BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P38789 (453 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 6C0F-v nrPDB 922 0.0 4ELJ-A nrPDB 31 1.00 5WRO-A nrPDB 30 1.7 5K1B-B nrPDB 30 2.1 6CB1-b nrPDB 29 4.9 6EM4-A nrPDB 28 5.8 5OQL-K nrPDB 28 7.6 >6C0F-v nrPDB Length = 453 Score = 922 bits (2384), Expect = 0.0, Method: Compositional matrix adjust. Identities = 453/453 (100%), Positives = 453/453 (100%) Query: 1 MAKRRQKKRTHAQLTPEQEQGIPKSMVIRVGQTSLANHSLNQLVKDFRQIMQPHTAIKLK 60 MAKRRQKKRTHAQLTPEQEQGIPKSMVIRVGQTSLANHSLNQLVKDFRQIMQPHTAIKLK Sbjct: 1 MAKRRQKKRTHAQLTPEQEQGIPKSMVIRVGQTSLANHSLNQLVKDFRQIMQPHTAIKLK 60 Query: 61 ERKSNKLKDFVVMCGPLGVTHLFMFTQSEKTGNVSLKIARTPQGPTVTFQVLDYSLGRDI 120 ERKSNKLKDFVVMCGPLGVTHLFMFTQSEKTGNVSLKIARTPQGPTVTFQVLDYSLGRDI Sbjct: 61 ERKSNKLKDFVVMCGPLGVTHLFMFTQSEKTGNVSLKIARTPQGPTVTFQVLDYSLGRDI 120 Query: 121 KKFLKRPKSLNNDDVLNPPLLVLNGFSTSKRSGEDDQDVNVEKVIVSMFQNIFPPLNPAR 180 KKFLKRPKSLNNDDVLNPPLLVLNGFSTSKRSGEDDQDVNVEKVIVSMFQNIFPPLNPAR Sbjct: 121 KKFLKRPKSLNNDDVLNPPLLVLNGFSTSKRSGEDDQDVNVEKVIVSMFQNIFPPLNPAR 180 Query: 181 TSLNSIKRVFMINKDRETGEISMRHYFIDIREVEISRNLKRLYKAKNNLSKTVPNLHRKE 240 TSLNSIKRVFMINKDRETGEISMRHYFIDIREVEISRNLKRLYKAKNNLSKTVPNLHRKE Sbjct: 181 TSLNSIKRVFMINKDRETGEISMRHYFIDIREVEISRNLKRLYKAKNNLSKTVPNLHRKE 240 Query: 241 DISSLILDHDLGAYTSESEIEDDAIVRVVDNQDVKAKHSQSLKSQRTPVEKKDNKEREKE 300 DISSLILDHDLGAYTSESEIEDDAIVRVVDNQDVKAKHSQSLKSQRTPVEKKDNKEREKE Sbjct: 241 DISSLILDHDLGAYTSESEIEDDAIVRVVDNQDVKAKHSQSLKSQRTPVEKKDNKEREKE 300 Query: 301 TEEEDVEMEEPKPSENLQPTPRKKAIKLTELGPRLTLKLVKIEEGICSGKVLHHEFVQKS 360 TEEEDVEMEEPKPSENLQPTPRKKAIKLTELGPRLTLKLVKIEEGICSGKVLHHEFVQKS Sbjct: 301 TEEEDVEMEEPKPSENLQPTPRKKAIKLTELGPRLTLKLVKIEEGICSGKVLHHEFVQKS 360 Query: 361 SEEIKALEKRHAAKMRLKEQRKKEQEENIAKKKAVKDAKKQRKLERRKARAAEGGEGQGK 420 SEEIKALEKRHAAKMRLKEQRKKEQEENIAKKKAVKDAKKQRKLERRKARAAEGGEGQGK Sbjct: 361 SEEIKALEKRHAAKMRLKEQRKKEQEENIAKKKAVKDAKKQRKLERRKARAAEGGEGQGK 420 Query: 421 DDAMSDDESSSSDSEHYGSVPEDLDSDLFSEVE 453 DDAMSDDESSSSDSEHYGSVPEDLDSDLFSEVE Sbjct: 421 DDAMSDDESSSSDSEHYGSVPEDLDSDLFSEVE 453 >4ELJ-A nrPDB Length = 656 Score = 31.2 bits (69), Expect = 1.00, Method: Compositional matrix adjust. Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 21/76 (27%) Query: 119 DIKKFLKRPKSLNNDDVLNPPLLVLNGFSTSK--RSGEDDQDVNVEKVIVSMFQNIFPPL 176 D + FL K+L D + + F T + R D++VNV PP Sbjct: 260 DARLFLDHDKTLQTDSI--------DSFETQRTPRKSNLDEEVNV-----------IPPH 300 Query: 177 NPARTSLNSIKRVFMI 192 P RT +N+I+++ MI Sbjct: 301 TPVRTVMNTIQQLMMI 316 >5WRO-A nrPDB Length = 439 Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 12/110 (10%) Query: 214 EISRNLKRLYKAKNNLSKTV--------PNLHRKEDISSLILDHDLGA-YTSESEIEDDA 264 E+ +LK + KAK L T PN+ ++ +LI D A YT + EI D Sbjct: 193 EVYHHLKNVIKAKFGLDATAVGDEGGFAPNIQSNKEALNLISDAIAKAGYTGKIEIGMDV 252 Query: 265 IVRVV--DNQ-DVKAKHSQSLKSQRTPVEKKDNKEREKETEEEDVEMEEP 311 D Q D+ K+ +S KSQ P +K N +E + V +E+P Sbjct: 253 AASEFYKDGQYDLDFKNEKSDKSQWLPADKLANLYQEFIKDFPIVSIEDP 302 >5K1B-B nrPDB Length = 677 Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust. Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Query: 174 PPLNPARTS-LNSIKRVFMINKDRETGEI-SMRHYFIDIREVEISRNLKRLYKAKNNLSK 231 P LN T+ +SI R++ +N+ ++ I SM H+ + ++ + N K L A ++ + Sbjct: 40 PALNRLFTAGRDSIIRIWSVNQHKQDPYIASMEHHTDWVNDIVLCCNGKTLISASSDTTV 99 Query: 232 TVPNLHRKEDISSL 245 V N H+ +S+L Sbjct: 100 KVWNAHKGFCMSTL 113 >6CB1-b nrPDB Length = 291 Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 16/82 (19%) Query: 326 IKLTELGPRLTLKLVKIEEGICSGKVLHHEFVQKSSEEIKALEKRHAAKMRLKEQRKKEQ 385 I L E+GPR + ++ I EG G ++ E K + + ++K+Q +E Sbjct: 210 ISLVEIGPRFVMTVILILEGSFGGPKIY---------ENKQYVSPNVVRAQIKQQAAEE- 259 Query: 386 EENIAKKKAVKDAKKQRKLERR 407 AK +A +A +RK++RR Sbjct: 260 ----AKSRA--EAAVERKIKRR 275 >6EM4-A nrPDB Length = 291 Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 16/82 (19%) Query: 326 IKLTELGPRLTLKLVKIEEGICSGKVLHHEFVQKSSEEIKALEKRHAAKMRLKEQRKKEQ 385 I L E+GPR + ++ I EG G ++ E K + + ++K+Q +E Sbjct: 210 ISLVEIGPRFVMTVILILEGSFGGPKIY---------ENKQYVSPNVVRAQIKQQAAEE- 259 Query: 386 EENIAKKKAVKDAKKQRKLERR 407 AK +A +A +RK++RR Sbjct: 260 ----AKSRA--EAAVERKIKRR 275 >5OQL-K nrPDB Length = 938 Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 13/79 (16%) Query: 211 REVEI-SRNLKRLYKAKNNLSKTVPNLHRKEDISSLILDHDLGAYTS-------ESEIED 262 RE E+ SR + RL + K SKT +HRKE +L ++ AY + +SE E Sbjct: 416 RERELHSREMARLKRIKKIKSKTWRRIHRKE-----LLKNEEAAYQAALEAGELDSEEER 470 Query: 263 DAIVRVVDNQDVKAKHSQS 281 +A+ R + V A+H +S Sbjct: 471 EALDRRRALERVGARHKES 489 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 6C0F-v nrPDB 860 0.0 Sequences not found previously or not previously below threshold: 4RM9-A nrPDB 36 0.034 4ELJ-A nrPDB 35 0.063 3JCT-v nrPDB 34 0.12 1F5N-A nrPDB 34 0.17 5WRO-A nrPDB 33 0.28 6EM4-A nrPDB 32 0.74 6G18-t nrPDB 32 0.77 6CB1-b nrPDB 31 0.90 5N9J-E nrPDB 31 1.2 4OFZ-A nrPDB 31 1.3 3EUH-A nrPDB 30 1.7 6CNC-N nrPDB 30 2.9 5OQL-K nrPDB 29 4.0 4V3P-LT nrPDB 29 4.4 3BGW-A nrPDB 29 6.5 6HKW-A nrPDB 28 9.0 6EM3-J nrPDB 28 9.8 3BH0-A nrPDB 28 10.0 CONVERGED! >6C0F-v nrPDB Length = 453 Score = 860 bits (2223), Expect = 0.0, Method: Composition-based stats. Identities = 453/453 (100%), Positives = 453/453 (100%) Query: 1 MAKRRQKKRTHAQLTPEQEQGIPKSMVIRVGQTSLANHSLNQLVKDFRQIMQPHTAIKLK 60 MAKRRQKKRTHAQLTPEQEQGIPKSMVIRVGQTSLANHSLNQLVKDFRQIMQPHTAIKLK Sbjct: 1 MAKRRQKKRTHAQLTPEQEQGIPKSMVIRVGQTSLANHSLNQLVKDFRQIMQPHTAIKLK 60 Query: 61 ERKSNKLKDFVVMCGPLGVTHLFMFTQSEKTGNVSLKIARTPQGPTVTFQVLDYSLGRDI 120 ERKSNKLKDFVVMCGPLGVTHLFMFTQSEKTGNVSLKIARTPQGPTVTFQVLDYSLGRDI Sbjct: 61 ERKSNKLKDFVVMCGPLGVTHLFMFTQSEKTGNVSLKIARTPQGPTVTFQVLDYSLGRDI 120 Query: 121 KKFLKRPKSLNNDDVLNPPLLVLNGFSTSKRSGEDDQDVNVEKVIVSMFQNIFPPLNPAR 180 KKFLKRPKSLNNDDVLNPPLLVLNGFSTSKRSGEDDQDVNVEKVIVSMFQNIFPPLNPAR Sbjct: 121 KKFLKRPKSLNNDDVLNPPLLVLNGFSTSKRSGEDDQDVNVEKVIVSMFQNIFPPLNPAR 180 Query: 181 TSLNSIKRVFMINKDRETGEISMRHYFIDIREVEISRNLKRLYKAKNNLSKTVPNLHRKE 240 TSLNSIKRVFMINKDRETGEISMRHYFIDIREVEISRNLKRLYKAKNNLSKTVPNLHRKE Sbjct: 181 TSLNSIKRVFMINKDRETGEISMRHYFIDIREVEISRNLKRLYKAKNNLSKTVPNLHRKE 240 Query: 241 DISSLILDHDLGAYTSESEIEDDAIVRVVDNQDVKAKHSQSLKSQRTPVEKKDNKEREKE 300 DISSLILDHDLGAYTSESEIEDDAIVRVVDNQDVKAKHSQSLKSQRTPVEKKDNKEREKE Sbjct: 241 DISSLILDHDLGAYTSESEIEDDAIVRVVDNQDVKAKHSQSLKSQRTPVEKKDNKEREKE 300 Query: 301 TEEEDVEMEEPKPSENLQPTPRKKAIKLTELGPRLTLKLVKIEEGICSGKVLHHEFVQKS 360 TEEEDVEMEEPKPSENLQPTPRKKAIKLTELGPRLTLKLVKIEEGICSGKVLHHEFVQKS Sbjct: 301 TEEEDVEMEEPKPSENLQPTPRKKAIKLTELGPRLTLKLVKIEEGICSGKVLHHEFVQKS 360 Query: 361 SEEIKALEKRHAAKMRLKEQRKKEQEENIAKKKAVKDAKKQRKLERRKARAAEGGEGQGK 420 SEEIKALEKRHAAKMRLKEQRKKEQEENIAKKKAVKDAKKQRKLERRKARAAEGGEGQGK Sbjct: 361 SEEIKALEKRHAAKMRLKEQRKKEQEENIAKKKAVKDAKKQRKLERRKARAAEGGEGQGK 420 Query: 421 DDAMSDDESSSSDSEHYGSVPEDLDSDLFSEVE 453 DDAMSDDESSSSDSEHYGSVPEDLDSDLFSEVE Sbjct: 421 DDAMSDDESSSSDSEHYGSVPEDLDSDLFSEVE 453 >4RM9-A nrPDB Length = 587 Score = 35.9 bits (81), Expect = 0.034, Method: Composition-based stats. Identities = 45/181 (24%), Positives = 73/181 (40%), Gaps = 20/181 (11%) Query: 262 DDAIVRVVDNQDVKAKHSQSLKSQRTPVEKKDNKEREKETEEEDVEMEEPKPSENLQPTP 321 D V+ + Q + KH + L+ Q+ EKK + E+E E+ E EE LQ Sbjct: 299 DTIEVQQMKAQAREEKHQKQLERQQLETEKKRRETVEREKEQMMREKEELM--LRLQDYE 356 Query: 322 RKKAIKLTELGPRLTLKLVKIEEGICSGKVLHHEFVQKSSEEIKALEKRHAAKMRLKEQR 381 K EL ++ L EE +++ EE + LE A +R KE+ Sbjct: 357 EKTKKAERELSEQIQRALQLEEER------------KRAQEEAERLEADRMAALRAKEEL 404 Query: 382 KKE------QEENIAKKKAVKDAKKQRKLERRKARAAEGGEGQGKDDAMSDDESSSSDSE 435 +++ +E +A + A AK E R+ + E E Q + DD + + Sbjct: 405 ERQAVDQIKSQEQLAAELAEYTAKIALLEEARRRKEDEVEEWQHRAKEAQDDLVKTKEEL 464 Query: 436 H 436 H Sbjct: 465 H 465 >4ELJ-A nrPDB Length = 656 Score = 35.1 bits (79), Expect = 0.063, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 17/74 (22%) Query: 119 DIKKFLKRPKSLNNDDVLNPPLLVLNGFSTSKRSGEDDQDVNVEKVIVSMFQNIFPPLNP 178 D + FL K+L D + + F T + + + D V N+ PP P Sbjct: 260 DARLFLDHDKTLQTDSI--------DSFETQRTPRKSNLDEEV---------NVIPPHTP 302 Query: 179 ARTSLNSIKRVFMI 192 RT +N+I+++ MI Sbjct: 303 VRTVMNTIQQLMMI 316 >3JCT-v nrPDB Length = 344 Score = 34.3 bits (77), Expect = 0.12, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 9/121 (7%) Query: 318 QPTPRKKAIKLTELGPRLTLKLVKIEEGICSGKVLHHEFVQKSSEEIKALEKRHAAKMRL 377 Q R I+L E+GPRL K+ +I + V ++ ++ K LE + + L Sbjct: 213 QGGKRLPRIELVEIGPRLDFKIGRIH-------TPSPDMVTEAHKKPKQLEMKTKKNVEL 265 Query: 378 KEQRKKEQEENIAKKKAVK-DAKKQRKLERRKARAAEGGEGQGKDDAMSDDESSSSDSEH 436 K ++ K+ K +K + L+ + + E G+G+ +D D+ S S D + Sbjct: 266 DIMGDKLGRIHMGKQDLGKLQTRKMKGLKSKFDQGTEEGDGEVDED-YEDEASYSDDGQE 324 Query: 437 Y 437 Y Sbjct: 325 Y 325 >1F5N-A nrPDB Length = 592 Score = 33.6 bits (75), Expect = 0.17, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 29/148 (19%) Query: 289 VEKKDNKEREKETEEEDVEMEEPKPSENLQPTPRKKAIKLTELGPRLTLKLVKIEEGICS 348 ++KK +E K + E++ K E++ + LTE + ++ VK E S Sbjct: 443 LKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQAS 502 Query: 349 GKVLHH---------EFVQKSSEE----------------IKALEKRHAAKMRLKEQRKK 383 K+LH E ++S +E +K E+ A K++ +EQ K Sbjct: 503 AKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLK 562 Query: 384 E--QEENIAKKKAVKDAKKQRKLERRKA 409 E Q+E+ K ++D Q K+ RRKA Sbjct: 563 EGFQKESRIMKNEIQDL--QTKMRRRKA 588 >5WRO-A nrPDB Length = 439 Score = 33.2 bits (74), Expect = 0.28, Method: Composition-based stats. Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 12/110 (10%) Query: 214 EISRNLKRLYKAKNNLSKTV--------PNLHRKEDISSLILDHDLGA-YTSESEIEDDA 264 E+ +LK + KAK L T PN+ ++ +LI D A YT + EI D Sbjct: 193 EVYHHLKNVIKAKFGLDATAVGDEGGFAPNIQSNKEALNLISDAIAKAGYTGKIEIGMDV 252 Query: 265 IVRVV--DNQ-DVKAKHSQSLKSQRTPVEKKDNKEREKETEEEDVEMEEP 311 D Q D+ K+ +S KSQ P +K N +E + V +E+P Sbjct: 253 AASEFYKDGQYDLDFKNEKSDKSQWLPADKLANLYQEFIKDFPIVSIEDP 302 >6EM4-A nrPDB Length = 291 Score = 31.6 bits (70), Expect = 0.74, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 16/83 (19%) Query: 326 IKLTELGPRLTLKLVKIEEGICSGKVLHHEFVQKSSEEIKALEKRHAAKMRLKEQRKKEQ 385 I L E+GPR + ++ I EG G ++ E K + + ++K+Q +E Sbjct: 210 ISLVEIGPRFVMTVILILEGSFGGPKIY---------ENKQYVSPNVVRAQIKQQAAEE- 259 Query: 386 EENIAKKKAVKDAKKQRKLERRK 408 AK +A +A +RK++RR+ Sbjct: 260 ----AKSRA--EAAVERKIKRRE 276 >6G18-t nrPDB Length = 475 Score = 31.6 bits (70), Expect = 0.77, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 359 KSSEEIKALEKRHAAKMRLKEQRKKE-QEENIAKKKAVKDAKKQRKLERRKARAA 412 K +E I+ + K+ + + K E +E+ A+K+A+K+ +K+R++E++ + A Sbjct: 397 KQTERIQMINGSDLPKVSTQPRSKNESKEDKRARKQAIKEERKERRVEKKANKLA 451 >6CB1-b nrPDB Length = 291 Score = 31.2 bits (69), Expect = 0.90, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 16/83 (19%) Query: 326 IKLTELGPRLTLKLVKIEEGICSGKVLHHEFVQKSSEEIKALEKRHAAKMRLKEQRKKEQ 385 I L E+GPR + ++ I EG G ++ E K + + ++K+Q +E Sbjct: 210 ISLVEIGPRFVMTVILILEGSFGGPKIY---------ENKQYVSPNVVRAQIKQQAAEE- 259 Query: 386 EENIAKKKAVKDAKKQRKLERRK 408 AK +A +A +RK++RR+ Sbjct: 260 ----AKSRA--EAAVERKIKRRE 276 >5N9J-E nrPDB Length = 376 Score = 30.9 bits (68), Expect = 1.2, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 3/63 (4%) Query: 254 YTSESEIEDDAIVRVVDNQDVKAKHSQSLKSQRTPVEKKDNKEREKETEEEDVEMEEPKP 313 Y S IE++ I+ + +K K ++S K+ + EK E + EEED++M+EP Sbjct: 132 YDKNSPIENEKILEDDQHTAMKEKDNESDKTMKDVEEKT---EPSLKKEEEDIQMKEPLD 188 Query: 314 SEN 316 S++ Sbjct: 189 SQD 191 >4OFZ-A nrPDB Length = 514 Score = 30.9 bits (68), Expect = 1.3, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 3/64 (4%) Query: 393 KAVKDAKKQR--KLERRKARAAEGGEGQGKDDAMS-DDESSSSDSEHYGSVPEDLDSDLF 449 + V D KQR KL++ +A E EG+GK+ S D+S+ +S P+ +D+D Sbjct: 25 ETVTDQGKQRSSKLQKNEAAKDEQVEGKGKETLESGTDKSAEQNSSLLVGQPDVIDNDNV 84 Query: 450 SEVE 453 V+ Sbjct: 85 QTVD 88 >3EUH-A nrPDB Length = 440 Score = 30.5 bits (67), Expect = 1.7, Method: Composition-based stats. Identities = 12/29 (41%), Positives = 19/29 (65%) Query: 424 MSDDESSSSDSEHYGSVPEDLDSDLFSEV 452 M D+E + D E G +PEDL+ + F+E+ Sbjct: 326 MRDEEMALRDEEVTGELPEDLEYEEFNEI 354 >6CNC-N nrPDB Length = 422 Score = 29.7 bits (65), Expect = 2.9, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 14/66 (21%) Query: 250 DLGAYTSESEIEDDAIVRVVDNQDVKAKHSQSLK-----SQRTPVEKKDNKEREKETEEE 304 D GA +SE+E EDD DN+ V +K + R +E +D+ E EK + Sbjct: 132 DNGAESSENEAEDD------DNEGVASKSKKKFNMGKEFEARNLIEDEDDGESEKSS--- 182 Query: 305 DVEMEE 310 DV+M++ Sbjct: 183 DVDMDD 188 >5OQL-K nrPDB Length = 938 Score = 29.3 bits (64), Expect = 4.0, Method: Composition-based stats. Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 13/79 (16%) Query: 211 REVEI-SRNLKRLYKAKNNLSKTVPNLHRKEDISSLILDHDLGAYTS-------ESEIED 262 RE E+ SR + RL + K SKT +HRKE +L ++ AY + +SE E Sbjct: 416 RERELHSREMARLKRIKKIKSKTWRRIHRKE-----LLKNEEAAYQAALEAGELDSEEER 470 Query: 263 DAIVRVVDNQDVKAKHSQS 281 +A+ R + V A+H +S Sbjct: 471 EALDRRRALERVGARHKES 489 >4V3P-LT nrPDB Length = 189 Score = 28.9 bits (63), Expect = 4.4, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 24/43 (55%) Query: 374 KMRLKEQRKKEQEENIAKKKAVKDAKKQRKLERRKARAAEGGE 416 K + ++ R+K + K+A A ++RK+ RR+ R A G E Sbjct: 144 KSKAEKAREKTLSDQFEAKRAKSKASRERKIARREERLAPGPE 186 >3BGW-A nrPDB Length = 444 Score = 28.5 bits (62), Expect = 6.5, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 11/102 (10%) Query: 152 SGEDDQDVNVEKVIVSMFQNIFPPLNPARTSLNSIKRVFMINKDRETGEISMRHYFIDIR 211 SG DD D ++++ +V++++ I A ++ + F DR T R++ + Sbjct: 150 SGTDDDDGSIDEALVTVYEEI----ESADGNITGVPSGFT-ELDRMTYGYKRRNFVLIAA 204 Query: 212 EVEISRNLKRLYKAKN-NLSKTVPNLH-----RKEDISSLIL 247 + + L +AKN + + V NLH +KE+I LI+ Sbjct: 205 RPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLIV 246 >6HKW-A nrPDB Length = 363 Score = 28.2 bits (61), Expect = 9.0, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%) Query: 192 INKDRETGEISMRHYFI-DIREVEISRNLKRLYKAKNNLSKTVPNLHRKEDISSLIL 247 IN DR+ ++ + HY I I E+ + +K L + NL K + NL + + L L Sbjct: 75 INLDRDAEDVDLNHYRIGKIEGFEVLKKVKTLC-LRQNLIKCIENLEELQSLRELDL 130 >6EM3-J nrPDB Length = 427 Score = 27.8 bits (60), Expect = 9.8, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 3/94 (3%) Query: 349 GKVLHHEFVQKSS-EEIKALEKRHAAKMRLKEQRKKEQEENIAKKKAVKDAK--KQRKLE 405 GK + + +QK E+ + LEK + K + K E N+ ++ V+ + + R Sbjct: 315 GKQVQNATLQKRQLEKRETLEKIKSLKNKRKHNEIDHSEFNVGVEEEVEGKRFDRGRPNG 374 Query: 406 RRKARAAEGGEGQGKDDAMSDDESSSSDSEHYGS 439 +R A+ A+ G+G K +D +SS+D + S Sbjct: 375 KRAAKNAKYGQGGMKRFKRKNDATSSADVSGFSS 408 >3BH0-A nrPDB Length = 315 Score = 27.8 bits (60), Expect = 10.0, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 11/102 (10%) Query: 152 SGEDDQDVNVEKVIVSMFQNIFPPLNPARTSLNSIKRVFMINKDRETGEISMRHYFIDIR 211 SG DD D ++++ +V++++ I A ++ + F DR T R++ + Sbjct: 21 SGTDDDDGSIDEALVTVYEEI----ESADGNITGVPSGFT-ELDRMTYGYKRRNFVLIAA 75 Query: 212 EVEISRNLKRLYKAKN-NLSKTVPNLH-----RKEDISSLIL 247 + + L +AKN + + V NLH +KE+I LI+ Sbjct: 76 RPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLIV 117 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.311 0.129 0.347 Lambda K H 0.267 0.0402 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,889,099 Number of Sequences: 36641 Number of extensions: 670615 Number of successful extensions: 2832 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 130 Number of HSP's that attempted gapping in prelim test: 2314 Number of HSP's gapped (non-prelim): 455 length of query: 453 length of database: 10,336,785 effective HSP length: 100 effective length of query: 353 effective length of database: 6,672,685 effective search space: 2355457805 effective search space used: 2355457805 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 61 (28.1 bits)