BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P40261 (264 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 5YJF-A nrPDB 539 e-154 5YJI-A nrPDB 465 e-132 2A14-A nrPDB 270 4e-73 3KQY-A nrPDB 177 4e-45 1D2C-A nrPDB 32 0.38 3BUS-A nrPDB 30 0.78 6HIV-A6 nrPDB 30 1.1 4I8O-A nrPDB 29 1.6 5TEO-A nrPDB 29 2.2 5HAX-A nrPDB 29 2.4 5O2U-A nrPDB 29 2.4 2VA8-A nrPDB 28 2.9 5UKB-D nrPDB 28 3.3 3NVS-A nrPDB 28 4.7 4KXR-B nrPDB 28 4.9 1VMB-A nrPDB 27 8.2 >5YJF-A nrPDB Length = 284 Score = 539 bits (1388), Expect = e-154, Method: Compositional matrix adjust. Identities = 261/264 (98%), Positives = 261/264 (98%) Query: 1 MESGFTSKDTYLSHFNPRDYLEKYYKFGSRHSAESQILKHLLKNLFKIFCLDGVKGDLLI 60 MESGFTSKDTYLSHFNPRDYLEKYYKFGSRHSAESQILKHLLKNLFKIFCLDGVKGDLLI Sbjct: 21 MESGFTSKDTYLSHFNPRDYLEKYYKFGSRHSAESQILKHLLKNLFKIFCLDGVKGDLLI 80 Query: 61 DIGSGPTIYQLLSACESFKEIVVTDYSDQNLQELEKWLKKEPEAFDWSPVVTYVCDLEGN 120 DIGSGPTIYQLLSACESFKEIVVTDYSDQNLQELEKWLK P AFDWSPVVTYVCDLEGN Sbjct: 81 DIGSGPTIYQLLSACESFKEIVVTDYSDQNLQELEKWLKAAPAAFDWSPVVTYVCDLEGN 140 Query: 121 RVKGPEKEEKLRQAVKQVLKCDVTQSQPLGAVPLPPADCVLSTLCLDAACPDLPTYCRAL 180 RVKGPEKEEKLRQAVKQVLKCDVTQSQPLGAVPLPPADCVLSTLCLDAACPDLPTYCRAL Sbjct: 141 RVKGPEKEEKLRQAVKQVLKCDVTQSQPLGAVPLPPADCVLSTLCLDAACPDLPTYCRAL 200 Query: 181 RNLGSLLKPGGFLVIMDALKSSYYMIGEQKFSSLPLGREAVEAAVKEAGYTIEWFEVISQ 240 RNLGSLLKPGGFLVIMDALKSSYYMIGEQKFSSLPLGREAVEAAVKEAGYTIEWFEVISQ Sbjct: 201 RNLGSLLKPGGFLVIMDALKSSYYMIGEQKFSSLPLGREAVEAAVKEAGYTIEWFEVISQ 260 Query: 241 SYSSTMANNEGLFSLVARKLSRPL 264 SYSSTMANNEGLFSLVARKLSRPL Sbjct: 261 SYSSTMANNEGLFSLVARKLSRPL 284 >5YJI-A nrPDB Length = 284 Score = 465 bits (1197), Expect = e-132, Method: Compositional matrix adjust. Identities = 224/262 (85%), Positives = 241/262 (91%) Query: 1 MESGFTSKDTYLSHFNPRDYLEKYYKFGSRHSAESQILKHLLKNLFKIFCLDGVKGDLLI 60 MESGFTSKDTYLSHFNPRDYLEKYY FGSRH AE++IL+HLLKNLFKIFCL VKG+LLI Sbjct: 21 MESGFTSKDTYLSHFNPRDYLEKYYSFGSRHCAENEILRHLLKNLFKIFCLGAVKGELLI 80 Query: 61 DIGSGPTIYQLLSACESFKEIVVTDYSDQNLQELEKWLKKEPEAFDWSPVVTYVCDLEGN 120 DIGSGPTIYQLLSACESF EI+V+DY+DQNL EL+KWLKKEP AFDWSPVVTYVCDLEGN Sbjct: 81 DIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGN 140 Query: 121 RVKGPEKEEKLRQAVKQVLKCDVTQSQPLGAVPLPPADCVLSTLCLDAACPDLPTYCRAL 180 R+KGPEKEEKLR+A+KQVLKCDVTQSQPLG V LPPADC+LSTLCLDAACPDLP Y AL Sbjct: 141 RMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTAL 200 Query: 181 RNLGSLLKPGGFLVIMDALKSSYYMIGEQKFSSLPLGREAVEAAVKEAGYTIEWFEVISQ 240 RNLGSLLKPGGFLV++DALKSSYYMIGEQKFSSLPLG E V AV+EAGYTIE FEVISQ Sbjct: 201 RNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFEVISQ 260 Query: 241 SYSSTMANNEGLFSLVARKLSR 262 +YSST +NNEGLFSLV RK R Sbjct: 261 NYSSTTSNNEGLFSLVGRKPGR 282 >2A14-A nrPDB Length = 263 Score = 270 bits (690), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 139/263 (52%), Positives = 177/263 (67%) Query: 1 MESGFTSKDTYLSHFNPRDYLEKYYKFGSRHSAESQILKHLLKNLFKIFCLDGVKGDLLI 60 M+ GFT D Y HF PRDYL YY F S E+++LK L+ L K F G++GD LI Sbjct: 1 MKGGFTGGDEYQKHFLPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLI 60 Query: 61 DIGSGPTIYQLLSACESFKEIVVTDYSDQNLQELEKWLKKEPEAFDWSPVVTYVCDLEGN 120 DIGSGPTIYQ+L+AC+SF++I ++D++D+N +ELEKWLKKEP A+DW+P V + C+LEGN Sbjct: 61 DIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGN 120 Query: 121 RVKGPEKEEKLRQAVKQVLKCDVTQSQPLGAVPLPPADCVLSTLCLDAACPDLPTYCRAL 180 + EKEEKLR AVK+VLKCDV PL LP ADCVL+ L ++ AC L Y AL Sbjct: 121 SGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAAL 180 Query: 181 RNLGSLLKPGGFLVIMDALKSSYYMIGEQKFSSLPLGREAVEAAVKEAGYTIEWFEVISQ 240 NL SLLKPGG LV L+ YM+G+++FS + L + VE AV +AG+ IE Q Sbjct: 181 CNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQ 240 Query: 241 SYSSTMANNEGLFSLVARKLSRP 263 SYS T A N G+ +VARK P Sbjct: 241 SYSVTNAANNGVCCIVARKKPGP 263 >3KQY-A nrPDB Length = 289 Score = 177 bits (449), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 99/253 (39%), Positives = 149/253 (58%), Gaps = 5/253 (1%) Query: 14 HFNPRDYLEKYYKFGSRHSAE-SQILKHLLKNLFKIFCLDGVKGDLLIDIGSGPTIYQLL 72 F PR YL Y + + L+ L + F V G LIDIGSGPT+YQLL Sbjct: 29 RFEPRAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLL 88 Query: 73 SACESFKEIVVTDYSDQNLQELEKWLKKEPEAFDWSPVVTYVCDLEGNRVKGPEKEEKLR 132 SAC F++I +TD+ + N QEL +WL++EP AF+WS + C +EG +KE +LR Sbjct: 89 SACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 148 Query: 133 QAVKQVLKCDVTQSQPLGA-VPLP-PADCVLSTLCLDAACPDLPTYCRALRNLGSLLKPG 190 VK+VL DV Q QPLGA P P PAD ++S CL+A PDL ++ RAL ++ +LL+PG Sbjct: 149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPG 208 Query: 191 GFLVIMDALKSSYYMIGEQKFSSLPLGREAVEAAVKEAGYTIEWFE--VISQSYSSTMAN 248 G L+++ AL+ S+Y+ GE + + +P+ E V A+ +GY + ++ + + + Sbjct: 209 GHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTYIMPAHLQTGVDD 268 Query: 249 NEGLFSLVARKLS 261 +G+F A+K+ Sbjct: 269 VKGVFFAWAQKVG 281 >1D2C-A nrPDB Length = 292 Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust. Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 44/147 (29%) Query: 59 LIDIGSGPTIYQLLSACESFKEIVVTDYSDQNLQEL--EKWLKKEPEAFD-WSPVVTYVC 115 ++D+ G + ++ E F + D SD+ L+ E+W +++ AFD W Sbjct: 60 VLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWV------- 111 Query: 116 DLEGNRVKGPEKEEKLRQAVKQVLKCDVTQSQPLGAVPLPPADCVLSTLCLDAACPDLPT 175 + +A L DV P D + +CL + LP Sbjct: 112 ---------------IEEANWLTLDKDV-----------PAGDGFDAVICLGNSFAHLPD 145 Query: 176 -------YCRALRNLGSLLKPGGFLVI 195 + AL+N+ S+++PGG LVI Sbjct: 146 SKGDQSEHRLALKNIASMVRPGGLLVI 172 >3BUS-A nrPDB Length = 273 Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust. Identities = 15/47 (31%), Positives = 23/47 (48%) Query: 151 AVPLPPADCVLSTLCLDAACPDLPTYCRALRNLGSLLKPGGFLVIMD 197 A+ LP D + + +P RALR + +L+PGG + I D Sbjct: 120 AMDLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIAD 166 >6HIV-A6 nrPDB Length = 114 Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 10/60 (16%) Query: 76 ESFKEIVVTDYSDQNLQELEKWLKKEPEAFD----------WSPVVTYVCDLEGNRVKGP 125 K +V S+ N +E +LK E E D W PV+ C + ++KGP Sbjct: 31 RKIKNNMVALRSEANTGHMEGYLKTETERLDATGRKVQKVLWDPVLQRHCLFKETKIKGP 90 >4I8O-A nrPDB Length = 358 Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust. Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 21/119 (17%) Query: 160 VLSTLCLDAACPDLPTYCR----ALRNLGSLLK------------PGGFLVIMDALKSSY 203 ++S LC+ A PDLP YC LR + +LK P GF D +++ Sbjct: 231 LVSGLCVKLAAPDLPDYCMLLYPELRTIEGVLKSKMSGLGMPVQQPAGFGTYFDK-PAAH 289 Query: 204 YMIGEQKFSSLPLGREAVEAAVKEAGYTIEWFEVISQSYSSTMANNEGLFSLVARKLSR 262 Y++ Q ++L + + YT E S + T+ + + S +AR + + Sbjct: 290 YILKPQFAATL----RPEQINIISTAYTFFNVERHSLFHMETVVDASRMISDMARLMGK 344 >5TEO-A nrPDB Length = 110 Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust. Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 18 RDYLEKYYKFGSRHSAESQILKHLLKNLFKIFCLDGVKGDLLIDIGSGPTIYQLLSACES 77 RDY++++YK R SQ +K+ + + + +L +G G T+ ++++AC+ Sbjct: 27 RDYVDRFYKT-LRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQG 85 Query: 78 F 78 Sbjct: 86 V 86 >5HAX-A nrPDB Length = 742 Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust. Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 4/29 (13%) Query: 154 LPP----ADCVLSTLCLDAACPDLPTYCR 178 LPP A V TL LD + PDL +YCR Sbjct: 3 LPPVAKAAQVVNQTLQLDDSYPDLDSYCR 31 >5O2U-A nrPDB Length = 500 Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust. Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Query: 18 RDYLEKYYKFGSRHSAESQILKHLLKNLFKIFCLDGVKGDLLIDIGSGPTIYQLLSACE 76 RDY++++YK R SQ +K+ + + + +L +G G T+ ++++AC+ Sbjct: 294 RDYVDRFYKT-LRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQ 351 >2VA8-A nrPDB Length = 715 Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 15/113 (13%) Query: 1 MESG-FTSKDTYLSHFNPRDYLEKYYKFGS--RHSAESQILKHLLKNLFKIFCLDGVKGD 57 M SG + + D +L +++ + Y K S RH E N F LD + Sbjct: 107 MTSGDYDTDDAWLKNYDI--IITTYEKLDSLWRHRPE-------WLNEVNYFVLDELH-- 155 Query: 58 LLIDIGSGPTIYQLLSACESFKEIVVTDYSDQNLQELEKWLKKEPEAFDWSPV 110 L D GP + + ++ + ++ + N +++ KWL EP A +W PV Sbjct: 156 YLNDPERGPVV-ESVTIRAKRRNLLALSATISNYKQIAKWLGAEPVATNWRPV 207 >5UKB-D nrPDB Length = 423 Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 14/86 (16%) Query: 160 VLSTLCLDAACPD--------------LPTYCRALRNLGSLLKPGGFLVIMDALKSSYYM 205 ++S LD PD LP Y L +G P +MD L + M Sbjct: 108 LVSLKALDGVLPDGVSDASRTSADDKWLPLYLLGLYRVGRTQMPEYRKKLMDGLTNQCKM 167 Query: 206 IGEQKFSSLPLGREAVEAAVKEAGYT 231 I EQ +P GR+ + ++ YT Sbjct: 168 INEQFEPLVPEGRDIFDVWGNDSNYT 193 >3NVS-A nrPDB Length = 450 Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 14/62 (22%) Query: 185 SLLKPGGFLVIMDALKSSYYMI------GEQKFSSLPLGREAVEA------AVKEAGYTI 232 S + PG FLV DA +SY++ GE K + +G+ +++ A+++ G I Sbjct: 255 SYVSPGQFLVEGDASSASYFLAAAAIKGGEVKVTG--IGKNSIQGDIQFADALEKMGAQI 312 Query: 233 EW 234 EW Sbjct: 313 EW 314 >4KXR-B nrPDB Length = 194 Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust. Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 2/50 (4%) Query: 59 LIDIGSGPTIYQLLSACESFKEIVVTDYSDQNLQELEKWLKKEPEAFDWS 108 L+D +GP + QL+ A + F +TD Q L E+E+ + + A++W+ Sbjct: 52 LMDAWAGPVVMQLMEAAKPFVRW-LTDLCVQ-LSEVERQIHEIVRAYEWA 99 >1VMB-A nrPDB Length = 140 Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 15/115 (13%) Query: 39 KHLLKNLFKIFCLDGVKG--DLLIDIGSGPTIYQLLSACESFKEIVVTDYSDQNLQELEK 96 ++L++ + KI + VKG D + +G Y++ E ++ QNLQELE Sbjct: 37 ENLVERVKKI-IEERVKGKIDKVERMGMRKFAYEIKKFNEGDYTVIYFRCDGQNLQELEN 95 Query: 97 WLKKEPEAFDWSPVVTYVCDLEGNRVKGPEKEEKLRQAVKQVLKCDVTQSQPLGA 151 + + PE W + DL E+K R+A ++ + T+S G+ Sbjct: 96 FYRVTPEIIRWQTFRRF--DL----------EKKERKAQREKAAAEATESSEGGS 138 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 5YJF-A nrPDB 481 e-136 5YJI-A nrPDB 471 e-133 2A14-A nrPDB 436 e-123 3KQY-A nrPDB 385 e-108 Sequences not found previously or not previously below threshold: 2VA8-A nrPDB 34 0.080 1L5N-A nrPDB 33 0.15 5SVA-Z nrPDB 33 0.17 5FMF-1 nrPDB 33 0.17 1D2C-A nrPDB 32 0.25 3CF4-A nrPDB 31 0.47 3OFK-A nrPDB 31 0.65 5TEO-A nrPDB 30 0.96 5HH9-A nrPDB 30 0.97 5O2U-A nrPDB 30 1.1 1AUM-A nrPDB 30 1.3 5OQJ-7 nrPDB 30 1.4 4AIB-A nrPDB 29 1.6 4KXR-B nrPDB 29 1.9 1VRM-A nrPDB 29 2.6 1H2A-S nrPDB 28 5.3 1ZZG-A nrPDB 28 5.9 4RAS-A nrPDB 27 6.4 CONVERGED! >5YJF-A nrPDB Length = 284 Score = 481 bits (1238), Expect = e-136, Method: Composition-based stats. Identities = 261/264 (98%), Positives = 261/264 (98%) Query: 1 MESGFTSKDTYLSHFNPRDYLEKYYKFGSRHSAESQILKHLLKNLFKIFCLDGVKGDLLI 60 MESGFTSKDTYLSHFNPRDYLEKYYKFGSRHSAESQILKHLLKNLFKIFCLDGVKGDLLI Sbjct: 21 MESGFTSKDTYLSHFNPRDYLEKYYKFGSRHSAESQILKHLLKNLFKIFCLDGVKGDLLI 80 Query: 61 DIGSGPTIYQLLSACESFKEIVVTDYSDQNLQELEKWLKKEPEAFDWSPVVTYVCDLEGN 120 DIGSGPTIYQLLSACESFKEIVVTDYSDQNLQELEKWLK P AFDWSPVVTYVCDLEGN Sbjct: 81 DIGSGPTIYQLLSACESFKEIVVTDYSDQNLQELEKWLKAAPAAFDWSPVVTYVCDLEGN 140 Query: 121 RVKGPEKEEKLRQAVKQVLKCDVTQSQPLGAVPLPPADCVLSTLCLDAACPDLPTYCRAL 180 RVKGPEKEEKLRQAVKQVLKCDVTQSQPLGAVPLPPADCVLSTLCLDAACPDLPTYCRAL Sbjct: 141 RVKGPEKEEKLRQAVKQVLKCDVTQSQPLGAVPLPPADCVLSTLCLDAACPDLPTYCRAL 200 Query: 181 RNLGSLLKPGGFLVIMDALKSSYYMIGEQKFSSLPLGREAVEAAVKEAGYTIEWFEVISQ 240 RNLGSLLKPGGFLVIMDALKSSYYMIGEQKFSSLPLGREAVEAAVKEAGYTIEWFEVISQ Sbjct: 201 RNLGSLLKPGGFLVIMDALKSSYYMIGEQKFSSLPLGREAVEAAVKEAGYTIEWFEVISQ 260 Query: 241 SYSSTMANNEGLFSLVARKLSRPL 264 SYSSTMANNEGLFSLVARKLSRPL Sbjct: 261 SYSSTMANNEGLFSLVARKLSRPL 284 >5YJI-A nrPDB Length = 284 Score = 471 bits (1211), Expect = e-133, Method: Composition-based stats. Identities = 224/262 (85%), Positives = 241/262 (91%) Query: 1 MESGFTSKDTYLSHFNPRDYLEKYYKFGSRHSAESQILKHLLKNLFKIFCLDGVKGDLLI 60 MESGFTSKDTYLSHFNPRDYLEKYY FGSRH AE++IL+HLLKNLFKIFCL VKG+LLI Sbjct: 21 MESGFTSKDTYLSHFNPRDYLEKYYSFGSRHCAENEILRHLLKNLFKIFCLGAVKGELLI 80 Query: 61 DIGSGPTIYQLLSACESFKEIVVTDYSDQNLQELEKWLKKEPEAFDWSPVVTYVCDLEGN 120 DIGSGPTIYQLLSACESF EI+V+DY+DQNL EL+KWLKKEP AFDWSPVVTYVCDLEGN Sbjct: 81 DIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGN 140 Query: 121 RVKGPEKEEKLRQAVKQVLKCDVTQSQPLGAVPLPPADCVLSTLCLDAACPDLPTYCRAL 180 R+KGPEKEEKLR+A+KQVLKCDVTQSQPLG V LPPADC+LSTLCLDAACPDLP Y AL Sbjct: 141 RMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTAL 200 Query: 181 RNLGSLLKPGGFLVIMDALKSSYYMIGEQKFSSLPLGREAVEAAVKEAGYTIEWFEVISQ 240 RNLGSLLKPGGFLV++DALKSSYYMIGEQKFSSLPLG E V AV+EAGYTIE FEVISQ Sbjct: 201 RNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFEVISQ 260 Query: 241 SYSSTMANNEGLFSLVARKLSR 262 +YSST +NNEGLFSLV RK R Sbjct: 261 NYSSTTSNNEGLFSLVGRKPGR 282 >2A14-A nrPDB Length = 263 Score = 436 bits (1120), Expect = e-123, Method: Composition-based stats. Identities = 139/263 (52%), Positives = 177/263 (67%) Query: 1 MESGFTSKDTYLSHFNPRDYLEKYYKFGSRHSAESQILKHLLKNLFKIFCLDGVKGDLLI 60 M+ GFT D Y HF PRDYL YY F S E+++LK L+ L K F G++GD LI Sbjct: 1 MKGGFTGGDEYQKHFLPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLI 60 Query: 61 DIGSGPTIYQLLSACESFKEIVVTDYSDQNLQELEKWLKKEPEAFDWSPVVTYVCDLEGN 120 DIGSGPTIYQ+L+AC+SF++I ++D++D+N +ELEKWLKKEP A+DW+P V + C+LEGN Sbjct: 61 DIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGN 120 Query: 121 RVKGPEKEEKLRQAVKQVLKCDVTQSQPLGAVPLPPADCVLSTLCLDAACPDLPTYCRAL 180 + EKEEKLR AVK+VLKCDV PL LP ADCVL+ L ++ AC L Y AL Sbjct: 121 SGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAAL 180 Query: 181 RNLGSLLKPGGFLVIMDALKSSYYMIGEQKFSSLPLGREAVEAAVKEAGYTIEWFEVISQ 240 NL SLLKPGG LV L+ YM+G+++FS + L + VE AV +AG+ IE Q Sbjct: 181 CNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQ 240 Query: 241 SYSSTMANNEGLFSLVARKLSRP 263 SYS T A N G+ +VARK P Sbjct: 241 SYSVTNAANNGVCCIVARKKPGP 263 >3KQY-A nrPDB Length = 289 Score = 385 bits (990), Expect = e-108, Method: Composition-based stats. Identities = 99/254 (38%), Positives = 149/254 (58%), Gaps = 5/254 (1%) Query: 13 SHFNPRDYLEKYYKFGSRHSAE-SQILKHLLKNLFKIFCLDGVKGDLLIDIGSGPTIYQL 71 F PR YL Y + + L+ L + F V G LIDIGSGPT+YQL Sbjct: 28 QRFEPRAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQL 87 Query: 72 LSACESFKEIVVTDYSDQNLQELEKWLKKEPEAFDWSPVVTYVCDLEGNRVKGPEKEEKL 131 LSAC F++I +TD+ + N QEL +WL++EP AF+WS + C +EG +KE +L Sbjct: 88 LSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 147 Query: 132 RQAVKQVLKCDVTQSQPLGA-VPLP-PADCVLSTLCLDAACPDLPTYCRALRNLGSLLKP 189 R VK+VL DV Q QPLGA P P PAD ++S CL+A PDL ++ RAL ++ +LL+P Sbjct: 148 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRP 207 Query: 190 GGFLVIMDALKSSYYMIGEQKFSSLPLGREAVEAAVKEAGYTIEWFE--VISQSYSSTMA 247 GG L+++ AL+ S+Y+ GE + + +P+ E V A+ +GY + ++ + + Sbjct: 208 GGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTYIMPAHLQTGVD 267 Query: 248 NNEGLFSLVARKLS 261 + +G+F A+K+ Sbjct: 268 DVKGVFFAWAQKVG 281 >2VA8-A nrPDB Length = 715 Score = 33.9 bits (76), Expect = 0.080, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 25/135 (18%) Query: 1 MESG-FTSKDTYLSHFNPRDYLEKYYKFGS--RHSAE--SQILKHLLKNLFKIFCLDGVK 55 M SG + + D +L +++ + Y K S RH E +++ +L L Sbjct: 107 MTSGDYDTDDAWLKNYD--IIITTYEKLDSLWRHRPEWLNEVNYFVLDELH--------- 155 Query: 56 GDLLIDIGSGPTIYQLLSACESFKEIVVTDYSDQNLQELEKWLKKEPEAFDWSPVVTYVC 115 L D GP + + + + ++ + N +++ KWL EP A +W PV Sbjct: 156 --YLNDPERGPVVESVTIRAKR-RNLLALSATISNYKQIAKWLGAEPVATNWRPVP---- 208 Query: 116 DLEGNRVKGPEKEEK 130 +EG V PE+++K Sbjct: 209 LIEG--VIYPERKKK 221 >1L5N-A nrPDB Length = 356 Score = 32.7 bits (73), Expect = 0.15, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 8/104 (7%) Query: 161 LSTLCLDAACPDLPTYCRALRNLGSLLKPGGFLVIMDALKSSYYMIGEQKFSSLP-LGRE 219 L L D PD R +++ LLKP G L ++ L + G + P +G + Sbjct: 4 LHALLRDIPAPDAEAMARTQQHIDGLLKPPGSLGRLETLAVQ--LAGMPGLNGTPQVGEK 61 Query: 220 AVEAAVKEAGYTIEWFEVISQSYSSTMANN-----EGLFSLVAR 258 AV + G E V + ++ A N G+ L A+ Sbjct: 62 AVLVMCADHGVWDEGVAVSPKIVTAIQAANMTRGTTGVCVLAAQ 105 >5SVA-Z nrPDB Length = 843 Score = 32.7 bits (73), Expect = 0.17, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 5/76 (6%) Query: 33 AESQILKHLLKNLFKIFCLD-GVKGDLLIDIGSGPTIYQLLSACESFKEIVVTDYSDQN- 90 +QI + K+L K+F G +++ G+G T+ + +AC K ++V S + Sbjct: 358 PSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGITAACTIKKSVIVLCTSSVSV 417 Query: 91 ---LQELEKWLKKEPE 103 Q+ +W +PE Sbjct: 418 MQWRQQFLQWCTLQPE 433 >5FMF-1 nrPDB Length = 492 Score = 32.7 bits (73), Expect = 0.17, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 5/76 (6%) Query: 33 AESQILKHLLKNLFKIFCLD-GVKGDLLIDIGSGPTIYQLLSACESFKEIVVTDYSDQN- 90 +QI + K+L K+F G +++ G+G T+ + +AC K ++V S + Sbjct: 65 PSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGITAACTIKKSVIVLCTSSVSV 124 Query: 91 ---LQELEKWLKKEPE 103 Q+ +W +PE Sbjct: 125 MQWRQQFLQWCTLQPE 140 >1D2C-A nrPDB Length = 292 Score = 31.9 bits (71), Expect = 0.25, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 7/49 (14%) Query: 154 LPPADCVLSTLCLDAACPDLP-------TYCRALRNLGSLLKPGGFLVI 195 +P D + +CL + LP + AL+N+ S+++PGG LVI Sbjct: 124 VPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI 172 >3CF4-A nrPDB Length = 807 Score = 31.2 bits (69), Expect = 0.47, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 61/166 (36%), Gaps = 19/166 (11%) Query: 7 SKDTYLSHFNPRDYLEKYYKFGSRHSAESQILKHLL---KNLFKIFCLDGVKGDLLIDIG 63 +KD Y + ++L++ + + I K L++ F G + L +IG Sbjct: 530 TKDVY---YIAEEFLKRNFIVVTTGCGAMDIGMFKDADGKTLYERF-PGGFQCGGLANIG 585 Query: 64 SGPTIYQLLSACESFKEIVVTDYSDQNLQELEKWLKKEPEA--FDWSPVVTYV------C 115 S + + A E I + NL E+ ++ A W C Sbjct: 586 SCVSNAHITGAAEKVAAIFAQRTLEGNLAEIGDYILNRVGACGLAWGAFSQKASSIGTGC 645 Query: 116 DLEG-NRVKGPEKEEKLRQAVKQVLKCD---VTQSQPLGAVPLPPA 157 ++ G V GP + R + + + D V ++ +P+PPA Sbjct: 646 NIFGIPAVLGPHSSKYRRALIAKTYEEDKWKVYDARNGQEMPIPPA 691 >3OFK-A nrPDB Length = 216 Score = 30.8 bits (68), Expect = 0.65, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 6/70 (8%) Query: 172 DLPTYCRALRNLGSLLKPGGFLVIMDALKSSYYMIGEQKFSSLPLGREAVEAAVKEAGYT 231 D+ A+ N+ +L PGG LV A ++ +++ + G E V + EA Sbjct: 129 DMTQMRTAIDNMVKMLAPGGHLVFGSARDATC-----RRWGHVA-GAETVITILTEALTE 182 Query: 232 IEWFEVISQS 241 +E + QS Sbjct: 183 VERVQCQGQS 192 >5TEO-A nrPDB Length = 110 Score = 30.0 bits (66), Expect = 0.96, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Query: 18 RDYLEKYYKFGSRHSAESQILKHLLKNLFKIFCLDGVKGDLLIDIGSGPTIYQLLSACE 76 RDY++++YK A ++ + + L K +L +G G T+ ++++AC+ Sbjct: 27 RDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCK-TILKALGPGATLEEMMTACQ 84 >5HH9-A nrPDB Length = 390 Score = 30.0 bits (66), Expect = 0.97, Method: Composition-based stats. Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%) Query: 167 DAACPDLPTYCRALRNLGSLLKPGGF 192 + P +PT+ RA N G+L+ PGG+ Sbjct: 247 EHLVPSIPTFSRA-DNFGTLMTPGGY 271 >5O2U-A nrPDB Length = 500 Score = 30.0 bits (66), Expect = 1.1, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Query: 18 RDYLEKYYKFGSRHSAESQILKHLLKNLFKIFCLDGVKGDLLIDIGSGPTIYQLLSACE 76 RDY++++YK A ++ + + L K +L +G G T+ ++++AC+ Sbjct: 294 RDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCK-TILKALGPGATLEEMMTACQ 351 >1AUM-A nrPDB Length = 70 Score = 29.6 bits (65), Expect = 1.3, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Query: 18 RDYLEKYYKFGSRHSAESQILKHLLKNLFKIFCLDGVKGDLLIDIGSGPTIYQLLSACE 76 RDY++++YK A ++ + + L K +L +G G T+ ++++AC+ Sbjct: 12 RDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCK-TILKALGPGATLEEMMTACQ 69 >5OQJ-7 nrPDB Length = 843 Score = 29.6 bits (65), Expect = 1.4, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query: 33 AESQILKHLLKNLFKIFCLD-GVKGDLLIDIGSGPTIYQLLSACESFKEIVV 83 +QI + K+L K+F G +++ G+G T+ + +AC K ++V Sbjct: 358 PSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGITAACTIKKSVIV 409 >4AIB-A nrPDB Length = 395 Score = 29.2 bits (64), Expect = 1.6, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 16/110 (14%) Query: 29 SRHSAESQILKHLLKNLFKIFCLDGVKG--DLLIDIGSGPTIYQLLSACESFKEIVVTDY 86 S S++ L L G LIDIG G S F+E T Sbjct: 187 GSDSHNSEVFTKALTKARNTVTLAEQFGMKPYLIDIGGG------FSQVAPFEEFAAT-- 238 Query: 87 SDQNLQELE-----KWLKKEPEAFDWSPVVTYVCDLEGNRVKGPEKEEKL 131 ++ ++ELE +++ EP + S V L G RV+ ++++ Sbjct: 239 IEKTIKELEFPERTRFI-AEPGRYMASNAFHLVSSLHGKRVRIQNGKKQI 287 >4KXR-B nrPDB Length = 194 Score = 29.2 bits (64), Expect = 1.9, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%) Query: 58 LLIDIGSGPTIYQLLSACESFKEIVVTDYSDQNLQELEKWLKKEPEAFDWS 108 L+D +GP + QL+ A + F +TD L E+E+ + + A++W+ Sbjct: 51 SLMDAWAGPVVMQLMEAAKPFVR-WLTDLC-VQLSEVERQIHEIVRAYEWA 99 >1VRM-A nrPDB Length = 325 Score = 28.9 bits (63), Expect = 2.6, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 1/45 (2%) Query: 187 LKPGGFLVIMDALKSSYYMIGEQKFSSLPLGREAVEAAVKEAGYT 231 L G F + L + G + +P RE +E A+K GY Sbjct: 98 LTDGAFDPTVGRLLELWGFTGNYENLRVP-SREEIEEALKHTGYK 141 >1H2A-S nrPDB Length = 317 Score = 27.7 bits (60), Expect = 5.3, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 22/51 (43%) Query: 213 SLPLGREAVEAAVKEAGYTIEWFEVISQSYSSTMANNEGLFSLVARKLSRP 263 S+ LG+E VE + E G + F + + TM VAR L P Sbjct: 4 SIGLGKEGVEERLAERGVSRRDFLKFCTAIAVTMGMGPAFAPEVARALMGP 54 >1ZZG-A nrPDB Length = 415 Score = 27.7 bits (60), Expect = 5.9, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 20/37 (54%) Query: 196 MDALKSSYYMIGEQKFSSLPLGREAVEAAVKEAGYTI 232 ++ L+++ Y+ G+ F L EA A+ EAG + Sbjct: 325 VEGLEAASYLFGKTLFQLLKAEAEATYEALAEAGQRV 361 >4RAS-A nrPDB Length = 704 Score = 27.3 bits (59), Expect = 6.4, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 23/48 (47%) Query: 76 ESFKEIVVTDYSDQNLQELEKWLKKEPEAFDWSPVVTYVCDLEGNRVK 123 + FK D ++ QE +++ K P A P++ + L+G R K Sbjct: 289 DFFKRAEAGDLGEKAKQEKKRFPMKHPLALGMQPLIQNMVPLQGTREK 336 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.309 0.135 0.377 Lambda K H 0.267 0.0415 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,178,314 Number of Sequences: 36641 Number of extensions: 392569 Number of successful extensions: 1172 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 26 Number of HSP's that attempted gapping in prelim test: 1147 Number of HSP's gapped (non-prelim): 46 length of query: 264 length of database: 10,336,785 effective HSP length: 95 effective length of query: 169 effective length of database: 6,855,890 effective search space: 1158645410 effective search space used: 1158645410 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 58 (26.9 bits)