BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= P38902
         (120 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3J1N-K nrPDB                                                          245   3e-66
6J4X-K nrPDB                                                          140   9e-35
6O9L-K nrPDB                                                          115   3e-27
3H0G-K nrPDB                                                          112   3e-26
2PMZ-L nrPDB                                                           48   8e-07
2WB1-L nrPDB                                                           48   1e-06
6CNF-K nrPDB                                                           45   6e-06
4QJV-B nrPDB                                                           43   4e-05
1XPP-A nrPDB                                                           37   0.002
5WLC-ST nrPDB                                                          29   0.56 
5OHK-A nrPDB                                                           28   0.85 
6MHW-A nrPDB                                                           26   3.2  
6J0Z-C nrPDB                                                           26   3.5  
5SZL-A nrPDB                                                           26   3.5  
3QTP-A nrPDB                                                           26   3.7  
4MYG-A nrPDB                                                           26   4.2  
4ZI9-A nrPDB                                                           26   4.9  

>3J1N-K nrPDB
          Length = 120

 Score =  245 bits (626), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 120/120 (100%), Positives = 120/120 (100%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60
           MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA
Sbjct: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60

Query: 61  YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLAADDAF 120
           YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLAADDAF
Sbjct: 61  YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLAADDAF 120


>6J4X-K nrPDB
          Length = 118

 Score =  140 bits (354), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 67/118 (56%), Positives = 82/118 (69%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60
           MNAPDRFELF+L +   KLKI PD++ PN ++I FE+EDHTL NL+R EL     V F A
Sbjct: 1   MNAPDRFELFILPDDVPKLKITPDSRVPNCIIIKFEREDHTLANLLREELALYPDVTFVA 60

Query: 61  YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLAADD 118
           YKVEHP FA F +R+QT EG  PK AL+ AC SIINKL  L   F  EWN++  + +D
Sbjct: 61  YKVEHPLFANFVMRLQTEEGTRPKQALERACASIINKLKTLDHKFNEEWNIKNFSLND 118


>6O9L-K nrPDB
          Length = 117

 Score =  115 bits (289), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 55/105 (52%), Positives = 72/105 (68%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60
           MNAP  FE FLL EGE K+ I+ DTK PNA + T  KEDHTLGN+I+++LL D +VLFA 
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 61  YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNF 105
           YKV HP   +  +R+QTT  Y P++A  NA   +I++L  L+  F
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105


>3H0G-K nrPDB
          Length = 123

 Score =  112 bits (281), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 75/117 (64%), Gaps = 1/117 (0%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60
           MN P+R+EL  L  G  K+  + D+K+PNA V+T EKEDHTL N++  +LL+D +VLFA 
Sbjct: 1   MNQPERYELIELM-GLPKVTYELDSKSPNAAVVTLEKEDHTLANMLANQLLSDERVLFAG 59

Query: 61  YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLAAD 117
           YKV HP    F LR+QT E   PK  + +A  S+I  L  +K NF  EW L+ ++ +
Sbjct: 60  YKVPHPLNHNFILRVQTVEDCSPKQVIVDAAKSLITHLEEIKVNFMREWELKMISVE 116


>2PMZ-L nrPDB
          Length = 92

 Score = 48.1 bits (113), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 34/66 (51%)

Query: 29 NAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEGYDPKDALK 88
          N + +  E EDHTLGNLI   L     V FA+Y   HP   +  ++I T     PKDAL 
Sbjct: 11 NYLELEIEGEDHTLGNLIAGTLRRISGVSFASYYQPHPLSDKIIVKILTDGSITPKDALL 70

Query: 89 NACNSI 94
           A  +I
Sbjct: 71 KAIENI 76


>2WB1-L nrPDB
          Length = 92

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 34/66 (51%)

Query: 29 NAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEGYDPKDALK 88
          N + +  E EDHTLGNLI   L     V FA+Y   HP   +  ++I T     PKDAL 
Sbjct: 11 NYLELEIEGEDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVKILTDGSIAPKDALL 70

Query: 89 NACNSI 94
           A  ++
Sbjct: 71 KAIETV 76


>6CNF-K nrPDB
          Length = 142

 Score = 45.4 bits (106), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 8/102 (7%)

Query: 4   PDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKV 63
           PDR ++ LL +  S    +  T A   +V    +EDHTLGN +R  ++ +  V F  Y +
Sbjct: 42  PDREKIKLLTQATS----EDGTSASFQIV----EEDHTLGNALRYVIMKNPDVEFCGYSI 93

Query: 64  EHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNF 105
            HP      +RIQT       DAL+     +++    +++ F
Sbjct: 94  PHPSENLLNIRIQTYGETTAVDALQKGLKDLMDLCDVVESKF 135


>4QJV-B nrPDB
          Length = 94

 Score = 42.7 bits (99), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 19 LKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQ-T 77
          ++I+   +  N +    E EDHT  NL+   L  +  V FA Y +EHP     K R +  
Sbjct: 1  MRIEVIRREENLLEFYLEGEDHTFANLLTETLHENEHVTFAGYTIEHPITMARKPRFKVV 60

Query: 78 TEG-YDPKDALKNACNSIINK 97
          T+G   P+ AL+ A   I ++
Sbjct: 61 TDGKITPEKALEEAAQKIFDR 81


>1XPP-A nrPDB
          Length = 115

 Score = 37.0 bits (84), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 3/96 (3%)

Query: 15  GESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLR 74
            ES L++   +K  N++ +     D+TL   +  E+L D +V  A Y ++HP     ++ 
Sbjct: 9   AESSLRVI--SKEKNSITVEMINYDNTLLRTLVEEILKDDQVDEARYYIKHPVIDNPQIY 66

Query: 75  IQTTEGYDPKDALKNACNSIINKLGALKTNFETEWN 110
           ++   G  P+ A+K A   +      L T F+ E+ 
Sbjct: 67  VRVKSG-KPQSAIKRAVRKLSKLYEDLGTQFQKEFQ 101


>5WLC-ST nrPDB
          Length = 792

 Score = 28.9 bits (63), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 18/69 (26%), Positives = 33/69 (47%)

Query: 44  NLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKT 103
           N ++A+L  +RK      + +  F AR ++  +  E  D    + +  N+I  + GA K 
Sbjct: 720 NKMKAQLKKERKFTMKEIRKDAKFEARQRIEEKNKESSDYHAKMAHIVNTINTEEGAEKN 779

Query: 104 NFETEWNLQ 112
            +E E  L+
Sbjct: 780 KYERERKLR 788


>5OHK-A nrPDB
          Length = 336

 Score = 28.1 bits (61), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 32  VITFEKED-HTLGNLIRAELLNDRKVLFAAYKVEHPFFARF 71
           + +FE++D H L ++I + L ++R    + +K +HPF  R 
Sbjct: 93  ISSFEEQDAHELFHVITSSLEDERDGSGSHWKSQHPFHGRL 133


>6MHW-A nrPDB
          Length = 826

 Score = 26.2 bits (56), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 19  LKIDPDTKAPNAVVITFEKEDHTLGNLIRAE 49
           L I+P+TK    +++ F +E+  LG  I AE
Sbjct: 178 LNINPNTKEIVRILLAFAEENDILGRFINAE 208


>6J0Z-C nrPDB
          Length = 491

 Score = 26.2 bits (56), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 18  KLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDR 54
           KL +D   +AP  ++ T+  E H +G  I    L  R
Sbjct: 305 KLALDISGRAPQGLLDTYHSERHPVGQRILTNTLAQR 341


>5SZL-A nrPDB
          Length = 427

 Score = 26.2 bits (56), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 12/64 (18%)

Query: 22  DPDTKAPNAVVITFEKEDHTLGNLIR-----AELLNDRKVLFAAYKVEHPFFARFKLRIQ 76
           DPD  A   V  +F K DH++    +      EL N   + F  YKV       + + IQ
Sbjct: 240 DPDEGANGRVTYSFHKVDHSVVRKFQLDAYTGELSNKEPLDFEEYKV-------YPMEIQ 292

Query: 77  TTEG 80
             +G
Sbjct: 293 AQDG 296


>3QTP-A nrPDB
          Length = 441

 Score = 26.2 bits (56), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 3/23 (13%)

Query: 88  KNACNSI---INKLGALKTNFET 107
           KNACNS+   +N++G L   F+T
Sbjct: 343 KNACNSVLIKVNQIGTLTETFKT 365


>4MYG-A nrPDB
          Length = 372

 Score = 25.8 bits (55), Expect = 4.2,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 18/35 (51%)

Query: 51  LNDRKVLFAAYKVEHPFFARFKLRIQTTEGYDPKD 85
           L+  K L AA  + HPFF  F+   + TE   P D
Sbjct: 311 LDVDKRLTAAQALTHPFFEPFRDPEEETEAQQPFD 345


>4ZI9-A nrPDB
          Length = 318

 Score = 25.8 bits (55), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 12/64 (18%)

Query: 22  DPDTKAPNAVVITFEKEDHTLGNLIR-----AELLNDRKVLFAAYKVEHPFFARFKLRIQ 76
           DPD  A   V  +F K DH++    +      EL N   + F  YKV       + + IQ
Sbjct: 241 DPDEGANGRVTYSFHKVDHSVVRKFQLDAYTGELSNKEPLDFEEYKV-------YPMEIQ 293

Query: 77  TTEG 80
             +G
Sbjct: 294 AQDG 297


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

3J1N-K nrPDB                                                          168   5e-43
6J4X-K nrPDB                                                          158   4e-40
3H0G-K nrPDB                                                          145   4e-36
6O9L-K nrPDB                                                          137   1e-33
6CNF-K nrPDB                                                          102   3e-23
1XPP-A nrPDB                                                           99   3e-22
2PMZ-L nrPDB                                                           96   4e-21
2WB1-L nrPDB                                                           94   9e-21
4QJV-B nrPDB                                                           89   6e-19

Sequences not found previously or not previously below threshold:

5ZX3-A nrPDB                                                           29   0.58 
6CCE-A nrPDB                                                           28   1.2  
1BCC-A nrPDB                                                           27   1.5  
5GUP-L nrPDB                                                           27   1.8  
1IW7-A nrPDB                                                           27   2.4  
3IFS-A nrPDB                                                           26   3.1  
1HQM-A nrPDB                                                           26   3.4  
2PLE-A nrPDB                                                           26   4.3  
6GSC-A nrPDB                                                           25   5.9  
5A9G-A nrPDB                                                           25   6.1  
5XY3-e nrPDB                                                           25   7.2  


CONVERGED!
>3J1N-K nrPDB
          Length = 120

 Score =  168 bits (425), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 120/120 (100%), Positives = 120/120 (100%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60
           MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA
Sbjct: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60

Query: 61  YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLAADDAF 120
           YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLAADDAF
Sbjct: 61  YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLAADDAF 120


>6J4X-K nrPDB
          Length = 118

 Score =  158 bits (400), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 67/118 (56%), Positives = 82/118 (69%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60
           MNAPDRFELF+L +   KLKI PD++ PN ++I FE+EDHTL NL+R EL     V F A
Sbjct: 1   MNAPDRFELFILPDDVPKLKITPDSRVPNCIIIKFEREDHTLANLLREELALYPDVTFVA 60

Query: 61  YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLAADD 118
           YKVEHP FA F +R+QT EG  PK AL+ AC SIINKL  L   F  EWN++  + +D
Sbjct: 61  YKVEHPLFANFVMRLQTEEGTRPKQALERACASIINKLKTLDHKFNEEWNIKNFSLND 118


>3H0G-K nrPDB
          Length = 123

 Score =  145 bits (365), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 54/117 (46%), Positives = 75/117 (64%), Gaps = 1/117 (0%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60
           MN P+R+EL  L  G  K+  + D+K+PNA V+T EKEDHTL N++  +LL+D +VLFA 
Sbjct: 1   MNQPERYELIELM-GLPKVTYELDSKSPNAAVVTLEKEDHTLANMLANQLLSDERVLFAG 59

Query: 61  YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLAAD 117
           YKV HP    F LR+QT E   PK  + +A  S+I  L  +K NF  EW L+ ++ +
Sbjct: 60  YKVPHPLNHNFILRVQTVEDCSPKQVIVDAAKSLITHLEEIKVNFMREWELKMISVE 116


>6O9L-K nrPDB
          Length = 117

 Score =  137 bits (344), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 55/105 (52%), Positives = 72/105 (68%)

Query: 1   MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60
           MNAP  FE FLL EGE K+ I+ DTK PNA + T  KEDHTLGN+I+++LL D +VLFA 
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 61  YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNF 105
           YKV HP   +  +R+QTT  Y P++A  NA   +I++L  L+  F
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105


>6CNF-K nrPDB
          Length = 142

 Score =  102 bits (255), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 8/105 (7%)

Query: 4   PDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKV 63
           PDR ++ LL +  S    +  T A   +V    +EDHTLGN +R  ++ +  V F  Y +
Sbjct: 42  PDREKIKLLTQATS----EDGTSASFQIV----EEDHTLGNALRYVIMKNPDVEFCGYSI 93

Query: 64  EHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETE 108
            HP      +RIQT       DAL+     +++    +++ F  +
Sbjct: 94  PHPSENLLNIRIQTYGETTAVDALQKGLKDLMDLCDVVESKFTEK 138


>1XPP-A nrPDB
          Length = 115

 Score = 99.4 bits (246), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 3/96 (3%)

Query: 15  GESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLR 74
            ES L++   +K  N++ +     D+TL   +  E+L D +V  A Y ++HP     ++ 
Sbjct: 9   AESSLRVI--SKEKNSITVEMINYDNTLLRTLVEEILKDDQVDEARYYIKHPVIDNPQIY 66

Query: 75  IQTTEGYDPKDALKNACNSIINKLGALKTNFETEWN 110
           ++   G  P+ A+K A   +      L T F+ E+ 
Sbjct: 67  VRVKSG-KPQSAIKRAVRKLSKLYEDLGTQFQKEFQ 101


>2PMZ-L nrPDB
          Length = 92

 Score = 95.6 bits (236), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 37/76 (48%)

Query: 19 LKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTT 78
          ++I       N + +  E EDHTLGNLI   L     V FA+Y   HP   +  ++I T 
Sbjct: 1  MEIRILKSESNYLELEIEGEDHTLGNLIAGTLRRISGVSFASYYQPHPLSDKIIVKILTD 60

Query: 79 EGYDPKDALKNACNSI 94
              PKDAL  A  +I
Sbjct: 61 GSITPKDALLKAIENI 76


>2WB1-L nrPDB
          Length = 92

 Score = 94.4 bits (233), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 37/76 (48%)

Query: 19 LKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTT 78
          ++I       N + +  E EDHTLGNLI   L     V FA+Y   HP   +  ++I T 
Sbjct: 1  MEIKILKSESNYLELEIEGEDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVKILTD 60

Query: 79 EGYDPKDALKNACNSI 94
              PKDAL  A  ++
Sbjct: 61 GSIAPKDALLKAIETV 76


>4QJV-B nrPDB
          Length = 94

 Score = 88.7 bits (218), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 2/85 (2%)

Query: 19  LKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQ-- 76
           ++I+   +  N +    E EDHT  NL+   L  +  V FA Y +EHP     K R +  
Sbjct: 1   MRIEVIRREENLLEFYLEGEDHTFANLLTETLHENEHVTFAGYTIEHPITMARKPRFKVV 60

Query: 77  TTEGYDPKDALKNACNSIINKLGAL 101
           T     P+ AL+ A   I ++   +
Sbjct: 61  TDGKITPEKALEEAAQKIFDRAREV 85


>5ZX3-A nrPDB
          Length = 368

 Score = 28.6 bits (62), Expect = 0.58,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query: 68  FARFKLRIQTTEGYDPKDALKNACNSIINKLGALKT 103
           F +  L ++T     P+DAL +A  +++   G  + 
Sbjct: 210 FDKLILDVETKNSISPRDALASAGKTLVELFGLARE 245


>6CCE-A nrPDB
          Length = 350

 Score = 27.8 bits (60), Expect = 1.2,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 18/36 (50%)

Query: 68  FARFKLRIQTTEGYDPKDALKNACNSIINKLGALKT 103
           F +  + ++T     P+DAL +A  +++   G  + 
Sbjct: 189 FDKLIIDVETKNSISPRDALASAGGTLVELFGLARE 224


>1BCC-A nrPDB
          Length = 446

 Score = 27.4 bits (59), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 8/59 (13%)

Query: 59  AAYKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLAAD 117
           A Y +EH  F   K R        P++AL+    S+   L A  +   T + ++ L+ D
Sbjct: 55  AGYFLEHLAFKGTKNR--------PQNALEKEVESMGAHLNAYSSREHTAYYIKALSKD 105


>5GUP-L nrPDB
          Length = 377

 Score = 27.0 bits (58), Expect = 1.8,   Method: Composition-based stats.
 Identities = 5/33 (15%), Positives = 12/33 (36%)

Query: 88  KNACNSIINKLGALKTNFETEWNLQTLAADDAF 120
           K++   ++     +      EW  +    +D F
Sbjct: 113 KDSIRKVVEHSNVVINLVGREWETKNFDFEDVF 145


>1IW7-A nrPDB
          Length = 315

 Score = 26.6 bits (57), Expect = 2.4,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 12/30 (40%)

Query: 69  ARFKLRIQTTEGYDPKDALKNACNSIINKL 98
            +  LRI T     P +AL  A   +   L
Sbjct: 193 DKLTLRIWTDGSVTPLEALNQAVEILREHL 222


>3IFS-A nrPDB
          Length = 453

 Score = 26.3 bits (56), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 14/83 (16%)

Query: 35  FEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFF---------ARFKLRIQTTEGYDPKD 85
            E  +H+  N +  E     +VLF    +   +            F + + +  G   + 
Sbjct: 96  IEMLNHSFYNTLSKEQRKTPQVLFVGQNISSTYMKDLMDVLEGKDFSINVISKSGTTTEP 155

Query: 86  ALKNACNSIINKLGALKTNFETE 108
           AL      I  KL  L+  +  E
Sbjct: 156 AL---AFRIFRKL--LEEKYGKE 173


>1HQM-A nrPDB
          Length = 313

 Score = 26.3 bits (56), Expect = 3.4,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 12/31 (38%)

Query: 69  ARFKLRIQTTEGYDPKDALKNACNSIINKLG 99
            +  LRI T     P +AL  A   +   L 
Sbjct: 192 DKLTLRIWTDGSVTPLEALNQAVAILKEHLN 222


>2PLE-A nrPDB
          Length = 105

 Score = 25.9 bits (55), Expect = 4.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 13/30 (43%)

Query: 53  DRKVLFAAYKVEHPFFARFKLRIQTTEGYD 82
           D  V   +Y  +HP + + KLR    E   
Sbjct: 75  DSLVDLISYYEKHPLYRKMKLRYPINEENS 104


>6GSC-A nrPDB
          Length = 205

 Score = 25.5 bits (54), Expect = 5.9,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 11/27 (40%)

Query: 80  GYDPKDALKNACNSIINKLGALKTNFE 106
           G  P  AL+ A +     L ALK    
Sbjct: 92  GTKPSAALQKAIDETFGSLDALKEKIN 118


>5A9G-A nrPDB
          Length = 236

 Score = 25.5 bits (54), Expect = 6.1,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 11/27 (40%)

Query: 80  GYDPKDALKNACNSIINKLGALKTNFE 106
           G  P  AL+ A +     L ALK    
Sbjct: 121 GTKPSAALQKAIDETFGSLDALKEKIN 147


>5XY3-e nrPDB
          Length = 132

 Score = 25.1 bits (53), Expect = 7.2,   Method: Composition-based stats.
 Identities = 7/45 (15%), Positives = 16/45 (35%)

Query: 66  PFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWN 110
           P   +  +  +T   + P+  L N   S       + + F  ++ 
Sbjct: 4   PAEHKPIIHKKTNRFHRPQSDLWNRVPSAWRHPRGIDSRFRRKYR 48


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.310    0.127    0.318 

Lambda     K      H
   0.267   0.0390    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,880,340
Number of Sequences: 36641
Number of extensions: 116161
Number of successful extensions: 330
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 291
Number of HSP's gapped (non-prelim): 40
length of query: 120
length of database: 10,336,785
effective HSP length: 84
effective length of query: 36
effective length of database: 7,258,941
effective search space: 261321876
effective search space used: 261321876
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 52 (24.7 bits)