BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= P41052
         (361 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

1D0M-A nrPDB                                                          666   0.0  
5O8X-A nrPDB                                                          278   3e-75
5ANZ-A nrPDB                                                          114   6e-26
3MGW-A nrPDB                                                           35   0.067
3W77-A nrPDB                                                           32   0.49 
4JGA-A nrPDB                                                           32   0.54 
5T5H-f nrPDB                                                           30   1.3  
5OES-A nrPDB                                                           29   3.1  
4TVY-A nrPDB                                                           28   5.4  
3NJT-A nrPDB                                                           28   6.2  
2VYN-D nrPDB                                                           27   9.7  
4Q86-A nrPDB                                                           27   10.0 

>1D0M-A nrPDB
          Length = 322

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/322 (99%), Positives = 322/322 (100%)

Query: 40  LLEPQHNVMQMGGDFANNPNAQQFIDKMVNKHGFDRQQLQEILSQAKRLDSVLRLMDNQA 99
           ++EPQHNVMQMGGDFANNPNAQQFIDKMVNKHGFDRQQLQEILSQAKRLDSVLRLMDNQA
Sbjct: 1   MVEPQHNVMQMGGDFANNPNAQQFIDKMVNKHGFDRQQLQEILSQAKRLDSVLRLMDNQA 60

Query: 100 PTTSVKPPSGPNGAWLRYRKKFITPDNVQNGVVFWNQYEDALNRAWQVYGVPPEIIVGII 159
           PTTSVKPPSGPNGAWLRYRKKFITPDNVQNGVVFWNQYEDALNRAWQVYGVPPEIIVGII
Sbjct: 61  PTTSVKPPSGPNGAWLRYRKKFITPDNVQNGVVFWNQYEDALNRAWQVYGVPPEIIVGII 120

Query: 160 GVETRWGRVMGKTRILDALATLSFNYPRRAEYFSGELETFLLMARDEQDDPLNLKGSFAG 219
           GVETRWGRVMGKTRILDALATLSFNYPRRAEYFSGELETFLLMARDEQDDPLNLKGSFAG
Sbjct: 121 GVETRWGRVMGKTRILDALATLSFNYPRRAEYFSGELETFLLMARDEQDDPLNLKGSFAG 180

Query: 220 AMGYGQFMPSSYKQYAVDFSGDGHINLWDPVDAIGSVANYFKAHGWVKGDQVAVMANGQA 279
           AMGYGQFMPSSYKQYAVDFSGDGHINLWDPVDAIGSVANYFKAHGWVKGDQVAVMANGQA
Sbjct: 181 AMGYGQFMPSSYKQYAVDFSGDGHINLWDPVDAIGSVANYFKAHGWVKGDQVAVMANGQA 240

Query: 280 PGLPNGFKTKYSISQLAAAGLTPQQPLGNHQQASLLRLDVGTGYQYWYGLPNFYTITRYN 339
           PGLPNGFKTKYSISQLAAAGLTPQQPLGNHQQASLLRLDVGTGYQYWYGLPNFYTITRYN
Sbjct: 241 PGLPNGFKTKYSISQLAAAGLTPQQPLGNHQQASLLRLDVGTGYQYWYGLPNFYTITRYN 300

Query: 340 HSTHYAMAVWQLGQAVALARVQ 361
           HSTHYAMAVWQLGQAVALARVQ
Sbjct: 301 HSTHYAMAVWQLGQAVALARVQ 322


>5O8X-A nrPDB
          Length = 306

 Score =  278 bits (710), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 145/312 (46%), Positives = 189/312 (60%), Gaps = 14/312 (4%)

Query: 53  DFANNPNAQQFIDKMVNKHGFDRQQLQEILSQAKRLDSVLRLMDNQAPTTSVKPPSGPNG 112
           D+  +P   +F+ +M   +GF  +QL  +     R  S+L  +    P   VK       
Sbjct: 1   DYDGSPQVAEFVSEMTRDYGFAGEQLMGLFRDVNRKQSILDAISR--PAERVK------- 51

Query: 113 AWLRYRKKFITPDNVQNGVVFWNQYEDALNRAWQVYGVPPEIIVGIIGVETRWGRVMGKT 172
            W  YR  FI+   +  GV FWN++ + L RA + YGVP EIIV IIGVET +GR  G  
Sbjct: 52  QWKEYRPIFISDARISRGVDFWNKHAEDLARAEKEYGVPAEIIVSIIGVETFFGRNTGSY 111

Query: 173 RILDALATLSFNYPRRAEYFSGELETFLLMARDEQDDPLNLKGSFAGAMGYGQFMPSSYK 232
           R++DAL+TL F+YP RA++F  EL  FLL+AR++Q DPL+L GS+AGAMG  QFMPSS++
Sbjct: 112 RVMDALSTLGFDYPPRADFFRKELREFLLLAREQQVDPLSLTGSYAGAMGLPQFMPSSFR 171

Query: 233 QYAVDFSGDGHINLW-DPVDAIGSVANYFKAHGWVKGDQVAVMA----NGQAPGLPNGFK 287
            YAVDF GDGHIN+W DP DAIGSVA+YFK HGWV G+ V  +A          +  G  
Sbjct: 172 AYAVDFDGDGHINIWSDPTDAIGSVASYFKQHGWVTGEPVVSVAEINDESAESAVTRGVD 231

Query: 288 TKYSISQLAAAGLTPQQPLGNHQQASLLRLDVGTGYQYWYGLPNFYTITRYNHSTHYAMA 347
              S+ +L A G      L + Q+ + +R     G +YW GLPNFY ITRYN S  YAMA
Sbjct: 232 PTMSLGELRARGWRTHDALRDDQKVTAMRFVGDKGIEYWVGLPNFYVITRYNRSAMYAMA 291

Query: 348 VWQLGQAVALAR 359
           V+QL   +A AR
Sbjct: 292 VYQLAGEIARAR 303


>5ANZ-A nrPDB
          Length = 420

 Score =  114 bits (285), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 86/253 (33%), Positives = 125/253 (49%), Gaps = 34/253 (13%)

Query: 116 RYRKKFITPDNVQNGVVFWNQYEDALNRAWQVYGVPPEIIVGIIGVETRWGRVMGKTRIL 175
           +Y +  + P  V+ G     Q+   L      Y V  + +V I G+E+ +G  MG   ++
Sbjct: 98  KYLEGALDPLRVRQGQARLAQHARILGEVDARYAVDADAVVAIWGMESNYGSHMGNKNVI 157

Query: 176 DALATLSFNYPRRAEYFSGELETFLLMARDEQDDPLNLKGSFAGAMGYGQFMPSSYKQYA 235
            +LATL++   RR E+   +L   L + +        + GS+AGAMG  QF+P+++ QYA
Sbjct: 158 RSLATLAYEG-RRPEFAHAQLLAALKILQHGDVPASFMIGSWAGAMGQTQFIPTTHNQYA 216

Query: 236 VDFSGDGHINLW-DPVDAIGSVANYFKAHGWVKGDQVAVMANGQAPGLPNGFKTKYSISQ 294
           VDF GDG  ++W  P DA+ S ANY KA GW+ G             LP GF   YS+++
Sbjct: 217 VDFDGDGKRDIWGSPGDALASTANYLKASGWIAGQPWGFEVR-----LPAGF--DYSLAE 269

Query: 295 LAAAGLTPQQPLGNHQ-------------------QASLLRLDVGTGYQYWYGLPNFYTI 335
                LT ++PLG  Q                   QASLL L  G     +  L NF  I
Sbjct: 270 -----LTIRKPLGEWQGMGVQGVNGGPLPSGLSGEQASLL-LPAGHRGPAFLVLHNFRAI 323

Query: 336 TRYNHSTHYAMAV 348
            +YN+S+ YA+AV
Sbjct: 324 LKYNNSSAYALAV 336


>3MGW-A nrPDB
          Length = 181

 Score = 34.7 bits (78), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 26/42 (61%)

Query: 128 QNGVVFWNQYEDALNRAWQVYGVPPEIIVGIIGVETRWGRVM 169
           ++ +V  N+Y++ + R  Q +G+ P II GII  E+R G  +
Sbjct: 35  EHDLVRMNKYKELITRVGQKHGLDPAIIAGIISRESRAGSAL 76


>3W77-A nrPDB
          Length = 208

 Score = 31.6 bits (70), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 8/53 (15%)

Query: 116 RYRKKFITPDNVQNGVVFWN--------QYEDALNRAWQVYGVPPEIIVGIIG 160
           +Y  +F+  D V  G   WN         Y D LNRA + +   PE  VG+IG
Sbjct: 82  KYLNQFLEADKVVFGFPLWNLTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIG 134


>4JGA-A nrPDB
          Length = 437

 Score = 31.6 bits (70), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 9/53 (16%)

Query: 97  NQAPTTSVKPPSGPNGAWLRYRKKFITPDNVQNGVVFWNQYEDALNRAWQVYG 149
           N  P  + +P       W + R  F+  +    GVV   +YE ALNR  +VYG
Sbjct: 235 NDNPKKASRP-------WDKDRSGFVMGEGA--GVVVLEEYEHALNRGAKVYG 278


>5T5H-f nrPDB
          Length = 397

 Score = 30.4 bits (67), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 5/37 (13%)

Query: 326 WYGLPNFYTITR-----YNHSTHYAMAVWQLGQAVAL 357
           W+     YT+ R     Y+H TH    ++QLG+AV++
Sbjct: 254 WHPARVMYTVARAGQHGYHHRTHLNKKIYQLGRAVSM 290


>5OES-A nrPDB
          Length = 483

 Score = 29.3 bits (64), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 135 NQYEDALNRAWQVYGVPPEIIVGIIGVETR 164
           NQ+ +AL +AW  YG P  +I+  +  E R
Sbjct: 197 NQFAEALAKAWNEYGDPRAVIMFAVQAEER 226


>4TVY-A nrPDB
          Length = 341

 Score = 28.5 bits (62), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 307 GNHQQASLLRLDVGTGYQYWYGLPNFYTITRYNHSTHYAMAVWQLGQAVALARVQ 361
           G+H   S LRL +   Y  W+ L     I R   +T   + +W+    V + R Q
Sbjct: 1   GSHM--STLRLLISDSYDPWFNLAVAECIFRQMPATQRVLFLWRNADTVVIGRAQ 53


>3NJT-A nrPDB
          Length = 566

 Score = 28.1 bits (61), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 8/21 (38%), Positives = 15/21 (71%)

Query: 150 VPPEIIVGIIGVETRWGRVMG 170
           VPP ++ G++ ++  WGR+ G
Sbjct: 130 VPPGVVDGVLKLKVEWGRIKG 150


>2VYN-D nrPDB
          Length = 334

 Score = 27.3 bits (59), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 214 KGSFAGAMGYGQFMPSSYKQYAVDFSGDGHINLWDPVDAIGSVANYFKAHGW 265
           KG  AG + Y     +  +  + DF+GD H +++D    I    N+ K   W
Sbjct: 265 KGPMAGILAY-----TEDQVVSTDFNGDSHSSIFDAKAGIALNDNFVKLVSW 311


>4Q86-A nrPDB
          Length = 586

 Score = 27.3 bits (59), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%)

Query: 180 TLSFNY----PRRAEYFSGELETFLLMARDEQDDPLNLKGSFAGAMG 222
           T+ FN     P RA Y+   L+T LL+A++E   PL    +F    G
Sbjct: 488 TMEFNSSVFSPERANYYRC-LQTLLLLAQEEDRQPLQYLNAFVRMYG 533


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

1D0M-A nrPDB                                                          577   e-165
5O8X-A nrPDB                                                          464   e-131
5ANZ-A nrPDB                                                          298   2e-81

Sequences not found previously or not previously below threshold:

3MGW-A nrPDB                                                           36   0.023
6FXP-A nrPDB                                                           36   0.028
5OES-A nrPDB                                                           34   0.084
4LH8-A nrPDB                                                           32   0.40 
3CUK-A nrPDB                                                           32   0.44 
4TXA-A nrPDB                                                           30   1.3  
4QIL-A nrPDB                                                           30   1.3  
4I9T-A nrPDB                                                           30   1.3  
3W77-A nrPDB                                                           30   1.3  
3D7W-B nrPDB                                                           29   3.1  
3GXK-A nrPDB                                                           29   3.4  
2VDI-A nrPDB                                                           29   3.4  
4UCF-A nrPDB                                                           29   3.6  
3IYS-A nrPDB                                                           29   4.0  
5DXV-A nrPDB                                                           29   4.4  
1YC9-A nrPDB                                                           28   6.3  
5U2O-A nrPDB                                                           28   6.5  
1KWK-A nrPDB                                                           27   9.3  


CONVERGED!
>1D0M-A nrPDB
          Length = 322

 Score =  577 bits (1487), Expect = e-165,   Method: Composition-based stats.
 Identities = 320/322 (99%), Positives = 322/322 (100%)

Query: 40  LLEPQHNVMQMGGDFANNPNAQQFIDKMVNKHGFDRQQLQEILSQAKRLDSVLRLMDNQA 99
           ++EPQHNVMQMGGDFANNPNAQQFIDKMVNKHGFDRQQLQEILSQAKRLDSVLRLMDNQA
Sbjct: 1   MVEPQHNVMQMGGDFANNPNAQQFIDKMVNKHGFDRQQLQEILSQAKRLDSVLRLMDNQA 60

Query: 100 PTTSVKPPSGPNGAWLRYRKKFITPDNVQNGVVFWNQYEDALNRAWQVYGVPPEIIVGII 159
           PTTSVKPPSGPNGAWLRYRKKFITPDNVQNGVVFWNQYEDALNRAWQVYGVPPEIIVGII
Sbjct: 61  PTTSVKPPSGPNGAWLRYRKKFITPDNVQNGVVFWNQYEDALNRAWQVYGVPPEIIVGII 120

Query: 160 GVETRWGRVMGKTRILDALATLSFNYPRRAEYFSGELETFLLMARDEQDDPLNLKGSFAG 219
           GVETRWGRVMGKTRILDALATLSFNYPRRAEYFSGELETFLLMARDEQDDPLNLKGSFAG
Sbjct: 121 GVETRWGRVMGKTRILDALATLSFNYPRRAEYFSGELETFLLMARDEQDDPLNLKGSFAG 180

Query: 220 AMGYGQFMPSSYKQYAVDFSGDGHINLWDPVDAIGSVANYFKAHGWVKGDQVAVMANGQA 279
           AMGYGQFMPSSYKQYAVDFSGDGHINLWDPVDAIGSVANYFKAHGWVKGDQVAVMANGQA
Sbjct: 181 AMGYGQFMPSSYKQYAVDFSGDGHINLWDPVDAIGSVANYFKAHGWVKGDQVAVMANGQA 240

Query: 280 PGLPNGFKTKYSISQLAAAGLTPQQPLGNHQQASLLRLDVGTGYQYWYGLPNFYTITRYN 339
           PGLPNGFKTKYSISQLAAAGLTPQQPLGNHQQASLLRLDVGTGYQYWYGLPNFYTITRYN
Sbjct: 241 PGLPNGFKTKYSISQLAAAGLTPQQPLGNHQQASLLRLDVGTGYQYWYGLPNFYTITRYN 300

Query: 340 HSTHYAMAVWQLGQAVALARVQ 361
           HSTHYAMAVWQLGQAVALARVQ
Sbjct: 301 HSTHYAMAVWQLGQAVALARVQ 322


>5O8X-A nrPDB
          Length = 306

 Score =  464 bits (1194), Expect = e-131,   Method: Composition-based stats.
 Identities = 145/312 (46%), Positives = 189/312 (60%), Gaps = 14/312 (4%)

Query: 53  DFANNPNAQQFIDKMVNKHGFDRQQLQEILSQAKRLDSVLRLMDNQAPTTSVKPPSGPNG 112
           D+  +P   +F+ +M   +GF  +QL  +     R  S+L  +    P   VK       
Sbjct: 1   DYDGSPQVAEFVSEMTRDYGFAGEQLMGLFRDVNRKQSILDAISR--PAERVK------- 51

Query: 113 AWLRYRKKFITPDNVQNGVVFWNQYEDALNRAWQVYGVPPEIIVGIIGVETRWGRVMGKT 172
            W  YR  FI+   +  GV FWN++ + L RA + YGVP EIIV IIGVET +GR  G  
Sbjct: 52  QWKEYRPIFISDARISRGVDFWNKHAEDLARAEKEYGVPAEIIVSIIGVETFFGRNTGSY 111

Query: 173 RILDALATLSFNYPRRAEYFSGELETFLLMARDEQDDPLNLKGSFAGAMGYGQFMPSSYK 232
           R++DAL+TL F+YP RA++F  EL  FLL+AR++Q DPL+L GS+AGAMG  QFMPSS++
Sbjct: 112 RVMDALSTLGFDYPPRADFFRKELREFLLLAREQQVDPLSLTGSYAGAMGLPQFMPSSFR 171

Query: 233 QYAVDFSGDGHINLW-DPVDAIGSVANYFKAHGWVKGDQVAVMA----NGQAPGLPNGFK 287
            YAVDF GDGHIN+W DP DAIGSVA+YFK HGWV G+ V  +A          +  G  
Sbjct: 172 AYAVDFDGDGHINIWSDPTDAIGSVASYFKQHGWVTGEPVVSVAEINDESAESAVTRGVD 231

Query: 288 TKYSISQLAAAGLTPQQPLGNHQQASLLRLDVGTGYQYWYGLPNFYTITRYNHSTHYAMA 347
              S+ +L A G      L + Q+ + +R     G +YW GLPNFY ITRYN S  YAMA
Sbjct: 232 PTMSLGELRARGWRTHDALRDDQKVTAMRFVGDKGIEYWVGLPNFYVITRYNRSAMYAMA 291

Query: 348 VWQLGQAVALAR 359
           V+QL   +A AR
Sbjct: 292 VYQLAGEIARAR 303


>5ANZ-A nrPDB
          Length = 420

 Score =  298 bits (764), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 95/309 (30%), Positives = 136/309 (44%), Gaps = 52/309 (16%)

Query: 64  IDKMVNKHGFDRQQLQEILSQAKRLDSVLRLMDNQAPTTSVKPPSGPNGAWLRYRKKFIT 123
           ID       F   Q    + +A R                   P      W +Y +  + 
Sbjct: 64  IDAQTFDRAFAGVQPDPAVVEADRSQ-----------------PEFTRPVW-KYLEGALD 105

Query: 124 PDNVQNGVVFWNQYEDALNRAWQVYGVPPEIIVGIIGVETRWGRVMGKTRILDALATLSF 183
           P  V+ G     Q+   L      Y V  + +V I G+E+ +G  MG   ++ +LATL++
Sbjct: 106 PLRVRQGQARLAQHARILGEVDARYAVDADAVVAIWGMESNYGSHMGNKNVIRSLATLAY 165

Query: 184 NYPRRAEYFSGELETFLLMARDEQDDPLNLKGSFAGAMGYGQFMPSSYKQYAVDFSGDGH 243
              RR E+   +L   L + +        + GS+AGAMG  QF+P+++ QYAVDF GDG 
Sbjct: 166 EG-RRPEFAHAQLLAALKILQHGDVPASFMIGSWAGAMGQTQFIPTTHNQYAVDFDGDGK 224

Query: 244 INLW-DPVDAIGSVANYFKAHGWVKGDQVAVMANGQAPGLPNGFKTKYSISQLAAAGLTP 302
            ++W  P DA+ S ANY KA GW+ G             LP GF   YS+++     LT 
Sbjct: 225 RDIWGSPGDALASTANYLKASGWIAGQPWGFEVR-----LPAGF--DYSLAE-----LTI 272

Query: 303 QQPLGNHQ-------------------QASLLRLDVGTGYQYWYGLPNFYTITRYNHSTH 343
           ++PLG  Q                   QASLL L  G     +  L NF  I +YN+S+ 
Sbjct: 273 RKPLGEWQGMGVQGVNGGPLPSGLSGEQASLL-LPAGHRGPAFLVLHNFRAILKYNNSSA 331

Query: 344 YAMAVWQLG 352
           YA+AV  L 
Sbjct: 332 YALAVGLLA 340


>3MGW-A nrPDB
          Length = 181

 Score = 36.2 bits (82), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 131 VVFWNQYEDALNRAWQVYGVPPEIIVGIIGVETRWGRVM 169
           +V  N+Y++ + R  Q +G+ P II GII  E+R G  +
Sbjct: 38  LVRMNKYKELITRVGQKHGLDPAIIAGIISRESRAGSAL 76


>6FXP-A nrPDB
          Length = 254

 Score = 35.9 bits (81), Expect = 0.028,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 12/119 (10%)

Query: 199 FLLMARDEQDDPLNLKGSFAGAMGYGQFMPSSYKQYAVDFSGDGHINLWDPV----DAIG 254
           FL  A+D+  + + L        G  +    S     V+  G  + N +       D I 
Sbjct: 104 FLKAAKDKHVNEVYLISHALLETGAVK----SELANGVEIDGKKYYNFYGVGALDKDPIK 159

Query: 255 SVANYFKAHGWVKGDQVAVMANGQAPGLPNGFKTKYSISQLAAAGLTPQQPLGNHQQAS 313
           + A Y K HGW   ++      G A  +   F +    + L +    P+ P G HQ A+
Sbjct: 160 TGAEYAKKHGWDTPEKAIS---GGADFIHKHFLSSTDQNTLYSMRWNPKNP-GEHQYAT 214


>5OES-A nrPDB
          Length = 483

 Score = 34.3 bits (77), Expect = 0.084,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 2/78 (2%)

Query: 88  LDSVLRLMDNQAPTTSVKPPSGPNGAWLRYRK-KFITPDNVQNGVVFWNQYEDALNRAWQ 146
           L   L  + +  P  S            +YR+     P+ +       NQ+ +AL +AW 
Sbjct: 150 LQIELNTISSSFPGLSCLVSELHRSLLQQYREDIASDPNRIPANNA-VNQFAEALAKAWN 208

Query: 147 VYGVPPEIIVGIIGVETR 164
            YG P  +I+  +  E R
Sbjct: 209 EYGDPRAVIMFAVQAEER 226


>4LH8-A nrPDB
          Length = 469

 Score = 32.0 bits (71), Expect = 0.40,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 39/112 (34%), Gaps = 11/112 (9%)

Query: 201 LMARDEQDDPLNLKGSFAGAMGYGQFMPS---SYKQYAVDFSGDGHINLWDPVDAIGSVA 257
           L+ +  + +P  +     G  G     P    ++ Q A D+    H + ++P+DA  S  
Sbjct: 204 LIDQYHEPEPFGMVRIALGPCGVPYDKPELFEAFAQMAADYDVRLHTHFYEPLDAGMSDH 263

Query: 258 NY-------FKAHGWVKGDQV-AVMANGQAPGLPNGFKTKYSISQLAAAGLT 301
            Y        + HGW       A         +P       +I+ L A  L 
Sbjct: 264 LYGMTPWRFLEKHGWASDRVWLAHAVVPPREEIPEFADAGVAIAHLIAPDLR 315


>3CUK-A nrPDB
          Length = 347

 Score = 32.0 bits (71), Expect = 0.44,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 8/49 (16%)

Query: 187 RRAEYFSGELETFLLMARDEQDDPLNLKGSFAGAM--------GYGQFM 227
           R  ++F  ++E+F  +AR+  D  +N  G +AGA+        G GQ M
Sbjct: 155 RGVKFFQRKVESFEEVAREGADVIVNCTGVWAGALQRDPLLQPGRGQIM 203


>4TXA-A nrPDB
          Length = 484

 Score = 30.5 bits (67), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 16/113 (14%)

Query: 37  GGFLLEPQHNVMQMGGDFANNPNAQQFIDKMVNKHGFDRQQLQEIL---------SQAKR 87
            G  + P      + GD ++  + Q  IDK+     F  Q +QE+          +   R
Sbjct: 294 AGLRIAPDQWSSLLYGDQSHKSHMQSIIDKLQTPASFA-QSVQELTIALQRTGDPANLNR 352

Query: 88  LDSVLRLMDNQAPTTSVKPPSGPNGAWLRYRKKFITPDNVQNG-VVFWNQYED 139
           L   L L+ N  P+     P  P   W +     +    V +G V +   +  
Sbjct: 353 LRPHLELLANIDPS-----PDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSK 400


>4QIL-A nrPDB
          Length = 330

 Score = 30.5 bits (67), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 16/113 (14%)

Query: 37  GGFLLEPQHNVMQMGGDFANNPNAQQFIDKMVNKHGFDRQQLQEIL---------SQAKR 87
            G  + P      + GD ++  + Q  IDK+     F  Q +QE+          +   R
Sbjct: 209 AGLRIAPDQWSSLLYGDQSHKSHMQSIIDKLQTPASFA-QSVQELTIALQRTGDPANLNR 267

Query: 88  LDSVLRLMDNQAPTTSVKPPSGPNGAWLRYRKKFITPDNVQNG-VVFWNQYED 139
           L   L L+ N  P+     P  P   W +     +    V +G V +   +  
Sbjct: 268 LRPHLELLANIDPS-----PDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSK 315


>4I9T-A nrPDB
          Length = 310

 Score = 30.5 bits (67), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 47  VMQMGGDFANNPNAQQFIDKMVNKHGFDRQQLQEILSQAKRLDSVLR------LMDNQAP 100
           VM M  D+ ++    +  +++  ++ ++  Q Q +       +  L+      ++ N+  
Sbjct: 109 VMSMKKDYDSDSKVTKTFEEIFREYYYNNPQYQNLFYTGSNANPTLKETKGKIVLFNRMG 168

Query: 101 TTSVKPPSGPNGAWLRYRKKFITPDNVQNG 130
            T +K   G + + +++         + NG
Sbjct: 169 GTYIKSGYGADTSGIQWADNATFETKINNG 198


>3W77-A nrPDB
          Length = 208

 Score = 30.5 bits (67), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 8/53 (15%)

Query: 116 RYRKKFITPDNVQNGVVFWN--------QYEDALNRAWQVYGVPPEIIVGIIG 160
           +Y  +F+  D V  G   WN         Y D LNRA + +   PE  VG+IG
Sbjct: 82  KYLNQFLEADKVVFGFPLWNLTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIG 134


>3D7W-B nrPDB
          Length = 265

 Score = 28.9 bits (63), Expect = 3.1,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 19/61 (31%)

Query: 251 DAIGSVANYFKAHGWVKGDQVAVMANGQAPGLPNGFKTKYSISQLAAAGLTPQQPLGNHQ 310
           D+I +V N         G +      G    L NG     + +  +   +      GN  
Sbjct: 197 DSISTVINIVSCSAGSSGQRWVFTNEGAILNLKNGLAMDVAQANPSLQRIIIYPATGNPN 256

Query: 311 Q 311
           Q
Sbjct: 257 Q 257


>3GXK-A nrPDB
          Length = 187

 Score = 28.9 bits (63), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 24/58 (41%)

Query: 115 LRYRKKFITPDNVQNGVVFWNQYEDALNRAWQVYGVPPEIIVGIIGVETRWGRVMGKT 172
           L Y     +    Q       +Y+  +N   + + V P +I  II  E+R G V+  T
Sbjct: 24  LEYDGVRASHTMAQTDAGRMEKYKSFINNVAKKHVVDPAVIAAIISRESRAGNVIFNT 81


>2VDI-A nrPDB
          Length = 475

 Score = 28.9 bits (63), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 23/67 (34%), Gaps = 5/67 (7%)

Query: 100 PTTSVKPPSGPNGAWLRYRKKFITPDNVQNGVVFWNQYEDALNRAWQVYGVPPEIIVGII 159
           P T  K  +G       YR  + TPD V         +     R     GVPPE     +
Sbjct: 3   PQTETKAGAGFKAGVKDYRLTYYTPDYVVRDTDILAAF-----RMTPQPGVPPEECGAAV 57

Query: 160 GVETRWG 166
             E+  G
Sbjct: 58  AAESSTG 64


>4UCF-A nrPDB
          Length = 689

 Score = 28.9 bits (63), Expect = 3.6,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 54/170 (31%), Gaps = 26/170 (15%)

Query: 113 AWLRYRKKFITPDNVQNGVVFWNQYEDALNRAWQVYGVPPEIIVGIIGVETRWGRVMGKT 172
            W + R K I   N   G  FW Q+ +  +       +PP              R +G  
Sbjct: 180 KWCKKRYKTIDAVNEAWGTAFWAQHMNDFSEI-----IPP--------------RYIGDG 220

Query: 173 RILDALATLSFNYPRRAEYFSGELETFLLMARDEQDDPLNLKGSFAGAMGYGQFMPSSYK 232
             ++    L  +Y R +     EL        +     L L  +F  + G G  +     
Sbjct: 221 NFMNPGKLL--DYKRFSSDALKELYIAERDVLESITPGLPLTTNFMVSAG-GSMLDYDDW 277

Query: 233 QYAVDFSGDGHINLWDPVDAIGSVANYFKA--HGWVKGDQVAVMANGQAP 280
              VDF  + H   + P +A      Y  +   G  + +    M +  + 
Sbjct: 278 GAEVDFVSNDH--YFTPGEAHFDEVAYAASLMDGISRKEPWFQMEHSTSA 325


>3IYS-A nrPDB
          Length = 343

 Score = 28.5 bits (62), Expect = 4.0,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 57/195 (29%), Gaps = 17/195 (8%)

Query: 145 WQVYGVPPEIIVGIIGVETRWGRVMGKTRILDALATLSFNYPRRAEYFS---GELETFLL 201
           W+   V  E++    GV +      G  R  +           R  +FS     L+    
Sbjct: 98  WEAVSVKTEVV----GVSSILNMHSGAFRAFNGYGGGFTICGPRIHFFSVGGEPLDLQAC 153

Query: 202 MARDEQDDPLNLKGSFAGAMGYG-QFMPSSYKQYAVDFSGDGHINLWDPVDAIGSVANYF 260
           M   +   P  L G   G      Q + + YK   +D  G   I  W P  A      Y+
Sbjct: 154 MQNSKTVYPAPLIGPGEGERRETAQVLDTGYKA-RLDKDGLYPIECWCPDPAKNENTRYY 212

Query: 261 KAHGWVKGDQVAVMANGQAPGLPNGFKTKYSISQLAAAGLTPQQPLGNHQQASLLRLDVG 320
              G + G                   T   + +     L     L              
Sbjct: 213 ---GNLTGGP-----ETPPVLAFTNTTTTILLDENGVGPLCKGDGLFLSAADVAGTYVDQ 264

Query: 321 TGYQYWYGLPNFYTI 335
            G QYW GLP +++I
Sbjct: 265 RGRQYWRGLPRYFSI 279


>5DXV-A nrPDB
          Length = 156

 Score = 28.5 bits (62), Expect = 4.4,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 3/42 (7%)

Query: 202 MARDEQDDPLNLKGSFAGAMGYGQFMPSSYKQYAVDFSGDGH 243
           +A       + + G   G   Y QF+P + K Y      +GH
Sbjct: 100 IAACGDVPEIMVIG---GGRVYEQFLPKAQKLYLTHIDAEGH 138


>1YC9-A nrPDB
          Length = 442

 Score = 28.2 bits (61), Expect = 6.3,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 58/156 (37%), Gaps = 8/156 (5%)

Query: 75  RQQLQEIL--SQAKRLDSVLRLMDNQAPTTSVKPPSGPNGAWLRYRKKFITPDNVQNGVV 132
           R +  E+L    A  L+++  +   +A   SV+         ++ +K  +    V  G  
Sbjct: 171 RNKTVELLEKRYANGLETLGSVSQAKAVAASVEAELLGIQESIQLQKNALAAL-VGQGPD 229

Query: 133 FWNQYEDALNRAWQVYGVPPEIIVGIIGVETRWGRVMGKTRILDALATLSFNYPRRAEYF 192
                E+        YG+P E  VG++G          +         ++     +A+++
Sbjct: 230 RAASIEEPHITLTSRYGLPSEAGVGLLGHRADITAARWRAEAAAQQVGIA-----QAQFY 284

Query: 193 SGELETFLLMARDEQDDPLNLKGSFAGAMGYGQFMP 228
                +  +  +    D L   G+ AGA+G   ++P
Sbjct: 285 PDVTLSAFIGYQAFGLDHLFDSGNDAGAIGPAIYLP 320


>5U2O-A nrPDB
          Length = 576

 Score = 28.2 bits (61), Expect = 6.5,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 22/45 (48%), Gaps = 3/45 (6%)

Query: 188 RAEYFSGELETFLLMAR---DEQDDPLNLKGSFAGAMGYGQFMPS 229
           R +    + +  +L        Q DP+++ G +  A  YG+++P+
Sbjct: 110 RHDVCHAQDKQAMLFFEDPFHRQGDPIDVSGGWHDAGDYGKYVPT 154


>1KWK-A nrPDB
          Length = 645

 Score = 27.4 bits (59), Expect = 9.3,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 11/32 (34%)

Query: 114 WLRYRKKFITPDNVQNGVVFWNQYEDALNRAW 145
           WL  R   I   N   G  FW+Q   +     
Sbjct: 162 WLEARYGTIEALNEAWGTAFWSQRYRSFAEVE 193


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.309    0.130    0.359 

Lambda     K      H
   0.267   0.0396    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,383,290
Number of Sequences: 36641
Number of extensions: 594185
Number of successful extensions: 1632
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1599
Number of HSP's gapped (non-prelim): 40
length of query: 361
length of database: 10,336,785
effective HSP length: 98
effective length of query: 263
effective length of database: 6,745,967
effective search space: 1774189321
effective search space used: 1774189321
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 60 (27.8 bits)