BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= P38304
         (223 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

4GWP-C nrPDB                                                          461   e-130
5OQM-b nrPDB                                                          456   e-129
5U0S-H nrPDB                                                           77   7e-15
5JEF-A nrPDB                                                           32   0.23 
1V73-A nrPDB                                                           29   1.6  
3GO9-A nrPDB                                                           28   2.6  
4RHB-A nrPDB                                                           28   3.0  
4PUT-A nrPDB                                                           28   3.6  
2KJ5-A nrPDB                                                           28   4.4  
6N8P-A nrPDB                                                           27   4.9  
5D4W-A nrPDB                                                           27   5.8  
4G6U-A nrPDB                                                           27   6.2  
3DNF-A nrPDB                                                           27   6.9  

>4GWP-C nrPDB
          Length = 407

 Score =  461 bits (1186), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 223/223 (100%), Positives = 223/223 (100%)

Query: 1   MSQSTASLVPEGNQGSLQEDVSFDFNGVPGQALDAVRMRLAQLTHSLRRIRDEMSKAELP 60
           MSQSTASLVPEGNQGSLQEDVSFDFNGVPGQALDAVRMRLAQLTHSLRRIRDEMSKAELP
Sbjct: 1   MSQSTASLVPEGNQGSLQEDVSFDFNGVPGQALDAVRMRLAQLTHSLRRIRDEMSKAELP 60

Query: 61  QWYTLQSQLNVTLSQLVSVTSTLQHFQETLDSTVVYPLPKFPTTSHESLVTTLLRKKNIP 120
           QWYTLQSQLNVTLSQLVSVTSTLQHFQETLDSTVVYPLPKFPTTSHESLVTTLLRKKNIP
Sbjct: 61  QWYTLQSQLNVTLSQLVSVTSTLQHFQETLDSTVVYPLPKFPTTSHESLVTTLLRKKNIP 120

Query: 121 EVDEWMKYVRETSGVTTALLKDEEIEKLLQQDREITNWARTTFRNEYGKHDFKNEESLSE 180
           EVDEWMKYVRETSGVTTALLKDEEIEKLLQQDREITNWARTTFRNEYGKHDFKNEESLSE
Sbjct: 121 EVDEWMKYVRETSGVTTALLKDEEIEKLLQQDREITNWARTTFRNEYGKHDFKNEESLSE 180

Query: 181 EHASLLVRDSKPSKPFNVDDVLKFTFTGEKPIITGSTSTSSSN 223
           EHASLLVRDSKPSKPFNVDDVLKFTFTGEKPIITGSTSTSSSN
Sbjct: 181 EHASLLVRDSKPSKPFNVDDVLKFTFTGEKPIITGSTSTSSSN 223


>5OQM-b nrPDB
          Length = 223

 Score =  456 bits (1173), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 223/223 (100%), Positives = 223/223 (100%)

Query: 1   MSQSTASLVPEGNQGSLQEDVSFDFNGVPGQALDAVRMRLAQLTHSLRRIRDEMSKAELP 60
           MSQSTASLVPEGNQGSLQEDVSFDFNGVPGQALDAVRMRLAQLTHSLRRIRDEMSKAELP
Sbjct: 1   MSQSTASLVPEGNQGSLQEDVSFDFNGVPGQALDAVRMRLAQLTHSLRRIRDEMSKAELP 60

Query: 61  QWYTLQSQLNVTLSQLVSVTSTLQHFQETLDSTVVYPLPKFPTTSHESLVTTLLRKKNIP 120
           QWYTLQSQLNVTLSQLVSVTSTLQHFQETLDSTVVYPLPKFPTTSHESLVTTLLRKKNIP
Sbjct: 61  QWYTLQSQLNVTLSQLVSVTSTLQHFQETLDSTVVYPLPKFPTTSHESLVTTLLRKKNIP 120

Query: 121 EVDEWMKYVRETSGVTTALLKDEEIEKLLQQDREITNWARTTFRNEYGKHDFKNEESLSE 180
           EVDEWMKYVRETSGVTTALLKDEEIEKLLQQDREITNWARTTFRNEYGKHDFKNEESLSE
Sbjct: 121 EVDEWMKYVRETSGVTTALLKDEEIEKLLQQDREITNWARTTFRNEYGKHDFKNEESLSE 180

Query: 181 EHASLLVRDSKPSKPFNVDDVLKFTFTGEKPIITGSTSTSSSN 223
           EHASLLVRDSKPSKPFNVDDVLKFTFTGEKPIITGSTSTSSSN
Sbjct: 181 EHASLLVRDSKPSKPFNVDDVLKFTFTGEKPIITGSTSTSSSN 223


>5U0S-H nrPDB
          Length = 200

 Score = 76.6 bits (187), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 100/191 (52%), Gaps = 12/191 (6%)

Query: 31  QALDAVRMRLAQLTHSLRRIRDEMSKAE-LPQWYTLQSQLNVTLSQLVSVTSTLQHFQET 89
           ++L+A+R R+AQ+  SL      + ++E L  W T+    N+ LSQ+ S+++ L     T
Sbjct: 11  ESLEAIRHRIAQIVQSLTHFLAILHQSESLSPWPTIHKNFNILLSQIHSLSNNLAAHSHT 70

Query: 90  LDSTVVYPLPKFPTTSHESLVTTLLRKKNIPEVDEW-MKYVRETSGVTTALLKDEEIEKL 148
           L +T +YP  +FP    E L+TTLLR K +PEV+EW    ++E     ++  K +E    
Sbjct: 71  LQTTSIYPSLEFPVKEQEPLLTTLLRTKALPEVEEWEANTLQEYEASISSQPKKKEANDA 130

Query: 149 LQQDREITNWARTTF---RNEYGKHDF--KNEESLSEEHASLLVRDSKPSKPFNVD---- 199
            Q+D ++ + AR  F   R  Y   DF  + +ES  E  +   +   + ++  N +    
Sbjct: 131 YQKD-QLWDQARIIFMEERENYSWFDFVTRRQESEGEFVSQRQLEIDRATEEQNANQMLT 189

Query: 200 DVLKFTFTGEK 210
           D+L F  +G++
Sbjct: 190 DILSFMKSGKR 200


>5JEF-A nrPDB
          Length = 236

 Score = 32.0 bits (71), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 34  DAVRMRLAQLTHSLRRIRDEMSKAELPQWYTLQSQLNVTLSQLVSVTSTLQHFQE 88
           +AV+ R A L  +   + + +SK +LP WY  Q+ +N  ++Q+      LQH+ E
Sbjct: 93  EAVKTRYAHLNANWLEMNNRLSKGDLP-WY--QANINNYVNQIDLFVLALQHYAE 144


>1V73-A nrPDB
          Length = 342

 Score = 28.9 bits (63), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 12/97 (12%)

Query: 126 MKYVRETSGVTTALLKDEEIEKLLQQDREITNWARTT-----FRNEYGKHDFKNEESLSE 180
           ++YV +   + T L+ +    KL   D EI  W R+        +    H   + E +S 
Sbjct: 159 LRYVHQRYDIATTLI-NRPYNKLYGADTEIGQWLRSKNTIIKINDVLYMHGGISSEWISR 217

Query: 181 E----HASLLVRDS--KPSKPFNVDDVLKFTFTGEKP 211
           E     A+ L R +     K    DD+L F F G  P
Sbjct: 218 ELTLDKANALYRANVDASKKSLKADDLLNFLFFGNGP 254


>3GO9-A nrPDB
          Length = 492

 Score = 28.5 bits (62), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 10/126 (7%)

Query: 10  PEGNQGSLQEDVSFDFNGVPGQALDAVRMRLAQLTHSLRRIRDEMSKAELPQWYTLQSQL 69
           P   QG L    S+     P +  D + +RL   T SL     E+  A L     L S  
Sbjct: 24  PAWQQGKLDNGFSWQLLATPQRPSDRIELRLIVNTGSLSENTQEVGFAHLLPRLALMSSA 83

Query: 70  NVTLSQLVSVTSTLQHFQETLDSTVVYPLPKFPTTSHESLVTTLLRKKNIPE-VDEWMKY 128
           + T +QL S+      +Q+ +D+    PLP    TS++  + +L    N P+ + + + +
Sbjct: 84  SFTPAQLQSL------WQQGIDNE--RPLPPA-ITSYDFTLYSLSLPNNRPDLLKDALAW 134

Query: 129 VRETSG 134
           + +T+G
Sbjct: 135 LSDTAG 140


>4RHB-A nrPDB
          Length = 614

 Score = 28.1 bits (61), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 4/72 (5%)

Query: 12  GNQGSLQEDVSFDFNGVPGQALDAVRM--RLAQLTHSLRRIRDEMSKAELPQWYTLQSQL 69
           G +G +Q D   D       +++  R   RL QL +  R    E  +A LP++Y+   Q 
Sbjct: 443 GLRGGIQYDTRLDNVATSNSSIEYRRDEDRLVQLNY--RYASPEYIQATLPKYYSTAEQY 500

Query: 70  NVTLSQLVSVTS 81
              +SQ+ +V S
Sbjct: 501 KNGISQVGAVAS 512


>4PUT-A nrPDB
          Length = 721

 Score = 27.7 bits (60), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 11/95 (11%)

Query: 7   SLVPEGNQGSLQEDVS-------FDFNGVPGQALDA--VRMRLAQLTHSLRRIRDEMSKA 57
            LVP G+  + ++ +S       FDF   P  ++DA  VR  +  L   L    +++ KA
Sbjct: 13  GLVPRGSHMASEDTLSSNPLLQNFDFP--PFDSVDAHHVRPGIRALLQQLEAELEQLEKA 70

Query: 58  ELPQWYTLQSQLNVTLSQLVSVTSTLQHFQETLDS 92
             P W  L   L   + +L  V   + H +   D+
Sbjct: 71  VEPSWPKLVEPLEKIIDRLSVVWGMINHLKAVKDT 105


>2KJ5-A nrPDB
          Length = 116

 Score = 27.7 bits (60), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 14/87 (16%)

Query: 131 ETSGVTTALLKDEEIEKLLQQDREITNWARTTFRNEYGKHDFKNEESLSEEHASLLVRDS 190
           E +  T A L DE  E+++    +  N  R+             E+ +     SL V D 
Sbjct: 3   EKNAYTVAQLADEYFERMIAGRWKHPNIVRSRI-----------EKDIKPAIGSLKVEDV 51

Query: 191 KPSKPFNVDDVLKFTFTGEKPIITGST 217
           KP    ++DDVLK       P I   T
Sbjct: 52  KPR---HIDDVLKAVMKRGAPSIANDT 75


>6N8P-A nrPDB
          Length = 979

 Score = 27.3 bits (59), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 7   SLVPEGNQGSLQEDVSFDFNGVPGQALDAVRMRLAQLTHS 46
           SL  +G    LQED SF   G PG A  A ++ +  L HS
Sbjct: 90  SLKVKGGASELQEDESFTLRGPPGAAPSATQITVV-LPHS 128


>5D4W-A nrPDB
          Length = 926

 Score = 27.3 bits (59), Expect = 5.8,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)

Query: 31  QALDAVRMRLAQLT---HSLRRIRDEMSKAELPQ 61
           + +D++  RL QL    H+L R +DE SKA L Q
Sbjct: 428 EIIDSLERRLRQLKIEIHALSREKDEASKARLAQ 461


>4G6U-A nrPDB
          Length = 292

 Score = 26.9 bits (58), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 26/54 (48%)

Query: 116 KKNIPEVDEWMKYVRETSGVTTALLKDEEIEKLLQQDREITNWARTTFRNEYGK 169
           K NI    ++ +Y      +T++++ + EI+  +  D   T WA      EYGK
Sbjct: 227 KGNIDAAAKFKEYALSGRELTSSMISNREIQLAIPADTTKTQWAEINRAIEYGK 280


>3DNF-A nrPDB
          Length = 297

 Score = 26.9 bits (58), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 105 SHESLVTTLLRKKNIPEVDEWMKYVRETSGVTTALLKDEEIEKLLQQDREITNWARTTFR 164
           + E     L+ +KN PEV   + Y+R  +G    +   E+I + L+ +R +   A+TT  
Sbjct: 110 TREGYFVVLVGEKNHPEVIGTLGYLRACNGKGIVVETLEDIGEALKHER-VGIVAQTTQN 168

Query: 165 NEYGK 169
            E+ K
Sbjct: 169 EEFFK 173


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

4GWP-C nrPDB                                                          360   e-100
5OQM-b nrPDB                                                          356   4e-99
5U0S-H nrPDB                                                          241   2e-64

Sequences not found previously or not previously below threshold:

4PUT-A nrPDB                                                           35   0.021
5X7U-A nrPDB                                                           32   0.18 
4EQV-A nrPDB                                                           30   0.84 
1V73-A nrPDB                                                           29   1.4  
1M4U-A nrPDB                                                           29   1.6  
6GAW-Ak nrPDB                                                          29   1.8  
1FCP-A nrPDB                                                           29   2.1  
5D1K-B nrPDB                                                           29   2.4  
6N2Y-b2 nrPDB                                                          27   9.6  


CONVERGED!
>4GWP-C nrPDB
          Length = 407

 Score =  360 bits (924), Expect = e-100,   Method: Composition-based stats.
 Identities = 223/223 (100%), Positives = 223/223 (100%)

Query: 1   MSQSTASLVPEGNQGSLQEDVSFDFNGVPGQALDAVRMRLAQLTHSLRRIRDEMSKAELP 60
           MSQSTASLVPEGNQGSLQEDVSFDFNGVPGQALDAVRMRLAQLTHSLRRIRDEMSKAELP
Sbjct: 1   MSQSTASLVPEGNQGSLQEDVSFDFNGVPGQALDAVRMRLAQLTHSLRRIRDEMSKAELP 60

Query: 61  QWYTLQSQLNVTLSQLVSVTSTLQHFQETLDSTVVYPLPKFPTTSHESLVTTLLRKKNIP 120
           QWYTLQSQLNVTLSQLVSVTSTLQHFQETLDSTVVYPLPKFPTTSHESLVTTLLRKKNIP
Sbjct: 61  QWYTLQSQLNVTLSQLVSVTSTLQHFQETLDSTVVYPLPKFPTTSHESLVTTLLRKKNIP 120

Query: 121 EVDEWMKYVRETSGVTTALLKDEEIEKLLQQDREITNWARTTFRNEYGKHDFKNEESLSE 180
           EVDEWMKYVRETSGVTTALLKDEEIEKLLQQDREITNWARTTFRNEYGKHDFKNEESLSE
Sbjct: 121 EVDEWMKYVRETSGVTTALLKDEEIEKLLQQDREITNWARTTFRNEYGKHDFKNEESLSE 180

Query: 181 EHASLLVRDSKPSKPFNVDDVLKFTFTGEKPIITGSTSTSSSN 223
           EHASLLVRDSKPSKPFNVDDVLKFTFTGEKPIITGSTSTSSSN
Sbjct: 181 EHASLLVRDSKPSKPFNVDDVLKFTFTGEKPIITGSTSTSSSN 223


>5OQM-b nrPDB
          Length = 223

 Score =  356 bits (914), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 223/223 (100%), Positives = 223/223 (100%)

Query: 1   MSQSTASLVPEGNQGSLQEDVSFDFNGVPGQALDAVRMRLAQLTHSLRRIRDEMSKAELP 60
           MSQSTASLVPEGNQGSLQEDVSFDFNGVPGQALDAVRMRLAQLTHSLRRIRDEMSKAELP
Sbjct: 1   MSQSTASLVPEGNQGSLQEDVSFDFNGVPGQALDAVRMRLAQLTHSLRRIRDEMSKAELP 60

Query: 61  QWYTLQSQLNVTLSQLVSVTSTLQHFQETLDSTVVYPLPKFPTTSHESLVTTLLRKKNIP 120
           QWYTLQSQLNVTLSQLVSVTSTLQHFQETLDSTVVYPLPKFPTTSHESLVTTLLRKKNIP
Sbjct: 61  QWYTLQSQLNVTLSQLVSVTSTLQHFQETLDSTVVYPLPKFPTTSHESLVTTLLRKKNIP 120

Query: 121 EVDEWMKYVRETSGVTTALLKDEEIEKLLQQDREITNWARTTFRNEYGKHDFKNEESLSE 180
           EVDEWMKYVRETSGVTTALLKDEEIEKLLQQDREITNWARTTFRNEYGKHDFKNEESLSE
Sbjct: 121 EVDEWMKYVRETSGVTTALLKDEEIEKLLQQDREITNWARTTFRNEYGKHDFKNEESLSE 180

Query: 181 EHASLLVRDSKPSKPFNVDDVLKFTFTGEKPIITGSTSTSSSN 223
           EHASLLVRDSKPSKPFNVDDVLKFTFTGEKPIITGSTSTSSSN
Sbjct: 181 EHASLLVRDSKPSKPFNVDDVLKFTFTGEKPIITGSTSTSSSN 223


>5U0S-H nrPDB
          Length = 200

 Score =  241 bits (614), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 58/191 (30%), Positives = 100/191 (52%), Gaps = 12/191 (6%)

Query: 31  QALDAVRMRLAQLTHSLRRIRDEMSKAE-LPQWYTLQSQLNVTLSQLVSVTSTLQHFQET 89
           ++L+A+R R+AQ+  SL      + ++E L  W T+    N+ LSQ+ S+++ L     T
Sbjct: 11  ESLEAIRHRIAQIVQSLTHFLAILHQSESLSPWPTIHKNFNILLSQIHSLSNNLAAHSHT 70

Query: 90  LDSTVVYPLPKFPTTSHESLVTTLLRKKNIPEVDEW-MKYVRETSGVTTALLKDEEIEKL 148
           L +T +YP  +FP    E L+TTLLR K +PEV+EW    ++E     ++  K +E    
Sbjct: 71  LQTTSIYPSLEFPVKEQEPLLTTLLRTKALPEVEEWEANTLQEYEASISSQPKKKEANDA 130

Query: 149 LQQDREITNWARTTF---RNEYGKHDF--KNEESLSEEHASLLVRDSKPSKPFNVD---- 199
            Q+D ++ + AR  F   R  Y   DF  + +ES  E  +   +   + ++  N +    
Sbjct: 131 YQKD-QLWDQARIIFMEERENYSWFDFVTRRQESEGEFVSQRQLEIDRATEEQNANQMLT 189

Query: 200 DVLKFTFTGEK 210
           D+L F  +G++
Sbjct: 190 DILSFMKSGKR 200


>4PUT-A nrPDB
          Length = 721

 Score = 35.1 bits (79), Expect = 0.021,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 79/212 (37%), Gaps = 36/212 (16%)

Query: 8   LVPEGNQGSLQEDVS-------FDFNGVPGQALDA--VRMRLAQLTHSLRRIRDEMSKAE 58
           LVP G+  + ++ +S       FDF   P  ++DA  VR  +  L   L    +++ KA 
Sbjct: 14  LVPRGSHMASEDTLSSNPLLQNFDFP--PFDSVDAHHVRPGIRALLQQLEAELEQLEKAV 71

Query: 59  LPQWYTLQSQLNVTLSQLVSVTSTLQHFQETLDSTVVYPLPKFPTTSHES-LVTTLLRK- 116
            P W  L   L   + +L  V   + H +   D+    P  +      +   V   LR  
Sbjct: 72  EPSWPKLVEPLEKIIDRLSVVWGMINHLKAVKDT----PELRAAIEEVQPEKVKFQLRLG 127

Query: 117 ---------KNIPEVDEWMKYVRETSGVTTALLKDEEIEKLLQQDREITNWARTTFRNEY 167
                    K I E  +W         +  A +K+  +  +  +D +         R E+
Sbjct: 128 QSKPIYNAFKAIRESPDWNSLSEARQRLVEAQIKEAVLSGIALEDDK---------REEF 178

Query: 168 GKHDFKNEESLSEEHASLLVRDSKPSKPFNVD 199
            K + +  E LS + +  ++  +K  +    D
Sbjct: 179 NKIE-QELEKLSHKFSENVLDATKKFEKLITD 209


>5X7U-A nrPDB
          Length = 549

 Score = 32.0 bits (71), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 40/122 (32%), Gaps = 28/122 (22%)

Query: 42  QLTHSLRRIRDE-----MSKAELPQWYTLQSQLNVTLSQLVSVTSTLQHFQETLDSTVVY 96
           +    LR+  D+     M  AE  QW                    + +F    +  + Y
Sbjct: 223 EFLKKLRKFVDDNWPNRMLLAEANQWP----------------EDVVAYFGNGDECHMAY 266

Query: 97  PLPKFPT-------TSHESLVTTLLRKKNIPEVDEWMKYVRETSGVTTALLKDEEIEKLL 149
             P  P             +   L R   IPE  +W  ++R    +T  ++ DEE + + 
Sbjct: 267 HFPIMPRMYMALRREDRHPITEILRRTPPIPETCQWALFLRNHDELTLEMVTDEERDYMY 326

Query: 150 QQ 151
            +
Sbjct: 327 HE 328


>4EQV-A nrPDB
          Length = 512

 Score = 30.1 bits (66), Expect = 0.84,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 61/160 (38%), Gaps = 12/160 (7%)

Query: 53  EMSKAELPQWYTLQSQLNVTLSQLVSVTSTLQHFQETLDSTVVYPLPKFPTTSHESLVTT 112
            ++ +    W    +  N TL++  S    L +   TL+  +VY +    T S       
Sbjct: 334 ILNISNAGPWSRFAT--NTTLTKANSYNVDLSNSTGTLEFELVYAVNTTQTISKSVFADL 391

Query: 113 LLRKKNIPEVDEWMKYVRETSGVTTALLKDEEIEKLLQQDREITNWARTTFRNEYGKHDF 172
            L  K + + +E+++   E S  +  L +     K ++++   TN      R       F
Sbjct: 392 SLWFKGLEDPEEYLRMGFEVSASSFFLDRGNSKVKFVKENPYFTN------RMSVNNQPF 445

Query: 173 KNEESLSEEHASLLVRDSKPSKPFNVDDVLK----FTFTG 208
           K+E  LS      L+  +     FN  DV+     F  TG
Sbjct: 446 KSENDLSYYKVYGLLDQNILELYFNDGDVVSTNTYFMTTG 485


>1V73-A nrPDB
          Length = 342

 Score = 29.4 bits (64), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 12/97 (12%)

Query: 126 MKYVRETSGVTTALLKDEEIEKLLQQDREITNWAR---TTFRNE--------YGKHDFKN 174
           ++YV +   + T L+ +    KL   D EI  W R   T  +                  
Sbjct: 159 LRYVHQRYDIATTLI-NRPYNKLYGADTEIGQWLRSKNTIIKINDVLYMHGGISSEWISR 217

Query: 175 EESLSEEHASLLVRDSKPSKPFNVDDVLKFTFTGEKP 211
           E +L + +A          K    DD+L F F G  P
Sbjct: 218 ELTLDKANALYRANVDASKKSLKADDLLNFLFFGNGP 254


>1M4U-A nrPDB
          Length = 206

 Score = 29.0 bits (63), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 110 VTTLLRKKNIPEVDEWMKYVRETSGVTTALLKDEEIEKLLQQDREITNWARTTFRNEYGK 169
           +  LLR++    +   +K +  + G+  A  K + + K L++  ++  W++T     Y  
Sbjct: 78  LDQLLRQRPSGAMPSEIKGLEFSEGL--AQGKKQRLSKKLRRKLQMWLWSQTFCPVLYAW 135

Query: 170 HDF 172
           +D 
Sbjct: 136 NDL 138


>6GAW-Ak nrPDB
          Length = 325

 Score = 29.0 bits (63), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 11/82 (13%)

Query: 54  MSKAELPQWYTLQSQLNVTLSQLVSVTSTLQHFQETLDSTVVYPLPKFPTTSHESLVTTL 113
           M+   LP W  L+S+             T + F   +      P P   TT   S     
Sbjct: 1   MAATSLPAWLILKSR-----------AGTFRAFSTAMSPATRSPRPALRTTERTSKPERA 49

Query: 114 LRKKNIPEVDEWMKYVRETSGV 135
           LR+K +P   E M   ++   V
Sbjct: 50  LRRKALPPRTEKMAVDQDWPSV 71


>1FCP-A nrPDB
          Length = 705

 Score = 28.6 bits (62), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 139 LLKDEEIEKLLQQDREITNWARTTFRNEYGKHDFKNEESLSEEHASLLVRDSK 191
           +L  ++   +  QD+   +    T    Y   D   +ESL+    +   RD K
Sbjct: 416 ILNKQKQTGVYVQDQAQWDKVLVTLGGRYDWAD---QESLNRVAGTTDKRDDK 465


>5D1K-B nrPDB
          Length = 133

 Score = 28.6 bits (62), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 106 HESLVTTLLRKKNIPEVDEWMKYVRETSGVTTALLKDEEIEKLLQQDRE 154
            E LV  L   K  PE  + M+          +L + EE ++L Q+ +E
Sbjct: 77  REPLVYDLASLKAAPEPQQPMEL---YQPSAESLRQQEERKRLYQRQQE 122


>6N2Y-b2 nrPDB
          Length = 168

 Score = 26.7 bits (57), Expect = 9.6,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 13/105 (12%)

Query: 93  TVVYPLPKFPTTSHESLVTTLLRKKNIPEVDEWMKYVRETSG--VTTALLKDEEIEKLLQ 150
           T++Y L  F       ++  LLRK     +   MK   E     +  A  + +E EKLL+
Sbjct: 10  TIIYQLLMF------IILLALLRKFAWQPLMNIMKQREEHIANEIDQAEKRRQEAEKLLE 63

Query: 151 QDREITNWARTTFRNEYGKHDFKNEESLSEEHASLLVRDSKPSKP 195
           + RE+   +R     +  +   +N   L+EE    +V  ++    
Sbjct: 64  EQRELMKQSR-----QEAQALIENARKLAEEQKEQIVASARAEAE 103


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.306    0.126    0.330 

Lambda     K      H
   0.267   0.0379    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,191,889
Number of Sequences: 36641
Number of extensions: 242427
Number of successful extensions: 649
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 630
Number of HSP's gapped (non-prelim): 37
length of query: 223
length of database: 10,336,785
effective HSP length: 93
effective length of query: 130
effective length of database: 6,929,172
effective search space: 900792360
effective search space used: 900792360
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.5 bits)
S2: 57 (26.7 bits)