BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P41391 (386 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 2CA6-A nrPDB 776 0.0 2BNH-A nrPDB 39 0.003 2Q4G-W nrPDB 37 0.010 4PEQ-B nrPDB 33 0.31 5Y3M-A nrPDB 32 0.50 3TSR-E nrPDB 30 1.4 3NCO-A nrPDB 30 1.4 6IP6-2L nrPDB 29 2.7 4K17-A nrPDB 29 3.6 3PEW-A nrPDB 28 6.7 5YYS-A nrPDB 28 7.9 >2CA6-A nrPDB Length = 386 Score = 776 bits (2003), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/386 (99%), Positives = 386/386 (100%) Query: 1 MSRFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 60 M+RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK Sbjct: 1 MARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 60 Query: 61 DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK 120 DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK Sbjct: 61 DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK 120 Query: 121 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA Sbjct: 121 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 Query: 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 240 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL Sbjct: 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 240 Query: 241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE 300 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE Sbjct: 241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE 300 Query: 301 KMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTDEEEEDEEEEAES 360 KMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTDEEEEDEEEEAES Sbjct: 301 KMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTDEEEEDEEEEAES 360 Query: 361 QSPEPETSEEEKEDKELADELSKAHI 386 QSPEPETSEEEKEDKELADELSKAHI Sbjct: 361 QSPEPETSEEEKEDKELADELSKAHI 386 >2BNH-A nrPDB Length = 457 Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust. Identities = 80/344 (23%), Positives = 134/344 (38%), Gaps = 38/344 (11%) Query: 15 AITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIAS------KKDLEIAEFS 68 +T E K + + L + S+ E+ L N +G + + + S K L+ + Sbjct: 35 GLTEEHCKDIGSALRANPSLTELCLRTNELGDAGVHLVLQGLQSPTCKIQKLSLQNCSLT 94 Query: 69 DIFTGRVKDEIPE-----------------ALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 + G + + LRLL + LL P+ H +L TA Sbjct: 95 EAGCGVLPSTLRSLPTLRELHLSDNPLGDAGLRLLCEGLLD-PQCHLEKLQLEYCRLTAA 153 Query: 112 --EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 EPL L L+ L + NN +G +AGA++ Q LA A LR CG Sbjct: 154 SCEPLASVLRATRALKELTVSNNDIG-EAGARVLG--QGLA--DSACQLETLRLENCG-- 206 Query: 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229 L + K+ S L + + NG+ GI L L+ LK L L + T Sbjct: 207 -LTPANCKDLCGIVASQASLRELDLGSNGLGDAGIAELCPGLLSPASRLKTLWLWECDIT 265 Query: 230 HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD 289 G L L++ L+EL L L GA + ++ + L++L ++ + Sbjct: 266 ASGCRDLCRVLQAKETLKELSLAGNKLGDEGARLLCESLLQ-PGCQLESLWVKSCSLTAA 324 Query: 290 AVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRG 333 + + ++ + LL L+L+ N+ D + E+ + S G Sbjct: 325 CCQHVSLMLTQN-KHLLELQLSSNKLG--DSGIQELCQALSQPG 365 >2Q4G-W nrPDB Length = 461 Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 5/114 (4%) Query: 206 HLLLEGLAY--CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 H +L+GL C+ ++ L LQ+ T G L+ L++ P L+EL L+D LL G Sbjct: 74 HCVLQGLQTPSCK-IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL 132 Query: 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 + + L+ L+L+Y + + L +V+ K PD L ++ N +E Sbjct: 133 LCEGLLD-PQCRLEKLQLEYCSLSAASCEPLASVLRAK-PDFKELTVSNNDINE 184 Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust. Identities = 16/42 (38%), Positives = 24/42 (57%) Query: 15 AITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENI 56 IT + + VL +S+KE+ L+GN +G E AR L E + Sbjct: 267 GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL 308 >4PEQ-B nrPDB Length = 456 Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 13/134 (9%) Query: 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL--AYCQELKVLDLQDNTFTHLGS 233 K+ Q++ L + + N + G+ L+L+GL C+ ++ L LQ+ T G Sbjct: 40 CKDIGSALQANASLTELSLRTNELGDGGV-LLVLQGLQSPTCK-IQKLSLQNCCLTEAGC 97 Query: 234 SALAIALKSWPNLRELGLNDCLLSARG----AAAVVDAFSKLENIGLQTLRLQYNEIE-- 287 L L+S P LREL L+D L G ++D +LE + L+ L E Sbjct: 98 GVLPGVLRSLPTLRELHLSDNPLGDAGLRLLCEGLLDPRCRLEKLQLEYCSLTAASCEPL 157 Query: 288 ---LDAVRTLKTVI 298 L A R LK ++ Sbjct: 158 AAVLRATRDLKELV 171 Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust. Identities = 84/333 (25%), Positives = 126/333 (37%), Gaps = 46/333 (13%) Query: 3 RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIA-SKKD 61 R +E L+ ++T + + AVL +KE+V+S N IG + L +A S Sbjct: 136 RCRLEKLQLEYCSLTAASCEPLAAVLRATRDLKELVVSNNDIGEAGVQALCRGLAESACQ 195 Query: 62 LEIAEF--SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119 LE + + KD QA LK L + RL D E LS Sbjct: 196 LETLKLENCGLTAANCKDLCGIVAS---QASLKDLDLGSNRLGDAGLA----ELCPGLLS 248 Query: 120 KHTPLEHLYLHNNGLGPQAGAKIARALQ--------ELAVNKKAKNAPPLRSIICGRNRL 171 + L L+L L ++ R LQ LA N L +C + L Sbjct: 249 PSSQLRTLWLWECDLTVSGCRELCRVLQAKEALKELSLAGNSLGDEGAQL---LC-ESLL 304 Query: 172 ENGSMKE--WAKT--FQSHRLLHTVKMV------------QNGIRPEGIEHLLLEGLAY- 214 + G E W K+ F + H M+ N + G+ H+L + L Sbjct: 305 QPGCQLESLWVKSCGFTAACCQHFSSMLTQNKHLLELQLSSNPLGDAGV-HVLCQALGQP 363 Query: 215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLEN- 273 L+VL + D T+ LA L + P+LREL L++ + G V+ LE Sbjct: 364 GTVLRVLWVGDCELTNSSCGGLASLLLASPSLRELDLSN---NGLGDPGVLQLLGSLEQP 420 Query: 274 -IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 305 L+ L L Y+ +AV ++E P L Sbjct: 421 ACSLEQLVL-YDIYWTEAVDERLRAVEESKPGL 452 >5Y3M-A nrPDB Length = 801 Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%) Query: 268 FSKLENIGLQTL----RLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVD 323 F L NI LQ+L +LQ ++L+ + + I P LLF++L+ NR S Sbjct: 355 FRSLTNITLQSLTRLPKLQSLHLQLNFINQAQLSIFGAFPSLLFVDLSDNRISGAATPAA 414 Query: 324 EIREV 328 + EV Sbjct: 415 ALGEV 419 >3TSR-E nrPDB Length = 457 Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 5/127 (3%) Query: 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL--AYCQELKVLDLQDNTFTHLGSS 234 K+ + Q++ L + + N + G+ L+L+GL C+ ++ L LQ+ T G Sbjct: 42 KDISSAVQANPALTELSLRTNELGDGGV-GLVLQGLQNPTCK-IQKLSLQNCGLTEAGCG 99 Query: 235 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 294 L L+S LREL LND + G + + L+ L+L+Y + + L Sbjct: 100 ILPGMLRSLSTLRELHLNDNPMGDAGLKLLCEGLQD-PQCRLEKLQLEYCNLTATSCEPL 158 Query: 295 KTVIDEK 301 +V+ K Sbjct: 159 ASVLRVK 165 >3NCO-A nrPDB Length = 320 Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 4/88 (4%) Query: 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR 84 + V +ED+ K I G RW S +I+ K EI +F F RVK + AL+ Sbjct: 38 WGVYIEDEYFKIIKERGFDSVRIPIRW-SAHISEKYPYEIDKF---FLDRVKHVVDVALK 93 Query: 85 LLLQALLKCPKLHTVRLSDNAFGPTAQE 112 L ++ C + + + +GP E Sbjct: 94 NDLVVIINCHHFEELYQAPDKYGPVLVE 121 >6IP6-2L nrPDB Length = 196 Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust. Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Query: 298 IDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGEL--DELDDMEELTDEEEEDEE 355 ID M L+L++ GN F + +++ I ++ + + R +L D+ + T E + E Sbjct: 115 IDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRRE 174 Query: 356 EEAESQSPE 364 E +++ E Sbjct: 175 ERLQAKKEE 183 >4K17-A nrPDB Length = 669 Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 15/128 (11%) Query: 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171 E ++ +S+ LE L L N GL K+A AL A N + L +I N L Sbjct: 237 EQILRVVSRSNRLEELVLENAGLRIDFAQKLAGAL---AHNPNSG----LHTINLAGNSL 289 Query: 172 ENGSMKEWAKTFQS-HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH 230 E+ + + F + L + + + + P+G+ L CQ L L +T TH Sbjct: 290 EDRGVSSLSIQFAKLPKGLKHLNLSKTSLSPKGVNSL-------CQSLSANPLTASTLTH 342 Query: 231 LGSSALAI 238 L S A+ Sbjct: 343 LDLSGNAL 350 >3PEW-A nrPDB Length = 395 Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 8/97 (8%) Query: 201 PEGIEHLLLEGLAYCQELK--VLDLQDNTFTHLGSSALAIALKSW-PNLRELGLNDCLLS 257 P + L+ L Q++K VLD DN G I +K + P +L L S Sbjct: 129 PGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQL----VLFS 184 Query: 258 ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 294 A A AV ++K TL LQ NE+ +DA++ L Sbjct: 185 ATFADAV-RQYAKKIVPNANTLELQTNEVNVDAIKQL 220 >5YYS-A nrPDB Length = 949 Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 7/61 (11%) Query: 103 DNAFGPTAQEPLIDFLSKHTPLEHL-------YLHNNGLGPQAGAKIARALQELAVNKKA 155 D+ P A E +ID + +T L YL+ PQA +I + L E A N +A Sbjct: 873 DSGTNPPAVEAIIDLIKDYTLGYKLPGAGGGGYLYMVAKDPQAAVRIRKILTENAPNPRA 932 Query: 156 K 156 + Sbjct: 933 R 933 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 2CA6-A nrPDB 710 0.0 Sequences not found previously or not previously below threshold: 2BNH-A nrPDB 39 0.003 2Q4G-W nrPDB 39 0.003 4PEQ-B nrPDB 35 0.078 5Y3M-A nrPDB 33 0.30 3TSR-E nrPDB 32 0.56 3NCO-A nrPDB 29 3.2 5YYS-A nrPDB 28 4.8 4IKM-A nrPDB 28 5.4 3PEW-A nrPDB 28 5.5 6IP6-2L nrPDB 28 5.5 5LR8-A nrPDB 28 6.1 5WWN-A nrPDB 28 6.8 3ROS-A nrPDB 28 7.1 6FAI-k nrPDB 28 7.2 4M75-A nrPDB 28 7.8 3RG1-A nrPDB 28 9.1 CONVERGED! >2CA6-A nrPDB Length = 386 Score = 710 bits (1834), Expect = 0.0, Method: Composition-based stats. Identities = 385/386 (99%), Positives = 386/386 (100%) Query: 1 MSRFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 60 M+RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK Sbjct: 1 MARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 60 Query: 61 DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK 120 DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK Sbjct: 61 DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK 120 Query: 121 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA Sbjct: 121 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 Query: 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 240 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL Sbjct: 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 240 Query: 241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE 300 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE Sbjct: 241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE 300 Query: 301 KMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTDEEEEDEEEEAES 360 KMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTDEEEEDEEEEAES Sbjct: 301 KMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTDEEEEDEEEEAES 360 Query: 361 QSPEPETSEEEKEDKELADELSKAHI 386 QSPEPETSEEEKEDKELADELSKAHI Sbjct: 361 QSPEPETSEEEKEDKELADELSKAHI 386 >2BNH-A nrPDB Length = 457 Score = 39.2 bits (90), Expect = 0.003, Method: Composition-based stats. Identities = 56/189 (29%), Positives = 78/189 (41%), Gaps = 11/189 (5%) Query: 82 ALRLLLQALLKCPKLHTVRLSDNAFGPTAQ--EPLIDFLSKHTPLEHLYLHNNGLGPQAG 139 LRLL + LL P+ H +L TA EPL L L+ L + NN +G +AG Sbjct: 125 GLRLLCEGLLD-PQCHLEKLQLEYCRLTAASCEPLASVLRATRALKELTVSNNDIG-EAG 182 Query: 140 AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGI 199 A++ Q LA A LR CG L + K+ S L + + NG+ Sbjct: 183 ARVLG--QGLA--DSACQLETLRLENCG---LTPANCKDLCGIVASQASLRELDLGSNGL 235 Query: 200 RPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259 GI L L+ LK L L + T G L L++ L+EL L L Sbjct: 236 GDAGIAELCPGLLSPASRLKTLWLWECDITASGCRDLCRVLQAKETLKELSLAGNKLGDE 295 Query: 260 GAAAVVDAF 268 GA + ++ Sbjct: 296 GARLLCESL 304 Score = 39.2 bits (90), Expect = 0.003, Method: Composition-based stats. Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 10/100 (10%) Query: 206 HLLLEGL-AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG---- 260 HL+L+GL + +++ L LQ+ + T G L L+S P LREL L+D L G Sbjct: 70 HLVLQGLQSPTCKIQKLSLQNCSLTEAGCGVLPSTLRSLPTLRELHLSDNPLGDAGLRLL 129 Query: 261 AAAVVDAFSKLENIGLQTLRLQYNEIE-----LDAVRTLK 295 ++D LE + L+ RL E L A R LK Sbjct: 130 CEGLLDPQCHLEKLQLEYCRLTAASCEPLASVLRATRALK 169 Score = 31.1 bits (69), Expect = 0.84, Method: Composition-based stats. Identities = 56/267 (20%), Positives = 99/267 (37%), Gaps = 45/267 (16%) Query: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65 +E L+ +T + + +VL ++KE+ +S N IG AR L + +A Sbjct: 140 LEKLQLEYCRLTAASCEPLASVLRATRALKELTVSNNDIGEAGARVLGQGLADSA----- 194 Query: 66 EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125 C +L T+RL + P + L ++ L Sbjct: 195 ---------------------------C-QLETLRLENCGLTPANCKDLCGIVASQASLR 226 Query: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 L L +NGLG A++ L A L+++ + ++ + Q+ Sbjct: 227 ELDLGSNGLGDAGIAELCPGL--------LSPASRLKTLWLWECDITASGCRDLCRVLQA 278 Query: 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAY--CQELKVLDLQDNTFTHLGSSALAIALKSW 243 L + + N + EG LL E L CQ L+ L ++ + T +++ L Sbjct: 279 KETLKELSLAGNKLGDEG-ARLLCESLLQPGCQ-LESLWVKSCSLTAACCQHVSLMLTQN 336 Query: 244 PNLRELGLNDCLLSARGAAAVVDAFSK 270 +L EL L+ L G + A S+ Sbjct: 337 KHLLELQLSSNKLGDSGIQELCQALSQ 363 >2Q4G-W nrPDB Length = 461 Score = 39.2 bits (90), Expect = 0.003, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 3/113 (2%) Query: 206 HLLLEGLAYCQ-ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 264 H +L+GL +++ L LQ+ T G L+ L++ P L+EL L+D LL G + Sbjct: 74 HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLL 133 Query: 265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 + + L+ L+L+Y + + L +V+ K PD L ++ N +E Sbjct: 134 CEGLLDPQ-CRLEKLQLEYCSLSAASCEPLASVLRAK-PDFKELTVSNNDINE 184 Score = 30.0 bits (66), Expect = 1.8, Method: Composition-based stats. Identities = 14/30 (46%), Positives = 20/30 (66%) Query: 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENI 56 VL +S+KE+ L+GN +G E AR L E + Sbjct: 279 VLRAKESLKELSLAGNELGDEGARLLCETL 308 >4PEQ-B nrPDB Length = 456 Score = 34.6 bits (78), Expect = 0.078, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 11/132 (8%) Query: 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL-AYCQELKVLDLQDNTFTHLGSSA 235 K+ Q++ L + + N + G+ L+L+GL + +++ L LQ+ T G Sbjct: 41 KDIGSALQANASLTELSLRTNELGDGGV-LLVLQGLQSPTCKIQKLSLQNCCLTEAGCGV 99 Query: 236 LAIALKSWPNLRELGLNDCLLSARG----AAAVVDAFSKLENIGLQTLRLQYNEIE---- 287 L L+S P LREL L+D L G ++D +LE + L+ L E Sbjct: 100 LPGVLRSLPTLRELHLSDNPLGDAGLRLLCEGLLDPRCRLEKLQLEYCSLTAASCEPLAA 159 Query: 288 -LDAVRTLKTVI 298 L A R LK ++ Sbjct: 160 VLRATRDLKELV 171 Score = 28.8 bits (63), Expect = 3.9, Method: Composition-based stats. Identities = 75/333 (22%), Positives = 124/333 (37%), Gaps = 46/333 (13%) Query: 3 RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIA-SKKD 61 R +E L+ ++T + + AVL +KE+V+S N IG + L +A S Sbjct: 136 RCRLEKLQLEYCSLTAASCEPLAAVLRATRDLKELVVSNNDIGEAGVQALCRGLAESACQ 195 Query: 62 LEIAEFSD--IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG--------PTAQ 111 LE + + + KD QA LK L + RL D P++Q Sbjct: 196 LETLKLENCGLTAANCKDLCGIVAS---QASLKDLDLGSNRLGDAGLAELCPGLLSPSSQ 252 Query: 112 ----------------EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKA 155 L L L+ L L N LG + + +L + Sbjct: 253 LRTLWLWECDLTVSGCRELCRVLQAKEALKELSLAGNSLGDEGAQLLCESLLQPGCQ--- 309 Query: 156 KNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC 215 L S+ + ++ ++ L +++ N + G+ H+L + L Sbjct: 310 -----LESLWVKSCGFTAACCQHFSSMLTQNKHLLELQLSSNPLGDAGV-HVLCQALGQP 363 Query: 216 QE-LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLEN- 273 L+VL + D T+ LA L + P+LREL L++ + G V+ LE Sbjct: 364 GTVLRVLWVGDCELTNSSCGGLASLLLASPSLRELDLSN---NGLGDPGVLQLLGSLEQP 420 Query: 274 -IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 305 L+ L L Y+ +AV ++E P L Sbjct: 421 ACSLEQLVL-YDIYWTEAVDERLRAVEESKPGL 452 >5Y3M-A nrPDB Length = 801 Score = 32.6 bits (73), Expect = 0.30, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%) Query: 268 FSKLENIGLQTL----RLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 F L NI LQ+L +LQ ++L+ + + I P LLF++L+ NR S Sbjct: 355 FRSLTNITLQSLTRLPKLQSLHLQLNFINQAQLSIFGAFPSLLFVDLSDNRIS 407 >3TSR-E nrPDB Length = 457 Score = 31.9 bits (71), Expect = 0.56, Method: Composition-based stats. Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 6/143 (4%) Query: 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA--YCQELKVLDLQDNTFTHLGSS 234 K+ + Q++ L + + N + G+ L+L+GL C+ ++ L LQ+ T G Sbjct: 42 KDISSAVQANPALTELSLRTNELGDGGV-GLVLQGLQNPTCK-IQKLSLQNCGLTEAGCG 99 Query: 235 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 294 L L+S LREL LND + G + + + L+ L+L+Y + + L Sbjct: 100 ILPGMLRSLSTLRELHLNDNPMGDAGLKLLCEGLQDPQ-CRLEKLQLEYCNLTATSCEPL 158 Query: 295 KTVIDEKMPDLLFLELNGNRFSE 317 +V+ K D L L+ N E Sbjct: 159 ASVLRVK-ADFKELVLSNNDLHE 180 >3NCO-A nrPDB Length = 320 Score = 29.2 bits (64), Expect = 3.2, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 4/88 (4%) Query: 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR 84 + V +ED+ K I G RW S +I+ K EI +F F RVK + AL+ Sbjct: 38 WGVYIEDEYFKIIKERGFDSVRIPIRW-SAHISEKYPYEIDKF---FLDRVKHVVDVALK 93 Query: 85 LLLQALLKCPKLHTVRLSDNAFGPTAQE 112 L ++ C + + + +GP E Sbjct: 94 NDLVVIINCHHFEELYQAPDKYGPVLVE 121 >5YYS-A nrPDB Length = 949 Score = 28.4 bits (62), Expect = 4.8, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 7/61 (11%) Query: 103 DNAFGPTAQEPLIDFLSKHTPLEHL-------YLHNNGLGPQAGAKIARALQELAVNKKA 155 D+ P A E +ID + +T L YL+ PQA +I + L E A N +A Sbjct: 873 DSGTNPPAVEAIIDLIKDYTLGYKLPGAGGGGYLYMVAKDPQAAVRIRKILTENAPNPRA 932 Query: 156 K 156 + Sbjct: 933 R 933 >4IKM-A nrPDB Length = 469 Score = 28.4 bits (62), Expect = 5.4, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 19/29 (65%) Query: 334 RGELDELDDMEELTDEEEEDEEEEAESQS 362 +G LD+L D E LT+ E+E E+E QS Sbjct: 390 KGVLDDLQDNEVLTENEKELVEQEKTRQS 418 >3PEW-A nrPDB Length = 395 Score = 28.4 bits (62), Expect = 5.5, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 8/97 (8%) Query: 201 PEGIEHLLLEGLAYCQELK--VLDLQDNTFTHLGSSALAIALKSW-PNLRELGLNDCLLS 257 P + L+ L Q++K VLD DN G I +K + P +L L S Sbjct: 129 PGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQL----VLFS 184 Query: 258 ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 294 A A AV ++K TL LQ NE+ +DA++ L Sbjct: 185 ATFADAV-RQYAKKIVPNANTLELQTNEVNVDAIKQL 220 >6IP6-2L nrPDB Length = 196 Score = 28.4 bits (62), Expect = 5.5, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 3/82 (3%) Query: 298 IDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGEL--DELDDMEELTDEEEEDEE 355 ID M L+L++ GN F + +++ I ++ + + R +L D+ + T E + E Sbjct: 115 IDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRRE 174 Query: 356 EEAESQSPE-PETSEEEKEDKE 376 E +++ E +T +E+E K+ Sbjct: 175 ERLQAKKEEIIKTLSKEEETKK 196 >5LR8-A nrPDB Length = 938 Score = 28.4 bits (62), Expect = 6.1, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 24/43 (55%) Query: 335 GELDELDDMEELTDEEEEDEEEEAESQSPEPETSEEEKEDKEL 377 E DE + +E+ + E E++AES S E +E+E + EL Sbjct: 470 AEADEKTESQEVENILSETTEKKAESDSEEAPDAEKEDPEYEL 512 >5WWN-A nrPDB Length = 709 Score = 28.0 bits (61), Expect = 6.8, Method: Composition-based stats. Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 18/81 (22%) Query: 319 DDVVD--EIREVFSTRGRGE-LDELDD-MEELTDEEEEDEEEEAESQSPE---------- 364 DDV+D E E T G+ E + E+DD M D EE +EE + + E Sbjct: 327 DDVIDANEEEEAEQTNGKDETMMEIDDEMMVEQDNEEVAGDEEYDIEDNEGFEELSPEEE 386 Query: 365 ----PETSEEEKEDKELADEL 381 E + EKED+E DE+ Sbjct: 387 ERQLREFRDMEKEDREFPDEI 407 >3ROS-A nrPDB Length = 484 Score = 28.0 bits (61), Expect = 7.1, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 27/120 (22%) Query: 257 SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF- 315 S RG +AV +A K N+ T+ L N+ + V+D+ P +L LN R Sbjct: 210 SERGGSAVAEAAGK--NLKKSTMELGGNDAFI--------VLDDADPQVLRNVLNDARTY 259 Query: 316 ----------------SEEDDVVDEIREVFSTRGRGELDELDDMEELTDEEEEDEEEEAE 359 S D+V+ E++ VFS G+ E D + E+ E+ EA+ Sbjct: 260 NDGQVCTSSKRIIVEKSRYDEVLHELKNVFSNLKAGDPLEADTTLPPMNSEKAKEKLEAQ 319 >6FAI-k nrPDB Length = 788 Score = 28.0 bits (61), Expect = 7.2, Method: Composition-based stats. Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 18/81 (22%) Query: 319 DDVVD--EIREVFSTRGRGE-LDELDD-MEELTDEEEEDEEEEAESQSPE---------- 364 DDV+D E E T G+ E + E+DD M D EE +EE + + E Sbjct: 406 DDVIDANEEEEAEQTNGKDETMMEIDDEMMVEQDNEEVAGDEEYDIEDNEGFEELSPEEE 465 Query: 365 ----PETSEEEKEDKELADEL 381 E + EKED+E DE+ Sbjct: 466 ERQLREFRDMEKEDREFPDEI 486 >4M75-A nrPDB Length = 144 Score = 28.0 bits (61), Expect = 7.8, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 7/72 (9%) Query: 315 FSEEDDVVDEIREVFSTRGRGELDELDDMEELTDEEEEDEEEEAESQSPEPET--SEEEK 372 FSEE+ +E R +F RG + M D ++ED+ EA + P E ++++ Sbjct: 60 FSEENKYAEEDRGIFMIRGENVV-----MLGEVDIDKEDQPLEAMERIPFKEAWLTKQKN 114 Query: 373 EDKELADELSKA 384 ++K +E K Sbjct: 115 DEKRFKEETHKG 126 >3RG1-A nrPDB Length = 612 Score = 27.6 bits (60), Expect = 9.1, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 11/67 (16%) Query: 182 TFQSHRLLHTVKMVQNGI---------RPEGIEHLLL--EGLAYCQELKVLDLQDNTFTH 230 TFQSH L+T+ + N + P+ ++HL L G++ + + V +L++ H Sbjct: 75 TFQSHHQLNTIVLTGNPLIFMAETSLTGPKFLKHLFLTQTGISNLEFIPVHNLENLESLH 134 Query: 231 LGSSALA 237 LGS+ ++ Sbjct: 135 LGSNHIS 141 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.314 0.141 0.414 Lambda K H 0.267 0.0411 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,703,749 Number of Sequences: 36641 Number of extensions: 615262 Number of successful extensions: 4245 Number of sequences better than 10.0: 115 Number of HSP's better than 10.0 without gapping: 139 Number of HSP's successfully gapped in prelim test: 98 Number of HSP's that attempted gapping in prelim test: 2505 Number of HSP's gapped (non-prelim): 935 length of query: 386 length of database: 10,336,785 effective HSP length: 99 effective length of query: 287 effective length of database: 6,709,326 effective search space: 1925576562 effective search space used: 1925576562 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 60 (27.7 bits)