BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P38886 (268 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 5A5B-W nrPDB 549 e-157 6FVX-W nrPDB 403 e-113 6MSK-b nrPDB 219 8e-58 2X5N-A nrPDB 193 5e-50 5OF4-E nrPDB 40 0.001 6NMI-E nrPDB 39 0.003 3W0L-B nrPDB 30 0.77 3HV2-A nrPDB 30 1.5 1XFC-A nrPDB 29 1.9 5WLC-LH nrPDB 29 2.6 6AH0-2 nrPDB 28 3.1 1FFU-B nrPDB 28 4.3 2E0W-A nrPDB 28 5.4 2E0Y-A nrPDB 28 5.5 4RWT-C nrPDB 27 6.7 >5A5B-W nrPDB Length = 268 Score = 549 bits (1414), Expect = e-157, Method: Compositional matrix adjust. Identities = 268/268 (100%), Positives = 268/268 (100%) Query: 1 MVLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPR 60 MVLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPR Sbjct: 1 MVLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPR 60 Query: 61 VLSTFTAEFGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISD 120 VLSTFTAEFGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISD Sbjct: 61 VLSTFTAEFGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISD 120 Query: 121 SRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNNPQEETSHLLTVTPGPRL 180 SRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNNPQEETSHLLTVTPGPRL Sbjct: 121 SRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNNPQEETSHLLTVTPGPRL 180 Query: 181 LYENIASSPIILEEGSSGMGAFGGSGGDSDANGTFMDFGVDPSMDPELAMALRLSMEEEQ 240 LYENIASSPIILEEGSSGMGAFGGSGGDSDANGTFMDFGVDPSMDPELAMALRLSMEEEQ Sbjct: 181 LYENIASSPIILEEGSSGMGAFGGSGGDSDANGTFMDFGVDPSMDPELAMALRLSMEEEQ 240 Query: 241 QRQERLRQQQQQQDQPEQSEQPEQHQDK 268 QRQERLRQQQQQQDQPEQSEQPEQHQDK Sbjct: 241 QRQERLRQQQQQQDQPEQSEQPEQHQDK 268 >6FVX-W nrPDB Length = 197 Score = 403 bits (1035), Expect = e-113, Method: Compositional matrix adjust. Identities = 197/197 (100%), Positives = 197/197 (100%) Query: 1 MVLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPR 60 MVLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPR Sbjct: 1 MVLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPR 60 Query: 61 VLSTFTAEFGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISD 120 VLSTFTAEFGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISD Sbjct: 61 VLSTFTAEFGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISD 120 Query: 121 SRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNNPQEETSHLLTVTPGPRL 180 SRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNNPQEETSHLLTVTPGPRL Sbjct: 121 SRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNNPQEETSHLLTVTPGPRL 180 Query: 181 LYENIASSPIILEEGSS 197 LYENIASSPIILEEGSS Sbjct: 181 LYENIASSPIILEEGSS 197 >6MSK-b nrPDB Length = 377 Score = 219 bits (559), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 119/236 (50%), Positives = 155/236 (65%), Gaps = 12/236 (5%) Query: 1 MVLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPR 60 MVLE+T++ +DNSEY RNGDF TR +AQ D+V + +K SNPEN VGLI+ A + Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAN-DCE 59 Query: 61 VLSTFTAEFGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISD 120 VL+T T + G+IL+ LH Q +GK+ T +++A L LKHRQ K RI+AFV SP+ D Sbjct: 60 VLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVED 119 Query: 121 SRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNNPQEETSHLLTVTPGPRL 180 + +L++LAK LKK V VDIINFGE E NTE L F+ +N SHL+TV PGP Sbjct: 120 NEKDLVKLAKRLKKEKVNVDIINFGEEEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPS- 178 Query: 181 LYENIASSPIILEEGSSGMGAFGGSGGDSDANGTFMDFGVDPSMDPELAMALRLSM 236 L + + SSPI+ EG + +G G SD +FGVDPS DPELA+ALR+SM Sbjct: 179 LADALISSPILAGEGGAMLGL-----GASD-----FEFGVDPSADPELALALRVSM 224 >2X5N-A nrPDB Length = 192 Score = 193 bits (491), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 98/189 (51%), Positives = 130/189 (68%), Gaps = 3/189 (1%) Query: 2 VLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRV 61 VLEAT+++IDNSE+ NGD+ TRFEAQ D+V IF K N NPEN GL++ +P+V Sbjct: 1 VLEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQV 60 Query: 62 LSTFTAEFGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDS 121 LST T ++GK L+ +HD + G +QIAQL LKHR+NK+Q QRIVAFV SPI + Sbjct: 61 LSTLTRDYGKFLSAMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVED 120 Query: 122 RDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNNPQEETSHLLTVTPGPRLL 181 LIRLAK +KKNNVA+DII+ GE+ QN L FI A N+ ++ HL+++ P P+LL Sbjct: 121 EKNLIRLAKRMKKNNVAIDIIHIGEL-QNESALQHFIDAANS--SDSCHLVSIPPSPQLL 177 Query: 182 YENIASSPI 190 + + SPI Sbjct: 178 SDLVNQSPI 186 >5OF4-E nrPDB Length = 395 Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/157 (22%), Positives = 60/157 (38%), Gaps = 13/157 (8%) Query: 8 LVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTA 67 +V+D S + D R + +E+ + + NP + +G+I L+ + Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122 Query: 68 EFGKILAGLH---DTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAF----VCSPISD 120 K + L D G+ + +L IA TLKH + ++ F C P Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDP--- 179 Query: 121 SRDELIRLAKTLKKNNVAVDIINF-GEIEQNTELLDE 156 + L KTLK + V +I E+ T L E Sbjct: 180 --SNIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARE 214 >6NMI-E nrPDB Length = 366 Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 13/157 (8%) Query: 8 LVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTA 67 +V+D S + D R + +E+ + + NP + +G+I L+ + Sbjct: 48 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 107 Query: 68 EFGKILAGLH---DTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAF----VCSPISD 120 K + L D G+ + +L IA TLKH + ++ F C P S+ Sbjct: 108 NPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDP-SN 166 Query: 121 SRDELIRLAKTLKKNNVAVDIINF-GEIEQNTELLDE 156 D L KTLK + V +I E+ T L E Sbjct: 167 IYD----LIKTLKAAKIRVSVIGLSAEVRVCTVLARE 199 >3W0L-B nrPDB Length = 619 Score = 30.4 bits (67), Expect = 0.77, Method: Compositional matrix adjust. Identities = 12/36 (33%), Positives = 21/36 (58%) Query: 44 NPENTVGLISGAGANPRVLSTFTAEFGKILAGLHDT 79 NP++++ ++SG G + R+ F +L GLH T Sbjct: 96 NPDDSLVVLSGCGTSGRLALLLANSFNGLLKGLHKT 131 >3HV2-A nrPDB Length = 153 Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust. Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 16/99 (16%) Query: 154 LDEFIAAVNNPQEETSHLLTVTPGPRLL---YENIASSPIILEEGSSGMGAFGGSGGDSD 210 +D I+A + PQ + GP LL ++ S+ IL G + + + Sbjct: 59 VDLVISAAHLPQMD---------GPTLLARIHQQYPSTTRILLTGDPDLKLIAKAINE-- 107 Query: 211 ANGTFMDFGVDPSMDPELAMALRLSMEEEQQRQERLRQQ 249 G + P D EL +ALR ++E + +ERLR Q Sbjct: 108 --GEIYRYLSKPWDDQELLLALRQALEHQHSERERLRLQ 144 >1XFC-A nrPDB Length = 384 Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 22/48 (45%) Query: 219 GVDPSMDPELAMALRLSMEEEQQRQERLRQQQQQQDQPEQSEQPEQHQ 266 GV P+ P + ALR +M E+ R L D+P+ S Q Q Sbjct: 142 GVGPAQFPAMLTALRQAMAEDAVRLRGLMSHMVYADKPDDSINDVQAQ 189 >5WLC-LH nrPDB Length = 896 Score = 28.9 bits (63), Expect = 2.6, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query: 124 ELIRLAKTLK-KNNVAVDIINFGEIEQNTELLDEFIAAVNNPQEETSHLLTV 174 E + KTLK NN + I E E N ++ + + PQ+E +HL+TV Sbjct: 58 ETRQCVKTLKFANNSLLSGIFLQEEENNESIVKILLGDITVPQQEDAHLITV 109 >6AH0-2 nrPDB Length = 895 Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust. Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 7/97 (7%) Query: 161 VNNPQEETSHLLTVTP-GPRLLYE--NIASSPIILEEGSSGMGAFGGSGGDSDANGTFMD 217 V P ++ + TP GPR+ + +P +L G+ G D N MD Sbjct: 203 VPRPPQDMGQIGVRTPLGPRVAAPVGPVGPTPTVLPMGAPVPRPRGPPPPPGDENRE-MD 261 Query: 218 FGVDPSMDPELAMALRLSMEEEQQRQERLRQQQQQQD 254 DPS+ P++ AL ++ ++ RQE + QQ++++ Sbjct: 262 ---DPSVGPKIPQALEKILQLKESRQEEMNSQQEEEE 295 >1FFU-B nrPDB Length = 803 Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%) Query: 145 GEIEQNTELLDEFI-AAVNNPQEETSHLLTVTPGPRLLYENIASSP 189 G + NT L+D F+ AV P ET H +T +P + + +A SP Sbjct: 715 GNLLGNT-LMDYFLPTAVETPHWETDHTVTPSPHHPIGAKGVAESP 759 >2E0W-A nrPDB Length = 556 Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 37/97 (38%), Gaps = 10/97 (10%) Query: 88 ATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDEL----IRLAKTLKKNNVAVDIIN 143 ATA Q+ LK N V V + + L L ++ N A+D Sbjct: 32 ATATQVGVDILKEGGNAVDAAVAVGYALAVTHPQAGNLGGGGFMLIRSKNGNTTAID--- 88 Query: 144 FGEIEQNTELLDEFIAAVNNPQEE---TSHLLTVTPG 177 F E+ D F+ NP + TSHL + TPG Sbjct: 89 FREMAPAKATRDMFLDDQGNPDSKKSLTSHLASGTPG 125 >2E0Y-A nrPDB Length = 366 Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 37/97 (38%), Gaps = 10/97 (10%) Query: 88 ATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDEL----IRLAKTLKKNNVAVDIIN 143 ATA Q+ LK N V V + + L L ++ N A+D Sbjct: 32 ATATQVGVDILKEGGNAVDAAVAVGYALAVTHPQAGNLGGGGFMLIRSKNGNTTAID--- 88 Query: 144 FGEIEQNTELLDEFIAAVNNPQEE---TSHLLTVTPG 177 F E+ D F+ NP + TSHL + TPG Sbjct: 89 FREMAPAKATRDMFLDDQGNPDSKKSLTSHLASGTPG 125 >4RWT-C nrPDB Length = 506 Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust. Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%) Query: 212 NGTFMDFGVDPSM-DPELAMALRLSMEEEQQRQERLRQQQQQQ 253 N T + G + P ++M L+ ++QRQ+RL++Q+QQ+ Sbjct: 304 NTTLLRLGYHFELPGPRMSMTSILTRNMDKQRQKRLQEQKQQE 346 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 5A5B-W nrPDB 409 e-115 6MSK-b nrPDB 319 6e-88 6FVX-W nrPDB 290 3e-79 2X5N-A nrPDB 273 5e-74 5OF4-E nrPDB 189 1e-48 Sequences not found previously or not previously below threshold: 6NMI-E nrPDB 189 1e-48 5OQJ-6 nrPDB 90 9e-19 6AH0-2 nrPDB 32 0.19 5VEU-A nrPDB 31 0.49 5F1Q-A nrPDB 31 0.51 3HV2-A nrPDB 30 0.89 1XFC-A nrPDB 30 1.1 4I6J-B nrPDB 29 2.5 4RWT-C nrPDB 28 3.8 2O61-A nrPDB 28 4.4 1IKN-A nrPDB 28 4.7 1MY7-A nrPDB 28 5.0 4GYK-A nrPDB 28 5.2 4RMF-A nrPDB 28 5.6 1K3Z-A nrPDB 28 5.7 4M9Q-A nrPDB 27 6.8 2Y8V-A nrPDB 27 7.4 >5A5B-W nrPDB Length = 268 Score = 409 bits (1051), Expect = e-115, Method: Composition-based stats. Identities = 268/268 (100%), Positives = 268/268 (100%) Query: 1 MVLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPR 60 MVLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPR Sbjct: 1 MVLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPR 60 Query: 61 VLSTFTAEFGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISD 120 VLSTFTAEFGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISD Sbjct: 61 VLSTFTAEFGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISD 120 Query: 121 SRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNNPQEETSHLLTVTPGPRL 180 SRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNNPQEETSHLLTVTPGPRL Sbjct: 121 SRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNNPQEETSHLLTVTPGPRL 180 Query: 181 LYENIASSPIILEEGSSGMGAFGGSGGDSDANGTFMDFGVDPSMDPELAMALRLSMEEEQ 240 LYENIASSPIILEEGSSGMGAFGGSGGDSDANGTFMDFGVDPSMDPELAMALRLSMEEEQ Sbjct: 181 LYENIASSPIILEEGSSGMGAFGGSGGDSDANGTFMDFGVDPSMDPELAMALRLSMEEEQ 240 Query: 241 QRQERLRQQQQQQDQPEQSEQPEQHQDK 268 QRQERLRQQQQQQDQPEQSEQPEQHQDK Sbjct: 241 QRQERLRQQQQQQDQPEQSEQPEQHQDK 268 >6MSK-b nrPDB Length = 377 Score = 319 bits (818), Expect = 6e-88, Method: Composition-based stats. Identities = 119/236 (50%), Positives = 155/236 (65%), Gaps = 12/236 (5%) Query: 1 MVLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPR 60 MVLE+T++ +DNSEY RNGDF TR +AQ D+V + +K SNPEN VGLI+ A + Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAN-DCE 59 Query: 61 VLSTFTAEFGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISD 120 VL+T T + G+IL+ LH Q +GK+ T +++A L LKHRQ K RI+AFV SP+ D Sbjct: 60 VLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVED 119 Query: 121 SRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNNPQEETSHLLTVTPGPRL 180 + +L++LAK LKK V VDIINFGE E NTE L F+ +N SHL+TV PGP Sbjct: 120 NEKDLVKLAKRLKKEKVNVDIINFGEEEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPS- 178 Query: 181 LYENIASSPIILEEGSSGMGAFGGSGGDSDANGTFMDFGVDPSMDPELAMALRLSM 236 L + + SSPI+ EG + +G G SD +FGVDPS DPELA+ALR+SM Sbjct: 179 LADALISSPILAGEGGAMLGL-----GASD-----FEFGVDPSADPELALALRVSM 224 >6FVX-W nrPDB Length = 197 Score = 290 bits (743), Expect = 3e-79, Method: Composition-based stats. Identities = 197/197 (100%), Positives = 197/197 (100%) Query: 1 MVLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPR 60 MVLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPR Sbjct: 1 MVLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPR 60 Query: 61 VLSTFTAEFGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISD 120 VLSTFTAEFGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISD Sbjct: 61 VLSTFTAEFGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISD 120 Query: 121 SRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNNPQEETSHLLTVTPGPRL 180 SRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNNPQEETSHLLTVTPGPRL Sbjct: 121 SRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNNPQEETSHLLTVTPGPRL 180 Query: 181 LYENIASSPIILEEGSS 197 LYENIASSPIILEEGSS Sbjct: 181 LYENIASSPIILEEGSS 197 >2X5N-A nrPDB Length = 192 Score = 273 bits (698), Expect = 5e-74, Method: Composition-based stats. Identities = 98/189 (51%), Positives = 130/189 (68%), Gaps = 3/189 (1%) Query: 2 VLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRV 61 VLEAT+++IDNSE+ NGD+ TRFEAQ D+V IF K N NPEN GL++ +P+V Sbjct: 1 VLEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQV 60 Query: 62 LSTFTAEFGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDS 121 LST T ++GK L+ +HD + G +QIAQL LKHR+NK+Q QRIVAFV SPI + Sbjct: 61 LSTLTRDYGKFLSAMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVED 120 Query: 122 RDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNNPQEETSHLLTVTPGPRLL 181 LIRLAK +KKNNVA+DII+ GE+ QN L FI A N+ ++ HL+++ P P+LL Sbjct: 121 EKNLIRLAKRMKKNNVAIDIIHIGEL-QNESALQHFIDAANS--SDSCHLVSIPPSPQLL 177 Query: 182 YENIASSPI 190 + + SPI Sbjct: 178 SDLVNQSPI 186 >6NMI-E nrPDB Length = 366 Score = 189 bits (480), Expect = 1e-48, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 60/157 (38%), Gaps = 13/157 (8%) Query: 8 LVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTA 67 +V+D S + D R + +E+ + + NP + +G+I L+ + Sbjct: 48 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 107 Query: 68 EFGKILAGLH---DTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAF----VCSPISD 120 K + L D G+ + +L IA TLKH + ++ F C P Sbjct: 108 NPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDP--- 164 Query: 121 SRDELIRLAKTLKKNNVAVDIINF-GEIEQNTELLDE 156 + L KTLK + V +I E+ T L E Sbjct: 165 --SNIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARE 199 >5OF4-E nrPDB Length = 395 Score = 189 bits (480), Expect = 1e-48, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 60/157 (38%), Gaps = 13/157 (8%) Query: 8 LVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTA 67 +V+D S + D R + +E+ + + NP + +G+I L+ + Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122 Query: 68 EFGKILAGLH---DTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAF----VCSPISD 120 K + L D G+ + +L IA TLKH + ++ F C P Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDP--- 179 Query: 121 SRDELIRLAKTLKKNNVAVDIINF-GEIEQNTELLDE 156 + L KTLK + V +I E+ T L E Sbjct: 180 --SNIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARE 214 >5OQJ-6 nrPDB Length = 461 Score = 90.2 bits (222), Expect = 9e-19, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 57/159 (35%), Gaps = 5/159 (3%) Query: 2 VLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRV 61 ++ + +L +D SE D R I + NP + +G+I ++ Sbjct: 122 IIRSLILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQL 181 Query: 62 LSTFTAEFGKILAGLHDT---QIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPI 118 +S + + L + +G + AL++A+ L + ++ F S Sbjct: 182 VSQVSGNPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVF-GSLS 240 Query: 119 SDSRDELIRLAKTLKKNNVAVDIINF-GEIEQNTELLDE 156 + ++ + +L + V ++ ++ EL Sbjct: 241 TTDPGDIHQTIDSLVSEKIRVKVLGLSAQVAICKELCKA 279 >6AH0-2 nrPDB Length = 895 Score = 32.4 bits (72), Expect = 0.19, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 6/111 (5%) Query: 146 EIEQNTELLDEFIAAVNNPQEETSHLLTVTPGPRLLYEN--IASSPIILEEGSSGMGAFG 203 E E+ E+ PQ+ + GPR+ + +P +L G+ G Sbjct: 189 EQERQQEIAKMGTPVPRPPQDMGQIGVRTPLGPRVAAPVGPVGPTPTVLPMGAPVPRPRG 248 Query: 204 GSGGDSDANGTFMDFGVDPSMDPELAMALRLSMEEEQQRQERLRQQQQQQD 254 D N MD DPS+ P++ AL ++ ++ RQE + QQ++++ Sbjct: 249 PPPPPGDENRE-MD---DPSVGPKIPQALEKILQLKESRQEEMNSQQEEEE 295 >5VEU-A nrPDB Length = 480 Score = 31.2 bits (69), Expect = 0.49, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 4/65 (6%) Query: 11 DNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVG----LISGAGANPRVLSTFT 66 D ++ +F RF + DS++ + P N +G L++ A RVL F+ Sbjct: 383 DPKYWTEPEEFRPERFSKKKDSIDPYIYTPFGTGPRNCIGMRFALMNMKLALIRVLQNFS 442 Query: 67 AEFGK 71 + K Sbjct: 443 FKPCK 447 >5F1Q-A nrPDB Length = 543 Score = 31.2 bits (69), Expect = 0.51, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 18/44 (40%) Query: 6 TVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTV 49 T + ++ N DF TR D + + K + NP + V Sbjct: 92 TFYLRKGVKWQDNKDFKPTRDFNADDVIYSFMRQKDDKNPYHKV 135 >3HV2-A nrPDB Length = 153 Score = 30.5 bits (67), Expect = 0.89, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 21/39 (53%) Query: 213 GTFMDFGVDPSMDPELAMALRLSMEEEQQRQERLRQQQQ 251 G + P D EL +ALR ++E + +ERLR Q + Sbjct: 108 GEIYRYLSKPWDDQELLLALRQALEHQHSERERLRLQDE 146 >1XFC-A nrPDB Length = 384 Score = 30.1 bits (66), Expect = 1.1, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 22/48 (45%) Query: 219 GVDPSMDPELAMALRLSMEEEQQRQERLRQQQQQQDQPEQSEQPEQHQ 266 GV P+ P + ALR +M E+ R L D+P+ S Q Q Sbjct: 142 GVGPAQFPAMLTALRQAMAEDAVRLRGLMSHMVYADKPDDSINDVQAQ 189 >4I6J-B nrPDB Length = 428 Score = 28.9 bits (63), Expect = 2.5, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 4/84 (4%) Query: 86 HMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKKNNVAVDIINFG 145 H+ +++ L + + + +ELIR+A+ K + I G Sbjct: 312 HLYFGRSVSKDVLGRVGMTCPRLVELVVCANGLRPLDEELIRIAERCK----NLSAIGLG 367 Query: 146 EIEQNTELLDEFIAAVNNPQEETS 169 E E + EF+ + S Sbjct: 368 ECEVSCSAFVEFVKMCGGRLSQLS 391 >4RWT-C nrPDB Length = 506 Score = 28.2 bits (61), Expect = 3.8, Method: Composition-based stats. Identities = 11/28 (39%), Positives = 21/28 (75%) Query: 226 PELAMALRLSMEEEQQRQERLRQQQQQQ 253 P ++M L+ ++QRQ+RL++Q+QQ+ Sbjct: 319 PRMSMTSILTRNMDKQRQKRLQEQKQQE 346 >2O61-A nrPDB Length = 540 Score = 28.2 bits (61), Expect = 4.4, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 28/78 (35%) Query: 180 LLYENIASSPIILEEGSSGMGAFGGSGGDSDANGTFMDFGVDPSMDPELAMALRLSMEEE 239 LL + + I + G A G + F P DP L +R+SM+ Sbjct: 197 LLCDKVQKEDIEVYFTGPGWEARGSFSQADVHRQVAIVFRTPPYADPSLQAPVRVSMQLR 256 Query: 240 QQRQERLRQQQQQQDQPE 257 + L + + Q P+ Sbjct: 257 RPSDRELSEPMEFQYLPD 274 >1IKN-A nrPDB Length = 286 Score = 27.8 bits (60), Expect = 4.7, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 30/82 (36%) Query: 180 LLYENIASSPIILEEGSSGMGAFGGSGGDSDANGTFMDFGVDPSMDPELAMALRLSMEEE 239 LL + + I + G A G + F P DP L +R+SM+ Sbjct: 196 LLCDKVQKEDIEVYFTGPGWEARGSFSQADVHRQVAIVFRTPPYADPSLQAPVRVSMQLR 255 Query: 240 QQRQERLRQQQQQQDQPEQSEQ 261 + L + + Q P+ ++ Sbjct: 256 RPSDRELSEPMEFQYLPDTDDR 277 >1MY7-A nrPDB Length = 114 Score = 27.8 bits (60), Expect = 5.0, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 30/82 (36%) Query: 180 LLYENIASSPIILEEGSSGMGAFGGSGGDSDANGTFMDFGVDPSMDPELAMALRLSMEEE 239 LL + + I + G A G + F P DP L +R+SM+ Sbjct: 24 LLCDKVQKEDIEVYFTGPGWEARGSFSQADVHRQVAIVFRTPPYADPSLQAPVRVSMQLR 83 Query: 240 QQRQERLRQQQQQQDQPEQSEQ 261 + L + + Q P+ ++ Sbjct: 84 RPSDRELSEPMEFQYLPDTDDR 105 >4GYK-A nrPDB Length = 648 Score = 27.8 bits (60), Expect = 5.2, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 24/64 (37%) Query: 89 TALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKKNNVAVDIINFGEIE 148 T L+ Q TL + K IVA + + L K K V++ +NF Sbjct: 440 TVLKNEQHTLPFKPKKGSRILIVAPYEEQTASIEQTIHDLIKRKKIKPVSLSKMNFASQV 499 Query: 149 QNTE 152 TE Sbjct: 500 FKTE 503 >4RMF-A nrPDB Length = 609 Score = 27.8 bits (60), Expect = 5.6, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 20/44 (45%) Query: 58 NPRVLSTFTAEFGKILAGLHDTQIEGKLHMATALQIAQLTLKHR 101 P + TF ++ G L+ +D G +++I + ++ R Sbjct: 455 KPDSVDTFDSDPGNALSDAYDIVCNGNEIGGGSIRIHRRDIQER 498 >1K3Z-A nrPDB Length = 136 Score = 27.8 bits (60), Expect = 5.7, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 30/82 (36%) Query: 180 LLYENIASSPIILEEGSSGMGAFGGSGGDSDANGTFMDFGVDPSMDPELAMALRLSMEEE 239 LL + + I + G A G + F P DP L +R+SM+ Sbjct: 24 LLCDKVQKEDIEVYFTGPGWEARGSFSQADVHRQVAIVFRTPPYADPSLQAPVRVSMQLR 83 Query: 240 QQRQERLRQQQQQQDQPEQSEQ 261 + L + + Q P+ ++ Sbjct: 84 RPSDRELSEPMEFQYLPDTDDR 105 >4M9Q-A nrPDB Length = 227 Score = 27.4 bits (59), Expect = 6.8, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 25/38 (65%), Gaps = 1/38 (2%) Query: 217 DFG-VDPSMDPELAMALRLSMEEEQQRQERLRQQQQQQ 253 +FG +DP + E + ++++R+ERLR+Q++++ Sbjct: 172 EFGRLDPRVQTEAEEVRQEEARKKKEREERLRKQREER 209 >2Y8V-A nrPDB Length = 290 Score = 27.4 bits (59), Expect = 7.4, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 40/113 (35%), Gaps = 17/113 (15%) Query: 140 DIINFGEIEQNTELLDEFIAAVNNPQEETSHLL--TVTPGPRLLYENIASSPIILEEGSS 197 D ++ + +N + I A + E+ H+ P + A P++ G Sbjct: 28 DYVSVLPLVKNNTGVTHIIIAAFHLNEDPGHITLNDDPPDHEMYNPLWAEVPVLKRSGVK 87 Query: 198 GMGAFGGSGGDS----DANGTFMDFGVDPSMDPELAMALR-------LSMEEE 239 MG GG+ S D + + P LAM R L +EEE Sbjct: 88 VMGMLGGAAQGSYRCLDGDQEKFE----RYYQPLLAMVRRHQLDGLDLDVEEE 136 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.312 0.129 0.328 Lambda K H 0.267 0.0393 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,096,060 Number of Sequences: 36641 Number of extensions: 335666 Number of successful extensions: 1371 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 21 Number of HSP's that attempted gapping in prelim test: 1035 Number of HSP's gapped (non-prelim): 180 length of query: 268 length of database: 10,336,785 effective HSP length: 95 effective length of query: 173 effective length of database: 6,855,890 effective search space: 1186068970 effective search space used: 1186068970 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 58 (27.0 bits)