++    + M+   GL++  ++ERM G    
Sbjct: 168 LSIMYYAREPGKINHMRYDTLAQMLTLGNIRAGNKMIVMETCAGLVLGAMMERMGGFGSI 227

Query: 258 -----GDNESKS--------KGKVIVIHENEHANLDLLKFANYSEKFI------------ 292
                G    ++        K  +  ++E     +D L    +S K +            
Sbjct: 228 IQLYPGGGPVRAATACFGFPKSFLSGLYEFPLNKVDSLLHGTFSAKMLSSEPKDSALVEE 287

Query: 293 ----------KEHVHTISLLDFFEP--PTLQEIQSRFTPLPKEEARALKGGKKNSYYRKL 340
                      E  +  S+ +  E   P  QE     +  P+ +    +G KK+    K 
Sbjct: 288 SNGTLEEKQASEQENEDSMAEAPESNHPEDQETMETISQDPEHKGPKERGSKKDYIQEKQ 347

Query: 341 RWYNTQ----WQILELTGEFLYDGLVMATTLHLPTLVPKLAEKIHGSRPIVCYGQFKETL 396
           R    Q     +   L  E   DGL++A+  H   L+  L + +  SRP V Y Q+KE L
Sbjct: 348 RRQEEQRKRHLEAAALLSERNADGLIVASRFHPTPLLLSLLDFVAPSRPFVVYCQYKEPL 407

Query: 397 LELAHTLYSDLRFLAPSILETRCRPYQSIRGKLHPLMTM 435
           LE    L      +   + ET  R YQ +  + HP + M
Sbjct: 408 LECYTKLRERGGVINLRLSETWLRNYQVLPDRSHPKLLM 446


>3IO3-A nrPDB
          Length = 348

 Score = 35.4 bits (80), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 2/49 (4%)

Query: 392 FKETLLELAHTLYSDLRFLA-PSILETRCRPYQSIRGKLHPLMTMKGGG 439
           +K  + + A T ++ LRFL  PS LE     ++ + GKL P+++M GGG
Sbjct: 156 YKTIIFDTAPTGHT-LRFLQLPSTLEKLLSKFKDLSGKLGPMLSMMGGG 203


>5LR8-A nrPDB
          Length = 938

 Score = 32.0 bits (71), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 9/103 (8%)

Query: 99  DGQSEPPLSIKEKSVSLELSSIDSSATNQNLVNMGSKAQELTVEEIEKMKQESLSSKEII 158
           D +   P S +E+ +S  L+SIDSSA   N+ +        + E    +K    ++K + 
Sbjct: 7   DREVRGPASTEEE-LSAVLTSIDSSAIASNIQHHADFTPLFSPEHSSPLKAYHATAKSVF 65

Query: 159 DKIIKSHKSFHNKTVYSQEKYVNRKKQKFAKYFTVEYLSSSNL 201
           D +I +  + ++        Y N+   K A Y ++E+L    L
Sbjct: 66  DSLIMNWNATYD--------YYNKVNAKQAYYLSMEFLQGRAL 100


>1U83-A nrPDB
          Length = 276

 Score = 29.6 bits (65), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 14/116 (12%)

Query: 151 SLSSKEIIDKI--IKSHK--SFHNKTVYSQEKYVNRKK----QKFAKYFTVEYLSSSNLL 202
           SL +K++ +KI  +K H    F   T++  EKYV++KK     ++  YF  EY+  SN  
Sbjct: 76  SLLTKDLEEKISTLKEHDITFFFGGTLF--EKYVSQKKVNEFHRYCTYFGCEYIEISNGT 133

Query: 203 QFLIDKGDIQRVLDMSQESMGMLLNLANIQSEGNYLCMDETGGLLVYFLLERMFGG 258
             + +K     + D S E     L L+ + S+   L   ++    + +++E M  G
Sbjct: 134 LPMTNKEKAAYIADFSDE----FLVLSEVGSKDAELASRQSSEEWLEYIVEDMEAG 185


>4RJ9-A nrPDB
          Length = 165

 Score = 29.6 bits (65), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 64/138 (46%), Gaps = 7/138 (5%)

Query: 46  IIGYPFGLTFEIYYDGEEVSSDENRDSKPKNKIPIGKVRLLSQEIKDVNNDKDDGQSEPP 105
           ++G+  GL       G  ++  + R S P   + +GK +L ++ IK   N   +   E  
Sbjct: 1   MLGHLVGLVKVRVVRGVNLAVRDLRSSDPYVIVRMGKQKLKTRVIKKTTNP--EWNDELT 58

Query: 106 LSIKEKSVSLELSSIDSSATNQNLVNMGSKAQELT-VEEIEKMKQESLSSKEIIDKIIKS 164
           LSI++ +V + L   D      +   MG+   ++  + E+ KMK E ++   ++ K++ +
Sbjct: 59  LSIEDPAVPVRLEVYDKDTFIDD--AMGNAELDIRPLVEVVKMKIEGVADNTVVKKVVPN 116

Query: 165 HKSF--HNKTVYSQEKYV 180
            ++      T+Y  E  V
Sbjct: 117 RQNCLAEESTIYISEGKV 134


>6N0I-A nrPDB
          Length = 706

 Score = 29.3 bits (64), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 7/84 (8%)

Query: 95  NDKDDGQS----EPPLSIKEKSVSLELSSIDSSA-TNQNLVNMGSKAQELTVEEIEKMKQ 149
           ND D G S    E P  +K  +       I+++A  N  L       +EL++EEI+   +
Sbjct: 198 NDADQGTSYREEEIPAELKALADEWRAHMIEAAAEANDELTMKFLDGEELSIEEIKAGLR 257

Query: 150 ESLSSKEIIDKIIKSHKSFHNKTV 173
           +   + EI+  I+ S  SF NK V
Sbjct: 258 QRTIANEIVPTILGS--SFKNKGV 279


>2JJ9-A nrPDB
          Length = 788

 Score = 28.1 bits (61), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 22/128 (17%)

Query: 238 LCMDETGGLLVYFLLERMFGGDNESKSKGKVIVIHENEHANLDLLKFANYSEKFIKEHVH 297
           LC++ T   L  F    MF  + E   K K+         N   + F   S+        
Sbjct: 480 LCINYTNEKLQQFFNHHMFKLEQEEYLKEKI---------NWTFIDFGLDSQA------- 523

Query: 298 TISLLDFFEPPTLQEIQSRFTPLPKEEARAL------KGGKKNSYYRKLRWYNTQWQILE 351
           TI L+D  +PP +  +    +  P      L         KKN+ Y + R+  T++ +  
Sbjct: 524 TIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTH 583

Query: 352 LTGEFLYD 359
             G+ +Y+
Sbjct: 584 YAGQVMYE 591


>3MKD-A nrPDB
          Length = 692

 Score = 28.1 bits (61), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 22/128 (17%)

Query: 238 LCMDETGGLLVYFLLERMFGGDNESKSKGKVIVIHENEHANLDLLKFANYSEKFIKEHVH 297
           LC++ T   L  F    MF  + E   K K+         N   + F   S+        
Sbjct: 468 LCINYTNEKLQQFFNHHMFKLEQEEYLKEKI---------NWTFIDFGLDSQA------- 511

Query: 298 TISLLDFFEPPTLQEIQSRFTPLPKEEARAL------KGGKKNSYYRKLRWYNTQWQILE 351
           TI L+D  +PP +  +    +  P      L         KKN+ Y + R+  T++ +  
Sbjct: 512 TIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTH 571

Query: 352 LTGEFLYD 359
             G+ +Y+
Sbjct: 572 YAGQVMYE 579


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

5EQJ-A nrPDB                                                          809   0.0  
5CCB-B nrPDB                                                          504   e-143

Sequences not found previously or not previously below threshold:

4UOP-A nrPDB                                                           37   0.020
2PUG-A nrPDB                                                           34   0.13 
3BHQ-A nrPDB                                                           33   0.27 
6N0I-A nrPDB                                                           33   0.35 
4CXU-A nrPDB                                                           32   0.43 
5ZCR-A nrPDB                                                           31   1.1  
2XVR-A nrPDB                                                           30   2.0  
1M2X-A nrPDB                                                           30   3.0  
1RH1-A nrPDB                                                           29   4.4  
6HIV-DJ nrPDB                                                          29   4.6  
5O9Z-R nrPDB                                                           29   6.6  
1HRD-A nrPDB                                                           29   7.0  


CONVERGED!
>5EQJ-A nrPDB
          Length = 488

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 478/478 (100%), Positives = 478/478 (100%)

Query: 1   MNALTTIDFNQHVIVRLPSKNYKIVELKPNTSVSLGKFGAFEVNDIIGYPFGLTFEIYYD 60
           MNALTTIDFNQHVIVRLPSKNYKIVELKPNTSVSLGKFGAFEVNDIIGYPFGLTFEIYYD
Sbjct: 11  MNALTTIDFNQHVIVRLPSKNYKIVELKPNTSVSLGKFGAFEVNDIIGYPFGLTFEIYYD 70

Query: 61  GEEVSSDENRDSKPKNKIPIGKVRLLSQEIKDVNNDKDDGQSEPPLSIKEKSVSLELSSI 120
           GEEVSSDENRDSKPKNKIPIGKVRLLSQEIKDVNNDKDDGQSEPPLSIKEKSVSLELSSI
Sbjct: 71  GEEVSSDENRDSKPKNKIPIGKVRLLSQEIKDVNNDKDDGQSEPPLSIKEKSVSLELSSI 130

Query: 121 DSSATNQNLVNMGSKAQELTVEEIEKMKQESLSSKEIIDKIIKSHKSFHNKTVYSQEKYV 180
           DSSATNQNLVNMGSKAQELTVEEIEKMKQESLSSKEIIDKIIKSHKSFHNKTVYSQEKYV
Sbjct: 131 DSSATNQNLVNMGSKAQELTVEEIEKMKQESLSSKEIIDKIIKSHKSFHNKTVYSQEKYV 190

Query: 181 NRKKQKFAKYFTVEYLSSSNLLQFLIDKGDIQRVLDMSQESMGMLLNLANIQSEGNYLCM 240
           NRKKQKFAKYFTVEYLSSSNLLQFLIDKGDIQRVLDMSQESMGMLLNLANIQSEGNYLCM
Sbjct: 191 NRKKQKFAKYFTVEYLSSSNLLQFLIDKGDIQRVLDMSQESMGMLLNLANIQSEGNYLCM 250

Query: 241 DETGGLLVYFLLERMFGGDNESKSKGKVIVIHENEHANLDLLKFANYSEKFIKEHVHTIS 300
           DETGGLLVYFLLERMFGGDNESKSKGKVIVIHENEHANLDLLKFANYSEKFIKEHVHTIS
Sbjct: 251 DETGGLLVYFLLERMFGGDNESKSKGKVIVIHENEHANLDLLKFANYSEKFIKEHVHTIS 310

Query: 301 LLDFFEPPTLQEIQSRFTPLPKEEARALKGGKKNSYYRKLRWYNTQWQILELTGEFLYDG 360
           LLDFFEPPTLQEIQSRFTPLPKEEARALKGGKKNSYYRKLRWYNTQWQILELTGEFLYDG
Sbjct: 311 LLDFFEPPTLQEIQSRFTPLPKEEARALKGGKKNSYYRKLRWYNTQWQILELTGEFLYDG 370

Query: 361 LVMATTLHLPTLVPKLAEKIHGSRPIVCYGQFKETLLELAHTLYSDLRFLAPSILETRCR 420
           LVMATTLHLPTLVPKLAEKIHGSRPIVCYGQFKETLLELAHTLYSDLRFLAPSILETRCR
Sbjct: 371 LVMATTLHLPTLVPKLAEKIHGSRPIVCYGQFKETLLELAHTLYSDLRFLAPSILETRCR 430

Query: 421 PYQSIRGKLHPLMTMKGGGGYLMWCHRVIPAPEPVSENATAADSSEKLAEHGAKKQKI 478
           PYQSIRGKLHPLMTMKGGGGYLMWCHRVIPAPEPVSENATAADSSEKLAEHGAKKQKI
Sbjct: 431 PYQSIRGKLHPLMTMKGGGGYLMWCHRVIPAPEPVSENATAADSSEKLAEHGAKKQKI 488


>5CCB-B nrPDB
          Length = 497

 Score =  504 bits (1297), Expect = e-143,   Method: Composition-based stats.
 Identities = 122/505 (24%), Positives = 216/505 (42%), Gaps = 96/505 (19%)

Query: 22  YKIVELKPNTSVSLGKFGAFEVNDIIGYPFGLTFEIYYDGEEVSSDENRDSKPKNKIPIG 81
           +K V+++    V+  K   F ++++IG+ +G  FE+   G           +PK K    
Sbjct: 34  FKAVQVQRRKKVTFEK-QWFYLDNVIGHSYGTAFEVTSGG---------SLQPKKK---- 79

Query: 82  KVRLLSQEIKDVNNDKDDGQSEPPLSIKEKSVSLELSSIDSSATNQNLVNMGSKAQELTV 141
                              + EP    KE           +   N+N+V+ G K+Q+LT 
Sbjct: 80  -------------------REEPTAETKE-----------AGTDNRNIVDDG-KSQKLTQ 108

Query: 142 EEIEKMKQESLSSKEIIDKIIKSHKSFHNKTVYSQEKYVNRKKQKFAKYFTVEYLSSSNL 201
           ++I+ +K + +  +EI+ ++I++  +F +KT ++Q+KY+ +KK+K+    TV    S+ +
Sbjct: 109 DDIKALKDKGIKGEEIVQQLIENSTTFRDKTEFAQDKYIKKKKKKYEAIITV-VKPSTRI 167

Query: 202 LQFLIDKGDIQRVLDMSQESMGMLLNLANIQSEGNYLCMDETGGLLVYFLLERMFG---- 257
           L  +    +  ++  M  +++  +L L NI++    + M+   GL++  ++ERM G    
Sbjct: 168 LSIMYYAREPGKINHMRYDTLAQMLTLGNIRAGNKMIVMETCAGLVLGAMMERMGGFGSI 227

Query: 258 -----GDNESKS--------KGKVIVIHENEHANLDLLKFANYSEKFIK----------- 293
                G    ++        K  +  ++E     +D L    +S K +            
Sbjct: 228 IQLYPGGGPVRAATACFGFPKSFLSGLYEFPLNKVDSLLHGTFSAKMLSSEPKDSALVEE 287

Query: 294 -----------EHVHTISLLDFFEP--PTLQEIQSRFTPLPKEEARALKGGKKNSYYRKL 340
                      E  +  S+ +  E   P  QE     +  P+ +    +G KK+    K 
Sbjct: 288 SNGTLEEKQASEQENEDSMAEAPESNHPEDQETMETISQDPEHKGPKERGSKKDYIQEKQ 347

Query: 341 RWYNTQ----WQILELTGEFLYDGLVMATTLHLPTLVPKLAEKIHGSRPIVCYGQFKETL 396
           R    Q     +   L  E   DGL++A+  H   L+  L + +  SRP V Y Q+KE L
Sbjct: 348 RRQEEQRKRHLEAAALLSERNADGLIVASRFHPTPLLLSLLDFVAPSRPFVVYCQYKEPL 407

Query: 397 LELAHTLYSDLRFLAPSILETRCRPYQSIRGKLHPLMTMKGGGGYLMWCHRV----IPAP 452
           LE    L      +   + ET  R YQ +  + HP + M GGGGYL+    V    + A 
Sbjct: 408 LECYTKLRERGGVINLRLSETWLRNYQVLPDRSHPKLLMSGGGGYLLSGFTVAMDNLKAD 467

Query: 453 EPVSENATAADSSEKLAEHGAKKQK 477
             +  NA+  +S E   E  AKK+K
Sbjct: 468 TSLKSNASTLESHET-EEPAAKKRK 491


>4UOP-A nrPDB
          Length = 442

 Score = 36.7 bits (83), Expect = 0.020,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 78/217 (35%), Gaps = 16/217 (7%)

Query: 31  TSVSLGKFGAFEVNDIIGYPFGLTFEIYYDGEEVSSDENRDSKPKNKIPIGKVRLLSQEI 90
            + +     A   N    YP  + F+ +YD +    ++     P +++   K   + +E 
Sbjct: 149 KTATFHTNDASFYNRDEFYP-AVGFDKFYDRKFFGDEDVIGFSPSDEVLYNKAFPILEE- 206

Query: 91  KDVNNDKDDGQ-----SEPPLSIKEKSVSLELSSIDSSATNQNLVNMGSKAQELTVEEIE 145
           +  NN K   Q     S  P  I +    ++L S        N       A +   E I+
Sbjct: 207 QYKNNQKFYAQLISVSSHMPFDIPKDKQEIDLPSDLKDTELGNYFEAVHYADKQLGEFIQ 266

Query: 146 KMKQESLSSKEIIDKIIKSHKSFHNKTVYSQEKYVNRKKQKFAKYFTVEYLSSSNLLQFL 205
           K+K   +    ++      H    ++    Q+KYVNR  Q        E      +  FL
Sbjct: 267 KLKDSGIWDDSVVVFYGDHHIIKTDQLPEEQKKYVNRSTQ-----LKAEPADDYRIPFFL 321

Query: 206 IDKG--DIQRVLDM--SQESMGMLLNLANIQSEGNYL 238
              G  +   + ++    + M  ++NL  I++    +
Sbjct: 322 HYPGMENPGEIKNVGGEIDIMPTVMNLLGIKTGDQIM 358


>2PUG-A nrPDB
          Length = 340

 Score = 34.0 bits (76), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 48/140 (34%), Gaps = 10/140 (7%)

Query: 301 LLDFFEPPTLQEIQSRFTPLPKEEARALKGGKKNSYYRKLRWYNTQWQILELTGEFLYDG 360
           L    E     EI         ++   L  G   +   K R Y      L +  +   DG
Sbjct: 64  LATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAY------LSMMAQKRVDG 117

Query: 361 LVMATTLHLPTLVPKLAEKIHGSRPIVCYGQFKETLLELAHTLYSDLRFLAPS-ILETRC 419
           L++  + +   L+  L E  H    ++ +G+ K    +       +  ++A   ++E   
Sbjct: 118 LLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGH 177

Query: 420 RPYQSIRGKLHPLMTMKGGG 439
           R    I G   PL    G G
Sbjct: 178 REIGVIPG---PLEQNTGAG 194


>3BHQ-A nrPDB
          Length = 211

 Score = 33.2 bits (74), Expect = 0.27,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 69/190 (36%), Gaps = 19/190 (10%)

Query: 97  KDDGQSEPPLSIKEKSVSLELSSIDSSATNQNLVNMGSKAQELTVEEIEKMKQES----- 151
           K DG++      +E   +   + I       ++  + +KA        +    +      
Sbjct: 3   KIDGETRSARKDREIIQAATAAFISKGYDGTSMEEIATKAGASKQTVYKHFTDKETLFGE 62

Query: 152 --LSSKEIIDKIIKSHKSFHNKTVYSQEKYVNRKKQKFAKYFTVEYLSSSNL-------- 201
             LS+   ++ II+S  +  ++ ++ +       ++  A     E L    L        
Sbjct: 63  VVLSTASQVNDIIESVTTLLSEAIFMEGGLQQLARRLIAVLMDEELLKLRRLIIANADRM 122

Query: 202 --LQFLIDKGDIQRVLDMSQESMGMLLNLANIQSEGNYLCMDETGGLLVYFLL-ERMFGG 258
             L     +   +R+L  +      L N   IQ+   YL      G+L++  + E MF G
Sbjct: 123 PQLGRAWYEKGFERMLASTASCFQKLTNRGLIQTGDPYLAASHLFGMLLWIPMNEAMFTG 182

Query: 259 DNESKSKGKV 268
            N  +SK ++
Sbjct: 183 SNR-RSKAEL 191


>6N0I-A nrPDB
          Length = 706

 Score = 32.8 bits (73), Expect = 0.35,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 5/96 (5%)

Query: 80  IGKVRLLSQEIKDVNNDKDDGQSEPPLSIKEKSVSLELSSIDSSAT-NQNLVNMGSKAQE 138
           I  V++ +    D +      + E P  +K  +       I+++A  N  L       +E
Sbjct: 187 IDLVKMKAIYWNDADQGTSYREEEIPAELKALADEWRAHMIEAAAEANDELTMKFLDGEE 246

Query: 139 LTVEEIEK-MKQESLSSKEIIDKIIKSHKSFHNKTV 173
           L++EEI+  ++Q ++++ EI+  I+ S  SF NK V
Sbjct: 247 LSIEEIKAGLRQRTIAN-EIVPTILGS--SFKNKGV 279


>4CXU-A nrPDB
          Length = 536

 Score = 32.4 bits (72), Expect = 0.43,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 58/177 (32%), Gaps = 24/177 (13%)

Query: 291 FIKEHVHTISLLDFFEP--PTLQEIQSRFTPLPKEEARALKGGKKNSYYRKLRWYNTQWQ 348
           F+ ++    +LL+ F    P L +   R       +      G+ NSY     WY  +W 
Sbjct: 314 FMSDNGAEGALLEAFPKFGPDLLDFLDR-----HYDNSLENIGRANSYV----WYGPRWA 364

Query: 349 ILELTGEFLYDGLVMATTLHLPTLV--PKLAEKIHGSRPIVCYGQFKETLLELAHTL--- 403
                   LY        + +P LV  P+L+ +   S           TLL+LA      
Sbjct: 365 QAATAPSRLYKAFTTQGGIRVPALVRYPRLSRQGAISHAFATVMDVTPTLLDLAGVRHPG 424

Query: 404 -YSDLRFLAPSILETRCRPYQSIRGKLHPLMTMKGGGGYLM-------WCHRVIPAP 452
                R +A     +            H   T+ G G + M       W    +PAP
Sbjct: 425 KRWRGREIAEPRGRSWLGWLSGETEAAHDENTVTGWGLFGMRAIRQGDWKAVYLPAP 481


>5ZCR-A nrPDB
          Length = 728

 Score = 31.3 bits (69), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 3/107 (2%)

Query: 106 LSIKEKSVSLELSSIDSSATNQNLVNMGSKAQELTVEE--IEKMKQESLSSKEIIDKIIK 163
           L +    +S  L +   S    ++V+     +EL  EE   + +K+      EII  I+ 
Sbjct: 29  LGVSHLYLSPILKARPGSTHGYDVVDHSEINEELGGEEGYFKLVKEAKSRGLEIIQDIVP 88

Query: 164 SHKSFHNKTVYSQEKYVNRKKQKFAKYFTVEYLSSSNLLQFLIDKGD 210
           +H + H+      +   + K  K+  YF   Y     +L  L D+ D
Sbjct: 89  NHMAVHHTNWRLMDLLKSWKNSKYYNYFD-HYDDDKIILPILEDELD 134


>2XVR-A nrPDB
          Length = 345

 Score = 30.1 bits (66), Expect = 2.0,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 88/255 (34%), Gaps = 28/255 (10%)

Query: 31  TSVSLGKFGAFEVNDIIGYPFGLTFEIYYDGEEVSSDENRDSKPKNKI----PIGKVRLL 86
            S+S GK   F V        G T   Y    E   D+ +D K   K+     +    +L
Sbjct: 53  RSISSGKSAQFPV-------LGRTQAAYLAPGENLDDKRKDIKHTEKVITIDGLLTADVL 105

Query: 87  SQEIKDVNNDKDDGQSEPPLSIKEKSVSLELSSIDS---------SATNQNLVNMGSKAQ 137
             +I+D  N  D  +SE    + E        ++ +         S  N+N+  +G+   
Sbjct: 106 IYDIEDAMNHYDV-RSEYTSQLGESLAMAADGAVLAEIAGLCNVESKYNENIEGLGTATV 164

Query: 138 ELTVEEIEKMKQESLSSKEIIDKIIKSHKSFHNKTVYSQEKYVNRKKQKFAKYFTVEYLS 197
             T +    +  +    KEII  + K+  +     V + ++        ++       + 
Sbjct: 165 IETTQNKAALTDQVALGKEIIAALTKARAALTKNYVPAADRVFYCDPDSYSAILAA-LMP 223

Query: 198 SSNLLQFLIDKGDIQRVLDMSQESMGMLLNLANIQSEGNYLCMDETGGLLVYFLLERMFG 257
           ++     LID         M  E    ++ + ++ + G     + T G    F   +  G
Sbjct: 224 NAANYAALIDPEKGSIRNVMGFE----VVEVPHLTAGGAGTAREGTTGQKHVFPANK--G 277

Query: 258 GDNESKSKGKVIVIH 272
             N   +K  VI + 
Sbjct: 278 EGNVKVAKDNVIGLF 292


>1M2X-A nrPDB
          Length = 223

 Score = 29.7 bits (65), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 7/70 (10%)

Query: 24  IVELKPNTSVSLGKFGAFEVNDIIGYPFGLTFEIYYDGEEVSSDENRDSKPKNKIPIGKV 83
             E KP    +     +F+V           F++YY G+  ++D      PK K+ +G  
Sbjct: 102 AKENKPRAQYTFDNNKSFKVGK-------SEFQVYYPGKGHTADNVVVWFPKEKVLVGGC 154

Query: 84  RLLSQEIKDV 93
            + S + KD+
Sbjct: 155 IIKSADSKDL 164


>1RH1-A nrPDB
          Length = 511

 Score = 29.0 bits (63), Expect = 4.4,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 18/100 (18%)

Query: 78  IPIGKVRLLSQEIKDVNNDKDDGQSEPPLSIKEKSVSLELSSIDSSATNQNLVNMGSKAQ 137
           + I     LSQ  +  NN KDD + +      EK+V  + S +        ++++G K  
Sbjct: 286 VEILDSNSLSQRQEAENNAKDDFRVKKEQENDEKTVLTKTSEV--------IISVGDKVG 337

Query: 138 ELTVEEIEKMKQESLSSKEIIDKIIKSHKSFHNKTVYSQE 177
           E   ++ + + +E          I ++  +F  KT+ S +
Sbjct: 338 EYLGDKYKALSRE----------IAENINNFQGKTIRSYD 367


>6HIV-DJ nrPDB
          Length = 396

 Score = 29.0 bits (63), Expect = 4.6,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 101 QSEPPLSIKEKSVSLELSSIDSSATNQNLVNMGSKAQELTVEEIEKMKQESLSSKEII-- 158
           +S    S ++       S++ SS+ N N     +K  ++  ++IEK K E L  ++ +  
Sbjct: 305 RSPRQFSPRQLYFDYTPSTLGSSSHNPN-----AKIDDIVKDKIEKWKAEGLLPEDYVHE 359

Query: 159 DKIIKSHKSFHNKTVYSQEKYVNRKK 184
           D++     +F N  V  QEK+    K
Sbjct: 360 DRVYDRSAAFKN--VARQEKWKKMPK 383


>5O9Z-R nrPDB
          Length = 557

 Score = 28.6 bits (62), Expect = 6.6,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 4/69 (5%)

Query: 284 FANYSEKFIKEHVHTISLLDFFEPPTLQEIQSRFTPLPKE----EARALKGGKKNSYYRK 339
            + +  K   E    + +     P +    +SR   +P+E    E  A +  KK SYY K
Sbjct: 24  HSFHQSKLTNEDFRKLLMTPRAAPTSAPPSKSRHHEMPREYNEDEDPAARRRKKKSYYAK 83

Query: 340 LRWYNTQWQ 348
           LR    + +
Sbjct: 84  LRQQEIERE 92


>1HRD-A nrPDB
          Length = 449

 Score = 28.6 bits (62), Expect = 7.0,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 33/69 (47%)

Query: 111 KSVSLELSSIDSSATNQNLVNMGSKAQELTVEEIEKMKQESLSSKEIIDKIIKSHKSFHN 170
           K+V+L      +    + L  +G+KA  L+  +      E ++++E I+ +++   S  N
Sbjct: 231 KTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRN 290

Query: 171 KTVYSQEKY 179
           K     +K+
Sbjct: 291 KVQDYADKF 299


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.309    0.125    0.318 

Lambda     K      H
   0.267   0.0374    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,921,622
Number of Sequences: 36641
Number of extensions: 611982
Number of successful extensions: 1945
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1917
Number of HSP's gapped (non-prelim): 54
length of query: 478
length of database: 10,336,785
effective HSP length: 101
effective length of query: 377
effective length of database: 6,636,044
effective search space: 2501788588
effective search space used: 2501788588
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 61 (28.2 bits)