BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= P41807
         (478 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

5VOY-P nrPDB                                                          968   0.0  
4KPA-A nrPDB                                                           33   0.38 
5ZBN-A nrPDB                                                           31   0.92 
3OSJ-A nrPDB                                                           31   0.92 
1AL8-A nrPDB                                                           31   0.97 
3TVI-A nrPDB                                                           30   1.6  
2CDH-0 nrPDB                                                           30   2.3  
4QXD-A nrPDB                                                           30   2.7  
5OQL-K nrPDB                                                           30   3.3  
1SXJ-C nrPDB                                                           28   8.4  

>5VOY-P nrPDB
          Length = 478

 Score =  968 bits (2503), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/478 (100%), Positives = 478/478 (100%)

Query: 1   MGATKILMDSTHFNEIRSIIRSRSVAWDALARSEELSEIDASTAKALESILVKKNIGDGL 60
           MGATKILMDSTHFNEIRSIIRSRSVAWDALARSEELSEIDASTAKALESILVKKNIGDGL
Sbjct: 1   MGATKILMDSTHFNEIRSIIRSRSVAWDALARSEELSEIDASTAKALESILVKKNIGDGL 60

Query: 61  SSSNNAHSGFKVNGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQED 120
           SSSNNAHSGFKVNGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQED
Sbjct: 61  SSSNNAHSGFKVNGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQED 120

Query: 121 PKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQM 180
           PKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQM
Sbjct: 121 PKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQM 180

Query: 181 DTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGI 240
           DTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGI
Sbjct: 181 DTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGI 240

Query: 241 QLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCST 300
           QLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCST
Sbjct: 241 QLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCST 300

Query: 301 RVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYV 360
           RVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYV
Sbjct: 301 RVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYV 360

Query: 361 AELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIII 420
           AELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIII
Sbjct: 361 AELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIII 420

Query: 421 QVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYTFK 478
           QVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYTFK
Sbjct: 421 QVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYTFK 478


>4KPA-A nrPDB
          Length = 494

 Score = 32.7 bits (73), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 5/98 (5%)

Query: 358 EYVAELDSKLLCWSPP-HVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQE 416
           EY  E   +L+   P  H D   W D+++EF+ + ++    + +       NG    ++ 
Sbjct: 368 EYPLEKGDELMVLIPQLHRDKTIWGDDVEEFRPERFENPSAIPQHAFKPFGNG----QRA 423

Query: 417 KIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELL 454
            I  Q AL++ T V+ ++ +  D  D T  + DI E L
Sbjct: 424 CIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKETL 461


>5ZBN-A nrPDB
          Length = 371

 Score = 31.2 bits (69), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 24/121 (19%)

Query: 142 SGFNVVSLLVQNGLHNVKLVEKLLKNNNLIN---ILQNIEQMD------------TCYVC 186
           +GF  ++L V      +   E  +KN  ++     L+N E +D              YV 
Sbjct: 148 AGFKAIALTVDT--PRLGRREADIKNRFVLPPFLTLKNFEGLDLGKMDQASDSGLASYVA 205

Query: 187 IRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATN---SNHLGIQLQ 243
            ++ + L+    ++DV WL     +P L K +  A D++LA +  A     SNH   QL 
Sbjct: 206 GQIDRTLS----WKDVQWLQTITSLPILVKGVLTAEDARLAVQAGAAGIIVSNHGARQLD 261

Query: 244 Y 244
           Y
Sbjct: 262 Y 262


>3OSJ-A nrPDB
          Length = 147

 Score = 31.2 bits (69), Expect = 0.92,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 21/29 (72%)

Query: 387 FKKDNYKIFRQLIELLQAKVRNGDVNAKQ 415
           F++D  K + Q I  L+++VRNGD++ K+
Sbjct: 37  FERDITKAYSQSISYLESQVRNGDISMKE 65


>1AL8-A nrPDB
          Length = 359

 Score = 31.2 bits (69), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 24/121 (19%)

Query: 142 SGFNVVSLLVQNGLHNVKLVEKLLKNNNLIN---ILQNIEQMD------------TCYVC 186
           +GF  ++L V      +   E  +KN  ++     L+N E +D            + YV 
Sbjct: 147 AGFKAIALTVDT--PRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVA 204

Query: 187 IRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATN---SNHLGIQLQ 243
            ++ + L+    ++DV WL     +P L K +  A D++LA +  A     SNH   QL 
Sbjct: 205 GQIDRSLS----WKDVAWLQTITSLPILVKGVITAEDARLAVQHGAAGIIVSNHGARQLD 260

Query: 244 Y 244
           Y
Sbjct: 261 Y 261


>3TVI-A nrPDB
          Length = 446

 Score = 30.4 bits (67), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 70/182 (38%), Gaps = 39/182 (21%)

Query: 39  IDASTAKALESILVKKNIGDGLSSSNNAHSGFKVNGKTLIPLIH----------LLSTSD 88
           ID   A  LE   VKKNI +G SS   A  G  +NG  L   ++              S 
Sbjct: 88  IDMDIAYYLEK--VKKNIENGASSDYAASRGEYLNGVILAKYLNAEFIDAAEVIFFDKSG 145

Query: 89  NEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVS 148
             D KKS + +  ++LS +K               +   +  S  GD +T    G +V  
Sbjct: 146 CFDEKKSYEKIKEKVLSCNK-------------AVIPGFYGSSFNGDVKTFSRGGSDVTG 192

Query: 149 LLVQNGLHNVKLVE-------------KLLKNNNLINILQNIEQMDTCYVCIRLLQELAV 195
            ++  G+ N  L E             ++++N   I+ +   E  +  Y+   +L E A+
Sbjct: 193 SIISAGV-NADLYENWTDVSGFLMADPRIVENPKTISKISYKELRELSYMGATVLHEEAI 251

Query: 196 IP 197
            P
Sbjct: 252 FP 253


>2CDH-0 nrPDB
          Length = 226

 Score = 30.0 bits (66), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 199 YRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATN---SNHLGIQLQY 244
           ++DV WL     +P L K +  A D++LA +  A     SNH   QL Y
Sbjct: 97  WKDVAWLQTITSLPILVKGVITAEDARLAVQHGAAGIIVSNHGARQLDY 145


>4QXD-A nrPDB
          Length = 293

 Score = 29.6 bits (65), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 425 NDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEAL 466
           NDI H+++  P+  +V  K G  A +M ++ H ++ + Y  L
Sbjct: 176 NDIQHLIKSFPDPYEVKYKGGSGAKMMAII-HQEADIYYHPL 216


>5OQL-K nrPDB
          Length = 938

 Score = 29.6 bits (65), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 344 EILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDE 386
           E ++ E +E    DE  A   S    WS P V+ G WS   DE
Sbjct: 662 ETVKQEAREKAEKDEASA--PSTAGAWSQPKVEAGAWSKPDDE 702


>1SXJ-C nrPDB
          Length = 340

 Score = 28.1 bits (61), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 6/74 (8%)

Query: 94  KSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 153
           K+  N++ EL +SD  G D V+   +D     Q+F    KG F+ +++   + ++   QN
Sbjct: 73  KNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFS---KG-FKLIILDEADAMTNAAQN 128

Query: 154 GLHNVKLVEKLLKN 167
            L  V  +E+  KN
Sbjct: 129 ALRRV--IERYTKN 140


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

5VOY-P nrPDB                                                          967   0.0  

Sequences not found previously or not previously below threshold:

4KPA-A nrPDB                                                           33   0.35 
3TVI-A nrPDB                                                           32   0.50 
5JR6-A nrPDB                                                           32   0.86 
5WLC-SM nrPDB                                                          32   0.86 
3OSJ-A nrPDB                                                           31   0.92 
3J8C-K nrPDB                                                           30   1.8  
5ZBN-A nrPDB                                                           30   2.1  
5YZA-A nrPDB                                                           30   2.3  
5XWF-A nrPDB                                                           30   2.5  
2CDH-0 nrPDB                                                           30   2.9  
1AL8-A nrPDB                                                           30   2.9  
1SXJ-C nrPDB                                                           30   3.0  
6HR7-A nrPDB                                                           30   3.0  
2G30-A nrPDB                                                           30   3.1  
6FEC-6 nrPDB                                                           30   3.2  
5FJW-A nrPDB                                                           28   6.1  
4QXD-A nrPDB                                                           28   6.3  
5UYR-A nrPDB                                                           28   7.9  


CONVERGED!
>5VOY-P nrPDB
          Length = 478

 Score =  967 bits (2501), Expect = 0.0,   Method: Composition-based stats.
 Identities = 478/478 (100%), Positives = 478/478 (100%)

Query: 1   MGATKILMDSTHFNEIRSIIRSRSVAWDALARSEELSEIDASTAKALESILVKKNIGDGL 60
           MGATKILMDSTHFNEIRSIIRSRSVAWDALARSEELSEIDASTAKALESILVKKNIGDGL
Sbjct: 1   MGATKILMDSTHFNEIRSIIRSRSVAWDALARSEELSEIDASTAKALESILVKKNIGDGL 60

Query: 61  SSSNNAHSGFKVNGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQED 120
           SSSNNAHSGFKVNGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQED
Sbjct: 61  SSSNNAHSGFKVNGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQED 120

Query: 121 PKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQM 180
           PKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQM
Sbjct: 121 PKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQM 180

Query: 181 DTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGI 240
           DTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGI
Sbjct: 181 DTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGI 240

Query: 241 QLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCST 300
           QLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCST
Sbjct: 241 QLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCST 300

Query: 301 RVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYV 360
           RVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYV
Sbjct: 301 RVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYV 360

Query: 361 AELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIII 420
           AELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIII
Sbjct: 361 AELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIII 420

Query: 421 QVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYTFK 478
           QVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYTFK
Sbjct: 421 QVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYTFK 478


>4KPA-A nrPDB
          Length = 494

 Score = 32.7 bits (73), Expect = 0.35,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 5/98 (5%)

Query: 358 EYVAELDSKLLCWSPP-HVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQE 416
           EY  E   +L+   P  H D   W D+++EF+ + ++    + +       NG    ++ 
Sbjct: 368 EYPLEKGDELMVLIPQLHRDKTIWGDDVEEFRPERFENPSAIPQHAFKPFGNG----QRA 423

Query: 417 KIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELL 454
            I  Q AL++ T V+ ++ +  D  D T  + DI E L
Sbjct: 424 CIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKETL 461


>3TVI-A nrPDB
          Length = 446

 Score = 32.3 bits (72), Expect = 0.50,   Method: Composition-based stats.
 Identities = 47/190 (24%), Positives = 75/190 (39%), Gaps = 41/190 (21%)

Query: 33  SEELSE--IDASTAKALESILVKKNIGDGLSSSNNAHSGFKVNGKTLIPLIH-------- 82
           +E +SE  ID   A  LE   VKKNI +G SS   A  G  +NG  L   ++        
Sbjct: 80  TEIVSELNIDMDIAYYLEK--VKKNIENGASSDYAASRGEYLNGVILAKYLNAEFIDAAE 137

Query: 83  --LLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVL 140
                 S   D KKS + +  ++LS +K               +   +  S  GD +T  
Sbjct: 138 VIFFDKSGCFDEKKSYEKIKEKVLSCNK-------------AVIPGFYGSSFNGDVKTFS 184

Query: 141 ISGFNVVSLLVQNGLHNVKLVE-------------KLLKNNNLINILQNIEQMDTCYVCI 187
             G +V   ++  G+ N  L E             ++++N   I+ +   E  +  Y+  
Sbjct: 185 RGGSDVTGSIISAGV-NADLYENWTDVSGFLMADPRIVENPKTISKISYKELRELSYMGA 243

Query: 188 RLLQELAVIP 197
            +L E A+ P
Sbjct: 244 TVLHEEAIFP 253


>5JR6-A nrPDB
          Length = 664

 Score = 31.6 bits (70), Expect = 0.86,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 81/189 (42%), Gaps = 29/189 (15%)

Query: 125 EQLFDVSLKGDFQTVLISGFNVVSLLVQ-------NGLHNVKLVEKLLKNNNLINI-LQN 176
           +++F+     +F T+   G N   +  +       N     K+VEK++ NNN  ++  ++
Sbjct: 104 DEIFETISSLEFNTIAFDGKNTSVVFYEKLRKALLNAYPKKKIVEKIIYNNNFDDVNKKD 163

Query: 177 IEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFM-----PTLFKILQ------RATDSQ 225
            E +    V  + L E+   P     +++H++K+        + K+ Q      +  D+ 
Sbjct: 164 DENVLNFLVLEKSLVEIKDYPVNNKTLYIHDRKYNGACAGEKIDKLKQSLMYDIKNVDNL 223

Query: 226 LATRI--VATNSNHLGIQLQYHSLLLIWLL--------TFNPVFANELVQKYLSDFLDLL 275
           L + +  +A   N  G   QY  L   +LL         F+ +     V+   +D  +LL
Sbjct: 224 LLSELDEIAYLLNLRGYDYQYSPLFYSYLLFQFDREEQDFSKIVFFTTVKNLPADVKNLL 283

Query: 276 KLVKITIKE 284
           ++ K+ +KE
Sbjct: 284 EINKVIVKE 292


>5WLC-SM nrPDB
          Length = 290

 Score = 31.6 bits (70), Expect = 0.86,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 5/62 (8%)

Query: 300 TRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEY 359
           ++++Q +++IKQ L  G  LP  + L+E +   ++ R D S LKE    E  +L   DEY
Sbjct: 23  SQLQQKRQIIKQALAQGKPLP--KELAEDESLQKDFRYDQS-LKE--SEEADDLQVDDEY 77

Query: 360 VA 361
            A
Sbjct: 78  AA 79


>3OSJ-A nrPDB
          Length = 147

 Score = 31.2 bits (69), Expect = 0.92,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 21/29 (72%)

Query: 387 FKKDNYKIFRQLIELLQAKVRNGDVNAKQ 415
           F++D  K + Q I  L+++VRNGD++ K+
Sbjct: 37  FERDITKAYSQSISYLESQVRNGDISMKE 65


>3J8C-K nrPDB
          Length = 208

 Score = 30.4 bits (67), Expect = 1.8,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 76/184 (41%), Gaps = 26/184 (14%)

Query: 214 LFKILQRATDSQLAT--RIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDF 271
           L K + R     LAT  R V T +      L+  +L ++ L  FNP F    V   +   
Sbjct: 14  LLKGIDRYNPENLATLERYVETQAKENAYDLE-ANLAVLKLYQFNPAFFQTTVTAQI--- 69

Query: 272 LDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYS 331
             LLK +   +      LC     +C   +  Q ++ I+Q+L LG+ L T    +  +  
Sbjct: 70  --LLKALT-NLPHTDFTLC-----KCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQAL 121

Query: 332 DEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDN 391
           DE +        ++LE     +T F++ V +    ++  +  H+D    ++ + +     
Sbjct: 122 DENM--------DLLEG----ITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQ 169

Query: 392 YKIF 395
            K++
Sbjct: 170 LKVW 173


>5ZBN-A nrPDB
          Length = 371

 Score = 30.0 bits (66), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 199 YRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATN---SNHLGIQLQY 244
           ++DV WL     +P L K +  A D++LA +  A     SNH   QL Y
Sbjct: 214 WKDVQWLQTITSLPILVKGVLTAEDARLAVQAGAAGIIVSNHGARQLDY 262


>5YZA-A nrPDB
          Length = 525

 Score = 30.0 bits (66), Expect = 2.3,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 38/160 (23%)

Query: 353 LTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDE----FKKDN-------YKIFR----- 396
           L +FD++    DSK  C    HVD   W   I E      KD+       Y  F+     
Sbjct: 117 LAAFDQWREWADSKSCCDYSLHVDISEWHKGIQEEMEALVKDHGVNSFLVYMAFKDRFQL 176

Query: 397 ---QLIELL----------QAKVRNGDVNAKQEKIIIQVALNDIT-HVV--------ELL 434
              Q+ E+L          Q    NGD+ A++++ I+ + +     HV+        E +
Sbjct: 177 TDCQIYEVLSVIRDIGAIAQVHAENGDIIAEEQQRILDLGITGPEGHVLSRPEEVEAEAV 236

Query: 435 PESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 474
             +I + ++T     I ++++ S + V  +A K    + G
Sbjct: 237 NRAITIANQTNCPLYITKVMSKSSAEVIAQARKKGTVVYG 276


>5XWF-A nrPDB
          Length = 378

 Score = 30.0 bits (66), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 10/62 (16%)

Query: 354 TSFDEYVA---------ELDSKLLCWSPPHVDNGFWSDNIDEFKKDNY-KIFRQLIELLQ 403
           +SFD +V+         +LD   L W  P+  NG   ++ DE    NY K+F+ L E L 
Sbjct: 81  SSFDNFVSNLVDVVKEYDLDGLNLDWEYPNSPNGVACNSKDENDTANYLKLFKALREKLG 140

Query: 404 AK 405
           +K
Sbjct: 141 SK 142


>2CDH-0 nrPDB
          Length = 226

 Score = 29.6 bits (65), Expect = 2.9,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 199 YRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATN---SNHLGIQLQY 244
           ++DV WL     +P L K +  A D++LA +  A     SNH   QL Y
Sbjct: 97  WKDVAWLQTITSLPILVKGVITAEDARLAVQHGAAGIIVSNHGARQLDY 145


>1AL8-A nrPDB
          Length = 359

 Score = 29.6 bits (65), Expect = 2.9,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 199 YRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATN---SNHLGIQLQY 244
           ++DV WL     +P L K +  A D++LA +  A     SNH   QL Y
Sbjct: 213 WKDVAWLQTITSLPILVKGVITAEDARLAVQHGAAGIIVSNHGARQLDY 261


>1SXJ-C nrPDB
          Length = 340

 Score = 29.6 bits (65), Expect = 3.0,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 6/74 (8%)

Query: 94  KSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 153
           K+  N++ EL +SD  G D V+   +D     Q+F    KG F+ +++   + ++   QN
Sbjct: 73  KNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFS---KG-FKLIILDEADAMTNAAQN 128

Query: 154 GLHNVKLVEKLLKN 167
            L  V  +E+  KN
Sbjct: 129 ALRRV--IERYTKN 140


>6HR7-A nrPDB
          Length = 427

 Score = 29.6 bits (65), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 21  RSRSVAWDALARSEELSEIDASTAKALESILVKKN-IGDGLSSSN--NAH 67
           R +S+  +   + EE+ +   +T+KA+E + + KN IG  +S+S   NAH
Sbjct: 268 RGKSIIAEVFLKEEEIKKYLKTTSKAIEQVNMYKNLIGSAISNSMGFNAH 317


>2G30-A nrPDB
          Length = 258

 Score = 29.6 bits (65), Expect = 3.1,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 7/86 (8%)

Query: 116 FFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQ 175
            F ED K   Q+F  + K       I   N +   ++    N   V   L+NNN+  I +
Sbjct: 146 LFVEDGKMERQVFLATWKD------IPNENELQFQIKECHLNADTVSSKLQNNNVYTIAK 199

Query: 176 -NIEQMDTCYVCIRLLQELAVIPEYR 200
            N+E  D  Y  ++L   + ++ E R
Sbjct: 200 RNVEGQDMLYQSLKLTNGIWILAELR 225


>6FEC-6 nrPDB
          Length = 218

 Score = 29.6 bits (65), Expect = 3.2,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 76/184 (41%), Gaps = 26/184 (14%)

Query: 214 LFKILQRATDSQLAT--RIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDF 271
           L K + R     LAT  R V T +      L+  +L ++ L  FNP F    V   +   
Sbjct: 14  LLKGIDRYNPENLATLERYVETQAKENAYDLE-ANLAVLKLYQFNPAFFQTTVTAQI--- 69

Query: 272 LDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYS 331
             LLK +   +      LC     +C   +  Q ++ I+Q+L LG+ L T    +  +  
Sbjct: 70  --LLKALT-NLPHTDFTLC-----KCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQAL 121

Query: 332 DEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDN 391
           DE +        ++LE     +T F++ V +    ++  +  H+D    ++ + +     
Sbjct: 122 DENM--------DLLEG----ITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLTDSQ 169

Query: 392 YKIF 395
            K++
Sbjct: 170 LKMW 173


>5FJW-A nrPDB
          Length = 270

 Score = 28.5 bits (62), Expect = 6.1,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 36/58 (62%), Gaps = 3/58 (5%)

Query: 390 DNYKIFRQLIELLQAKV-RNGDVNAKQEKIIIQVALND--ITHVVELLPESIDVLDKT 444
           +N  I   + E++ A+  R+G +++ + K ++++ +ND  ++H    L +SIDV DK+
Sbjct: 11  ENNGILISIKEVINAEFSRDGTIHSSELKGVLELRINDHDLSHSNLKLADSIDVRDKS 68


>4QXD-A nrPDB
          Length = 293

 Score = 28.5 bits (62), Expect = 6.3,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 425 NDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEAL 466
           NDI H+++  P+  +V  K G  A +M ++ H ++ + Y  L
Sbjct: 176 NDIQHLIKSFPDPYEVKYKGGSGAKMMAII-HQEADIYYHPL 216


>5UYR-A nrPDB
          Length = 640

 Score = 28.1 bits (61), Expect = 7.9,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 57/142 (40%), Gaps = 16/142 (11%)

Query: 339 ISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQL 398
           ++ L++I  +      SFD +   +  +   WSP H+++      + E  +   K F+Q 
Sbjct: 464 LAKLEDIPNSRLSPRKSFDLWQQTVRGRARRWSPLHLESARSLRVLIELMER--KRFQQD 521

Query: 399 IELLQAK----------VRNGDVNAKQEKIIIQVALNDI--THVVELLPESIDVLDKTGG 446
             LL+A           +  G  NA    + +  A  D+  + V EL+   +  L  +  
Sbjct: 522 FTLLEASLSRLRDGVAIIERGTANAAHRLLFVNTAFADVCGSDVAELIGRELQTLYASDA 581

Query: 447 KADIMELLNHS--DSRVKYEAL 466
               +ELL  +  + R  Y  L
Sbjct: 582 PRANVELLQDALRNGRAAYVTL 603


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.319    0.135    0.378 

Lambda     K      H
   0.267   0.0448    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,755,554
Number of Sequences: 36641
Number of extensions: 870670
Number of successful extensions: 2632
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 2624
Number of HSP's gapped (non-prelim): 49
length of query: 478
length of database: 10,336,785
effective HSP length: 101
effective length of query: 377
effective length of database: 6,636,044
effective search space: 2501788588
effective search space used: 2501788588
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.0 bits)