BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= P40509
         (296 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3MV2-B nrPDB                                                          596   e-171
5A1Y-X nrPDB                                                           42   3e-04
3MKR-A nrPDB                                                           42   3e-04
1N8P-A nrPDB                                                           30   1.4  
5TF0-A nrPDB                                                           30   1.8  
4QN7-A nrPDB                                                           29   2.3  
5F06-A nrPDB                                                           28   4.2  
6G2J-E nrPDB                                                           28   6.3  

>3MV2-B nrPDB
          Length = 310

 Score =  596 bits (1536), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 296/296 (100%), Positives = 296/296 (100%)

Query: 1   MDYFNIKQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQDPTSKLGKVL 60
           MDYFNIKQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQDPTSKLGKVL
Sbjct: 15  MDYFNIKQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQDPTSKLGKVL 74

Query: 61  DLYVQFLDTKNIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEG 120
           DLYVQFLDTKNIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEG
Sbjct: 75  DLYVQFLDTKNIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEG 134

Query: 121 TTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETA 180
           TTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETA
Sbjct: 135 TTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETA 194

Query: 181 TSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYK 240
           TSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYK
Sbjct: 195 TSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYK 254

Query: 241 PTFLANQITLALMQGLDTEDLTNQLVKLDHEHAFIKHHQEIDAKFDELVRKYDTSN 296
           PTFLANQITLALMQGLDTEDLTNQLVKLDHEHAFIKHHQEIDAKFDELVRKYDTSN
Sbjct: 255 PTFLANQITLALMQGLDTEDLTNQLVKLDHEHAFIKHHQEIDAKFDELVRKYDTSN 310


>5A1Y-X nrPDB
          Length = 308

 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 71/323 (21%), Positives = 124/323 (38%), Gaps = 66/323 (20%)

Query: 4   FNIKQNYYTGNFVQCLQEIEKFS-----KVTDNTLLFYKAKTLLALGQYQSQDPTSKLGK 58
           F++K  +Y G++ QC+ E ++       +  +  +  Y+A        Y +Q    K G 
Sbjct: 20  FDVKNAFYIGSYQQCINEAQRVKLSSPEREVERDVFLYRA--------YLAQ---RKYGV 68

Query: 59  VLD--------------LYVQFLDTKN-----IEELENLLKDKQNSPYELYLLATAQAIL 99
           VLD              ++ ++L ++N     + EL+  +    +     +LL  A    
Sbjct: 69  VLDEIKPSSAPELQAVRMFAEYLASENQRDSIVLELDREMSRSVDVTNTTFLLMAASIYF 128

Query: 100 GD--LDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVS 157
            D   D +L T  +G          E + + I++ L  + +  A        +  ED   
Sbjct: 129 HDQNPDAALRTLHQG-------DGLECMAMTIQILLKLDRLDLARKELKKMQDQDEDAT- 180

Query: 158 GDNEMILNLAESYIKFATNKETATSNFYYYEELS-QTFPTWKTQLGLLNLHLQQRNIAEA 216
                +  LA +++  A   E     +Y ++EL+ +  PT     G    H  Q     A
Sbjct: 181 -----LTQLATAWVNLAVGGEKLQEAYYIFQELADKCSPTLLLLNGQAACHSAQGRWETA 235

Query: 217 QGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGLDTEDLTN----QLVKLDHEH 272
           +G+++  L        K++     P  L N I L+   G   E +TN    QL      H
Sbjct: 236 EGVLQEALD-------KDSG---HPETLINLIVLSQHLGKPPE-VTNRYLSQLKDAHRAH 284

Query: 273 AFIKHHQEIDAKFDELVRKYDTS 295
            FIK +Q  +  FD L  +Y  S
Sbjct: 285 PFIKEYQAKENDFDRLAMQYAPS 307


>3MKR-A nrPDB
          Length = 291

 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 67/323 (20%), Positives = 126/323 (39%), Gaps = 66/323 (20%)

Query: 4   FNIKQNYYTGNFVQCLQEIEKFSKVT-----DNTLLFYKAKTLLALGQYQSQDPTSKLGK 58
           F++K  +Y G++ QC+ E ++    +     +  +  Y+A        Y +Q    K G 
Sbjct: 4   FDVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRA--------YLAQ---RKYGV 52

Query: 59  VLD--------------LYVQFLDTKN-----IEELENLLKDKQNSPYELYLLATAQAIL 99
           VLD              ++ ++L + +     + EL+  +    +     +LL  A    
Sbjct: 53  VLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYF 112

Query: 100 GD--LDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVS 157
            D   D +L T  +G        + E + + +++ L  + +  A        +  ED   
Sbjct: 113 YDQNPDAALRTLHQG-------DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT- 164

Query: 158 GDNEMILNLAESYIKFATNKETATSNFYYYEELS-QTFPTWKTQLGLLNLHLQQRNIAEA 216
                +  LA +++  A   E     +Y ++E++ +  PT     G    H+ Q     A
Sbjct: 165 -----LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAA 219

Query: 217 QGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGLDTEDLTN----QLVKLDHEH 272
           +G+++  L        K++     P  L N + L+   G   E +TN    QL      H
Sbjct: 220 EGVLQEALD-------KDSG---HPETLINLVVLSQHLGKPPE-VTNRYLSQLKDAHRSH 268

Query: 273 AFIKHHQEIDAKFDELVRKYDTS 295
            FIK ++  +  FD LV +Y  S
Sbjct: 269 PFIKEYRAKENDFDRLVLQYAPS 291


>1N8P-A nrPDB
          Length = 393

 Score = 29.6 bits (65), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 17/69 (24%)

Query: 180 ATSNFYYYEEL----------SQTFPTWKTQLGLLNLHLQQRNIA-EAQGIVELLLSDYY 228
           AT+N   YE L             F  W T  GL  LHL+ R  A  A  I E L +D  
Sbjct: 217 ATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAAD-- 274

Query: 229 SVEQKENAV 237
               KEN V
Sbjct: 275 ----KENVV 279


>5TF0-A nrPDB
          Length = 751

 Score = 29.6 bits (65), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 243 FLANQITLALMQGLDTEDLTNQLVKLDHEHAFIKHHQEIDAKFDELVRKYDT 294
           FL   I  A++ G    DL NQL + D   A +KH     A   E  R Y+T
Sbjct: 158 FLGGAIAKAMVSGYQGIDLNNQLKRNDEIMACVKHFALYGA--GEAGRDYNT 207


>4QN7-A nrPDB
          Length = 390

 Score = 29.3 bits (64), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 176 NKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKEN 235
           N + AT+  YY   L+ T  TW   +    L  Q+       G   ++++D  +  Q   
Sbjct: 116 NNDNATATVYYDRRLTTTIKTWAGNI----LRTQESECVCHNGTCVVIMTDGSASSQAYT 171

Query: 236 AVLY 239
            VLY
Sbjct: 172 KVLY 175


>5F06-A nrPDB
          Length = 216

 Score = 28.1 bits (61), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 51  DPTSKLGKVLDLY-VQFLDTKNIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETC 109
           D   KLGKVLD+Y  +   TK +      L D  + PY  YL+ T  A + +    ++  
Sbjct: 135 DNVEKLGKVLDIYEAKLSSTKYLAGDFYSLADLHHLPYTYYLMKTPAASVVNERPHVKAW 194

Query: 110 VEGIDNDEA 118
            E I +  A
Sbjct: 195 WEDISSRPA 203


>6G2J-E nrPDB
          Length = 248

 Score = 27.7 bits (60), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 45/116 (38%), Gaps = 5/116 (4%)

Query: 52  PTSKLGKVLD-LYVQFLDTKNIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCV 110
           P S + KV + L V  +    +     +   K    Y + +  T   +L D D  LET  
Sbjct: 93  PISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRDSDSILETLQ 152

Query: 111 EGIDNDEAEGTTELLLLAIEVALLNNNVSTAST-IFDNYTNAIEDTVSGDNEMILN 165
             +     E T + L   IEV  L   V+     I DNY    ED    D E I++
Sbjct: 153 RKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNY---YEDLTPKDIEEIID 205


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

3MV2-B nrPDB                                                          402   e-113
5A1Y-X nrPDB                                                          332   1e-91
3MKR-A nrPDB                                                          327   4e-90

Sequences not found previously or not previously below threshold:

5OJF-A nrPDB                                                           31   0.96 
3ZFW-A nrPDB                                                           30   1.3  
5F06-A nrPDB                                                           30   1.4  
3NF1-A nrPDB                                                           29   2.0  
2VS1-A nrPDB                                                           29   2.2  
2X0S-A nrPDB                                                           29   2.3  
5OJ8-A nrPDB                                                           29   2.8  
6FUZ-A nrPDB                                                           28   4.2  
1DOT-A nrPDB                                                           28   6.0  
5L3R-A nrPDB                                                           27   6.6  
5LVV-A nrPDB                                                           27   7.7  
5O09-1C nrPDB                                                          27   9.5  


CONVERGED!
>3MV2-B nrPDB
          Length = 310

 Score =  402 bits (1033), Expect = e-113,   Method: Composition-based stats.
 Identities = 296/296 (100%), Positives = 296/296 (100%)

Query: 1   MDYFNIKQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQDPTSKLGKVL 60
           MDYFNIKQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQDPTSKLGKVL
Sbjct: 15  MDYFNIKQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQDPTSKLGKVL 74

Query: 61  DLYVQFLDTKNIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEG 120
           DLYVQFLDTKNIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEG
Sbjct: 75  DLYVQFLDTKNIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEG 134

Query: 121 TTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETA 180
           TTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETA
Sbjct: 135 TTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETA 194

Query: 181 TSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYK 240
           TSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYK
Sbjct: 195 TSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYK 254

Query: 241 PTFLANQITLALMQGLDTEDLTNQLVKLDHEHAFIKHHQEIDAKFDELVRKYDTSN 296
           PTFLANQITLALMQGLDTEDLTNQLVKLDHEHAFIKHHQEIDAKFDELVRKYDTSN
Sbjct: 255 PTFLANQITLALMQGLDTEDLTNQLVKLDHEHAFIKHHQEIDAKFDELVRKYDTSN 310


>5A1Y-X nrPDB
          Length = 308

 Score =  332 bits (850), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 71/325 (21%), Positives = 125/325 (38%), Gaps = 66/325 (20%)

Query: 2   DYFNIKQNYYTGNFVQCLQEIEKFS-----KVTDNTLLFYKAKTLLALGQYQSQDPTSKL 56
           + F++K  +Y G++ QC+ E ++       +  +  +  Y+A        Y +Q    K 
Sbjct: 18  ELFDVKNAFYIGSYQQCINEAQRVKLSSPEREVERDVFLYRA--------YLAQ---RKY 66

Query: 57  GKVLD--------------LYVQFLDTKN-----IEELENLLKDKQNSPYELYLLATAQA 97
           G VLD              ++ ++L ++N     + EL+  +    +     +LL  A  
Sbjct: 67  GVVLDEIKPSSAPELQAVRMFAEYLASENQRDSIVLELDREMSRSVDVTNTTFLLMAASI 126

Query: 98  ILGD--LDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDT 155
              D   D +L T  +G          E + + I++ L  + +  A        +  ED 
Sbjct: 127 YFHDQNPDAALRTLHQG-------DGLECMAMTIQILLKLDRLDLARKELKKMQDQDEDA 179

Query: 156 VSGDNEMILNLAESYIKFATNKETATSNFYYYEELS-QTFPTWKTQLGLLNLHLQQRNIA 214
                  +  LA +++  A   E     +Y ++EL+ +  PT     G    H  Q    
Sbjct: 180 T------LTQLATAWVNLAVGGEKLQEAYYIFQELADKCSPTLLLLNGQAACHSAQGRWE 233

Query: 215 EAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGLDTEDLTN----QLVKLDH 270
            A+G+++  L        K++     P  L N I L+   G   E +TN    QL     
Sbjct: 234 TAEGVLQEALD-------KDSG---HPETLINLIVLSQHLGKPPE-VTNRYLSQLKDAHR 282

Query: 271 EHAFIKHHQEIDAKFDELVRKYDTS 295
            H FIK +Q  +  FD L  +Y  S
Sbjct: 283 AHPFIKEYQAKENDFDRLAMQYAPS 307


>3MKR-A nrPDB
          Length = 291

 Score =  327 bits (837), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 67/325 (20%), Positives = 127/325 (39%), Gaps = 66/325 (20%)

Query: 2   DYFNIKQNYYTGNFVQCLQEIEKFSKVT-----DNTLLFYKAKTLLALGQYQSQDPTSKL 56
           + F++K  +Y G++ QC+ E ++    +     +  +  Y+A        Y +Q    K 
Sbjct: 2   ELFDVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRA--------YLAQ---RKY 50

Query: 57  GKVLD--------------LYVQFLDTKN-----IEELENLLKDKQNSPYELYLLATAQA 97
           G VLD              ++ ++L + +     + EL+  +    +     +LL  A  
Sbjct: 51  GVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASI 110

Query: 98  ILGD--LDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDT 155
              D   D +L T  +G        + E + + +++ L  + +  A        +  ED 
Sbjct: 111 YFYDQNPDAALRTLHQG-------DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDA 163

Query: 156 VSGDNEMILNLAESYIKFATNKETATSNFYYYEELS-QTFPTWKTQLGLLNLHLQQRNIA 214
                  +  LA +++  A   E     +Y ++E++ +  PT     G    H+ Q    
Sbjct: 164 T------LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWE 217

Query: 215 EAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGLDTEDLTN----QLVKLDH 270
            A+G+++  L        K++     P  L N + L+   G   E +TN    QL     
Sbjct: 218 AAEGVLQEALD-------KDSG---HPETLINLVVLSQHLGKPPE-VTNRYLSQLKDAHR 266

Query: 271 EHAFIKHHQEIDAKFDELVRKYDTS 295
            H FIK ++  +  FD LV +Y  S
Sbjct: 267 SHPFIKEYRAKENDFDRLVLQYAPS 291


>5OJF-A nrPDB
          Length = 314

 Score = 30.6 bits (67), Expect = 0.96,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 9/78 (11%)

Query: 173 FATNKETATSNFYYYEELSQTFPT---------WKTQLGLLNLHLQQRNIAEAQGIVELL 223
              N+  A    YYY    + + T          KT+  L + +L+Q    +A+ + + +
Sbjct: 163 LCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEI 222

Query: 224 LSDYYSVEQKENAVLYKP 241
           L+  +  E        KP
Sbjct: 223 LTRAHEKEFGSVNGENKP 240


>3ZFW-A nrPDB
          Length = 263

 Score = 29.8 bits (65), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 9/78 (11%)

Query: 173 FATNKETATSNFYYYEELSQTFPT---------WKTQLGLLNLHLQQRNIAEAQGIVELL 223
              N+  A    YYY    + + T          KT+  L + +L+Q    +A+ + + +
Sbjct: 116 LCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEI 175

Query: 224 LSDYYSVEQKENAVLYKP 241
           L+  +  E        KP
Sbjct: 176 LTRAHEKEFGSVNGENKP 193


>5F06-A nrPDB
          Length = 216

 Score = 29.8 bits (65), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 3/80 (3%)

Query: 21  EIEKFSKVTDNTLLFYKAKTLL--ALGQYQSQDPTSKLGKVLDLYVQFLDTKNIEELE-N 77
           E  +++      +  +    L   +  Q    D   KLGKVLD+Y   L +      +  
Sbjct: 103 ESHRYNPAIAPIVFQFMVAPLRGNSPDQTIIDDNVEKLGKVLDIYEAKLSSTKYLAGDFY 162

Query: 78  LLKDKQNSPYELYLLATAQA 97
            L D  + PY  YL+ T  A
Sbjct: 163 SLADLHHLPYTYYLMKTPAA 182


>3NF1-A nrPDB
          Length = 311

 Score = 29.4 bits (64), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 9/78 (11%)

Query: 173 FATNKETATSNFYYYEELSQTFPT---------WKTQLGLLNLHLQQRNIAEAQGIVELL 223
              N+       YYY+   + + T          KT+  L + +L+Q    +A+ + + +
Sbjct: 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI 221

Query: 224 LSDYYSVEQKENAVLYKP 241
           L+  +  E        KP
Sbjct: 222 LTRAHEREFGSVDDENKP 239


>2VS1-A nrPDB
          Length = 425

 Score = 29.0 bits (63), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/73 (15%), Positives = 30/73 (41%)

Query: 1   MDYFNIKQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQDPTSKLGKVL 60
           +DY     +++  N  Q +  + K S++ +   +      +   G Y ++   +  G   
Sbjct: 261 VDYLIHPNSFFQTNSYQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLAKRGFNVKGFDS 320

Query: 61  DLYVQFLDTKNIE 73
           + +   +  +N+E
Sbjct: 321 NEFAIEMARRNVE 333


>2X0S-A nrPDB
          Length = 913

 Score = 29.0 bits (63), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 241 PTFLANQITLALMQGLDTEDLTNQLVKLDHEHAFIKH 277
           P   A Q  LA   G+  E + N++  L   +  + H
Sbjct: 654 PHDAAAQFELAQKLGMPAEKVRNRVNALHELNPMLGH 690


>5OJ8-A nrPDB
          Length = 255

 Score = 29.0 bits (63), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 9/68 (13%)

Query: 173 FATNKETATSNFYYYEELSQTFPT---------WKTQLGLLNLHLQQRNIAEAQGIVELL 223
              N+       YYY+   + + T          KT+  L + +L+Q    +A+ + + +
Sbjct: 185 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI 244

Query: 224 LSDYYSVE 231
           L+  +  E
Sbjct: 245 LTRAHERE 252


>6FUZ-A nrPDB
          Length = 337

 Score = 28.2 bits (61), Expect = 4.2,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 9/78 (11%)

Query: 173 FATNKETATSNFYYYEELSQTFPT---------WKTQLGLLNLHLQQRNIAEAQGIVELL 223
              N+       YYY+     + T          KT+  L + +L+Q    +A+ + + +
Sbjct: 148 LCQNQGKYEEVEYYYQRALGIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI 207

Query: 224 LSDYYSVEQKENAVLYKP 241
           L+  +  E        KP
Sbjct: 208 LTRAHEREFGSVDDENKP 225


>1DOT-A nrPDB
          Length = 686

 Score = 27.9 bits (60), Expect = 6.0,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 46/128 (35%), Gaps = 9/128 (7%)

Query: 96  QAILGDLDKSLETCVEGIDNDEAEGTTELLLLA-IEVALLNNNVSTASTIFDNYTNAIE- 153
           Q  +G  +  ++ C  G D         ++    +E  +L++N      I     +AI  
Sbjct: 335 QLTVGPRENKIQWCAVGKDEKSKCDRWSVVSNGEVECTILDDNKDCIVKITKGEADAISL 394

Query: 154 DT----VSGDNEMILNLAESYI-KFATNKETATSNFYYYEELSQTFP--TWKTQLGLLNL 206
           D      +G   ++  + ESY  +   +K+     +Y+   + +     TW    G  + 
Sbjct: 395 DGGFVYTAGVCGLVPVVGESYEDETQCSKDEEQPAYYFAVAVVKKSSAITWNNLQGKKSC 454

Query: 207 HLQQRNIA 214
           H      A
Sbjct: 455 HTAVGRTA 462


>5L3R-A nrPDB
          Length = 301

 Score = 27.5 bits (59), Expect = 6.6,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 32/109 (29%), Gaps = 15/109 (13%)

Query: 189 ELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKE----NAVLYKPTFL 244
           + +++ PT     GL  +          +  V   L+ Y   + K        +Y+P  +
Sbjct: 100 QFAKSGPTVILLAGLQGV---------GKTTVCAKLACYLKKQGKSCMLIAGDVYRPAAI 150

Query: 245 ANQITLALMQGLDTEDLTNQLVKLDHEHAFIKHHQEIDAKFDELVRKYD 293
              + L    G+        +   D     +K         D ++    
Sbjct: 151 DQLVILGEQVGVPVYTAGTDVKPADIAKQGLKE--AKKNNVDVVIMDTA 197


>5LVV-A nrPDB
          Length = 749

 Score = 27.5 bits (59), Expect = 7.7,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 34/112 (30%), Gaps = 24/112 (21%)

Query: 188 EELSQTFPTWKT--------QLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLY 239
           +  S+T  T              L N+  +Q NI EA  +    L  +            
Sbjct: 13  QSTSKTSVTLSLGGGTHADSLNNLANIKREQGNIEEAVRLYRKALEVF------------ 60

Query: 240 KPTFLA---NQITLALMQGLDTEDLTNQLVKLDHEHAFIKHHQEIDAKFDEL 288
            P F A   N  ++   QG   E L +    +     F   +  +     E+
Sbjct: 61  -PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 111


>5O09-1C nrPDB
          Length = 238

 Score = 27.1 bits (58), Expect = 9.5,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 52/176 (29%), Gaps = 27/176 (15%)

Query: 146 DNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEE--LSQTFPTWKTQLGL 203
                   D ++G   ++ +L + + +     E          E  L ++      +  L
Sbjct: 64  QELRKQDPDLLTGIYSLLAHLYDRWGRMDKAAEFYELALKISAENGLEESDKVATIKNNL 123

Query: 204 LNLHLQQRNIAEAQGIVELLLSD----------------------YYSVEQKENAVLYKP 241
             +  Q R    A+G     L                        YYS    + A +   
Sbjct: 124 AMIFKQLRKFERAEGYYCEALETFQRLDGEQSARVASVYNNLGVLYYSHMDVDRAQVMHE 183

Query: 242 TFLANQITLALMQG-LDTEDLTNQLVKLDHEHAFIKHHQEIDAKFDELVRKYDTSN 296
             LA  I   L +G +D  DL+   + L   +      Q+ +A  D   R     N
Sbjct: 184 RALA--IRQNLHEGQMDPADLSQTFINLGAVYKAAGDFQKAEACVDRAKRIRAAMN 237


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.312    0.122    0.306 

Lambda     K      H
   0.267   0.0372    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,617,404
Number of Sequences: 36641
Number of extensions: 322416
Number of successful extensions: 921
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 889
Number of HSP's gapped (non-prelim): 34
length of query: 296
length of database: 10,336,785
effective HSP length: 96
effective length of query: 200
effective length of database: 6,819,249
effective search space: 1363849800
effective search space used: 1363849800
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (27.1 bits)