BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= P41807
(478 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
5VOY-P nrPDB 968 0.0
4KPA-A nrPDB 33 0.38
5ZBN-A nrPDB 31 0.92
3OSJ-A nrPDB 31 0.92
1AL8-A nrPDB 31 0.97
3TVI-A nrPDB 30 1.6
2CDH-0 nrPDB 30 2.3
4QXD-A nrPDB 30 2.7
5OQL-K nrPDB 30 3.3
1SXJ-C nrPDB 28 8.4
>5VOY-P nrPDB
Length = 478
Score = 968 bits (2503), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/478 (100%), Positives = 478/478 (100%)
Query: 1 MGATKILMDSTHFNEIRSIIRSRSVAWDALARSEELSEIDASTAKALESILVKKNIGDGL 60
MGATKILMDSTHFNEIRSIIRSRSVAWDALARSEELSEIDASTAKALESILVKKNIGDGL
Sbjct: 1 MGATKILMDSTHFNEIRSIIRSRSVAWDALARSEELSEIDASTAKALESILVKKNIGDGL 60
Query: 61 SSSNNAHSGFKVNGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQED 120
SSSNNAHSGFKVNGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQED
Sbjct: 61 SSSNNAHSGFKVNGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQED 120
Query: 121 PKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQM 180
PKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQM
Sbjct: 121 PKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQM 180
Query: 181 DTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGI 240
DTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGI
Sbjct: 181 DTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGI 240
Query: 241 QLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCST 300
QLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCST
Sbjct: 241 QLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCST 300
Query: 301 RVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYV 360
RVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYV
Sbjct: 301 RVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYV 360
Query: 361 AELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIII 420
AELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIII
Sbjct: 361 AELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIII 420
Query: 421 QVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYTFK 478
QVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYTFK
Sbjct: 421 QVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYTFK 478
>4KPA-A nrPDB
Length = 494
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 358 EYVAELDSKLLCWSPP-HVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQE 416
EY E +L+ P H D W D+++EF+ + ++ + + NG ++
Sbjct: 368 EYPLEKGDELMVLIPQLHRDKTIWGDDVEEFRPERFENPSAIPQHAFKPFGNG----QRA 423
Query: 417 KIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELL 454
I Q AL++ T V+ ++ + D D T + DI E L
Sbjct: 424 CIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKETL 461
>5ZBN-A nrPDB
Length = 371
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 24/121 (19%)
Query: 142 SGFNVVSLLVQNGLHNVKLVEKLLKNNNLIN---ILQNIEQMD------------TCYVC 186
+GF ++L V + E +KN ++ L+N E +D YV
Sbjct: 148 AGFKAIALTVDT--PRLGRREADIKNRFVLPPFLTLKNFEGLDLGKMDQASDSGLASYVA 205
Query: 187 IRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATN---SNHLGIQLQ 243
++ + L+ ++DV WL +P L K + A D++LA + A SNH QL
Sbjct: 206 GQIDRTLS----WKDVQWLQTITSLPILVKGVLTAEDARLAVQAGAAGIIVSNHGARQLD 261
Query: 244 Y 244
Y
Sbjct: 262 Y 262
>3OSJ-A nrPDB
Length = 147
Score = 31.2 bits (69), Expect = 0.92, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 387 FKKDNYKIFRQLIELLQAKVRNGDVNAKQ 415
F++D K + Q I L+++VRNGD++ K+
Sbjct: 37 FERDITKAYSQSISYLESQVRNGDISMKE 65
>1AL8-A nrPDB
Length = 359
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 24/121 (19%)
Query: 142 SGFNVVSLLVQNGLHNVKLVEKLLKNNNLIN---ILQNIEQMD------------TCYVC 186
+GF ++L V + E +KN ++ L+N E +D + YV
Sbjct: 147 AGFKAIALTVDT--PRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVA 204
Query: 187 IRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATN---SNHLGIQLQ 243
++ + L+ ++DV WL +P L K + A D++LA + A SNH QL
Sbjct: 205 GQIDRSLS----WKDVAWLQTITSLPILVKGVITAEDARLAVQHGAAGIIVSNHGARQLD 260
Query: 244 Y 244
Y
Sbjct: 261 Y 261
>3TVI-A nrPDB
Length = 446
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 70/182 (38%), Gaps = 39/182 (21%)
Query: 39 IDASTAKALESILVKKNIGDGLSSSNNAHSGFKVNGKTLIPLIH----------LLSTSD 88
ID A LE VKKNI +G SS A G +NG L ++ S
Sbjct: 88 IDMDIAYYLEK--VKKNIENGASSDYAASRGEYLNGVILAKYLNAEFIDAAEVIFFDKSG 145
Query: 89 NEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVS 148
D KKS + + ++LS +K + + S GD +T G +V
Sbjct: 146 CFDEKKSYEKIKEKVLSCNK-------------AVIPGFYGSSFNGDVKTFSRGGSDVTG 192
Query: 149 LLVQNGLHNVKLVE-------------KLLKNNNLINILQNIEQMDTCYVCIRLLQELAV 195
++ G+ N L E ++++N I+ + E + Y+ +L E A+
Sbjct: 193 SIISAGV-NADLYENWTDVSGFLMADPRIVENPKTISKISYKELRELSYMGATVLHEEAI 251
Query: 196 IP 197
P
Sbjct: 252 FP 253
>2CDH-0 nrPDB
Length = 226
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 199 YRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATN---SNHLGIQLQY 244
++DV WL +P L K + A D++LA + A SNH QL Y
Sbjct: 97 WKDVAWLQTITSLPILVKGVITAEDARLAVQHGAAGIIVSNHGARQLDY 145
>4QXD-A nrPDB
Length = 293
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 425 NDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEAL 466
NDI H+++ P+ +V K G A +M ++ H ++ + Y L
Sbjct: 176 NDIQHLIKSFPDPYEVKYKGGSGAKMMAII-HQEADIYYHPL 216
>5OQL-K nrPDB
Length = 938
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 344 EILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDE 386
E ++ E +E DE A S WS P V+ G WS DE
Sbjct: 662 ETVKQEAREKAEKDEASA--PSTAGAWSQPKVEAGAWSKPDDE 702
>1SXJ-C nrPDB
Length = 340
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 94 KSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 153
K+ N++ EL +SD G D V+ +D Q+F KG F+ +++ + ++ QN
Sbjct: 73 KNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFS---KG-FKLIILDEADAMTNAAQN 128
Query: 154 GLHNVKLVEKLLKN 167
L V +E+ KN
Sbjct: 129 ALRRV--IERYTKN 140
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
5VOY-P nrPDB 967 0.0
Sequences not found previously or not previously below threshold:
4KPA-A nrPDB 33 0.35
3TVI-A nrPDB 32 0.50
5JR6-A nrPDB 32 0.86
5WLC-SM nrPDB 32 0.86
3OSJ-A nrPDB 31 0.92
3J8C-K nrPDB 30 1.8
5ZBN-A nrPDB 30 2.1
5YZA-A nrPDB 30 2.3
5XWF-A nrPDB 30 2.5
2CDH-0 nrPDB 30 2.9
1AL8-A nrPDB 30 2.9
1SXJ-C nrPDB 30 3.0
6HR7-A nrPDB 30 3.0
2G30-A nrPDB 30 3.1
6FEC-6 nrPDB 30 3.2
5FJW-A nrPDB 28 6.1
4QXD-A nrPDB 28 6.3
5UYR-A nrPDB 28 7.9
CONVERGED!
>5VOY-P nrPDB
Length = 478
Score = 967 bits (2501), Expect = 0.0, Method: Composition-based stats.
Identities = 478/478 (100%), Positives = 478/478 (100%)
Query: 1 MGATKILMDSTHFNEIRSIIRSRSVAWDALARSEELSEIDASTAKALESILVKKNIGDGL 60
MGATKILMDSTHFNEIRSIIRSRSVAWDALARSEELSEIDASTAKALESILVKKNIGDGL
Sbjct: 1 MGATKILMDSTHFNEIRSIIRSRSVAWDALARSEELSEIDASTAKALESILVKKNIGDGL 60
Query: 61 SSSNNAHSGFKVNGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQED 120
SSSNNAHSGFKVNGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQED
Sbjct: 61 SSSNNAHSGFKVNGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQED 120
Query: 121 PKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQM 180
PKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQM
Sbjct: 121 PKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQM 180
Query: 181 DTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGI 240
DTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGI
Sbjct: 181 DTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGI 240
Query: 241 QLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCST 300
QLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCST
Sbjct: 241 QLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCST 300
Query: 301 RVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYV 360
RVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYV
Sbjct: 301 RVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYV 360
Query: 361 AELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIII 420
AELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIII
Sbjct: 361 AELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIII 420
Query: 421 QVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYTFK 478
QVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYTFK
Sbjct: 421 QVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYTFK 478
>4KPA-A nrPDB
Length = 494
Score = 32.7 bits (73), Expect = 0.35, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 358 EYVAELDSKLLCWSPP-HVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQE 416
EY E +L+ P H D W D+++EF+ + ++ + + NG ++
Sbjct: 368 EYPLEKGDELMVLIPQLHRDKTIWGDDVEEFRPERFENPSAIPQHAFKPFGNG----QRA 423
Query: 417 KIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELL 454
I Q AL++ T V+ ++ + D D T + DI E L
Sbjct: 424 CIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKETL 461
>3TVI-A nrPDB
Length = 446
Score = 32.3 bits (72), Expect = 0.50, Method: Composition-based stats.
Identities = 47/190 (24%), Positives = 75/190 (39%), Gaps = 41/190 (21%)
Query: 33 SEELSE--IDASTAKALESILVKKNIGDGLSSSNNAHSGFKVNGKTLIPLIH-------- 82
+E +SE ID A LE VKKNI +G SS A G +NG L ++
Sbjct: 80 TEIVSELNIDMDIAYYLEK--VKKNIENGASSDYAASRGEYLNGVILAKYLNAEFIDAAE 137
Query: 83 --LLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVL 140
S D KKS + + ++LS +K + + S GD +T
Sbjct: 138 VIFFDKSGCFDEKKSYEKIKEKVLSCNK-------------AVIPGFYGSSFNGDVKTFS 184
Query: 141 ISGFNVVSLLVQNGLHNVKLVE-------------KLLKNNNLINILQNIEQMDTCYVCI 187
G +V ++ G+ N L E ++++N I+ + E + Y+
Sbjct: 185 RGGSDVTGSIISAGV-NADLYENWTDVSGFLMADPRIVENPKTISKISYKELRELSYMGA 243
Query: 188 RLLQELAVIP 197
+L E A+ P
Sbjct: 244 TVLHEEAIFP 253
>5JR6-A nrPDB
Length = 664
Score = 31.6 bits (70), Expect = 0.86, Method: Composition-based stats.
Identities = 40/189 (21%), Positives = 81/189 (42%), Gaps = 29/189 (15%)
Query: 125 EQLFDVSLKGDFQTVLISGFNVVSLLVQ-------NGLHNVKLVEKLLKNNNLINI-LQN 176
+++F+ +F T+ G N + + N K+VEK++ NNN ++ ++
Sbjct: 104 DEIFETISSLEFNTIAFDGKNTSVVFYEKLRKALLNAYPKKKIVEKIIYNNNFDDVNKKD 163
Query: 177 IEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFM-----PTLFKILQ------RATDSQ 225
E + V + L E+ P +++H++K+ + K+ Q + D+
Sbjct: 164 DENVLNFLVLEKSLVEIKDYPVNNKTLYIHDRKYNGACAGEKIDKLKQSLMYDIKNVDNL 223
Query: 226 LATRI--VATNSNHLGIQLQYHSLLLIWLL--------TFNPVFANELVQKYLSDFLDLL 275
L + + +A N G QY L +LL F+ + V+ +D +LL
Sbjct: 224 LLSELDEIAYLLNLRGYDYQYSPLFYSYLLFQFDREEQDFSKIVFFTTVKNLPADVKNLL 283
Query: 276 KLVKITIKE 284
++ K+ +KE
Sbjct: 284 EINKVIVKE 292
>5WLC-SM nrPDB
Length = 290
Score = 31.6 bits (70), Expect = 0.86, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 300 TRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEY 359
++++Q +++IKQ L G LP + L+E + ++ R D S LKE E +L DEY
Sbjct: 23 SQLQQKRQIIKQALAQGKPLP--KELAEDESLQKDFRYDQS-LKE--SEEADDLQVDDEY 77
Query: 360 VA 361
A
Sbjct: 78 AA 79
>3OSJ-A nrPDB
Length = 147
Score = 31.2 bits (69), Expect = 0.92, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 387 FKKDNYKIFRQLIELLQAKVRNGDVNAKQ 415
F++D K + Q I L+++VRNGD++ K+
Sbjct: 37 FERDITKAYSQSISYLESQVRNGDISMKE 65
>3J8C-K nrPDB
Length = 208
Score = 30.4 bits (67), Expect = 1.8, Method: Composition-based stats.
Identities = 41/184 (22%), Positives = 76/184 (41%), Gaps = 26/184 (14%)
Query: 214 LFKILQRATDSQLAT--RIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDF 271
L K + R LAT R V T + L+ +L ++ L FNP F V +
Sbjct: 14 LLKGIDRYNPENLATLERYVETQAKENAYDLE-ANLAVLKLYQFNPAFFQTTVTAQI--- 69
Query: 272 LDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYS 331
LLK + + LC +C + Q ++ I+Q+L LG+ L T + +
Sbjct: 70 --LLKALT-NLPHTDFTLC-----KCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQAL 121
Query: 332 DEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDN 391
DE + ++LE +T F++ V + ++ + H+D ++ + +
Sbjct: 122 DENM--------DLLEG----ITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQ 169
Query: 392 YKIF 395
K++
Sbjct: 170 LKVW 173
>5ZBN-A nrPDB
Length = 371
Score = 30.0 bits (66), Expect = 2.1, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 199 YRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATN---SNHLGIQLQY 244
++DV WL +P L K + A D++LA + A SNH QL Y
Sbjct: 214 WKDVQWLQTITSLPILVKGVLTAEDARLAVQAGAAGIIVSNHGARQLDY 262
>5YZA-A nrPDB
Length = 525
Score = 30.0 bits (66), Expect = 2.3, Method: Composition-based stats.
Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 38/160 (23%)
Query: 353 LTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDE----FKKDN-------YKIFR----- 396
L +FD++ DSK C HVD W I E KD+ Y F+
Sbjct: 117 LAAFDQWREWADSKSCCDYSLHVDISEWHKGIQEEMEALVKDHGVNSFLVYMAFKDRFQL 176
Query: 397 ---QLIELL----------QAKVRNGDVNAKQEKIIIQVALNDIT-HVV--------ELL 434
Q+ E+L Q NGD+ A++++ I+ + + HV+ E +
Sbjct: 177 TDCQIYEVLSVIRDIGAIAQVHAENGDIIAEEQQRILDLGITGPEGHVLSRPEEVEAEAV 236
Query: 435 PESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 474
+I + ++T I ++++ S + V +A K + G
Sbjct: 237 NRAITIANQTNCPLYITKVMSKSSAEVIAQARKKGTVVYG 276
>5XWF-A nrPDB
Length = 378
Score = 30.0 bits (66), Expect = 2.5, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
Query: 354 TSFDEYVA---------ELDSKLLCWSPPHVDNGFWSDNIDEFKKDNY-KIFRQLIELLQ 403
+SFD +V+ +LD L W P+ NG ++ DE NY K+F+ L E L
Sbjct: 81 SSFDNFVSNLVDVVKEYDLDGLNLDWEYPNSPNGVACNSKDENDTANYLKLFKALREKLG 140
Query: 404 AK 405
+K
Sbjct: 141 SK 142
>2CDH-0 nrPDB
Length = 226
Score = 29.6 bits (65), Expect = 2.9, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 199 YRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATN---SNHLGIQLQY 244
++DV WL +P L K + A D++LA + A SNH QL Y
Sbjct: 97 WKDVAWLQTITSLPILVKGVITAEDARLAVQHGAAGIIVSNHGARQLDY 145
>1AL8-A nrPDB
Length = 359
Score = 29.6 bits (65), Expect = 2.9, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 199 YRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATN---SNHLGIQLQY 244
++DV WL +P L K + A D++LA + A SNH QL Y
Sbjct: 213 WKDVAWLQTITSLPILVKGVITAEDARLAVQHGAAGIIVSNHGARQLDY 261
>1SXJ-C nrPDB
Length = 340
Score = 29.6 bits (65), Expect = 3.0, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 94 KSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 153
K+ N++ EL +SD G D V+ +D Q+F KG F+ +++ + ++ QN
Sbjct: 73 KNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFS---KG-FKLIILDEADAMTNAAQN 128
Query: 154 GLHNVKLVEKLLKN 167
L V +E+ KN
Sbjct: 129 ALRRV--IERYTKN 140
>6HR7-A nrPDB
Length = 427
Score = 29.6 bits (65), Expect = 3.0, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 21 RSRSVAWDALARSEELSEIDASTAKALESILVKKN-IGDGLSSSN--NAH 67
R +S+ + + EE+ + +T+KA+E + + KN IG +S+S NAH
Sbjct: 268 RGKSIIAEVFLKEEEIKKYLKTTSKAIEQVNMYKNLIGSAISNSMGFNAH 317
>2G30-A nrPDB
Length = 258
Score = 29.6 bits (65), Expect = 3.1, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 116 FFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQ 175
F ED K Q+F + K I N + ++ N V L+NNN+ I +
Sbjct: 146 LFVEDGKMERQVFLATWKD------IPNENELQFQIKECHLNADTVSSKLQNNNVYTIAK 199
Query: 176 -NIEQMDTCYVCIRLLQELAVIPEYR 200
N+E D Y ++L + ++ E R
Sbjct: 200 RNVEGQDMLYQSLKLTNGIWILAELR 225
>6FEC-6 nrPDB
Length = 218
Score = 29.6 bits (65), Expect = 3.2, Method: Composition-based stats.
Identities = 41/184 (22%), Positives = 76/184 (41%), Gaps = 26/184 (14%)
Query: 214 LFKILQRATDSQLAT--RIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDF 271
L K + R LAT R V T + L+ +L ++ L FNP F V +
Sbjct: 14 LLKGIDRYNPENLATLERYVETQAKENAYDLE-ANLAVLKLYQFNPAFFQTTVTAQI--- 69
Query: 272 LDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYS 331
LLK + + LC +C + Q ++ I+Q+L LG+ L T + +
Sbjct: 70 --LLKALT-NLPHTDFTLC-----KCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQAL 121
Query: 332 DEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDN 391
DE + ++LE +T F++ V + ++ + H+D ++ + +
Sbjct: 122 DENM--------DLLEG----ITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLTDSQ 169
Query: 392 YKIF 395
K++
Sbjct: 170 LKMW 173
>5FJW-A nrPDB
Length = 270
Score = 28.5 bits (62), Expect = 6.1, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 390 DNYKIFRQLIELLQAKV-RNGDVNAKQEKIIIQVALND--ITHVVELLPESIDVLDKT 444
+N I + E++ A+ R+G +++ + K ++++ +ND ++H L +SIDV DK+
Sbjct: 11 ENNGILISIKEVINAEFSRDGTIHSSELKGVLELRINDHDLSHSNLKLADSIDVRDKS 68
>4QXD-A nrPDB
Length = 293
Score = 28.5 bits (62), Expect = 6.3, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 425 NDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEAL 466
NDI H+++ P+ +V K G A +M ++ H ++ + Y L
Sbjct: 176 NDIQHLIKSFPDPYEVKYKGGSGAKMMAII-HQEADIYYHPL 216
>5UYR-A nrPDB
Length = 640
Score = 28.1 bits (61), Expect = 7.9, Method: Composition-based stats.
Identities = 31/142 (21%), Positives = 57/142 (40%), Gaps = 16/142 (11%)
Query: 339 ISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQL 398
++ L++I + SFD + + + WSP H+++ + E + K F+Q
Sbjct: 464 LAKLEDIPNSRLSPRKSFDLWQQTVRGRARRWSPLHLESARSLRVLIELMER--KRFQQD 521
Query: 399 IELLQAK----------VRNGDVNAKQEKIIIQVALNDI--THVVELLPESIDVLDKTGG 446
LL+A + G NA + + A D+ + V EL+ + L +
Sbjct: 522 FTLLEASLSRLRDGVAIIERGTANAAHRLLFVNTAFADVCGSDVAELIGRELQTLYASDA 581
Query: 447 KADIMELLNHS--DSRVKYEAL 466
+ELL + + R Y L
Sbjct: 582 PRANVELLQDALRNGRAAYVTL 603
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.319 0.135 0.378
Lambda K H
0.267 0.0448 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,755,554
Number of Sequences: 36641
Number of extensions: 870670
Number of successful extensions: 2632
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 2624
Number of HSP's gapped (non-prelim): 49
length of query: 478
length of database: 10,336,785
effective HSP length: 101
effective length of query: 377
effective length of database: 6,636,044
effective search space: 2501788588
effective search space used: 2501788588
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.0 bits)