BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= P38251
(354 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
1SXJ-E nrPDB 720 0.0
1IQP-A nrPDB 119 2e-27
2CHG-A nrPDB 117 7e-27
2CHV-A nrPDB 117 9e-27
1SXJ-D nrPDB 116 1e-26
1SXJ-C nrPDB 103 1e-22
1SXJ-B nrPDB 93 2e-19
3U5Z-B nrPDB 52 5e-07
3GLF-B nrPDB 42 3e-04
1NJG-A nrPDB 42 4e-04
3PXI-A nrPDB 40 0.002
6EM8-A nrPDB 37 0.014
3J3U-A nrPDB 37 0.017
6EMW-B nrPDB 35 0.036
5OFO-C nrPDB 33 0.22
1HQC-A nrPDB 33 0.22
4CIU-A nrPDB 33 0.23
5ZFQ-A nrPDB 32 0.58
3JVU-A nrPDB 32 0.59
5U1D-A nrPDB 31 0.65
1JJ7-A nrPDB 31 0.91
6FGZ-A nrPDB 30 1.4
2IXE-A nrPDB 30 1.7
2IUS-A nrPDB 30 2.1
6M99-B nrPDB 30 2.1
5XIG-A nrPDB 30 2.1
5D4W-A nrPDB 30 2.1
5VQ9-D nrPDB 29 2.8
4E22-A nrPDB 29 3.0
2JNX-A nrPDB 28 4.3
2IUT-A nrPDB 28 5.4
2IUU-A nrPDB 28 6.0
5ZCD-A nrPDB 28 6.9
5CUX-A nrPDB 28 8.8
>1SXJ-E nrPDB
Length = 354
Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/354 (99%), Positives = 354/354 (100%)
Query: 1 MSLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60
MSLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI
Sbjct: 1 MSLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60
Query: 61 FGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQME 120
FGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQME
Sbjct: 61 FGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQME 120
Query: 121 QVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAP 180
QVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAP
Sbjct: 121 QVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAP 180
Query: 181 IKSRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESM 240
IKS+CLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESM
Sbjct: 181 IKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESM 240
Query: 241 ALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIIL 300
ALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIIL
Sbjct: 241 ALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIIL 300
Query: 301 KELTFSLLDVETLNTTNKSSIIEYSSVFDERLSLGNKAIFHLEGFIAKVMCCLD 354
KELTFSLLDVETLNTTNKSSIIEYSSVFDERLSLGNKAIFHLEGFIAKVMCCLD
Sbjct: 301 KELTFSLLDVETLNTTNKSSIIEYSSVFDERLSLGNKAIFHLEGFIAKVMCCLD 354
>1IQP-A nrPDB
Length = 327
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 124/238 (52%), Gaps = 36/238 (15%)
Query: 4 WVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGP 63
WV+KYRP+ L+ + E + LK + +PHLL GP G GK T +AL +FG
Sbjct: 15 WVEKYRPQRLDDIVGQEHIVKRLKHYV-KTGSMPHLLFAGPPGVGKTTAALALARELFGE 73
Query: 64 GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVD 123
+R LELN + G N VI+E +KE A+ + +
Sbjct: 74 N-WRHNF------------LELN----------ASDERGIN---VIREKVKEFARTKPIG 107
Query: 124 FQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKS 183
+K + ++EA++LT+DAQ ALRRTME +S N+R I+ C+ S II PI+S
Sbjct: 108 --------GASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS 159
Query: 184 RCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMA 241
RC + R D +I+ L + NE ++L T++ L+ I + G++R ++ +L++ A
Sbjct: 160 RCAIFRFRPLRDEDIAKRLRYIAENEGLEL-TEEGLQAILYIAEGDMRRAINILQAAA 216
>2CHG-A nrPDB
Length = 226
Score = 117 bits (293), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 128/247 (51%), Gaps = 38/247 (15%)
Query: 1 MSLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60
+WV+KYRP++L+ + +E+ LK ++ +++PHLL GP GTGK +AL +
Sbjct: 4 FEIWVEKYRPRTLDEVVGQDEVIQRLKGYVER-KNIPHLLFSGPPGTGKTATAIALARDL 62
Query: 61 FGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQME 120
FG N + +E+ SD D V++ +KE A+
Sbjct: 63 FG----------------ENWRDNF--------IEMNASDERGID--VVRHKIKEFARTA 96
Query: 121 QVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAP 180
+ +K + ++EA++LT DAQAALRRTME YSK+ R I+ C+ +S II P
Sbjct: 97 PIG--------GAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEP 148
Query: 181 IKSRCLLIRC-PAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLES 239
I+SRC + R P P ++ +L ++ E +++ T+D L+ + S G+ R ++ L+
Sbjct: 149 IQSRCAVFRFKPVPKEAMKKRLL-EICEKEGVKI-TEDGLEALIYISGGDFRKAINALQG 206
Query: 240 MALNNEL 246
A E+
Sbjct: 207 AAAIGEV 213
>2CHV-A nrPDB
Length = 319
Score = 117 bits (292), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 95/354 (26%), Positives = 170/354 (48%), Gaps = 53/354 (14%)
Query: 1 MSLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60
+WV+KYRP++L+ + +E+ LK ++ +++PHLL GP GTGK +AL +
Sbjct: 4 FEIWVEKYRPRTLDEVVGQDEVIQRLKGYVER-KNIPHLLFSGPPGTGKTATAIALARDL 62
Query: 61 FGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQME 120
FG +R +E+ SD D V++ +KE A+
Sbjct: 63 FGEN-WR-----------------------DNFIEMNASDERGID--VVRHKIKEFARTA 96
Query: 121 QVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAP 180
+ +K + ++EA++LT DAQAALRRTME YSK+ R I+ C+ +S II P
Sbjct: 97 PIG--------GAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEP 148
Query: 181 IKSRCLLIRC-PAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLES 239
I+SRC + R P P ++ +L ++ E +++ T+D L+ + S G+ R ++ L+
Sbjct: 149 IQSRCAVFRFKPVPKEAMKKRLL-EICEKEGVKI-TEDGLEALIYISGGDFRKAINALQG 206
Query: 240 MALNNELALKSSSPIIKPDWIIVIHKLTR-----KIVKERSVNSLIECRAVLYDLLA-HC 293
A E ++ D I I R ++++ + +E R +L L+ +
Sbjct: 207 AAAIGE--------VVDADTIYQITATARPEEMTELIQTALKGNFMEARELLDRLMVEYG 258
Query: 294 IPANIILKELTFSLLDVETLNTTNKSSIIEYSSVFDERLSLGNKAIFHLEGFIA 347
+ I+ +L ++ + + + K +I+ D RL+ G L+ ++A
Sbjct: 259 MSGEDIVAQLFREIISM-PIKDSLKVQLIDKLGEVDFRLTEGANERIQLDAYLA 311
>1SXJ-D nrPDB
Length = 353
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/349 (26%), Positives = 164/349 (46%), Gaps = 28/349 (8%)
Query: 4 WVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGP 63
WV+KYRPK+L+ ++ + LK + + +LPH+L YGP GTGK + +AL + ++GP
Sbjct: 27 WVEKYRPKNLDEVTAQDHAVTVLKK-TLKSANLPHMLFYGPPGTGKTSTILALTKELYGP 85
Query: 64 GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVD 123
+ + +I LELN S + I + N R+ + + K
Sbjct: 86 DLMKSRI------------LELNA-SDERGISIVREKVKNFARLTVSKPSK--------- 123
Query: 124 FQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKS 183
D ++ YK +I++EA+S+T DAQ+ALRRTME YS R ++C+ ++ II P+ S
Sbjct: 124 -HDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLAS 182
Query: 184 RCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALN 243
+C R A S L + E ++ + +L+RI S G+LR + +L+S +
Sbjct: 183 QCSKFRFKALDASNAIDRLRFISEQENVKCD-DGVLERILDISAGDLRRGITLLQSASKG 241
Query: 244 NEL---ALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIIL 300
+ +S ++ +V H + +IV++ E + + + A ++
Sbjct: 242 AQYLGDGKNITSTQVEELAGVVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVV 301
Query: 301 KELTFSLLDVETLNTTNKSSIIEYSSVFDERLSLGNKAIFHLEGFIAKV 349
+L + + +T K+ I D RL+ G L + K+
Sbjct: 302 NQLHEYYITNDNFDTNFKNQISWLLFTTDSRLNNGTNEHIQLLNLLVKI 350
>1SXJ-C nrPDB
Length = 340
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 125/237 (52%), Gaps = 38/237 (16%)
Query: 4 WVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGP 63
WV+KYRP++L+ + E+ ++ D+ + LPHLL YGP GTGK + +AL I+G
Sbjct: 15 WVEKYRPETLDEVYGQNEVITTVRKFVDEGK-LPHLLFYGPPGTGKTSTIVALAREIYGK 73
Query: 64 GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVD 123
SN LELN ++DR + +V + + D
Sbjct: 74 NY-------------SNMVLELN---------------ASDDRGI------DVVRNQIKD 99
Query: 124 FQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKS 183
F ++ + +K +I++EA+++T AQ ALRR +E+Y+KN R ++ + + + S
Sbjct: 100 FASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLS 159
Query: 184 RCLLIRC-PAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLES 239
+C R P P ++ I +++V+ +E+++L + + K + + SNG++R L +L+S
Sbjct: 160 QCTRFRFQPLPQEA-IERRIANVLVHEKLKL-SPNAEKALIELSNGDMRRVLNVLQS 214
>1SXJ-B nrPDB
Length = 323
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 120/243 (49%), Gaps = 35/243 (14%)
Query: 4 WVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGP 63
WV+KYRP+ L+ + N+E + L+ ++ + ++PH+++ G G GK T L + G
Sbjct: 11 WVEKYRPQVLSDIVGNKETIDRLQQIA-KDGNMPHMIISGMPGIGKTTSVHCLAHELLG- 68
Query: 64 GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVD 123
R + LE+ SD D V++ +K AQ +++
Sbjct: 69 ---------RSYADGV--------------LELNASDDRGID--VVRNQIKHFAQ-KKLH 102
Query: 124 FQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKS 183
K +K VI++EA+S+T AQ ALRRTME YS + R C+ + II P++S
Sbjct: 103 LPPGK------HKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQS 156
Query: 184 RCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALN 243
+C ++R SD ++ L ++ E ++ T D L+ I + G++R ++ L+S
Sbjct: 157 QCAILRYSKLSDEDVLKRLLQIIKLEDVKY-TNDGLEAIIFTAEGDMRQAINNLQSTVAG 215
Query: 244 NEL 246
+ L
Sbjct: 216 HGL 218
>3U5Z-B nrPDB
Length = 324
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 76/333 (22%), Positives = 133/333 (39%), Gaps = 88/333 (26%)
Query: 7 KYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPN-GTGKKTRCMALLESIFGPGV 65
KYRP +++ KS++ + + +PH++L+ P+ GTGK T AL +
Sbjct: 19 KYRPSTIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDV----- 72
Query: 66 YRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQ 125
D+ FV S+ K++ V P L A D
Sbjct: 73 ---NADM-MFVNGSDCKIDF--VRGP---------------------LTNFASAASFD-- 103
Query: 126 DSKDGLAHRYKCVIINEAN-SLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSR 184
R K ++I+E + S ++Q LR ME YS N +I+ +++ II P++SR
Sbjct: 104 -------GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR 156
Query: 185 CLLIRCPAPSDSEISTI-------LSDVVTNERIQLET------------KDILKRIAQ- 224
C +I P+D + + L+++ +E I + D K I +
Sbjct: 157 CRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGEL 216
Query: 225 ---ASNGNLRVSLL------------MLESMALNNELALKSSSPIIKPDWIIVIHKLTRK 269
+S G L +L +LES+ + L++ +P D+ + KL +
Sbjct: 217 DSYSSKGVLDAGILSLVTNDRGAIDDVLESLKNKDVKQLRALAPKYAADYSWFVGKLAEE 276
Query: 270 IVKERSVNSLIECRAVLYDLLA-----HCIPAN 297
I + S+I +Y+++ H I AN
Sbjct: 277 IYSRVTPQSIIR----MYEIVGENNQYHGIAAN 305
>3GLF-B nrPDB
Length = 395
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSRCLLIRCPAP 193
R+K +I+E + L++ + AL +T+E+ ++++ ++ + I SRCL A
Sbjct: 141 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 200
Query: 194 SDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSL 234
+I L ++ E I E + L+ +A+A+ G+LR +L
Sbjct: 201 DVEQIRHQLEHILNEEHIAHEPR-ALQLLARAAEGSLRDAL 240
>1NJG-A nrPDB
Length = 250
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSRCLLIRCPAP 193
R+K +I+E + L++ + AL +T+E+ ++++ ++ + I SRCL A
Sbjct: 126 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 185
Query: 194 SDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSL 234
+I L ++ E I E + L+ +A+A+ G+LR +L
Sbjct: 186 DVEQIRHQLEHILNEEHIAHEPR-ALQLLARAAEGSLRDAL 225
>3PXI-A nrPDB
Length = 758
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 28 SLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV---TASNRKLE 84
L D R + + GP G GK AL ESIFG ++ID+ +++ + S +L
Sbjct: 513 GLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLT 572
Query: 85 LNVVSSPY 92
V PY
Sbjct: 573 EKVRRKPY 580
>6EM8-A nrPDB
Length = 818
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 28 SLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV 76
L D R + + GP G GK AL ES+FG +++D+ +F+
Sbjct: 530 GLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGDDDAMIRVDMSEFM 578
>3J3U-A nrPDB
Length = 810
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 28 SLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV 76
L D R + + GP G GK AL ESIFG ++ID+ +++
Sbjct: 530 GLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYM 578
>6EMW-B nrPDB
Length = 225
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 28 SLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV 76
L D R + + GP G GK AL ES+FG +++D+ +F+
Sbjct: 43 GLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGDDDAMIRVDMSEFM 91
>5OFO-C nrPDB
Length = 871
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 28 SLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV 76
L+D R + L GP G GK C AL +F ++ID+ +F+
Sbjct: 594 GLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFM 642
>1HQC-A nrPDB
Length = 324
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 9 RPKSLNALSHNEELTN----FLKSLSDQPRDLPHLLLYGPNGTGKKT 51
RPK+L+ E L +L++ + L HLLL+GP G GK T
Sbjct: 7 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTT 53
>4CIU-A nrPDB
Length = 727
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 28 SLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV 76
L+D R + L GP G GK C AL +F ++ID+ +F+
Sbjct: 448 GLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFM 496
>5ZFQ-A nrPDB
Length = 390
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Query: 26 LKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60
+K L+++PR L +L+ GP G+GK T A+++ I
Sbjct: 141 VKELAEKPRGL--ILVTGPTGSGKSTTLAAIIDKI 173
>3JVU-A nrPDB
Length = 356
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 22 LTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLE 58
+ K +SD PR L +L+ GP G+GK T A+L+
Sbjct: 111 MGEVFKRVSDVPRGL--VLVTGPTGSGKSTTLAAMLD 145
>5U1D-A nrPDB
Length = 748
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 41 LYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD 100
L GPNG+GK T ALL++++ P +L +D + +R L V + + P
Sbjct: 536 LVGPNGSGKST-VAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAA----VGQEPQV 590
Query: 101 MGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRY 135
G + + I L + ME++ K G AH +
Sbjct: 591 FGRSLQENIAYGLTQKPTMEEITAAAVKSG-AHSF 624
>1JJ7-A nrPDB
Length = 260
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 41 LYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD 100
L GPNG+GK T ALL++++ P +L +D + +R L V + + P
Sbjct: 48 LVGPNGSGKST-VAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAA----VGQEPQV 102
Query: 101 MGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRY 135
G + + I L + ME++ K G AH +
Sbjct: 103 FGRSLQENIAYGLTQKPTMEEITAAAVKSG-AHSF 136
>6FGZ-A nrPDB
Length = 774
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 25 FLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALL-ESIFGPG---VYRLKIDVRQFVTASN 80
F ++ D P DLP +++ G +GK + ++ ESIF G V R I V+ + TA
Sbjct: 15 FAETGLDSPIDLPQIMVVGAQSSGKSSVLENVVGESIFPRGTGIVTRRPIVVQLYCTARE 74
Query: 81 RKLELNVVSSPYHL 94
R LN +P ++
Sbjct: 75 R---LNQSGAPDNM 85
>2IXE-A nrPDB
Length = 271
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 12/121 (9%)
Query: 41 LYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD 100
L GPNG+GK T ALL++++ P ++ +D V + L V + + P
Sbjct: 50 LVGPNGSGKST-VAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAA----VGQEPLL 104
Query: 101 MGNNDRIVIQELLKEVAQMEQV-------DFQDSKDGLAHRYKCVIINEANSLTKDAQAA 153
G + R I L ME++ D G Y + N L+ + A
Sbjct: 105 FGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQA 164
Query: 154 L 154
+
Sbjct: 165 V 165
>2IUS-A nrPDB
Length = 512
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 36 LPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHL 94
+PHLL+ G G+G A++ S+ Y+ + + +F+ + LEL+V HL
Sbjct: 167 MPHLLVAGTTGSGASVGVNAMILSML----YKAQPEDVRFIMIDPKMLELSVYEGIPHL 221
>6M99-B nrPDB
Length = 728
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 150 AQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSRCLLIRCP 191
A LRR ++++S ++ + ++ I P+K+RCLL+ P
Sbjct: 41 APGWLRRQLDEFSASLTASELLQALQTIPIPVKARCLLLPKP 82
>5XIG-A nrPDB
Length = 500
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 7/114 (6%)
Query: 67 RLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQD 126
R++ID R T + V P LE+ P D+ V++ E Q+ D
Sbjct: 322 RVRIDDRSNYTPGWKYNHWEVKGVPLRLELGPKDLAKGTARVVRRDTGEAYQISWAD--- 378
Query: 127 SKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAP 180
LA + ++ SL + A+A L +EK S ++ + ++AP
Sbjct: 379 ----LAPKLLELMEGIQRSLFEKAKARLHEGIEKISTFDEVMPALNRKHLVLAP 428
>5D4W-A nrPDB
Length = 926
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 33 PRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQF 75
P P L GP+GTGK AL E +F ++ D+ ++
Sbjct: 624 PNQPPSFLFCGPSGTGKTLLTKALAEFLFDDPKSMIRFDMSEY 666
>5VQ9-D nrPDB
Length = 432
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 39 LLLYGPNGTGKKTRCMALLESI 60
+LL+GP GTGK + C AL + +
Sbjct: 175 VLLHGPPGTGKTSLCKALAQKL 196
>4E22-A nrPDB
Length = 252
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 37 PHLLLYGPNGTGKKTRCMALLESI 60
P + + GP+G GK T C AL ES+
Sbjct: 28 PVITVDGPSGAGKGTLCKALAESL 51
>2JNX-A nrPDB
Length = 134
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 100 DMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTME 159
D+ N I + E K A +++ D D K GL YK + + LTK+ +
Sbjct: 46 DIDGNGEIDLAEFTKFAAAVKEQDLSDEKVGLKILYKLMDADGDGKLTKEEVTTFFKKF- 104
Query: 160 KYSKNIRLIMVCDS 173
Y K + IM D+
Sbjct: 105 GYEKVVDQIMKADA 118
>2IUT-A nrPDB
Length = 574
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 36 LPHLLLYGPNGTGKKTRCMALLESIF 61
+PHLL+ G G+GK A+L SI
Sbjct: 214 MPHLLVAGTTGSGKSVGVNAMLLSIL 239
>2IUU-A nrPDB
Length = 491
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 36 LPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHL 94
+PHLL+ G G+GK A+L SI ++ + + + LEL++ HL
Sbjct: 214 MPHLLVAGTTGSGKSVGVNAMLLSIL----FKSTPSEARLIMIDPKMLELSIYEGIPHL 268
>5ZCD-A nrPDB
Length = 555
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
Query: 90 SPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKD 149
+P L+ PS G+ +R IQE LKE+ K+ +Y + + +AN +T D
Sbjct: 215 NPEKLDYVPSFEGHMNRPGIQEHLKEL-----------KEKTFAKYDIMTVGQANGVTSD 263
Query: 150 A 150
+
Sbjct: 264 S 264
>5CUX-A nrPDB
Length = 263
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 16 LSHNEELTNFLKSLSDQPRDLPHLL 40
+SHN+ + FLK + D P+ LP L
Sbjct: 189 ISHNDPICRFLKDIHDVPKFLPGCL 213
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
1SXJ-E nrPDB 467 e-132
1SXJ-D nrPDB 373 e-104
2CHV-A nrPDB 354 4e-98
1IQP-A nrPDB 294 3e-80
2CHG-A nrPDB 279 2e-75
1SXJ-B nrPDB 246 1e-65
1SXJ-C nrPDB 237 5e-63
3U5Z-B nrPDB 223 1e-58
3GLF-B nrPDB 158 3e-39
1NJG-A nrPDB 153 9e-38
Sequences not found previously or not previously below threshold:
1SXJ-A nrPDB 86 3e-17
3PVS-A nrPDB 70 1e-12
1HQC-A nrPDB 66 3e-11
4D81-A nrPDB 52 5e-07
2XSZ-D nrPDB 51 7e-07
1IN6-A nrPDB 48 7e-06
4LGM-A nrPDB 48 7e-06
2XSZ-A nrPDB 47 2e-05
6EMW-B nrPDB 44 9e-05
4LCB-A nrPDB 43 3e-04
6B5C-A nrPDB 43 3e-04
6EM8-A nrPDB 43 3e-04
6QI9-D nrPDB 42 4e-04
5WC0-A nrPDB 42 4e-04
6B5D-A nrPDB 42 5e-04
1XXI-E nrPDB 42 5e-04
6AP1-A nrPDB 41 6e-04
5VHP-C nrPDB 41 6e-04
3K1J-A nrPDB 41 6e-04
5M32-h nrPDB 41 6e-04
5EQT-A nrPDB 41 8e-04
4YPL-A nrPDB 41 8e-04
5GJQ-J nrPDB 41 8e-04
3JCO-J nrPDB 41 9e-04
3EIH-A nrPDB 41 9e-04
2I3B-A nrPDB 41 0.001
4CIU-A nrPDB 41 0.001
5XMK-A nrPDB 41 0.001
5VHN-D nrPDB 40 0.002
3J3U-A nrPDB 40 0.002
4YPN-A nrPDB 39 0.002
6QEL-G nrPDB 39 0.002
4ZPX-A nrPDB 39 0.002
5VQ9-D nrPDB 39 0.002
5T0C-AD nrPDB 39 0.003
3PFI-A nrPDB 39 0.003
6EF2-J nrPDB 39 0.003
6EF1-K nrPDB 39 0.004
6NYV-B nrPDB 39 0.004
5D4W-A nrPDB 39 0.004
3M6A-A nrPDB 38 0.005
6CHS-H nrPDB 38 0.006
5ZQM-A nrPDB 38 0.006
5OFO-C nrPDB 38 0.006
6BLB-A nrPDB 38 0.007
5WVI-K nrPDB 38 0.007
3WHK-A nrPDB 38 0.008
5UBV-A nrPDB 38 0.009
3PXI-A nrPDB 37 0.011
2QBY-A nrPDB 37 0.012
3D8B-A nrPDB 37 0.012
5U1D-A nrPDB 37 0.015
1JJ7-A nrPDB 37 0.015
1XWI-A nrPDB 37 0.015
3H4M-A nrPDB 37 0.017
6MSK-B nrPDB 36 0.019
2ZAO-A nrPDB 36 0.019
5VHO-B nrPDB 36 0.020
5VHF-B nrPDB 36 0.021
5VFP-B nrPDB 36 0.024
4XGC-A nrPDB 36 0.029
5Z6Q-A nrPDB 36 0.030
6HE4-H nrPDB 36 0.030
6GEJ-U nrPDB 36 0.037
2R44-A nrPDB 35 0.039
6HE9-H nrPDB 35 0.039
4LJ8-A nrPDB 35 0.039
6AZ0-A nrPDB 35 0.047
2CE7-A nrPDB 35 0.049
5V8F-9 nrPDB 35 0.058
1QVR-A nrPDB 34 0.075
6EMW-E nrPDB 34 0.076
6QI8-A nrPDB 34 0.078
5VC7-A nrPDB 34 0.078
2R65-A nrPDB 34 0.093
5G4G-A nrPDB 34 0.10
6EF0-H nrPDB 34 0.12
6E11-1 nrPDB 34 0.12
2IXE-A nrPDB 34 0.13
6ED3-A nrPDB 34 0.14
6D00-1 nrPDB 34 0.14
5VHP-E nrPDB 34 0.14
6EF3-H nrPDB 33 0.15
5VHO-F nrPDB 33 0.16
5W0T-A nrPDB 33 0.16
6EF0-L nrPDB 33 0.16
3CF0-A nrPDB 33 0.17
5U1D-B nrPDB 33 0.17
6MCK-A nrPDB 33 0.19
5C18-A nrPDB 33 0.19
6MSD-E nrPDB 33 0.19
5VHO-A nrPDB 33 0.19
5KWA-A nrPDB 33 0.20
5VFU-A nrPDB 33 0.22
3HU1-A nrPDB 33 0.23
1YE8-A nrPDB 33 0.24
5UJM-A nrPDB 33 0.24
4WW4-B nrPDB 33 0.25
3H1T-A nrPDB 33 0.25
4XGU-A nrPDB 33 0.25
5L3S-B nrPDB 33 0.26
1JBK-A nrPDB 33 0.26
5WVI-L nrPDB 33 0.28
6FVU-L nrPDB 33 0.28
6EPC-H nrPDB 33 0.28
5VFP-F nrPDB 33 0.29
3SYK-A nrPDB 33 0.31
3JC7-2 nrPDB 33 0.31
3PXG-A nrPDB 32 0.33
6EPD-M nrPDB 32 0.34
1IHU-A nrPDB 32 0.37
5FM7-A nrPDB 32 0.38
4XGC-D nrPDB 32 0.38
6HA8-V nrPDB 32 0.42
1LV7-A nrPDB 32 0.49
6EF0-M nrPDB 32 0.51
6AMN-A nrPDB 32 0.51
2AKY-A nrPDB 32 0.51
5D0U-A nrPDB 31 0.57
6MAT-A nrPDB 31 0.65
5VY8-A nrPDB 31 0.66
3HV2-A nrPDB 31 0.66
5V8F-A nrPDB 31 0.69
2X8A-A nrPDB 31 0.70
4M4W-J nrPDB 31 0.72
2FZ4-A nrPDB 31 0.72
2IUS-A nrPDB 31 0.76
3JC8-Ba nrPDB 31 0.77
3FHC-B nrPDB 31 0.77
1P4S-A nrPDB 31 0.84
4HSE-A nrPDB 31 0.84
2P65-A nrPDB 31 0.84
5E7P-A nrPDB 31 0.86
6F8L-G nrPDB 31 0.93
5A5B-M nrPDB 31 0.93
3CM0-A nrPDB 31 0.93
1FNN-A nrPDB 31 0.93
6B4I-E nrPDB 31 0.96
1G29-1 nrPDB 31 1.0
2V1U-A nrPDB 31 1.1
3FMO-B nrPDB 31 1.1
2FWR-A nrPDB 30 1.3
4B3F-X nrPDB 30 1.3
1IY1-A nrPDB 30 1.4
6EJ5-A nrPDB 30 1.4
5WWP-B nrPDB 30 1.4
2WJV-A nrPDB 30 1.4
5A9K-A nrPDB 30 1.5
2GXA-A nrPDB 30 1.5
1Y63-A nrPDB 30 1.5
5BQ5-A nrPDB 30 1.5
3JCP-I nrPDB 30 1.5
2BDT-A nrPDB 30 1.6
2DHR-A nrPDB 30 1.6
6GEJ-T nrPDB 30 1.8
6EF1-I nrPDB 30 1.8
6FVU-I nrPDB 30 2.0
5JZV-A nrPDB 30 2.1
3NXS-A nrPDB 30 2.1
2OG2-A nrPDB 29 2.2
4Z0H-O nrPDB 29 2.3
5LL6-h nrPDB 29 2.3
5L3R-B nrPDB 29 2.4
3HTX-A nrPDB 29 2.4
3IIK-A nrPDB 29 2.5
5ZFQ-A nrPDB 29 2.5
2D62-A nrPDB 29 2.6
4F4J-A nrPDB 29 2.9
6QUZ-B nrPDB 29 3.0
3SR0-A nrPDB 29 3.4
6FA9-A nrPDB 29 3.7
6CY1-A nrPDB 29 3.7
4Q7L-A nrPDB 29 3.9
2IUU-A nrPDB 29 4.1
2IUT-A nrPDB 29 4.3
4Z2C-C nrPDB 28 4.9
4YMS-J nrPDB 28 5.1
1ODF-A nrPDB 28 5.3
3CIA-A nrPDB 28 5.4
4E22-A nrPDB 28 5.5
3EC2-A nrPDB 28 5.6
4L16-A nrPDB 28 5.9
4YER-A nrPDB 28 6.0
2QZ4-A nrPDB 28 6.5
4Z8X-A nrPDB 28 6.8
4PHT-A nrPDB 28 6.8
3R8C-A nrPDB 28 7.1
2XZL-A nrPDB 28 7.9
5IJN-C nrPDB 28 8.1
2F03-A nrPDB 28 8.6
2IHY-A nrPDB 28 9.4
>1SXJ-E nrPDB
Length = 354
Score = 467 bits (1201), Expect = e-132, Method: Composition-based stats.
Identities = 353/354 (99%), Positives = 354/354 (100%)
Query: 1 MSLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60
MSLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI
Sbjct: 1 MSLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60
Query: 61 FGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQME 120
FGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQME
Sbjct: 61 FGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQME 120
Query: 121 QVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAP 180
QVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAP
Sbjct: 121 QVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAP 180
Query: 181 IKSRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESM 240
IKS+CLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESM
Sbjct: 181 IKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESM 240
Query: 241 ALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIIL 300
ALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIIL
Sbjct: 241 ALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIIL 300
Query: 301 KELTFSLLDVETLNTTNKSSIIEYSSVFDERLSLGNKAIFHLEGFIAKVMCCLD 354
KELTFSLLDVETLNTTNKSSIIEYSSVFDERLSLGNKAIFHLEGFIAKVMCCLD
Sbjct: 301 KELTFSLLDVETLNTTNKSSIIEYSSVFDERLSLGNKAIFHLEGFIAKVMCCLD 354
>1SXJ-D nrPDB
Length = 353
Score = 373 bits (956), Expect = e-104, Method: Composition-based stats.
Identities = 93/349 (26%), Positives = 164/349 (46%), Gaps = 28/349 (8%)
Query: 4 WVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGP 63
WV+KYRPK+L+ ++ + LK + + +LPH+L YGP GTGK + +AL + ++GP
Sbjct: 27 WVEKYRPKNLDEVTAQDHAVTVLKK-TLKSANLPHMLFYGPPGTGKTSTILALTKELYGP 85
Query: 64 GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVD 123
+ + +I LELN S + I + N R+ + + K
Sbjct: 86 DLMKSRI------------LELNA-SDERGISIVREKVKNFARLTVSKPSK--------- 123
Query: 124 FQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKS 183
D ++ YK +I++EA+S+T DAQ+ALRRTME YS R ++C+ ++ II P+ S
Sbjct: 124 -HDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLAS 182
Query: 184 RCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALN 243
+C R A S L + E ++ + +L+RI S G+LR + +L+S +
Sbjct: 183 QCSKFRFKALDASNAIDRLRFISEQENVKCDD-GVLERILDISAGDLRRGITLLQSASKG 241
Query: 244 NEL---ALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIIL 300
+ +S ++ +V H + +IV++ E + + + A ++
Sbjct: 242 AQYLGDGKNITSTQVEELAGVVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVV 301
Query: 301 KELTFSLLDVETLNTTNKSSIIEYSSVFDERLSLGNKAIFHLEGFIAKV 349
+L + + +T K+ I D RL+ G L + K+
Sbjct: 302 NQLHEYYITNDNFDTNFKNQISWLLFTTDSRLNNGTNEHIQLLNLLVKI 350
>2CHV-A nrPDB
Length = 319
Score = 354 bits (907), Expect = 4e-98, Method: Composition-based stats.
Identities = 93/353 (26%), Positives = 166/353 (47%), Gaps = 51/353 (14%)
Query: 1 MSLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60
+WV+KYRP++L+ + +E+ LK ++ +++PHLL GP GTGK +AL +
Sbjct: 4 FEIWVEKYRPRTLDEVVGQDEVIQRLKGYVER-KNIPHLLFSGPPGTGKTATAIALARDL 62
Query: 61 FGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQME 120
FG +R +E+ SD D V++ +KE A+
Sbjct: 63 FGEN-WRDNF-----------------------IEMNASDERGID--VVRHKIKEFARTA 96
Query: 121 QVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAP 180
+ +K + ++EA++LT DAQAALRRTME YSK+ R I+ C+ +S II P
Sbjct: 97 PIG--------GAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEP 148
Query: 181 IKSRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESM 240
I+SRC + R + L ++ E +++ T+D L+ + S G+ R ++ L+
Sbjct: 149 IQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKI-TEDGLEALIYISGGDFRKAINALQGA 207
Query: 241 ALNNELALKSSSPIIKPDWIIVIHKLTR-----KIVKERSVNSLIECRAVLYDLLA-HCI 294
A E ++ D I I R ++++ + +E R +L L+ + +
Sbjct: 208 AAIGE--------VVDADTIYQITATARPEEMTELIQTALKGNFMEARELLDRLMVEYGM 259
Query: 295 PANIILKELTFSLLDVETLNTTNKSSIIEYSSVFDERLSLGNKAIFHLEGFIA 347
I+ +L ++ + + + K +I+ D RL+ G L+ ++A
Sbjct: 260 SGEDIVAQLFREIISM-PIKDSLKVQLIDKLGEVDFRLTEGANERIQLDAYLA 311
>1IQP-A nrPDB
Length = 327
Score = 294 bits (753), Expect = 3e-80, Method: Composition-based stats.
Identities = 91/346 (26%), Positives = 164/346 (47%), Gaps = 41/346 (11%)
Query: 4 WVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGP 63
WV+KYRP+ L+ + E + LK + +PHLL GP G GK T +AL +FG
Sbjct: 15 WVEKYRPQRLDDIVGQEHIVKRLKHYV-KTGSMPHLLFAGPPGVGKTTAALALARELFGE 73
Query: 64 GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVD 123
+R LE+ SD + VI+E +KE A+ + +
Sbjct: 74 N-WRHNF-----------------------LELNASDERGIN--VIREKVKEFARTKPIG 107
Query: 124 FQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKS 183
+K + ++EA++LT+DAQ ALRRTME +S N+R I+ C+ S II PI+S
Sbjct: 108 --------GASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS 159
Query: 184 RCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALN 243
RC + R D +I+ L + NE ++L T++ L+ I + G++R ++ +L++ A
Sbjct: 160 RCAIFRFRPLRDEDIAKRLRYIAENEGLEL-TEEGLQAILYIAEGDMRRAINILQAAAAL 218
Query: 244 NELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYD-LLAHCIPANIILKE 302
++ + ++ + R+++ + ++ R L + LL + +L +
Sbjct: 219 DKKITDENVFMVASRA--RPEDI-REMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQ 275
Query: 303 LTFSLLDVETLNTTNKSSIIEYSSVFDERLSLGNKAIFHLEGFIAK 348
+ + ++ + K + + ++ RL G I LE +A+
Sbjct: 276 MHKEVFNL-PIEEPKKVLLADKIGEYNFRLVEGANEIIQLEALLAQ 320
>2CHG-A nrPDB
Length = 226
Score = 279 bits (712), Expect = 2e-75, Method: Composition-based stats.
Identities = 78/267 (29%), Positives = 128/267 (47%), Gaps = 44/267 (16%)
Query: 1 MSLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60
+WV+KYRP++L+ + +E+ LK ++ +++PHLL GP GTGK +AL +
Sbjct: 4 FEIWVEKYRPRTLDEVVGQDEVIQRLKGYVER-KNIPHLLFSGPPGTGKTATAIALARDL 62
Query: 61 FGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQME 120
FG +R +E+ SD D V++ +KE A+
Sbjct: 63 FGEN-WRDNF-----------------------IEMNASDERGID--VVRHKIKEFARTA 96
Query: 121 QVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAP 180
+ +K + ++EA++LT DAQAALRRTME YSK+ R I+ C+ +S II P
Sbjct: 97 PIG--------GAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEP 148
Query: 181 IKSRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESM 240
I+SRC + R + L ++ E +++ T+D L+ + S G+ R ++ L+
Sbjct: 149 IQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKI-TEDGLEALIYISGGDFRKAINALQGA 207
Query: 241 ALNNELALKSSSPIIKPDWIIVIHKLT 267
A E ++ D I I
Sbjct: 208 AAIGE--------VVDADTIYQITATA 226
>1SXJ-B nrPDB
Length = 323
Score = 246 bits (628), Expect = 1e-65, Method: Composition-based stats.
Identities = 85/349 (24%), Positives = 156/349 (44%), Gaps = 46/349 (13%)
Query: 4 WVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGP 63
WV+KYRP+ L+ + N+E + L+ ++ + ++PH+++ G G GK T L + G
Sbjct: 11 WVEKYRPQVLSDIVGNKETIDRLQQIA-KDGNMPHMIISGMPGIGKTTSVHCLAHELLG- 68
Query: 64 GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVD 123
R + LE+ SD D V++ +K AQ +++
Sbjct: 69 ---------RSYADGV--------------LELNASDDRGID--VVRNQIKHFAQ-KKLH 102
Query: 124 FQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKS 183
K +K VI++EA+S+T AQ ALRRTME YS + R C+ + II P++S
Sbjct: 103 LPPGK------HKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQS 156
Query: 184 RCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALN 243
+C ++R SD ++ L ++ E ++ T D L+ I + G++R ++ L+S
Sbjct: 157 QCAILRYSKLSDEDVLKRLLQIIKLEDVKY-TNDGLEAIIFTAEGDMRQAINNLQSTVAG 215
Query: 244 NELALKSSSPIIKPDWIIVIHKLTRK-IVKERSVNSLIE--CRAVLYDLLAHCIPANIIL 300
+ L + D + I IVK+ + S +E + + DL + I+
Sbjct: 216 HGL--------VNADNVFKIVDSPHPLIVKKMLLASNLEDSIQILRTDLWKKGYSSIDIV 267
Query: 301 KELTFSLLDVETLNTTNKSSIIEYSSVFDERLSLGNKAIFHLEGFIAKV 349
++ + + + +I+ + R+ G L +AK+
Sbjct: 268 TTSFRVTKNLAQVKESVRLEMIKEIGLTHMRILEGVGTYLQLASMLAKI 316
>1SXJ-C nrPDB
Length = 340
Score = 237 bits (605), Expect = 5e-63, Method: Composition-based stats.
Identities = 83/349 (23%), Positives = 154/349 (44%), Gaps = 39/349 (11%)
Query: 4 WVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGP 63
WV+KYRP++L+ + E+ ++ D+ + LPHLL YGP GTGK + +AL I+G
Sbjct: 15 WVEKYRPETLDEVYGQNEVITTVRKFVDEGK-LPHLLFYGPPGTGKTSTIVALAREIYGK 73
Query: 64 GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVD 123
SN LELN SD D V++ +K+ A Q+
Sbjct: 74 NY-------------SNMVLELN-----------ASDDRGID--VVRNQIKDFASTRQI- 106
Query: 124 FQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKS 183
+ +K +I++EA+++T AQ ALRR +E+Y+KN R ++ + + + S
Sbjct: 107 -------FSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLS 159
Query: 184 RCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLES--MA 241
+C R I +++V+ +E+++L + + K + + SNG++R L +L+S
Sbjct: 160 QCTRFRFQPLPQEAIERRIANVLVHEKLKL-SPNAEKALIELSNGDMRRVLNVLQSCKAT 218
Query: 242 LNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDL-LAHCIPANIIL 300
L+N + S +I + ++K + L + A + ++
Sbjct: 219 LDNPDEDEISDDVIYECCGAPRPSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLI 278
Query: 301 KELTFSLLDVETLNTTNKSSIIEYSSVFDERLSLGNKAIFHLEGFIAKV 349
+ + L D E N + ++ + + +S G I +
Sbjct: 279 EGIVKILEDYELQNEETRVHLLTKLADIEYSISKGGNDQIQGSAVIGAI 327
>3U5Z-B nrPDB
Length = 324
Score = 223 bits (567), Expect = 1e-58, Method: Composition-based stats.
Identities = 77/345 (22%), Positives = 134/345 (38%), Gaps = 91/345 (26%)
Query: 6 DKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGP-NGTGKKTRCMALLESIFGPG 64
KYRP +++ KS++ + + +PH++L+ P GTGK T AL +
Sbjct: 18 QKYRPSTIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDV---- 72
Query: 65 VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDF 124
D+ FV S+ K++ ++ L A D
Sbjct: 73 ----NADM-MFVNGSDCKIDF-----------------------VRGPLTNFASAASFD- 103
Query: 125 QDSKDGLAHRYKCVIINEAN-SLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKS 183
R K ++I+E + S ++Q LR ME YS N +I+ +++ II P++S
Sbjct: 104 --------GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQS 155
Query: 184 RCLLIRCPAPSDSEI-------STILSDVVTNERIQLET------------KDILKRIA- 223
RC +I P+D + L+++ +E I + D K I
Sbjct: 156 RCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGE 215
Query: 224 ---QASNGNLRVSLL------------MLESMALNNELALKSSSPIIKPDWIIVIHKLTR 268
+S G L +L +LES+ + L++ +P D+ + KL
Sbjct: 216 LDSYSSKGVLDAGILSLVTNDRGAIDDVLESLKNKDVKQLRALAPKYAADYSWFVGKLAE 275
Query: 269 KIVKERSVNSLIECRAVLYDLLA-----HCIPANIILKELTFSLL 308
+I + S+I +Y+++ H I AN EL + L
Sbjct: 276 EIYSRVTPQSIIR----MYEIVGENNQYHGIAANT---ELHLAYL 313
>3GLF-B nrPDB
Length = 395
Score = 158 bits (400), Expect = 3e-39, Method: Composition-based stats.
Identities = 49/303 (16%), Positives = 112/303 (36%), Gaps = 20/303 (6%)
Query: 1 MSLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60
+ K+RP++ + E + L + R L G G GK + L + +
Sbjct: 25 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 84
Query: 61 FGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQME 120
+ T + +++ D + ++ L + Q
Sbjct: 85 --------NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA 136
Query: 121 QVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAP 180
R+K +I+E + L++ + AL +T+E+ ++++ ++ +
Sbjct: 137 P---------ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 187
Query: 181 IKSRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESM 240
I SRCL A +I L ++ E I E + L+ +A+A+ G+LR +L + +
Sbjct: 188 ILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPR-ALQLLARAAEGSLRDALSLTDQA 246
Query: 241 ALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIIL 300
+ + + + + + + +V+ + A++ + A I +L
Sbjct: 247 IASGDGQVSTQA--VSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALL 304
Query: 301 KEL 303
E+
Sbjct: 305 VEM 307
>1NJG-A nrPDB
Length = 250
Score = 153 bits (387), Expect = 9e-38, Method: Composition-based stats.
Identities = 43/252 (17%), Positives = 96/252 (38%), Gaps = 18/252 (7%)
Query: 1 MSLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60
+ K+RP++ + E + L + R L G G GK + L + +
Sbjct: 10 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69
Query: 61 FGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQME 120
+ T + +++ D + ++ L + Q
Sbjct: 70 --------NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA 121
Query: 121 QVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAP 180
R+K +I+E + L++ + AL +T+E+ ++++ ++ +
Sbjct: 122 P---------ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 172
Query: 181 IKSRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESM 240
I SRCL A +I L ++ E I E + L+ +A+A+ G+LR +L + +
Sbjct: 173 ILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPR-ALQLLARAAEGSLRDALSLTDQA 231
Query: 241 ALNNELALKSSS 252
+ + + + +
Sbjct: 232 IASGDGQVSTQA 243
>1SXJ-A nrPDB
Length = 516
Score = 85.7 bits (210), Expect = 3e-17, Method: Composition-based stats.
Identities = 45/256 (17%), Positives = 97/256 (37%), Gaps = 50/256 (19%)
Query: 2 SLWVDKYRPKSLNALSHNEELTNFLKSLS-----DQPRDLPHL-----------LLYGPN 45
LW KY P +L + N+ LK+ + H +LYGP
Sbjct: 27 KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPP 86
Query: 46 GTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNND 105
G GK T + + + LE SD+ +
Sbjct: 87 GIGKTTAAHLVAQEL-----------------------------GYDILEQNASDVRSKT 117
Query: 106 RIV--IQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSK 163
+ ++ L ++ + + L ++ +I++E + ++ + + + + K
Sbjct: 118 LLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK 177
Query: 164 -NIRLIMVCDSMS-PIIAPIKSRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKR 221
+ LI++C+ + P + P CL I+ P + I + L + E+ +L+ +++ R
Sbjct: 178 TSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD-PNVIDR 236
Query: 222 IAQASNGNLRVSLLML 237
+ Q + G++R + +L
Sbjct: 237 LIQTTRGDIRQVINLL 252
>3PVS-A nrPDB
Length = 447
Score = 70.3 bits (170), Expect = 1e-12, Method: Composition-based stats.
Identities = 47/262 (17%), Positives = 88/262 (33%), Gaps = 57/262 (21%)
Query: 7 KYRPKSLNALSHNEELTNFLKSL--SDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPG 64
+ RP++L + L K L + + L ++L+GP GTGK T +
Sbjct: 19 RMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIAR------ 72
Query: 65 VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDF 124
DV + ++ E I+E ++ Q
Sbjct: 73 --YANADVERISAVTSGVKE------------------------IREAIERARQNRN--- 103
Query: 125 QDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVC--DSMSPIIAPIK 182
A R + ++E + K Q A +E I I + + + +
Sbjct: 104 -------AGRRTILFVDEVHRFNKSQQDAFLPHIE--DGTITFIGATTENPSFELNSALL 154
Query: 183 SRCLLIRCPAPSDSEISTILSDVVTNERIQLE------TKDILKRIAQASNGNLRVSLLM 236
SR + + S +I +L+ + ++ + + IA+ NG+ R +L
Sbjct: 155 SRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214
Query: 237 LESMALNNEL---ALKSSSPII 255
LE MA E+ + P +
Sbjct: 215 LEMMADMAEVDDSGKRVLKPEL 236
>1HQC-A nrPDB
Length = 324
Score = 65.6 bits (158), Expect = 3e-11, Method: Composition-based stats.
Identities = 45/248 (18%), Positives = 79/248 (31%), Gaps = 70/248 (28%)
Query: 9 RPKSLNALSHNEELTNFLKSLSDQPRD----LPHLLLYGPNGTGKKTRCMALLESIFGPG 64
RPK+L+ E L L+ + + L HLLL+GP G GK T + +
Sbjct: 7 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL---- 62
Query: 65 VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDF 124
+ L V S P A + D
Sbjct: 63 -----------------GVNLRVTSGP-------------------------AIEKPGDL 80
Query: 125 QDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNI----------------RLI 168
+ I+E + L++ A+ L ME + +I R
Sbjct: 81 AAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT 140
Query: 169 M--VCDSMSPIIAPIKSRCLLI-RCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQA 225
+ I AP+ SR ++ + E++ + +++ + L+ I +
Sbjct: 141 LIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALE-IGRR 199
Query: 226 SNGNLRVS 233
S G +RV+
Sbjct: 200 SRGTMRVA 207
>4D81-A nrPDB
Length = 283
Score = 51.8 bits (122), Expect = 5e-07, Method: Composition-based stats.
Identities = 42/265 (15%), Positives = 80/265 (30%), Gaps = 36/265 (13%)
Query: 5 VDKYRPK-SLNALSHNEELTNFLKSLSDQPRDLPHL---------LLYGPNGTGKKTRCM 54
V K +PK +LN + E++ LK P P L LLYGP G GK
Sbjct: 4 VMKEKPKVTLNEIVGLEDVKEALKEAVVYPSKRPDLFPLGWPRGILLYGPPGCGKTMIAA 63
Query: 55 ALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLK 114
A+ + ++ + K + + L + + LL
Sbjct: 64 AVANELDSEFIHVDAASIMSKWLGEAEKNVAKIFKTARELSKKENKPAIIFIDELDALLA 123
Query: 115 EVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSM 174
S+ G R + + E + L + + +I +
Sbjct: 124 SY---------TSEVGGEARVRNQFLKEMDGLADKNE----------ISKVYVIGATNKP 164
Query: 175 SPIIAPIKSRC-LLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNG----N 229
+ P R I P + +L + ++L+ L+ +A+ ++G +
Sbjct: 165 WRLDEPFLRRFQKRIYITLPDKAHRLELLKHYSSK--VKLDPNVNLEELAELTDGYTASD 222
Query: 230 LRVSLLMLESMALNNELALKSSSPI 254
+R + + P
Sbjct: 223 IRDIVQSAHMRVVKEMFEKNLQEPR 247
>2XSZ-D nrPDB
Length = 378
Score = 51.0 bits (120), Expect = 7e-07, Method: Composition-based stats.
Identities = 36/242 (14%), Positives = 89/242 (36%), Gaps = 41/242 (16%)
Query: 39 LLLYGPNGTGKKTRCMALLE--------------SIFGPGVYRLKIDVRQFVTASNRKLE 84
+L+ G GTGK M + + IF + + + + F + +++
Sbjct: 88 VLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIK 147
Query: 85 LNVVSSPYHLEITPSDMGNN-----------DRIVIQELLKEVAQMEQVDFQDSKDGLAH 133
+ + + D+ N+ D I+ ++E + ++++
Sbjct: 148 EGPPGVVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEII 207
Query: 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCD------------SMSPIIAPI 181
+ I+E + L ++ + L R +E + LIM + S I +
Sbjct: 208 P-GVLFIDEVHMLDIESFSFLNRALESDMAPV-LIMATNRGITRIRGTSYQSPHGIPIDL 265
Query: 182 KSRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQAS-NGNLRVSLLMLESM 240
R L++ S+ + IL E +++ ++D + + +LR ++ ++ +
Sbjct: 266 LDRLLIVSTTPYSEKDTKQILRIRCEEEDVEM-SEDAYTVLTRIGLETSLRYAIQLITAA 324
Query: 241 AL 242
+L
Sbjct: 325 SL 326
>1IN6-A nrPDB
Length = 334
Score = 47.9 bits (112), Expect = 7e-06, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 5 VDKYRPKSLNALSHNEELTNFL----KSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60
V RPKSL+ E + L ++ + L H+LL GP G G+ T + +
Sbjct: 16 VQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGRTTLAHIIASEL 75
>4LGM-A nrPDB
Length = 295
Score = 47.9 bits (112), Expect = 7e-06, Method: Composition-based stats.
Identities = 40/231 (17%), Positives = 73/231 (31%), Gaps = 32/231 (13%)
Query: 9 RPK-SLNALSHNEELTNFLKSLSDQPRDLPHL---------LLYGPNGTGKKTRCMALLE 58
+PK S + +++ L+ P P L LLYGP G GK A+
Sbjct: 20 KPKVSFKDIVGLDDVKEALREAIIYPTKRPDLFPLGWPRGILLYGPPGCGKTMIAAAVAN 79
Query: 59 SIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQ 118
I + V K NV S N I+ + L
Sbjct: 80 EIDSIFMQLDAASVMSKWLGEAEKNVANVFKMARE----ESKKQNKPAIIFIDQL----- 130
Query: 119 MEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPII 178
+ ++ G R + + E + L ++ + +I + +
Sbjct: 131 DALLGVYSTEVGGEARVRNQFLKEMDGLLDKSENY----------KVYVIGATNKPWRLD 180
Query: 179 APIKSRC-LLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNG 228
R I P P + ++ + I+L+T+ L+ +A+ + G
Sbjct: 181 EAFLRRFQKRIYVPLPDYEQRLSLFKYYTSK--IKLDTEVSLEELAKLTEG 229
>2XSZ-A nrPDB
Length = 367
Score = 46.8 bits (109), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/257 (16%), Positives = 91/257 (35%), Gaps = 45/257 (17%)
Query: 39 LLLYGPNGTGKKTRCMALLESI--------------FGPGVYRLKIDVRQFVTASNRKLE 84
+LL GP GTGK +A+ + + + + + ++ + F A +++
Sbjct: 80 VLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIK 139
Query: 85 LNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQ-MEQVDFQDSKDGLAHRYKCV----- 138
+ + D+ N Q++L + Q M+ + + K V
Sbjct: 140 EGPPGIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYID 199
Query: 139 -----------IINEANSLTKDAQAALRRTMEK-------YSKNIRLIMV-----CDSMS 175
++E + L + L R +E ++ N ++ S
Sbjct: 200 QGIAELVPGVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPH 259
Query: 176 PIIAPIKSRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQA-SNGNLRVSL 234
I + R ++IR + E+ I+ E I + +++ L + + + LR S+
Sbjct: 260 GIPLDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGINI-SEEALNHLGEIGTKTTLRYSV 318
Query: 235 LMLESMALNNELALKSS 251
+L L ++ K S
Sbjct: 319 QLLTPANLLAKINGKDS 335
>6EMW-B nrPDB
Length = 225
Score = 44.1 bits (102), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 51/154 (33%), Gaps = 34/154 (22%)
Query: 14 NALSHNEELTNFLKSLSDQPRD--------LPHLLLYGPNGTGKKTRCMALLESIFGPGV 65
+ ++ N + + R + + GP G GK AL ES+FG
Sbjct: 21 ERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGDDD 80
Query: 66 YRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQ 125
+++D+ +F + + + P +G++D + E ++
Sbjct: 81 AMIRVDMSEF---------MEKHAVSRLVGAPPGYVGHDDGGQLTEKVRR---------- 121
Query: 126 DSKDGLAHRYKCVIINEANSLTKDAQAALRRTME 159
Y ++ +E D L + ++
Sbjct: 122 -------KPYSVILFDEIEKAHPDVFNILLQVLD 148
>4LCB-A nrPDB
Length = 367
Score = 42.5 bits (98), Expect = 3e-04, Method: Composition-based stats.
Identities = 44/263 (16%), Positives = 84/263 (31%), Gaps = 37/263 (14%)
Query: 7 KYRPK-SLNALSHNEELTNFLKSLSDQPRDLPHL---------LLYGPNGTGKKTRCMAL 56
K +PK S + + +++ LK P P L LLYGP G GK A+
Sbjct: 91 KEKPKVSFSDIVGLDDVKEALKEAIIYPSKRPDLFPLGWPRGILLYGPPGNGKTMLAAAV 150
Query: 57 LESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEV 116
I Y + +D ++ + E NV I + E+
Sbjct: 151 ANEI---DSYFIHVDAASIMSKWLGEAEKNVAKIFNTAREYSKKDNKPAIIFVDEI---- 203
Query: 117 AQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSP 176
+ S+ G R + + E + + + + + +I +
Sbjct: 204 --DALLGTYTSEVGGEVRVRNQFLKEMDGIMDKNENYM----------VYVIGATNKPWR 251
Query: 177 IIAPIKSRC-LLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNG----NLR 231
+ P R I P P ++ + + ++L D L+ +A+ + G ++R
Sbjct: 252 LDEPFLRRFQKRIYVPLPDFNQRLALFKYYTSK--VKLGNVD-LQELAKMTEGYSASDIR 308
Query: 232 VSLLMLESMALNNELALKSSSPI 254
+ + S P
Sbjct: 309 DIVQSAHMRVVKEMFEKNLSEPR 331
>6B5C-A nrPDB
Length = 307
Score = 42.5 bits (98), Expect = 3e-04, Method: Composition-based stats.
Identities = 43/304 (14%), Positives = 92/304 (30%), Gaps = 52/304 (17%)
Query: 14 NALSHNEELTNFLKSLSDQPRDLPH-----------LLLYGPNGTGKKTRCMALLESIFG 62
+ ++ EE L+ P +P +L+ GP GTGK A+
Sbjct: 25 DDIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGT 84
Query: 63 PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV 122
+ + KL + T + D I + +
Sbjct: 85 TFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDQIDSICSRRGTSD------- 137
Query: 123 DFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIK 182
+ + R K ++ + + + + + SK + ++ + I ++
Sbjct: 138 -----EHEASRRVKSELLIQMDGVGGALEN------DDPSKMVMVLAATNFPWDIDEALR 186
Query: 183 SRC-LLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNG------------- 228
R I P P+ + +L + ++L+ L+ IA+ G
Sbjct: 187 RRLEKRIYIPLPTAKGRAELLK--INLREVELDPDIQLEDIAEKIEGYSGADITNVCRDA 244
Query: 229 ---NLRVSLLMLESMALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAV 285
+R + L + + P+ K D+ + +KI K S L +
Sbjct: 245 SLMAMRRRINGLSPEEIRALSKEELQMPVTKGDFELA----LKKIAKSVSAADLEKYEKW 300
Query: 286 LYDL 289
+ +
Sbjct: 301 MVEF 304
>6EM8-A nrPDB
Length = 818
Score = 42.5 bits (98), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 51/154 (33%), Gaps = 34/154 (22%)
Query: 14 NALSHNEELTNFLKSLSDQPRD--------LPHLLLYGPNGTGKKTRCMALLESIFGPGV 65
+ ++ N + + R + + GP G GK AL ES+FG
Sbjct: 508 ERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGDDD 567
Query: 66 YRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQ 125
+++D+ +F + + + P +G++D + E ++
Sbjct: 568 AMIRVDMSEF---------MEKHAVSRLVGAPPGYVGHDDGGQLTEKVRR---------- 608
Query: 126 DSKDGLAHRYKCVIINEANSLTKDAQAALRRTME 159
Y ++ +E D L + ++
Sbjct: 609 -------KPYSVILFDEIEKAHPDVFNILLQVLD 635
Score = 34.8 bits (78), Expect = 0.061, Method: Composition-based stats.
Identities = 46/284 (16%), Positives = 101/284 (35%), Gaps = 44/284 (15%)
Query: 12 SLNALSHNE-ELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKI 70
+L+ + + E+T ++ LS + ++ P L+ G G GK L ++I V
Sbjct: 178 TLDPVIGRDKEITRVIEVLSRRTKNNPVLI--GEPGVGKTAIAEGLAQAIVNNEVPETLK 235
Query: 71 DVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDG 130
D R V+S + + ++++++E+ Q V
Sbjct: 236 DKR-------------VMSLDMGTVVAGTKYRGEFEERLKKVMEEIQQAGNV-------- 274
Query: 131 LAHRYKCVIINEANSL--TKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSRCLLI 188
+ I+E ++L A+ A+ + R + C + +
Sbjct: 275 ------ILFIDELHTLVGAGGAEGAIDASNILKPALARGELQCIGATTLDE--------Y 320
Query: 189 RCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALNNELAL 248
R D+ + V +E ++T ILK + + R+++ E++ +L+
Sbjct: 321 RKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISD-EAIEAAVKLSN 379
Query: 249 KSSSPIIKPDWIIVIHKLT---RKIVKERSVNSLIECRAVLYDL 289
+ S PD I + ++ + N+L E + +
Sbjct: 380 RYVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQEIEKV 423
>6QI9-D nrPDB
Length = 463
Score = 42.1 bits (97), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/179 (16%), Positives = 71/179 (39%), Gaps = 21/179 (11%)
Query: 77 TASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYK 136
T S ++++ + L + D G V +++ +VA+ + + G
Sbjct: 241 TVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPG------ 294
Query: 137 CVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCD------------SMSPIIAPIKSR 184
+ I+E + L ++ + L R +E + LIM + S I + R
Sbjct: 295 VLFIDEVHMLDIESFSFLNRALESDMAPV-LIMATNRGITRIRGTSYQSPHGIPIDLLDR 353
Query: 185 CLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQAS-NGNLRVSLLMLESMAL 242
L++ S+ + IL E +++ ++D + + +LR ++ ++ + +L
Sbjct: 354 LLIVSTTPYSEKDTKQILRIRCEEEDVEM-SEDAYTVLTRIGLETSLRYAIQLITAASL 411
Score = 28.7 bits (62), Expect = 4.2, Method: Composition-based stats.
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 1/73 (1%)
Query: 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITP 98
+L+ G GTGK M + +++ GP I + + K E + + +
Sbjct: 73 VLIAGQPGTGKTAIAMGMAQAL-GPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRI 131
Query: 99 SDMGNNDRIVIQE 111
+ + E
Sbjct: 132 KEETEIIEGEVVE 144
>5WC0-A nrPDB
Length = 472
Score = 41.8 bits (96), Expect = 4e-04, Method: Composition-based stats.
Identities = 34/167 (20%), Positives = 59/167 (35%), Gaps = 20/167 (11%)
Query: 12 SLNALSHNEELTNFLKSLSDQPRDLPH-----------LLLYGPNGTGKKTRCMALLESI 60
SL+ + ++ L P +P ++L GP GTGK A+
Sbjct: 191 SLDDIIGMHDVKQVLHEAVTLPLLVPEFFQGLRSPWKAMVLAGPPGTGKTLIARAIASES 250
Query: 61 FGPGVYRLKIDVRQFVTASNRKL-----ELNVVSSPYHLEITPSDMGNNDRIVIQELLKE 115
D+ + K+ EL +P + I D R E E
Sbjct: 251 SSTFFTVSSTDLSSKWRGDSEKIVRLLFELARFYAPSIIFIDQIDTLGGQRGNSGEH--E 308
Query: 116 VAQMEQVDFQDSKDGLAHRY--KCVIINEANSLTKDAQAALRRTMEK 160
++ + +F DG +++ + V + A ++ + ALRR EK
Sbjct: 309 ASRRVKSEFLVQMDGSQNKFDSRRVFVLAATNIPWELDEALRRRFEK 355
>6B5D-A nrPDB
Length = 309
Score = 41.8 bits (96), Expect = 5e-04, Method: Composition-based stats.
Identities = 34/167 (20%), Positives = 59/167 (35%), Gaps = 20/167 (11%)
Query: 12 SLNALSHNEELTNFLKSLSDQPRDLPH-----------LLLYGPNGTGKKTRCMALLESI 60
SL+ + ++ L P +P ++L GP GTGK A+
Sbjct: 28 SLDDIIGMHDVKQVLHEAVTLPLLVPEFFQGLRSPWKAMVLAGPPGTGKTLIARAIASES 87
Query: 61 FGPGVYRLKIDVRQFVTASNRKL-----ELNVVSSPYHLEITPSDMGNNDRIVIQELLKE 115
D+ + K+ EL +P + I D R E E
Sbjct: 88 SSTFFTVSSTDLSSKWRGDSEKIVRLLFELARFYAPSIIFIDEIDTLGGQRGNSGEH--E 145
Query: 116 VAQMEQVDFQDSKDGLAHRY--KCVIINEANSLTKDAQAALRRTMEK 160
++ + +F DG +++ + V + A ++ + ALRR EK
Sbjct: 146 ASRRVKSEFLVQMDGSQNKFDSRRVFVLAATNIPWELDEALRRRFEK 192
>1XXI-E nrPDB
Length = 334
Score = 41.8 bits (96), Expect = 5e-04, Method: Composition-based stats.
Identities = 34/169 (20%), Positives = 56/169 (33%), Gaps = 22/169 (13%)
Query: 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITP 98
LL+ G G AL + K +L + + P + + P
Sbjct: 27 LLIQALPGMGDDALIYALSRYLLCQQPQGHK----SCGHCRGCQL-MQAGTHPDYYTLAP 81
Query: 99 SDMGN----NDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAAL 154
N + + E L E A++ K V + +A LT A AL
Sbjct: 82 EKGKNTLGVDAVREVTEKLNEHARL-------------GGAKVVWVTDAALLTDAAANAL 128
Query: 155 RRTMEKYSKNIRLIMVCDSMSPIIAPIKSRCLLIRCPAPSDSEISTILS 203
+T+E+ + ++A ++SRC L P + T LS
Sbjct: 129 LKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLS 177
>6AP1-A nrPDB
Length = 519
Score = 41.4 bits (95), Expect = 6e-04, Method: Composition-based stats.
Identities = 32/160 (20%), Positives = 56/160 (35%), Gaps = 13/160 (8%)
Query: 14 NALSHNEELTNFLKSLSDQPRDLPHL-----------LLYGPNGTGKKTRCMALLESIFG 62
++ E LK P PHL LLYGP GTGK A+
Sbjct: 34 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS 93
Query: 63 PGVYRLKIDVRQFVTASNRKL--ELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQME 120
D+ + KL +L ++ I D + E E ++
Sbjct: 94 TFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEGESEASRRI 153
Query: 121 QVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEK 160
+ + +G+ + + V++ A ++ +A+RR E+
Sbjct: 154 KTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFER 193
>5VHP-C nrPDB
Length = 266
Score = 41.4 bits (95), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/214 (15%), Positives = 68/214 (31%), Gaps = 38/214 (17%)
Query: 5 VDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHL------------LLYGPNGTGKKTR 52
V+K + + ++ +K + + P P L LLYGP GTGK
Sbjct: 11 VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLL 70
Query: 53 CMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQEL 112
A+ V+ S + + E+ + I+ +
Sbjct: 71 ARAVAH---------HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 121
Query: 113 LKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCD 172
+ + ++ D R ++N+ + +KNI++IM +
Sbjct: 122 IDSIGSSR-LEGGSGGDSEVQRTMLELLNQLDGFEA-------------TKNIKVIMATN 167
Query: 173 SMSPIIAPIKSRCLL---IRCPAPSDSEISTILS 203
+ + + + + I P P++ IL
Sbjct: 168 RIDILDSALLRPGRIDRKIEFPPPNEEARLDILK 201
>3K1J-A nrPDB
Length = 604
Score = 41.4 bits (95), Expect = 6e-04, Method: Composition-based stats.
Identities = 49/294 (16%), Positives = 94/294 (31%), Gaps = 80/294 (27%)
Query: 11 KSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGV----- 65
K ++ + E +K+ ++Q R H+LL G GTGK A+ E + +
Sbjct: 38 KLIDQVIGQEHAVEVIKTAANQKR---HVLLIGEPGTGKSMLGQAMAELLPTETLEDILV 94
Query: 66 --------------------------YRLKIDVRQFVTASNRKLELNVV----------- 88
YR K ++ V +SN +L+ V+
Sbjct: 95 FPNPEDENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGR 154
Query: 89 SSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYK-CVIINEANSLT 147
+ ++ T + G V + + + + +K + I+E +L+
Sbjct: 155 TKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATLS 214
Query: 148 KDAQAALRRTM-----------EKYSKN--------IRLIMVC----DSMSPIIAPIKSR 184
Q +L M E S ++V D++ + ++SR
Sbjct: 215 LKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHPALRSR 274
Query: 185 CL------LIRCPAPSDSEISTILSDVVTNE-----RIQLETKDILKRIAQASN 227
+R P E L V E +I TK+ ++ I + +
Sbjct: 275 IRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQ 328
>5M32-h nrPDB
Length = 355
Score = 41.4 bits (95), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/214 (15%), Positives = 68/214 (31%), Gaps = 38/214 (17%)
Query: 5 VDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHL------------LLYGPNGTGKKTR 52
V+K + + ++ +K + + P P L LLYGP GTGK
Sbjct: 103 VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLL 162
Query: 53 CMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQEL 112
A+ V+ S + + E+ + I+ +
Sbjct: 163 ARAVAH---------HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 213
Query: 113 LKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCD 172
+ + ++ D R ++N+ + +KNI++IM +
Sbjct: 214 IDSIGSSR-LEGGSGGDSEVQRTMLELLNQLDGFEA-------------TKNIKVIMATN 259
Query: 173 SMSPIIAPIKSRCLL---IRCPAPSDSEISTILS 203
+ + + + + I P P++ IL
Sbjct: 260 RIDILDSALLRPGRIDRKIEFPPPNEEARLDILK 293
>5EQT-A nrPDB
Length = 257
Score = 41.0 bits (94), Expect = 8e-04, Method: Composition-based stats.
Identities = 42/249 (16%), Positives = 80/249 (32%), Gaps = 75/249 (30%)
Query: 12 SLNALSHNEELTNFLKSLSDQPRDLPHL------------LLYGPNGTGKKTRCMALLES 59
+ N + ++ L+ + P P L LLYGP G GK AL
Sbjct: 3 TYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKALAHE 62
Query: 60 IFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQM 119
+ + + ++++ + E A++
Sbjct: 63 V------------------------------------NATFIRVVGSELVRKYIGEGARL 86
Query: 120 EQVDFQDSKDGLAHRYKCVIINEANSL-------TKDAQAALRRTM-----EK----YSK 163
F+ +K+ + I+E +++ T + + RT+ E
Sbjct: 87 VHELFELAKEKAPT---IIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRG 143
Query: 164 NIRLIMVCDSMSPIIAPIKSRCLLI----RCPAPSDSEISTILSDVVTNERIQLETKDIL 219
N+++I + I+ P R P P IL V R++L+ D L
Sbjct: 144 NVKVIAATNRPD-ILDPALLRPGRFDRLIEVPLPDFEGRLEILK--VHTRRMKLKGVD-L 199
Query: 220 KRIAQASNG 228
+ IA+ + G
Sbjct: 200 RAIAEMTEG 208
>4YPL-A nrPDB
Length = 555
Score = 41.0 bits (94), Expect = 8e-04, Method: Composition-based stats.
Identities = 29/248 (11%), Positives = 74/248 (29%), Gaps = 53/248 (21%)
Query: 6 DKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGV 65
D Y K + L D P L+L GP G GK + ++ S+
Sbjct: 80 DHYGLKDVKERILEYLAVRQLTQGLDVRNKAPILVLVGPPGVGKTSLGRSIARSM----- 134
Query: 66 YRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQ 125
++ L V + + +K+V +
Sbjct: 135 -----------NRKFHRISLGGVRDEAEIRGHRRTYIGAMPGKLIHAMKQVGVINP---- 179
Query: 126 DSKDGLAHRYKCVIINEANSLTK----DAQAALRRTMEKYSKNI---------------R 166
+++++ + ++ D +A+ ++ N
Sbjct: 180 -----------VILLDQIDKMSSDWRGDPASAMLEVLDPEQNNTFTDHYLDVPYDLSKVF 228
Query: 167 LIMVCDSMSPIIAPIKSRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQAS 226
I +++ I P+ R +I P ++ E I + ++++ + ++ + +
Sbjct: 229 FITTANTLQTIPRPLLDRMEVIEIPGYTNMEKQAIARQYLWPKQVR---ESGMEGRIEVT 285
Query: 227 NGNLRVSL 234
+ + +
Sbjct: 286 DAAILRVI 293
>5GJQ-J nrPDB
Length = 406
Score = 41.0 bits (94), Expect = 8e-04, Method: Composition-based stats.
Identities = 33/214 (15%), Positives = 68/214 (31%), Gaps = 38/214 (17%)
Query: 5 VDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHL------------LLYGPNGTGKKTR 52
V+K + + ++ +K + + P P L LLYGP GTGK
Sbjct: 140 VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLL 199
Query: 53 CMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQEL 112
A+ V+ S + + E+ + I+ +
Sbjct: 200 ARAVAH---------HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 250
Query: 113 LKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCD 172
+ + ++ D R ++N+ + +KNI++IM +
Sbjct: 251 IDSIGSSR-LEGGSGGDSEVQRTMLELLNQLDGFEA-------------TKNIKVIMATN 296
Query: 173 SMSPIIAPIKSRCLL---IRCPAPSDSEISTILS 203
+ + + + + I P P++ IL
Sbjct: 297 RIDILDSALLRPGRIDRKIEFPPPNEEARLDILK 330
>3JCO-J nrPDB
Length = 405
Score = 41.0 bits (94), Expect = 9e-04, Method: Composition-based stats.
Identities = 41/217 (18%), Positives = 72/217 (33%), Gaps = 44/217 (20%)
Query: 5 VDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHL------------LLYGPNGTGKKTR 52
V+K + + + + +K + + P P L +LYGP GTGK
Sbjct: 139 VEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLL 198
Query: 53 CMALLESIFGPGVYRLKIDVRQ--FVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQ 110
A+ + ++ Q S EL V++ + I D
Sbjct: 199 ARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDE--------- 249
Query: 111 ELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMV 170
+ +V+ D R ++N+ + + SKNI++IM
Sbjct: 250 ---IDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF-------------ETSKNIKIIMA 293
Query: 171 CDSMSPIIAPIKSRC----LLIRCPAPSDSEISTILS 203
+ + I+ P R I P PS + + IL
Sbjct: 294 TNRLD-ILDPALLRPGRIDRKIEFPPPSVAARAEILR 329
>3EIH-A nrPDB
Length = 340
Score = 41.0 bits (94), Expect = 9e-04, Method: Composition-based stats.
Identities = 32/160 (20%), Positives = 56/160 (35%), Gaps = 13/160 (8%)
Query: 14 NALSHNEELTNFLKSLSDQPRDLPHL-----------LLYGPNGTGKKTRCMALLESIFG 62
++ E LK P PHL LLYGP GTGK A+
Sbjct: 36 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS 95
Query: 63 PGVYRLKIDVRQFVTASNRKL--ELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQME 120
D+ + KL +L ++ I D + E E ++
Sbjct: 96 TFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRI 155
Query: 121 QVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEK 160
+ + +G+ + + V++ A ++ +A+RR E+
Sbjct: 156 KTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFER 195
>2I3B-A nrPDB
Length = 189
Score = 40.6 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 25/133 (18%), Positives = 44/133 (33%), Gaps = 9/133 (6%)
Query: 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNR----KLELNVVSSPYH 93
H+ L GP G GK T E + GV + R + L+ P
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLS 62
Query: 94 LEITPSDMGNNDRIVIQEL--LKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQ 151
G + V Q + L Q+ +++ + +I+E + +Q
Sbjct: 63 RVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQ 122
Query: 152 ---AALRRTMEKY 161
A+R+T+
Sbjct: 123 LFIQAVRQTLSTP 135
>4CIU-A nrPDB
Length = 727
Score = 40.6 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 36/279 (12%), Positives = 84/279 (30%), Gaps = 51/279 (18%)
Query: 16 LSHNEELTNFLK--------SLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYR 67
+ E + + L+D R + L GP G GK C AL +F
Sbjct: 428 VIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAM 487
Query: 68 LKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDS 127
++ID+ +F+ + + E G ++
Sbjct: 488 VRIDMSEFMEKHSVSRLVGAPPGYVGYE-----EGGYLTEAVRRR--------------- 527
Query: 128 KDGLAHRYKCVIINEANSLTKDAQAALRRTME---KYSKNIRLIMVCDSMSPIIAPIKSR 184
Y ++++ D L + ++ R + +++ + + + S
Sbjct: 528 ------PYSVILLDAVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSD 581
Query: 185 CLLIRCPAPSDSEISTILSDVVTN----------ERIQLETKDILKRIAQASNGNLRVSL 234
+ R + + ++ VV++ + + + + IA + L+
Sbjct: 582 LIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLY 641
Query: 235 LMLE----SMALNNELALKSSSPIIKPDWIIVIHKLTRK 269
LE + +++E S P + K +
Sbjct: 642 KRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQ 680
Score = 31.7 bits (70), Expect = 0.43, Method: Composition-based stats.
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 6 DKYRPKSLNALSHNEELTNF-LKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60
++ L+ + +E ++ L + ++ P L+ G G GK L + I
Sbjct: 28 ERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLI--GEPGVGKTAIVEGLAQRI 81
>5XMK-A nrPDB
Length = 437
Score = 40.6 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 32/160 (20%), Positives = 56/160 (35%), Gaps = 13/160 (8%)
Query: 14 NALSHNEELTNFLKSLSDQPRDLPHL-----------LLYGPNGTGKKTRCMALLESIFG 62
++ E LK P PHL LLYGP GTGK A+
Sbjct: 133 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS 192
Query: 63 PGVYRLKIDVRQFVTASNRKL--ELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQME 120
D+ + KL +L ++ I D + E E ++
Sbjct: 193 TFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRI 252
Query: 121 QVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEK 160
+ + +G+ + + V++ A ++ +A+RR E+
Sbjct: 253 KTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFER 292
>5VHN-D nrPDB
Length = 262
Score = 39.8 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 29/197 (14%), Positives = 64/197 (32%), Gaps = 28/197 (14%)
Query: 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITP 98
+L+YGP G GK A+ + + + Q P +
Sbjct: 58 VLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGE----------GPRMVRDVF 107
Query: 99 SDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTM 158
N +I + ++ D Q D R ++N+ + ++
Sbjct: 108 RLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNV-------- 159
Query: 159 EKYSKNIRLIMVCDSMSPIIAPIKSRCLL---IRCPAPSDSEISTILSDVVTNERI--QL 213
N+++IM + + + L I P P + I S + + + ++
Sbjct: 160 -----NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEV 214
Query: 214 ETKDILKRIAQASNGNL 230
+ +D + R + S ++
Sbjct: 215 DLEDYVARPDKISGADI 231
>3J3U-A nrPDB
Length = 810
Score = 39.8 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 26/132 (19%), Positives = 47/132 (35%), Gaps = 26/132 (19%)
Query: 28 SLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87
L D R + + GP G GK AL ESIFG ++ID+ ++ +
Sbjct: 530 GLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEY---------MEK 580
Query: 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT 147
S+ + P +G ++ + E ++ Y V+++
Sbjct: 581 HSTSRLVGSPPGYVGYDEGGQLTEKVRR-----------------KPYSVVLLDAIEKAH 623
Query: 148 KDAQAALRRTME 159
D L + +E
Sbjct: 624 PDVFNILLQVLE 635
Score = 32.5 bits (72), Expect = 0.27, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 9 RPKSLNALSHNEELTNF-LKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYR 67
+ SL+ + + ++ LS + ++ P L+ G G GK L + I V
Sbjct: 175 KEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLI--GEPGVGKTAIAEGLAQQIINNEVPE 232
Query: 68 LKIDVR 73
+ D R
Sbjct: 233 ILRDKR 238
>4YPN-A nrPDB
Length = 293
Score = 39.4 bits (90), Expect = 0.002, Method: Composition-based stats.
Identities = 28/205 (13%), Positives = 57/205 (27%), Gaps = 50/205 (24%)
Query: 6 DKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGV 65
D Y K + L D P L+L GP G GK + ++ S+
Sbjct: 113 DHYGLKDVKERILEYLAVRQLTQGLDVRNKAPILVLVGPPGVGKTSLGRSIARSM----- 167
Query: 66 YRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQ 125
++ L V + + +K+V +
Sbjct: 168 -----------NRKFHRISLGGVRDEAEIRGHRRTYIGAMPGKLIHAMKQVGVINP---- 212
Query: 126 DSKDGLAHRYKCVIINEANSLTK----DAQAALRRTMEKYSKNI---------------R 166
++++E + ++ D +A+ ++ N
Sbjct: 213 -----------VILLDEIDKMSSDWRGDPASAMLEVLDPEQNNTFTDHYLDVPYDLSKVF 261
Query: 167 LIMVCDSMSPIIAPIKSRCLLIRCP 191
I +++ I P+ R +I P
Sbjct: 262 FITTANTLQTIPRPLLDRMEVIEIP 286
>6QEL-G nrPDB
Length = 245
Score = 39.4 bits (90), Expect = 0.002, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 9/107 (8%)
Query: 6 DKYRPKSLNALSHNEELTNFLKSLSDQ-PRDLPHLLLYGPNGTGKKTRCMALLESIFGPG 64
+ YR + + ++ ++ + G GTGK A+ + G
Sbjct: 72 ENYRV----ECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRG 127
Query: 65 VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQE 111
L I V ++A + S L +D+ N D +VI E
Sbjct: 128 KSVLIITVADIMSAMKDTFRNSGTSEEQLL----NDLSNVDLLVIDE 170
>4ZPX-A nrPDB
Length = 413
Score = 39.4 bits (90), Expect = 0.002, Method: Composition-based stats.
Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 3/97 (3%)
Query: 11 KSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKI 70
K ++ + E +K+ ++Q R H+LL G GTGK A+ E + + + +
Sbjct: 38 KLIDQVIGQEHAVEVIKTAANQKR---HVLLIGEPGTGKSMLGQAMAELLPTETLEDILV 94
Query: 71 DVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRI 107
R + +E + + +
Sbjct: 95 FPNPEDENMPRIKTVPACQGRRIVEKYREKAKSQESV 131
>5VQ9-D nrPDB
Length = 432
Score = 39.4 bits (90), Expect = 0.002, Method: Composition-based stats.
Identities = 29/233 (12%), Positives = 76/233 (32%), Gaps = 21/233 (9%)
Query: 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITP 98
+LL+GP GTGK + C AL + + R + + + + + S ++
Sbjct: 175 VLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQ 234
Query: 99 S-----DMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAA 153
D + V+ + ++ + ++ A R ++ + + + + +
Sbjct: 235 KIQDLIDDKDALVFVLIDQVESLTAARNACRAGTEPSDAIRVVNAVLTQIDQIKRHS--- 291
Query: 154 LRRTMEKYSKNIRLIMVCDSMSPIIAPIKSRCLLIRCPAPSDSEISTILSDVVTNERIQL 213
N+ ++ + I R + + P + + E ++
Sbjct: 292 ----------NVVILTTSNITEKIDVAFVDRADIKQYIGPPSAAAIFKIYLSCLEELMKC 341
Query: 214 ETKDILKRIAQASNGNLRVSLLMLESMALNNELALKSSSPIIKPDWIIVIHKL 266
+ +++ + + +E+ L L S + V+ KL
Sbjct: 342 QIIYPRQQLLTLRELEM---IGFIENNVSKLSLLLNDISRKSEGLSGRVLRKL 391
>5T0C-AD nrPDB
Length = 418
Score = 39.1 bits (89), Expect = 0.003, Method: Composition-based stats.
Identities = 29/197 (14%), Positives = 64/197 (32%), Gaps = 28/197 (14%)
Query: 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITP 98
+L+YGP G GK A+ + + + Q P +
Sbjct: 202 VLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGE----------GPRMVRDVF 251
Query: 99 SDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTM 158
N +I + ++ D Q D R ++N+ + ++
Sbjct: 252 RLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNV-------- 303
Query: 159 EKYSKNIRLIMVCDSMSPIIAPIKSRCLL---IRCPAPSDSEISTILSDVVTNERI--QL 213
N+++IM + + + L I P P + I S + + + ++
Sbjct: 304 -----NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEV 358
Query: 214 ETKDILKRIAQASNGNL 230
+ +D + R + S ++
Sbjct: 359 DLEDYVARPDKISGADI 375
>3PFI-A nrPDB
Length = 338
Score = 39.1 bits (89), Expect = 0.003, Method: Composition-based stats.
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 9 RPKSLNALSHNEELTNFLKSLSDQPRD----LPHLLLYGPNGTGKKTRCMALLESI 60
RP + + E + L + L H+L GP G GK T + +
Sbjct: 24 RPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM 79
>6EF2-J nrPDB
Length = 262
Score = 39.1 bits (89), Expect = 0.003, Method: Composition-based stats.
Identities = 39/211 (18%), Positives = 69/211 (32%), Gaps = 44/211 (20%)
Query: 11 KSLNALSHNEELTNFLKSLSDQPRDLPHL------------LLYGPNGTGKKTRCMALLE 58
+ + + + +K + + P P L +LYGP GTGK A+
Sbjct: 2 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH 61
Query: 59 SIFGPGVYRLKIDVRQ--FVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEV 116
+ ++ Q S EL V++ + I D +
Sbjct: 62 HTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDE------------IDS 109
Query: 117 AQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSP 176
+V+ D R ++N+ + + SKNI++IM + +
Sbjct: 110 IGSTRVEGSGGGDSEVQRTMLELLNQLDGF-------------ETSKNIKIIMATNRLD- 155
Query: 177 IIAPIKSRC----LLIRCPAPSDSEISTILS 203
I+ P R I P PS + + IL
Sbjct: 156 ILDPALLRPGRIDRKIEFPPPSVAARAEILR 186
>6EF1-K nrPDB
Length = 276
Score = 38.7 bits (88), Expect = 0.004, Method: Composition-based stats.
Identities = 31/188 (16%), Positives = 56/188 (29%), Gaps = 27/188 (14%)
Query: 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITP 98
+LLYGP GTGK A+ S V S + + P +
Sbjct: 57 VLLYGPPGTGKTMLVKAVANS---------TKAAFIRVNGSEFVHKY-LGEGPRMVRDVF 106
Query: 99 SDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTM 158
N +I + ++ D Q D R ++ + + +
Sbjct: 107 RLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ---------- 156
Query: 159 EKYSKNIRLIMVCDSMSPIIAPIKSRCLL---IRCPAPSDSEISTILSDVVTNERIQLET 215
S N+++IM + + + L I P+ D L ++ L
Sbjct: 157 ---STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRD-RRERRLIFGTIASKMSLAP 212
Query: 216 KDILKRIA 223
+ L +
Sbjct: 213 EADLDSLI 220
>6NYV-B nrPDB
Length = 314
Score = 38.7 bits (88), Expect = 0.004, Method: Composition-based stats.
Identities = 36/242 (14%), Positives = 80/242 (33%), Gaps = 33/242 (13%)
Query: 15 ALSHNEELTNFLKSLSDQPRDLPHL-----------LLYGPNGTGKKTRCMALLESIFGP 63
++ + L+ + P P L LL+GP G GK A+
Sbjct: 40 DIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT 99
Query: 64 GVYRLKIDVRQFVTASNRKLELNVVSSPYHLE-----ITPSDMGNNDRIVIQELLKEVAQ 118
+ + KL + + H++ I D ++R + +
Sbjct: 100 FLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLK 159
Query: 119 MEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEK-----YSKNIRLIMVCDS 173
E + D G + V++ N + +AALRR ++ + R +++
Sbjct: 160 TEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRL 219
Query: 174 MSPIIAPIKSRCLLIRCPAPSDSEISTILSDVVTN-----------ERIQLETKDILKRI 222
+ +P+ + L R +D + L+ + + E+++ ++ I
Sbjct: 220 LQKQGSPLDTEALR-RLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAI 278
Query: 223 AQ 224
+
Sbjct: 279 TE 280
>5D4W-A nrPDB
Length = 926
Score = 38.7 bits (88), Expect = 0.004, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 16 LSHNEELTNFL-------KSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRL 68
+ +E + +S P P L GP+GTGK AL E +F +
Sbjct: 600 VVGQKEAVQSVSNAIRLQRSGLSNPNQPPSFLFCGPSGTGKTLLTKALAEFLFDDPKSMI 659
Query: 69 KIDVRQF 75
+ D+ ++
Sbjct: 660 RFDMSEY 666
Score = 36.0 bits (81), Expect = 0.025, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 36/104 (34%), Gaps = 10/104 (9%)
Query: 9 RPKSLNALSHNEELTNF-LKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYR 67
R ++ + EE ++ LS + ++ P L+ G G GK T L + I V
Sbjct: 190 REGKIDPVIGREEEIRRVIRILSRRTKNNPVLI--GEPGVGKTTIVEGLAQRIVNADVPD 247
Query: 68 -------LKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNN 104
L +DV V S + E EI S
Sbjct: 248 NLAACKLLSLDVGALVAGSKYRGEFEERMKGVLKEIQESKETII 291
>3M6A-A nrPDB
Length = 543
Score = 38.3 bits (87), Expect = 0.005, Method: Composition-based stats.
Identities = 40/216 (18%), Positives = 84/216 (38%), Gaps = 37/216 (17%)
Query: 5 VDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPG 64
++K + + L L+ + LT LK P L L GP G GK + ++ +S+
Sbjct: 86 LEKVKERILEYLAVQK-LTKSLKG--------PILCLAGPPGVGKTSLAKSIAKSL---- 132
Query: 65 VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDF 124
R+FV ++ L V + I + +K+ ++ V
Sbjct: 133 -------GRKFV-----RISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNPVFL 180
Query: 125 QDSKDGLAHRYK-------CVIIN-EANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSP 176
D D ++ ++ +++ E NS D + T + + I ++++
Sbjct: 181 LDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSD--HYIEETFDL--SKVLFIATANNLAT 236
Query: 177 IIAPIKSRCLLIRCPAPSDSEISTILSDVVTNERIQ 212
I P++ R +I ++ E I+ D + ++I+
Sbjct: 237 IPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIK 272
>6CHS-H nrPDB
Length = 819
Score = 38.3 bits (87), Expect = 0.006, Method: Composition-based stats.
Identities = 50/281 (17%), Positives = 91/281 (32%), Gaps = 61/281 (21%)
Query: 14 NALSHNEELTNFLKSLSDQPRDLPH------------LLLYGPNGTGKKTRCMALLESI- 60
+ E++ LK P D P +L YGP GTGK A+
Sbjct: 494 EDIGGLEQVKQELKEQVQYPVDHPEKFLKFGLSPSRGVLFYGPPGTGKTMLAKAVANECA 553
Query: 61 ---------------FGPGVYRLKIDVRQFVTASNRKL---ELNVVSSPYHLEITPSDMG 102
FG ++ + A+ + EL+ ++ I D G
Sbjct: 554 ANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCVVFLDELDSIAKARGGSI--GDAG 611
Query: 103 NNDRIVIQELLKEV-------------AQMEQVDFQDSKDGLAHRYKCVII---NEANSL 146
V+ +LL E+ A + + + + +EA L
Sbjct: 612 GASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQLDPALCRPGRLDQLIYVPLPDEAGRL 671
Query: 147 TKDAQAALRRTMEKYSKNIRLIMVCDSMSPI----IAPIKSRCLLIRCPAPSDSEISTIL 202
+ +A LR+T SK++ L + +A I R + + +EI
Sbjct: 672 SI-LKAQLRKT--PVSKDVDLAYIASKTHGFSGADLAFITQRAVKLAIKESIAAEIERQK 728
Query: 203 SDVVTNERIQLET-----KDILKRIAQASNGNLRVSLLMLE 238
+ E + +E ++ KR + + + R S+ +E
Sbjct: 729 AREAAGEDVNMEDDEDPVPELTKRHFEEAMRDARRSVSDVE 769
Score = 35.6 bits (80), Expect = 0.037, Method: Composition-based stats.
Identities = 39/238 (16%), Positives = 74/238 (31%), Gaps = 57/238 (23%)
Query: 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITP 98
+LLYGP GTGK A+ +++ P +
Sbjct: 257 VLLYGPPGTGKTLMARAVANE---------------------TGAFFFLINGPEIMSKMA 295
Query: 99 SDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT----------- 147
+ +N R +E K + I+E +S+
Sbjct: 296 GESESNLRKAFEEAEKNSPA------------------IIFIDEIDSIAPKREKTNGEVE 337
Query: 148 KDAQAALRRTME-KYSKNIRLIMVCDSMSPIIAPIKSRCLLI----RCPAPSDSEISTIL 202
+ + L M+ +++ ++M + I P R P + IL
Sbjct: 338 RRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPALRRFGRFDREVDIGIPDPTGRLEIL 397
Query: 203 SDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALNNELALKSSSPIIKPDWI 260
+ + ++L L++IA ++G + L L S A ++ K + D I
Sbjct: 398 Q--IHTKNMKLADDVDLEQIAAETHGYVGSDLAALCSEAAMQQIREKMDLIDLDEDTI 453
>5ZQM-A nrPDB
Length = 309
Score = 37.9 bits (86), Expect = 0.006, Method: Composition-based stats.
Identities = 42/304 (13%), Positives = 88/304 (28%), Gaps = 52/304 (17%)
Query: 14 NALSHNEELTNFLKSLSDQPRDLPH-----------LLLYGPNGTGKKTRCMALLESIFG 62
+ ++ E LK P +P +L+ GP GTGK A+
Sbjct: 29 DDIADLVEAKKLLKEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECKT 88
Query: 63 PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV 122
+ + KL + + D I + E
Sbjct: 89 TFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSE------- 141
Query: 123 DFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIK 182
+ + R K ++ + + + ++ + SK + ++ + I ++
Sbjct: 142 -----EHEASRRVKAELLVQMDGVGGTSEN------DDPSKMVMVLAATNFPWDIDEALR 190
Query: 183 SRC-LLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNG------------- 228
R I P PS +L ++ ++L L IA+ G
Sbjct: 191 RRLEKRIYIPLPSAKGREELLR--ISLRELELADDVDLASIAENMEGYSGADITNVCRDA 248
Query: 229 ---NLRVSLLMLESMALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAV 285
+R + L + N + P D+ + +K+ K S +
Sbjct: 249 SLMAMRRRIEGLTPEEIRNLSKEEMHMPTTMEDFEMA----LKKVSKSVSAADIERYEKW 304
Query: 286 LYDL 289
+++
Sbjct: 305 IFEF 308
>5OFO-C nrPDB
Length = 871
Score = 37.9 bits (86), Expect = 0.006, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 8/70 (11%)
Query: 16 LSHNEELTNFLK--------SLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYR 67
+ E + + L+D R + L GP G GK C AL +F
Sbjct: 574 VIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAM 633
Query: 68 LKIDVRQFVT 77
++ID+ +F+
Sbjct: 634 VRIDMSEFME 643
Score = 31.7 bits (70), Expect = 0.44, Method: Composition-based stats.
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 6 DKYRPKSLNALSHNEELTNF-LKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60
++ L+ + +E ++ L + ++ P L+ G G GK L + I
Sbjct: 174 ERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLI--GEPGVGKTAIVEGLAQRI 227
>6BLB-A nrPDB
Length = 355
Score = 37.9 bits (86), Expect = 0.007, Method: Composition-based stats.
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 9 RPKSLNALSHNEELTNFLKSLSDQPRD----LPHLLLYGPNGTGKKTRCMALLESI 60
RP L + ++ R L H L++GP G GK T + + +
Sbjct: 28 RPLKLADYIGQPSVREQMELFIHAARGRQEALDHTLIFGPPGLGKTTLANIIAQEM 83
>5WVI-K nrPDB
Length = 428
Score = 37.9 bits (86), Expect = 0.007, Method: Composition-based stats.
Identities = 31/188 (16%), Positives = 56/188 (29%), Gaps = 27/188 (14%)
Query: 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITP 98
+LLYGP GTGK A+ S V S + + P +
Sbjct: 209 VLLYGPPGTGKTMLVKAVANS---------TKAAFIRVNGSEFVHKY-LGEGPRMVRDVF 258
Query: 99 SDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTM 158
N +I + ++ D Q D R ++ + + +
Sbjct: 259 RLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ---------- 308
Query: 159 EKYSKNIRLIMVCDSMSPIIAPIKSRCLL---IRCPAPSDSEISTILSDVVTNERIQLET 215
S N+++IM + + + L I P+ D L ++ L
Sbjct: 309 ---STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRD-RRERRLIFGTIASKMSLAP 364
Query: 216 KDILKRIA 223
+ L +
Sbjct: 365 EADLDSLI 372
>3WHK-A nrPDB
Length = 270
Score = 37.5 bits (85), Expect = 0.008, Method: Composition-based stats.
Identities = 30/162 (18%), Positives = 60/162 (37%), Gaps = 27/162 (16%)
Query: 9 RPK-SLNALSHNEELTNFLKSLSDQPRDLPHL------------LLYGPNGTGKKTRCMA 55
RP + N + ++ L+ + P P L LLYGP G GK A
Sbjct: 11 RPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKA 70
Query: 56 LLESIFGPGVYRLKIDVRQFVTASNRKL-----ELNVVSSPYHLEITP---------SDM 101
+ + + + ++ + +L EL +P + I +
Sbjct: 71 IAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRLDET 130
Query: 102 GNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEA 143
+R V + L++ +A+M+ D + + +A + I++ A
Sbjct: 131 TGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPA 172
>5UBV-A nrPDB
Length = 246
Score = 37.5 bits (85), Expect = 0.009, Method: Composition-based stats.
Identities = 39/254 (15%), Positives = 80/254 (31%), Gaps = 63/254 (24%)
Query: 20 EELTNFLK---SLSDQPRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQF 75
+EL FL+ S+ LP +LL GP GTGK A+
Sbjct: 19 QELVEFLRNPEKFSNLGGKLPKGVLLVGPPGTGKTLLARAVAGE---------------- 62
Query: 76 VTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRY 135
+ ++ S+ V + ++E+ +
Sbjct: 63 -------------AGVPFFYMSGSEFDEIYVGVGAKRVRELFNAAKAKAPS--------- 100
Query: 136 KCVIINEANSL-----TKDAQ------AALRRTMEKYSKNIRLIM--VCDSMSPIIAPIK 182
V I+E +++ ++DA L M+ +++N +I+ + + +
Sbjct: 101 -IVFIDELDAIGGRRNSRDATYVRQTLNQLLTEMDGFAQNSGVIILGATNFPESLDKAL- 158
Query: 183 SRCLLI----RCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLE 238
+R P IL I++ + + IA ++G L +
Sbjct: 159 TRPGRFDRHVHVSLPDVRGRIAILKHHAKK--IKIGSDVNIAAIAARTSGLSGAELENIV 216
Query: 239 SMALNNELALKSSS 252
+ A + K+ +
Sbjct: 217 NQAAVHASKEKAKA 230
>3PXI-A nrPDB
Length = 758
Score = 37.1 bits (84), Expect = 0.011, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 28 SLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVT 77
L D R + + GP G GK AL ESIFG ++ID+ +++
Sbjct: 513 GLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME 562
Score = 32.1 bits (71), Expect = 0.34, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 9 RPKSLNALSHNEELTNF-LKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYR 67
+ SL+ + + ++ LS + ++ P L+ G G GK L + I V
Sbjct: 175 KEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLI--GEPGVGKTAIAEGLAQQIINNEVPE 232
Query: 68 LKIDVR 73
+ D R
Sbjct: 233 ILRDKR 238
>2QBY-A nrPDB
Length = 386
Score = 37.1 bits (84), Expect = 0.012, Method: Composition-based stats.
Identities = 40/288 (13%), Positives = 100/288 (34%), Gaps = 47/288 (16%)
Query: 14 NALSHNEELTNFLKSLS------DQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYR 67
+ L H E+ + S+ ++P ++ +YG GTGK +L + + +
Sbjct: 20 DELPHREDQIRKIASILAPLYREEKPNNI---FIYGLTGTGKTAVVKFVLSKLHKKFLGK 76
Query: 68 LKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDS 127
K + +N + + + D ++ ++ E
Sbjct: 77 FK------------HVYINTRQIDTPYRVLADLLESLD---VKVPFTGLSIAELYRRLVK 121
Query: 128 KDGLAHRYKCVIINEANSLTKDAQAAL-----RRTMEKYSKNIRLIMVCDSM------SP 176
++++E ++ K + R E I I + + + P
Sbjct: 122 AVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDP 181
Query: 177 IIAPIKSRCLLIRCPAPSDSEISTILSDVVTNE-RIQLETKDILKRIAQASN---GNLRV 232
+ S +I P + E+ IL+ + + +++K A + G+ R
Sbjct: 182 RVKSSLSEEEII-FPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARR 240
Query: 233 SLLMLESMALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLI 280
+L +L ++ E+A + +K +++ + ++ ++ V +I
Sbjct: 241 ALDLLR---VSGEIAERMKDTKVKEEYVY----MAKEEIERDRVRDII 281
>3D8B-A nrPDB
Length = 357
Score = 37.1 bits (84), Expect = 0.012, Method: Composition-based stats.
Identities = 37/288 (12%), Positives = 86/288 (29%), Gaps = 42/288 (14%)
Query: 10 PKSLNALSHNEELTNFLKSLSDQPRDLPHL-----------LLYGPNGTGKKTRCMALLE 58
P + ++ E +K + P P + LL+GP GTGK +
Sbjct: 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139
Query: 59 SIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQ 118
+ K+ + + + + D ++ Q
Sbjct: 140 QSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQR------- 192
Query: 119 MEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPII 178
D + + R K + + + T ++ + ++ + I
Sbjct: 193 ------GDGEHESSRRIKTEFLVQLDGATTSSEDRIL-----------VVGATNRPQEID 235
Query: 179 APIKSR-CLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLML 237
+ R + P P S I+ ++++ E+ L ++I + + Q+ + +
Sbjct: 236 EAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLC 295
Query: 238 ESMALNNELALK------SSSPIIKPDWIIVIHKLTRKIVKERSVNSL 279
+L +L+ + ++P I R + S L
Sbjct: 296 REASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDL 343
>5U1D-A nrPDB
Length = 748
Score = 36.7 bits (83), Expect = 0.015, Method: Composition-based stats.
Identities = 47/236 (19%), Positives = 87/236 (36%), Gaps = 19/236 (8%)
Query: 29 LSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVV 88
+ +P ++ L+ GPNG+GK T ALL++++ P +L +D + +R L V
Sbjct: 526 FTLRPGEVTALV--GPNGSGKSTVA-ALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVA 582
Query: 89 SSPYHLEI-TPSDMGNNDRIVIQELLKE--VAQMEQVDFQDSKDGLAHRYKCVIINEANS 145
+ ++ S N + Q+ E A + GL Y + +EA S
Sbjct: 583 AVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEV-DEAGS 641
Query: 146 LTKDAQA---ALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSRCLLIRCPAPSDSEISTIL 202
Q AL R + + K LI+ D+ S + A + + + +P S +
Sbjct: 642 QLSGGQRQAVALARALIR--KPCVLILD-DATSALDANSQLQVEQLLYESP--ERYSRSV 696
Query: 203 SDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALNNELALKSSSPIIKPD 258
+ + + + I G +R + M +P P+
Sbjct: 697 LLITQHLSLVEQADH----ILFLEGGAIREGGTHQQLMEKKGCYWAMVQAPADAPE 748
>1JJ7-A nrPDB
Length = 260
Score = 36.7 bits (83), Expect = 0.015, Method: Composition-based stats.
Identities = 47/236 (19%), Positives = 87/236 (36%), Gaps = 19/236 (8%)
Query: 29 LSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVV 88
+ +P ++ L+ GPNG+GK T ALL++++ P +L +D + +R L V
Sbjct: 38 FTLRPGEVTALV--GPNGSGKSTVA-ALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVA 94
Query: 89 SSPYHLEI-TPSDMGNNDRIVIQELLKE--VAQMEQVDFQDSKDGLAHRYKCVIINEANS 145
+ ++ S N + Q+ E A + GL Y + +EA S
Sbjct: 95 AVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEV-DEAGS 153
Query: 146 LTKDAQA---ALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSRCLLIRCPAPSDSEISTIL 202
Q AL R + + K LI+ D+ S + A + + + +P S +
Sbjct: 154 QLSGGQRQAVALARALIR--KPCVLILD-DATSALDANSQLQVEQLLYESP--ERYSRSV 208
Query: 203 SDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALNNELALKSSSPIIKPD 258
+ + + + I G +R + M +P P+
Sbjct: 209 LLITQHLSLVEQADH----ILFLEGGAIREGGTHQQLMEKKGCYWAMVQAPADAPE 260
>1XWI-A nrPDB
Length = 322
Score = 36.7 bits (83), Expect = 0.015, Method: Composition-based stats.
Identities = 35/167 (20%), Positives = 58/167 (34%), Gaps = 15/167 (8%)
Query: 9 RPKS-LNALSHNEELTNFLKSLSDQPRDLPHL-----------LLYGPNGTGKKTRCMAL 56
RP + ++ E LK P PHL LL+GP GTGK A+
Sbjct: 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAV 65
Query: 57 LESIFGPGVYR-LKIDVRQFVTASNRKL--ELNVVSSPYHLEITPSDMGNNDRIVIQELL 113
+ D+ + KL L ++ I D ++ E
Sbjct: 66 ATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE 125
Query: 114 KEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEK 160
E A+ + +F G+ +++ A ++ +A+RR EK
Sbjct: 126 SEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEK 172
>3H4M-A nrPDB
Length = 285
Score = 36.7 bits (83), Expect = 0.017, Method: Composition-based stats.
Identities = 34/209 (16%), Positives = 70/209 (33%), Gaps = 60/209 (28%)
Query: 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITP 98
+LLYGP GTGK A+ E
Sbjct: 54 ILLYGPPGTGKTLLAKAVA------------------------------------TETNA 77
Query: 99 SDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAAL---- 154
+ + ++++ + E A + + F+ +K+ + I+E +++ AL
Sbjct: 78 TFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPS---IIFIDEIDAIAAKRTDALTGGD 134
Query: 155 ----RRTMEKYSK--------NIRLIMVCDSMSPIIAPIKSRC---LLIRCPAPSDSEIS 199
R M+ ++ ++++I + + I +I PAP +
Sbjct: 135 REVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRL 194
Query: 200 TILSDVVTNERIQLETKDILKRIAQASNG 228
IL + ++ L L+ IA+ + G
Sbjct: 195 EILK--IHTRKMNLAEDVNLEEIAKMTEG 221
>6MSK-B nrPDB
Length = 440
Score = 36.4 bits (82), Expect = 0.019, Method: Composition-based stats.
Identities = 31/230 (13%), Positives = 70/230 (30%), Gaps = 70/230 (30%)
Query: 5 VDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPH------------LLLYGPNGTGKKTR 52
V+K ++ + + +K + P P ++LYGP GTGK
Sbjct: 176 VEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLL 235
Query: 53 CMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQEL 112
A+ +S L + S++ +L
Sbjct: 236 AKAVANQ-----------------------------TSATFLRVVGSELIQKYLGDGPKL 266
Query: 113 LKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL-------TKDAQAALRRTMEKY---- 161
++E+ ++ + V I+E +++ + ++RTM +
Sbjct: 267 VRELFRVAEEHAPS----------IVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQL 316
Query: 162 -----SKNIRLIMVCDSMSPIIAPIKSRCLL---IRCPAPSDSEISTILS 203
++++IM + + + + + I P P + I
Sbjct: 317 DGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQ 366
>2ZAO-A nrPDB
Length = 444
Score = 36.4 bits (82), Expect = 0.019, Method: Composition-based stats.
Identities = 35/167 (20%), Positives = 58/167 (34%), Gaps = 15/167 (8%)
Query: 9 RPKS-LNALSHNEELTNFLKSLSDQPRDLPHL-----------LLYGPNGTGKKTRCMAL 56
RP + ++ E LK P PHL LL+GP GTGK A+
Sbjct: 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAV 187
Query: 57 LESIFGPGVYR-LKIDVRQFVTASNRKL--ELNVVSSPYHLEITPSDMGNNDRIVIQELL 113
+ D+ + KL L ++ I D ++ E
Sbjct: 188 ATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE 247
Query: 114 KEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEK 160
E A+ + +F G+ +++ A ++ +A+RR EK
Sbjct: 248 SEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEK 294
>5VHO-B nrPDB
Length = 267
Score = 36.4 bits (82), Expect = 0.020, Method: Composition-based stats.
Identities = 31/216 (14%), Positives = 65/216 (30%), Gaps = 42/216 (19%)
Query: 5 VDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPH------------LLLYGPNGTGKKTR 52
V+K ++ + + +K + P P ++LYGP GTGK
Sbjct: 10 VEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLL 69
Query: 53 CMALLESIFGPGVYRLKIDVRQFVTASNRKL--ELNVVSSPYHLEITPSDMGNNDRIVIQ 110
A+ + + ++ Q KL EL V+ + I D
Sbjct: 70 AKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDE--------- 120
Query: 111 ELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMV 170
+ ++ D + R ++N+ + ++++IM
Sbjct: 121 ---IDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS-------------RGDVKVIMA 164
Query: 171 CDSMSPIIAPIKSRCLL---IRCPAPSDSEISTILS 203
+ + + + + I P P + I
Sbjct: 165 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQ 200
>5VHF-B nrPDB
Length = 340
Score = 36.4 bits (82), Expect = 0.021, Method: Composition-based stats.
Identities = 31/216 (14%), Positives = 65/216 (30%), Gaps = 42/216 (19%)
Query: 5 VDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPH------------LLLYGPNGTGKKTR 52
V+K ++ + + +K + P P ++LYGP GTGK
Sbjct: 84 VEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLL 143
Query: 53 CMALLESIFGPGVYRLKIDVRQFVTASNRKL--ELNVVSSPYHLEITPSDMGNNDRIVIQ 110
A+ + + ++ Q KL EL V+ + I D
Sbjct: 144 AKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDE--------- 194
Query: 111 ELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMV 170
+ ++ D + R ++N+ + ++++IM
Sbjct: 195 ---IDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS-------------RGDVKVIMA 238
Query: 171 CDSMSPIIAPIKSRCLL---IRCPAPSDSEISTILS 203
+ + + + + I P P + I
Sbjct: 239 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQ 274
>5VFP-B nrPDB
Length = 389
Score = 36.0 bits (81), Expect = 0.024, Method: Composition-based stats.
Identities = 31/216 (14%), Positives = 65/216 (30%), Gaps = 42/216 (19%)
Query: 5 VDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPH------------LLLYGPNGTGKKTR 52
V+K ++ + + +K + P P ++LYGP GTGK
Sbjct: 125 VEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLL 184
Query: 53 CMALLESIFGPGVYRLKIDVRQFVTASNRKL--ELNVVSSPYHLEITPSDMGNNDRIVIQ 110
A+ + + ++ Q KL EL V+ + I D
Sbjct: 185 AKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDE--------- 235
Query: 111 ELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMV 170
+ ++ D + R ++N+ + ++++IM
Sbjct: 236 ---IDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS-------------RGDVKVIMA 279
Query: 171 CDSMSPIIAPIKSRCLL---IRCPAPSDSEISTILS 203
+ + + + + I P P + I
Sbjct: 280 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQ 315
>4XGC-A nrPDB
Length = 393
Score = 36.0 bits (81), Expect = 0.029, Method: Composition-based stats.
Identities = 32/270 (11%), Positives = 91/270 (33%), Gaps = 29/270 (10%)
Query: 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITP 98
+ + G GTGK ++ ++ + +Q + LE+N + +
Sbjct: 63 MYVSGVPGTGKTATVTGVIRTL--------QRMAKQNELPAFEYLEINGMRLTEPRQAYV 114
Query: 99 SDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTM 158
+ ++ + ++++E + L Q + +
Sbjct: 115 QIYKQLTGKTVSWEQAHALLEKRFTTPAPRRVTT----VLLVDELDILCNRRQDVVYNLL 170
Query: 159 EKYSKNIRLIMVCDSMSPIIAP-------IKSR--CLLIRCPAPSDSEISTILS-DVVTN 208
+ +K+ ++V + + P + SR + S ++ I++ + +
Sbjct: 171 DWPTKSAAKLVVVTIANTMDLPERLLMGKVTSRLGLTRLTFQPYSHKQLQEIVTARLGGS 230
Query: 209 ERIQLETKDILKRIAQASNGNLRVSLLMLESMALNNELALKSSSPIIKPDWIIVIHKLTR 268
E + E ++ R A +G+ R +L + + A +K ++ + +
Sbjct: 231 ETFKGEAVQLVARKVAAVSGDARRALDICRRATEIADTA------AVKCVTMLHVQQALA 284
Query: 269 KIVKERSVNSLIECRAVLYDLLAHCIPANI 298
+++ V ++ C + + I A +
Sbjct: 285 EMIASAKVQAIRNCSR-MEQIFLQAIAAEV 313
>5Z6Q-A nrPDB
Length = 392
Score = 35.6 bits (80), Expect = 0.030, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 56/163 (34%), Gaps = 15/163 (9%)
Query: 13 LNALSHNEELTNFLKSLSDQPRDLPHL-----------LLYGPNGTGKKTRCMALLESIF 61
+ ++ + L+ + P P L LL+GP G GK A+
Sbjct: 117 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN 176
Query: 62 GPGVYRLKIDVRQFVTASNRKL--ELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQM 119
+ KL L V+ I D ++ +E + ++
Sbjct: 177 ATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEHDASRR 236
Query: 120 EQVDFQDSKDGL--AHRYKCVIINEANSLTKDAQAALRRTMEK 160
+ +F DG+ A + +++ N + +A LRR +++
Sbjct: 237 LKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKR 279
>6HE4-H nrPDB
Length = 267
Score = 35.6 bits (80), Expect = 0.030, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 14/119 (11%)
Query: 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKL-----ELNVVSSPYH 93
+LLYGP GTGK A+ + + + Q +L +L +P
Sbjct: 56 VLLYGPPGTGKTLLAKAVANQTRATFIRVVGSEFVQKYIGEGARLVREVFQLAKEKAPSI 115
Query: 94 LEITPSD---------MGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEA 143
+ I D + DR V + +++ +A+++ D + + + I++ A
Sbjct: 116 IFIDELDAIAARRTNSDTSGDREVQRTMMQLLAELDGFDPRGDVKVIGATNRIDILDPA 174
>6GEJ-U nrPDB
Length = 471
Score = 35.6 bits (80), Expect = 0.037, Method: Composition-based stats.
Identities = 29/187 (15%), Positives = 70/187 (37%), Gaps = 19/187 (10%)
Query: 77 TASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYK 136
T S ++++ + L + D G V ++ +VA+ ++ + G
Sbjct: 238 TVSLHEIDVINSRTQGFLALFTGDTGEIRSEVRDQINTKVAEWKEEGKAEIVPG------ 291
Query: 137 CVIINEANSLTKDAQAALRRTME---------KYSKNIRLIMVCDS--MSPIIAPIKSRC 185
+ I+E + L + + + R +E ++ + + + + R
Sbjct: 292 VLFIDEVHMLDIECFSFINRALEDEFAPIVMMATNRGVSKTRGTNYKSPHGLPLDLLDRS 351
Query: 186 LLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQAS-NGNLRVSLLMLESMALNN 244
++I + ++ EI TILS E ++L + D L + + +LR S ++
Sbjct: 352 IIITTKSYNEQEIKTILSIRAQEEEVELSS-DALDLLTKTGVETSLRYSSNLISVAQQIA 410
Query: 245 ELALKSS 251
++
Sbjct: 411 MKRKNNT 417
>2R44-A nrPDB
Length = 331
Score = 35.2 bits (79), Expect = 0.039, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 40/131 (30%), Gaps = 13/131 (9%)
Query: 16 LSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI--------FGPGVYR 67
+ + + N L H+LL G G K L +++ F P +
Sbjct: 29 VVGQKYMINRLLIGICTGG---HILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLP 85
Query: 68 LKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDS 127
+ K V P +D N +Q L E Q +QV D+
Sbjct: 86 SDLIGTMIYN--QHKGNFEVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDT 143
Query: 128 KDGLAHRYKCV 138
L + + +
Sbjct: 144 TYPLDNPFLVL 154
>6HE9-H nrPDB
Length = 390
Score = 35.2 bits (79), Expect = 0.039, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 14/119 (11%)
Query: 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKL-----ELNVVSSPYH 93
+LLYGP GTGK A+ + + + Q +L +L +P
Sbjct: 170 VLLYGPPGTGKTLLAKAVANQTRATFIRVVGSEFVQKYIGEGARLVREVFQLAKEKAPSI 229
Query: 94 LEITPSD---------MGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEA 143
+ I D + DR V + +++ +A+++ D + + + I++ A
Sbjct: 230 IFIDELDAIAARRTNSDTSGDREVQRTMMQLLAELDGFDPRGDVKVIGATNRIDILDPA 288
>4LJ8-A nrPDB
Length = 339
Score = 35.2 bits (79), Expect = 0.039, Method: Composition-based stats.
Identities = 25/182 (13%), Positives = 51/182 (28%), Gaps = 45/182 (24%)
Query: 16 LSHNEELTNFLK--------SLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYR 67
+ +E + L D R + L GP G GK L ++F
Sbjct: 45 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 104
Query: 68 LKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDS 127
++ID+ +++ + E Q +
Sbjct: 105 IQIDMTEYMEKHAVSRLIGAPPGYVGYEE--------------------------GGQLT 138
Query: 128 KDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYS-----------KNIRLIMVCDSMSP 176
+ Y ++ +E D L + ++ +N +I+ + SP
Sbjct: 139 EAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSP 198
Query: 177 II 178
+I
Sbjct: 199 LI 200
>6AZ0-A nrPDB
Length = 439
Score = 35.2 bits (79), Expect = 0.047, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 20 EELTNFLK---SLSDQPRDLPH-LLLYGPNGTGKKTRCMALLES 59
EE+ +FLK LP +LL GP GTGK A
Sbjct: 16 EEIVDFLKDPTKYESLGGKLPKGVLLTGPPGTGKTLLARATAGE 59
>2CE7-A nrPDB
Length = 476
Score = 35.2 bits (79), Expect = 0.049, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 16/68 (23%)
Query: 8 YRPK-----SLNALSHNEELTNFLKSLSDQPRD----------LPH-LLLYGPNGTGKKT 51
Y+P + + EE LK + + +D +P +LL GP GTGK
Sbjct: 5 YKPSGNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTL 64
Query: 52 RCMALLES 59
A+
Sbjct: 65 LARAVAGE 72
>5V8F-9 nrPDB
Length = 513
Score = 34.8 bits (78), Expect = 0.058, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 57/171 (33%), Gaps = 17/171 (9%)
Query: 20 EELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV-TA 78
E++ NFL + R L + GP GTGK + ++ F L + V
Sbjct: 86 EQVMNFLAKAISEHRS-DSLYITGPPGTGKTAQLDMIIRQKFQSLPLSLSTPRSKDVLRH 144
Query: 79 SNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCV 138
+N L+ + + + + I + E + D +G + K
Sbjct: 145 TNPNLQNLSWFELPDGRLESVAVTSINCISLGEPSSIF--QKIFDSFQDLNGPTLQIK-- 200
Query: 139 IINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSRCLLIR 189
L++ +E Y K ++V D M ++ S +R
Sbjct: 201 -----------NMQHLQKFLEPYHKKTTFVVVLDEMDRLLHANTSETQSVR 240
>1QVR-A nrPDB
Length = 854
Score = 34.4 bits (77), Expect = 0.075, Method: Composition-based stats.
Identities = 25/182 (13%), Positives = 51/182 (28%), Gaps = 45/182 (24%)
Query: 16 LSHNEELTNFLK--------SLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYR 67
+ +E + L D R + L GP G GK L ++F
Sbjct: 560 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 619
Query: 68 LKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDS 127
++ID+ +++ + E Q +
Sbjct: 620 IRIDMTEYMEKHAVSRLIGAPPGYVGYEE--------------------------GGQLT 653
Query: 128 KDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYS-----------KNIRLIMVCDSMSP 176
+ Y ++ +E D L + ++ +N +I+ + SP
Sbjct: 654 EAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSP 713
Query: 177 II 178
+I
Sbjct: 714 LI 715
Score = 32.5 bits (72), Expect = 0.28, Method: Composition-based stats.
Identities = 39/268 (14%), Positives = 84/268 (31%), Gaps = 52/268 (19%)
Query: 13 LNALSHNEELTNFLKSLSDQ-PRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKID 71
L+ + +E + + + ++ P L+ G G GK L + I V
Sbjct: 169 LDPVIGRDEEIRRVIQILLRRTKNNPVLI--GEPGVGKTAIVEGLAQRIVKGDVPEGLKG 226
Query: 72 VRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGL 131
R +VS + + ++ +++EV Q +
Sbjct: 227 KR-------------IVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQ----------- 262
Query: 132 AHRYKCVIINEANS--------LTKDAQAALRRTMEKYSKNIRLIMVCD-SMSPIIA--- 179
+ I+E ++ DA L+ + + +RLI I
Sbjct: 263 --GEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATTLDEYREIEKDP 318
Query: 180 PIKSRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLR-------- 231
++ R + P+ E +IL + + + I A+ + R
Sbjct: 319 ALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLP 378
Query: 232 -VSLLMLESMALNNELALKSSSPIIKPD 258
++ +++ A +AL+S+ I
Sbjct: 379 DKAIDLIDEAAARLRMALESAPEEIDAL 406
>6EMW-E nrPDB
Length = 181
Score = 34.4 bits (77), Expect = 0.076, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 12 SLNALSHNE-ELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKI 70
+L+ + + E+T ++ LS + ++ P L+ G G GK L ++I V
Sbjct: 17 TLDPVIGRDKEITRVIEVLSRRTKNNPVLI--GEPGVGKTAIAEGLAQAIVNNEVPETLK 74
Query: 71 DVR 73
D R
Sbjct: 75 DKR 77
>6QI8-A nrPDB
Length = 456
Score = 34.4 bits (77), Expect = 0.078, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 39 LLLYGPNGTGKKTRCMALLESI 60
+LL GP GTGK +A+ + +
Sbjct: 66 VLLAGPPGTGKTALALAIAQEL 87
Score = 32.1 bits (71), Expect = 0.39, Method: Composition-based stats.
Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 14/128 (10%)
Query: 137 CVIINEANSLTKDAQAALRRTMEK-------YSKNIRLIMV-----CDSMSPIIAPIKSR 184
+ ++E + L + L R +E ++ N ++ S I + R
Sbjct: 298 VLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDR 357
Query: 185 CLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQA-SNGNLRVSLLMLESMALN 243
++IR + E+ I+ E I + +++ L + + + LR S+ +L L
Sbjct: 358 VMIIRTMLYTPQEMKQIIKIRAQTEGINI-SEEALNHLGEIGTKTTLRYSVQLLTPANLL 416
Query: 244 NELALKSS 251
++ K S
Sbjct: 417 AKINGKDS 424
>5VC7-A nrPDB
Length = 564
Score = 34.4 bits (77), Expect = 0.078, Method: Composition-based stats.
Identities = 49/289 (16%), Positives = 82/289 (28%), Gaps = 70/289 (24%)
Query: 14 NALSHNEELTNFLKSLSDQPRDLPHL------------LLYGPNGTGKKTRCMALLESIF 61
+ + E++ +K + P P + LLYGP G GK A+
Sbjct: 286 DDIGGLEDVKREIKETVELPLLKPDVFKRLGIRPSKGFLLYGPPGVGKTLLAKAVATE-- 343
Query: 62 GPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ 121
+ P L S I+E+ K+ Q+
Sbjct: 344 -------------------SNANFISIKGPEVL----SKWVGESEKAIREIFKKAKQVAP 380
Query: 122 VDFQDSKDGLAHRYKCVIINEANSL------TKDAQAALRRTMEKYSK-------NIRLI 168
V ++E +S+ T D+ R + + N ++
Sbjct: 381 A--------------IVFLDEIDSIAPRRGTTSDSGVTERIVNQLLTSLDGIEVMNGVVV 426
Query: 169 MVCDSMSPIIAPIKSRCLLI----RCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQ 224
+ + I+ P R P P +IL V + + L L IAQ
Sbjct: 427 IGATNRPDIMDPALLRAGRFDKLIYIPPPDKEARLSILK--VHTKNMPLAPDVDLNDIAQ 484
Query: 225 ASNGNLRVSLLMLESMALNNELALKSSSPIIKPDWIIVIHKLTRKIVKE 273
+ G + L L A N + + + K R V E
Sbjct: 485 RTEGYVGADLENLCREAGMNAYRENPDATSVSQKNFLDALKTIRPSVDE 533
Score = 34.1 bits (76), Expect = 0.11, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 5/121 (4%)
Query: 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLK---IDVRQFVTASNRKLELNVVSSPYHLE 95
++LYGP GTGK A+ G + I + + + + E+ +
Sbjct: 46 VILYGPPGTGKTLIARAVANE-SGANFLSINGPEIMSKYYGQSEQKLREIFSKAEETAPS 104
Query: 96 ITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALR 155
I D ++ +E+ EV + DG+ R ++I N + ALR
Sbjct: 105 IIFIDEIDSIAPKREEVQGEVERRVVAQLLTLMDGMKERGHVIVIGATNRIDA-IDPALR 163
Query: 156 R 156
R
Sbjct: 164 R 164
>2R65-A nrPDB
Length = 268
Score = 34.1 bits (76), Expect = 0.093, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 21 ELTNFLK---SLSDQPRDLPH-LLLYGPNGTGKKTRCMALLESIFGP 63
E+ +FLK ++ +P +LL GP GTGK A+ P
Sbjct: 25 EIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVP 71
>5G4G-A nrPDB
Length = 721
Score = 34.1 bits (76), Expect = 0.10, Method: Composition-based stats.
Identities = 49/289 (16%), Positives = 82/289 (28%), Gaps = 70/289 (24%)
Query: 14 NALSHNEELTNFLKSLSDQPRDLPHL------------LLYGPNGTGKKTRCMALLESIF 61
+ + E++ +K + P P + LLYGP G GK A+
Sbjct: 462 DDIGGLEDVKREIKETVELPLLKPDVFKRLGIRPSKGFLLYGPPGVGKTLLAKAVATE-- 519
Query: 62 GPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ 121
+ P L S I+E+ K+ Q+
Sbjct: 520 -------------------SNANFISIKGPEVL----SKWVGESEKAIREIFKKAKQVAP 556
Query: 122 VDFQDSKDGLAHRYKCVIINEANSL------TKDAQAALRRTMEKYSK-------NIRLI 168
V ++E +S+ T D+ R + + N ++
Sbjct: 557 A--------------IVFLDEIDSIAPRRGTTSDSGVTERIVNQLLTSLDGIEVMNGVVV 602
Query: 169 MVCDSMSPIIAPIKSRCLLI----RCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQ 224
+ + I+ P R P P +IL V + + L L IAQ
Sbjct: 603 IGATNRPDIMDPALLRAGRFDKLIYIPPPDKEARLSILK--VHTKNMPLAPDVDLNDIAQ 660
Query: 225 ASNGNLRVSLLMLESMALNNELALKSSSPIIKPDWIIVIHKLTRKIVKE 273
+ G + L L A N + + + K R V E
Sbjct: 661 RTEGYVGADLENLCREAGMNAYRENPDATSVSQKNFLDALKTIRPSVDE 709
Score = 33.7 bits (75), Expect = 0.12, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 5/121 (4%)
Query: 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLK---IDVRQFVTASNRKLELNVVSSPYHLE 95
++LYGP GTGK A+ G + I + + + + E+ +
Sbjct: 222 VILYGPPGTGKTLIARAVANE-SGANFLSINGPEIMSKYYGQSEQKLREIFSKAEETAPS 280
Query: 96 ITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALR 155
I D ++ +E+ EV + DG+ R ++I N + ALR
Sbjct: 281 IIFIDEIDSIAPKREEVQGEVERRVVAQLLTLMDGMKERGHVIVIGATNRIDA-IDPALR 339
Query: 156 R 156
R
Sbjct: 340 R 340
>6EF0-H nrPDB
Length = 257
Score = 33.7 bits (75), Expect = 0.12, Method: Composition-based stats.
Identities = 28/223 (12%), Positives = 66/223 (29%), Gaps = 70/223 (31%)
Query: 12 SLNALSHNEELTNFLKSLSDQPRDLPH------------LLLYGPNGTGKKTRCMALLES 59
+ + + ++ L+ + + P P +LLYGP GTGK A+
Sbjct: 7 TYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN- 65
Query: 60 IFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQM 119
+ + ++Q+ + E A+M
Sbjct: 66 -----------------------------------RTDATFIRVIGSELVQKYVGEGARM 90
Query: 120 EQVDFQDSKDGLAHRYKCVIINEANSL-------TKDAQAALRRTMEK---------YSK 163
+ F+ ++ A + +E +++ ++RTM +
Sbjct: 91 VRELFEMARTKKAC---IIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 147
Query: 164 NIRLIMVCDSMSPIIAPIKSRCLLIR---CPAPSDSEISTILS 203
NI+++ + + + + + R P + I
Sbjct: 148 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFR 190
>6E11-1 nrPDB
Length = 906
Score = 33.7 bits (75), Expect = 0.12, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 46/151 (30%), Gaps = 34/151 (22%)
Query: 16 LSHNEELTNFLKSLSDQP--------RDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYR 67
+ NE++ L + + + L GP G GK L +F
Sbjct: 603 IIGNEDIIKSLSDAVVKAATGMKDPEKPIGTFLFLGPTGVGKTELAKTLAIELFNSKDNL 662
Query: 68 LKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDS 127
+++++ +F A S P +G +D + E ++E
Sbjct: 663 IRVNMSEFTEAH---------SVSKITGSPPGYVGFSDSGQLTEAVRE------------ 701
Query: 128 KDGLAHRYKCVIINEANSLTKDAQAALRRTM 158
+ V+ +E D L + +
Sbjct: 702 -----KPHSVVLFDELEKAHADVFKVLLQIL 727
Score = 31.7 bits (70), Expect = 0.43, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 10/107 (9%)
Query: 6 DKYRPKSLNALSHNEELTN-FLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPG 64
+K R L + +E ++SL ++ P +L G GTGK T L+ I
Sbjct: 199 EKVRNGKLQGIYGRDEEIRAIIESLLRYNKNSP--VLVGNPGTGKTTIVEGLVYRIEKGD 256
Query: 65 VYR-------LKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNN 104
V + + ++ R+F + ++ + E E+
Sbjct: 257 VPKELQGYTVISLNFRKFTSGTSYRGEFETRMKNIIKELKNKKNKII 303
>2IXE-A nrPDB
Length = 271
Score = 33.7 bits (75), Expect = 0.13, Method: Composition-based stats.
Identities = 35/159 (22%), Positives = 62/159 (38%), Gaps = 9/159 (5%)
Query: 41 LYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVS-SPYHLEITPS 99
L GPNG+GK T ALL++++ P ++ +D V + L V + L S
Sbjct: 50 LVGPNGSGKSTVA-ALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRS 108
Query: 100 DMGNNDRIVIQELLKE--VAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQA--ALR 155
N + + E A + D G Y + N L+ + AL
Sbjct: 109 FRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALA 168
Query: 156 RTMEKYSKNIRLIMVCDSMSPIIAPIKSRCLLIRCPAPS 194
R + + RL+++ ++ S + A + R + +P
Sbjct: 169 RALIRKP---RLLILDNATSALDAGNQLRVQRLLYESPE 204
>6ED3-A nrPDB
Length = 848
Score = 33.7 bits (75), Expect = 0.14, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 9 RPKSLNALSHNE-ELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYR 67
R L+ + + E+ ++ LS + ++ P L+ G G GK L + I V
Sbjct: 173 REGKLDPVIGRDNEIRRVVQVLSRRTKNNPVLI--GEPGVGKTAIVEGLAQRIVAGDVPE 230
Query: 68 LKID 71
D
Sbjct: 231 SLRD 234
Score = 32.1 bits (71), Expect = 0.34, Method: Composition-based stats.
Identities = 39/246 (15%), Positives = 69/246 (28%), Gaps = 49/246 (19%)
Query: 28 SLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87
+SD R + GP G GK AL + +F ++ID+ ++ +
Sbjct: 592 GVSDPNRPTGAFMFLGPTGVGKTELAKALADFLFDDERAMVRIDMSEYGEKHTVARLIGA 651
Query: 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT 147
E Q ++ Y V+ +E
Sbjct: 652 PPGYVGYEA--------------------------GGQLTEAVRRRPYTVVLFDEIEKAH 685
Query: 148 KDAQAALRRTMEKYS-----------KNIRLIMVCDSMSPIIAPIKSRCLLIRCPAPSDS 196
D L + +++ +N LI+ + S A +
Sbjct: 686 PDVFDVLLQVLDEGRLTDGHGRTVDFRNTILILTSNLGSGGSAEQVLAAVRATFKP---- 741
Query: 197 EISTILSDVVTNERIQLETKDILKRIAQASNGNL-----RVSLLMLESMALNNELALKSS 251
E L DV+ E + + L RI L + L + S+ LA +
Sbjct: 742 EFINRLDDVLIFEGL---NPEELVRIVDIQLAQLGKRLAQRRLQLQVSLPAKRWLAQRGF 798
Query: 252 SPIIKP 257
P+
Sbjct: 799 DPVYGA 804
>6D00-1 nrPDB
Length = 883
Score = 33.7 bits (75), Expect = 0.14, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 13 LNALSHNEELTNF-LKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60
L+ + +E+ + ++ LS + ++ P L+ G G GK L I
Sbjct: 177 LDPVIGRDEIISRVIRVLSRRTKNNPCLV--GEPGVGKTAIAEGLANRI 223
Score = 32.5 bits (72), Expect = 0.32, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 8/70 (11%)
Query: 16 LSHNEELTNFL--------KSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYR 67
+ +E + L ++ R L L GP G GK L +F
Sbjct: 572 VVGQDEAIKAICDAIRLSRTGLQNRNRPLASFLFLGPTGCGKTLCVKELAAFLFNDPGAI 631
Query: 68 LKIDVRQFVT 77
++ID+ +++
Sbjct: 632 VRIDMSEYME 641
>5VHP-E nrPDB
Length = 262
Score = 33.7 bits (75), Expect = 0.14, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 12/61 (19%)
Query: 12 SLNALSHNEELTNFLKSLSDQPRDLPHL------------LLYGPNGTGKKTRCMALLES 59
S + + E L+ + + P P L LLYGP GTGK A+
Sbjct: 4 SYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQ 63
Query: 60 I 60
+
Sbjct: 64 L 64
>6EF3-H nrPDB
Length = 467
Score = 33.3 bits (74), Expect = 0.15, Method: Composition-based stats.
Identities = 29/230 (12%), Positives = 69/230 (30%), Gaps = 70/230 (30%)
Query: 5 VDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPH------------LLLYGPNGTGKKTR 52
V++ + + + ++ L+ + + P P +LLYGP GTGK
Sbjct: 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLC 259
Query: 53 CMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQEL 112
A+ + + ++Q+
Sbjct: 260 ARAVAN------------------------------------RTDATFIRVIGSELVQKY 283
Query: 113 LKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL-------TKDAQAALRRTMEK----- 160
+ E A+M + F+ ++ A + +E +++ ++RTM +
Sbjct: 284 VGEGARMVRELFEMARTKKAC---IIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQL 340
Query: 161 ----YSKNIRLIMVCDSMSPIIAPIKSRCLLIR---CPAPSDSEISTILS 203
NI+++ + + + + + R P + I
Sbjct: 341 DGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFR 390
>5VHO-F nrPDB
Length = 267
Score = 33.3 bits (74), Expect = 0.16, Method: Composition-based stats.
Identities = 37/203 (18%), Positives = 69/203 (33%), Gaps = 30/203 (14%)
Query: 5 VDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPG 64
+DK + + A+ ++L QP +L+YGP GTGK A
Sbjct: 26 LDKQIQELVEAIVLPMNHKEKFENLGIQPPK--GVLMYGPPGTGKTLLARACAAQTKATF 83
Query: 65 VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDF 124
+ + Q KL V + L + I I EL + ++ D
Sbjct: 84 LKLAGPQLVQMFIGDGAKL----VRDAFAL----AKEKAPSIIFIDEL--DAIGTKRFDS 133
Query: 125 QDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSR 184
+ + D R ++N+ + + Q +++I + + I+ P R
Sbjct: 134 EKAGDREVQRTMLELLNQLDGFQPNTQ-------------VKVIAATNRVD-ILDPALLR 179
Query: 185 C----LLIRCPAPSDSEISTILS 203
I P P++ + I+
Sbjct: 180 SGRLDRKIEFPMPNEEARARIMQ 202
>5W0T-A nrPDB
Length = 304
Score = 33.3 bits (74), Expect = 0.16, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 47/125 (37%), Gaps = 2/125 (1%)
Query: 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITP 98
+LLYGP G GK AL + + + + K+ + S L+
Sbjct: 80 VLLYGPPGCGKTMLAKALAKESGANFISIRMSSIMDKWYGESNKIVDAMFSLANKLQPCI 139
Query: 99 SDMGNNDRIVIQELLK--EVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRR 156
+ D + + EV + +F DGL + + +II N + A LRR
Sbjct: 140 IFIDEIDSFLRERSSTDHEVTATLKAEFMTLWDGLLNNGRVMIIGATNRINDIDDAFLRR 199
Query: 157 TMEKY 161
+++
Sbjct: 200 LPKRF 204
>6EF0-L nrPDB
Length = 273
Score = 33.3 bits (74), Expect = 0.16, Method: Composition-based stats.
Identities = 36/248 (14%), Positives = 78/248 (31%), Gaps = 72/248 (29%)
Query: 12 SLNALSHNEELTNFLKSLSDQPRDLPHL------------LLYGPNGTGKKTRCMALLES 59
+ + + E L+ + + P P + LLYGP GTGK A+ +
Sbjct: 16 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT 75
Query: 60 IFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQM 119
I N + SP ++ + + E A++
Sbjct: 76 IGA-----------------------NFIFSP-------------ASGIVDKYIGESARI 99
Query: 120 EQVDFQDSKDGLAHRYKCVIINEANS--------LTKDAQAALRRTMEKYS--------K 163
+ F +K+ + ++E ++ T + R ME +
Sbjct: 100 IREMFAYAKEHEPC---IIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG 156
Query: 164 NIRLIMVCDSMSPIIAPIKSRCLLIR---CPAPSDSEISTILSDVVTNERIQLETKDILK 220
++IM + + + L R P P+++ I + +++ + +
Sbjct: 157 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFK--IHTAKVKKTGEFDFE 214
Query: 221 RIAQASNG 228
+ S+G
Sbjct: 215 AAVKMSDG 222
>3CF0-A nrPDB
Length = 301
Score = 33.3 bits (74), Expect = 0.17, Method: Composition-based stats.
Identities = 38/233 (16%), Positives = 67/233 (28%), Gaps = 42/233 (18%)
Query: 12 SLNALSHNEELTNFLKSLSDQPRDLPH------------LLLYGPNGTGKKTRCMALLES 59
+ + E++ L+ L P + P +L YGP G GK A+
Sbjct: 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 72
Query: 60 IFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQM 119
+ + P L + + N R + + + +
Sbjct: 73 ---------------------CQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 111
Query: 120 EQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIA 179
D DS A+ + L +K I+ + II
Sbjct: 112 LFFDELDSIAKARGGNIGDGGGAADRVIN---QILTEMDGMSTKKNVFIIGATNRPDIID 168
Query: 180 PIKSRC----LLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNG 228
P R LI P P + IL + + + L+ +A+ +NG
Sbjct: 169 PAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD--LEFLAKMTNG 219
>5U1D-B nrPDB
Length = 686
Score = 33.3 bits (74), Expect = 0.17, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 29 LSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVV 88
+ +P ++ L+ GPNG+GK T ALL++++ P ++ +D + + L VV
Sbjct: 491 FTLRPGEVTALV--GPNGSGKSTVA-ALLQNLYQPTGGQVLLDEKPISQYEHCYLHSQVV 547
Query: 89 SSPYHLEITPSDMGNN 104
S + + NN
Sbjct: 548 SVGQEPVLFSGSVRNN 563
>6MCK-A nrPDB
Length = 606
Score = 33.3 bits (74), Expect = 0.19, Method: Composition-based stats.
Identities = 38/233 (16%), Positives = 67/233 (28%), Gaps = 42/233 (18%)
Query: 12 SLNALSHNEELTNFLKSLSDQPRDLPH------------LLLYGPNGTGKKTRCMALLES 59
+ + E++ L+ L P + P +L YGP G GK A+
Sbjct: 267 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 326
Query: 60 IFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQM 119
+ + P L + + N R + + + +
Sbjct: 327 ---------------------CQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 365
Query: 120 EQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIA 179
D DS A+ + L +K I+ + II
Sbjct: 366 LFFDELDSIAKARGGNIGDGGGAADRVIN---QILTEMDGMSTKKNVFIIGATNRPDIID 422
Query: 180 PIKSRC----LLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNG 228
P R LI P P + IL + + + L+ +A+ +NG
Sbjct: 423 PAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD--LEFLAKMTNG 473
Score = 32.9 bits (73), Expect = 0.22, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 39 LLLYGPNGTGKKTRCMALLES 59
+LLYGP GTGK A+
Sbjct: 33 ILLYGPPGTGKTLIARAVANE 53
>5C18-A nrPDB
Length = 785
Score = 32.9 bits (73), Expect = 0.19, Method: Composition-based stats.
Identities = 38/233 (16%), Positives = 67/233 (28%), Gaps = 42/233 (18%)
Query: 12 SLNALSHNEELTNFLKSLSDQPRDLPH------------LLLYGPNGTGKKTRCMALLES 59
+ + E++ L+ L P + P +L YGP G GK A+
Sbjct: 474 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 533
Query: 60 IFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQM 119
+ + P L + + N R + + + +
Sbjct: 534 ---------------------CQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 572
Query: 120 EQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIA 179
D DS A+ + L +K I+ + II
Sbjct: 573 LFFDELDSIAKARGGNIGDGGGAADRVIN---QILTEMDGMSTKKNVFIIGATNRPDIID 629
Query: 180 PIKSRC----LLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNG 228
P R LI P P + IL + + + L+ +A+ +NG
Sbjct: 630 PAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD--LEFLAKMTNG 680
Score = 32.9 bits (73), Expect = 0.22, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 39 LLLYGPNGTGKKTRCMALLES 59
+LLYGP GTGK A+
Sbjct: 240 ILLYGPPGTGKTLIARAVANE 260
>6MSD-E nrPDB
Length = 403
Score = 32.9 bits (73), Expect = 0.19, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 12/61 (19%)
Query: 12 SLNALSHNEELTNFLKSLSDQPRDLPHL------------LLYGPNGTGKKTRCMALLES 59
S + + E L+ + + P P L LLYGP GTGK A+
Sbjct: 145 SYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQ 204
Query: 60 I 60
+
Sbjct: 205 L 205
>5VHO-A nrPDB
Length = 267
Score = 32.9 bits (73), Expect = 0.19, Method: Composition-based stats.
Identities = 31/230 (13%), Positives = 68/230 (29%), Gaps = 70/230 (30%)
Query: 5 VDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPH------------LLLYGPNGTGKKTR 52
V++ + + + +E L+ + + P P +LL+GP GTGK
Sbjct: 9 VEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLC 68
Query: 53 CMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQEL 112
A+ + ++Q+
Sbjct: 69 ARAVAN------------------------------------RTDACFIRVIGSELVQKY 92
Query: 113 LKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL-------TKDAQAALRRTMEK----- 160
+ E A+M + F+ ++ A + +E +++ ++RTM +
Sbjct: 93 VGEGARMVRELFEMARTKKAC---LIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQL 149
Query: 161 ----YSKNIRLIMVCDSMSPIIAPIKSRCLL---IRCPAPSDSEISTILS 203
NI+++M + + + L I P + I
Sbjct: 150 DGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFK 199
>5KWA-A nrPDB
Length = 497
Score = 32.9 bits (73), Expect = 0.20, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 46/135 (34%), Gaps = 22/135 (16%)
Query: 14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVR 73
+A+ + S +P +LLYGP G GK A+ S+ K+
Sbjct: 161 DAVELPFLHKELYREYSLRPPK--GVLLYGPPGCGKTLIAKAVANSL------AKKMAEV 212
Query: 74 QFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAH 133
+ A K + P L + + R++ Q ++ ++ V
Sbjct: 213 RGDDAHEAKSYFLNIKGPELLNKFVGETERHIRLIFQRAREKASEGTPV----------- 261
Query: 134 RYKCVIINEANSLTK 148
V +E +S+ +
Sbjct: 262 ---IVFFDEMDSIFR 273
>5VFU-A nrPDB
Length = 361
Score = 32.9 bits (73), Expect = 0.22, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 12/65 (18%)
Query: 5 VDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPH------------LLLYGPNGTGKKTR 52
V++ + + + +E L+ + + P P +LL+GP GTGK
Sbjct: 94 VEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLC 153
Query: 53 CMALL 57
A+
Sbjct: 154 ARAVA 158
>3HU1-A nrPDB
Length = 489
Score = 32.9 bits (73), Expect = 0.23, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 39 LLLYGPNGTGKKTRCMALLES 59
+LLYGP GTGK A+
Sbjct: 241 ILLYGPPGTGKTLIARAVANE 261
>1YE8-A nrPDB
Length = 178
Score = 32.9 bits (73), Expect = 0.24, Method: Composition-based stats.
Identities = 20/148 (13%), Positives = 53/148 (35%), Gaps = 4/148 (2%)
Query: 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITP 98
+++ G G GK T ++E + + +VR T + + +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 99 SDMGNNDRIVIQELLKEVAQME-QVDFQDSKDGLAHRYKCVIINEANSL---TKDAQAAL 154
++ ++ + + ++ R K +II+E + +K + +
Sbjct: 63 FFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLV 122
Query: 155 RRTMEKYSKNIRLIMVCDSMSPIIAPIK 182
R+ M + N+ + + P++ I+
Sbjct: 123 RQIMHDPNVNVVATIPIRDVHPLVKEIR 150
>5UJM-A nrPDB
Length = 522
Score = 32.9 bits (73), Expect = 0.24, Method: Composition-based stats.
Identities = 52/289 (17%), Positives = 101/289 (34%), Gaps = 35/289 (12%)
Query: 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITP 98
+ + G GTGK ++ + + Q++ + KL E
Sbjct: 191 MYISGVPGTGKTATVHEVIRCL-QQAAQANDVPPFQYIEVNGMKL----------TEPHQ 239
Query: 99 SDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTM 158
+ ++ Q+ A E + Q G ++++E + L Q +
Sbjct: 240 VYVQILQKLTGQKATANHA-AELLAKQFCTRGSPQETTVLLVDELDILWTHKQDIMYNLF 298
Query: 159 EKYS-KNIRLIMVC-----DSMSPI-IAPIKSRCLLIR--CPAPSDSEISTILSDVVTNE 209
+ + K RL+++ D I + + SR L R + S++ IL + +
Sbjct: 299 DWPTHKEARLVVLAIANTMDLPERIMMNRVSSRLGLTRMCFQPYTYSQLQQILRSRLKH- 357
Query: 210 RIQLETKDILKRIAQ---ASNGNLRVSLLMLESMALNNELALKSSSPIIKPDW-IIVIHK 265
++ D ++ +A+ A +G+ R L + E + + KPD +V
Sbjct: 358 -LKAFEDDAIQLVARKVAALSGDARRCLDICRRATEICEFSQQ------KPDSPGLVTIA 410
Query: 266 LTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLN 314
+ + V E +S I L + A IL E S L+ T
Sbjct: 411 HSMEAVDEMFSSSYITAIKNSSVLEQSFLRA--ILAEFRRSGLEEATFQ 457
>4WW4-B nrPDB
Length = 513
Score = 32.5 bits (72), Expect = 0.25, Method: Composition-based stats.
Identities = 29/182 (15%), Positives = 65/182 (35%), Gaps = 19/182 (10%)
Query: 77 TASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYK 136
T S ++++ + L + D G + ++ +VA+ ++ + G
Sbjct: 265 TVSLHEIDVINSRTQGFLALFSGDTGEIRSEIRDQINTKVAEWKEEGKAEIVPG------ 318
Query: 137 CVIINEANSLTKDAQAALRRTME---------KYSKNIRLIMVCDS--MSPIIAPIKSRC 185
+ I+E + L + + + R +E ++ + I D + R
Sbjct: 319 VLFIDEVHMLDIECFSYINRALESDLAPIVIMASNRGVSRIRGTDYKSPHGLPLDFLDRV 378
Query: 186 LLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQAS-NGNLRVSLLMLESMALNN 244
++I + E+ ILS E + L T D L + + LR + ++ + L
Sbjct: 379 VIINTHPYTPDELRQILSIRAQEEEVDL-TPDALALLTKIGQEAGLRYASNLITTSQLIA 437
Query: 245 EL 246
Sbjct: 438 AK 439
Score = 29.8 bits (65), Expect = 2.0, Method: Composition-based stats.
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 39 LLLYGPNGTGKKTRCMALLESI 60
+L+ GP TGK M + +S+
Sbjct: 98 VLIAGPPSTGKTAIAMGMAQSL 119
>3H1T-A nrPDB
Length = 590
Score = 32.5 bits (72), Expect = 0.25, Method: Composition-based stats.
Identities = 22/174 (12%), Positives = 54/174 (31%), Gaps = 13/174 (7%)
Query: 5 VDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPG 64
V Y P+ + + N Q + L+ GTGK + ++
Sbjct: 174 VSGYSPR-----YYQQIAINRAVQSVLQGKK--RSLITMATGTGKTVVAFQISWKLWSAR 226
Query: 65 VYRL-KIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVD 123
R + + ++R + ++ + V++ A + +
Sbjct: 227 WNRTGDYRKPRILFLADRNVLVDDPKDKTFTPFGDARHKIEGGKVVKSREIYFAIYQSIA 286
Query: 124 FQDSKDGLAHRY-----KCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCD 172
+ + GL + +II+E + + + R +E + ++ M
Sbjct: 287 SDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWREILEYFEPAFQIGMTAT 340
>4XGU-A nrPDB
Length = 424
Score = 32.5 bits (72), Expect = 0.25, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 39 LLLYGPNGTGKKTRCMALLESI 60
+LL GP GTGK + C L + +
Sbjct: 175 ILLTGPPGTGKTSLCKGLAQHL 196
>5L3S-B nrPDB
Length = 296
Score = 32.5 bits (72), Expect = 0.26, Method: Composition-based stats.
Identities = 20/147 (13%), Positives = 54/147 (36%), Gaps = 16/147 (10%)
Query: 11 KSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKI 70
KS+ + + T+ ++ + + ++ +G NG GK T ++ + + +
Sbjct: 76 KSITEILTKNQKTDLIEKIRSSGKKPFVIIFFGVNGVGKTTTIAKVVNMLKKNNLSTIIA 135
Query: 71 DVRQFVTASN-------RKLELNVVSSPYHLE--------ITPSDMGNNDRIVIQELLK- 114
F A+ KLE+ ++ Y + I+ + N D ++I +
Sbjct: 136 ASDTFRAAAQEQLAYHASKLEVQLIRGKYGADPASVAFDAISFAKSRNIDVVLIDTAGRM 195
Query: 115 EVAQMEQVDFQDSKDGLAHRYKCVIIN 141
+ + + ++ +I++
Sbjct: 196 HIDSDLVEELKKVLRIAKPDFRILILD 222
>1JBK-A nrPDB
Length = 195
Score = 32.5 bits (72), Expect = 0.26, Method: Composition-based stats.
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 6 DKYRPKSLNALSHNEELTNF-LKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60
++ L+ + +E ++ L + ++ P L+ G G GK L + I
Sbjct: 14 ERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLI--GEPGVGKTAIVEGLAQRI 67
>5WVI-L nrPDB
Length = 437
Score = 32.5 bits (72), Expect = 0.28, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 12/61 (19%)
Query: 12 SLNALSHNEELTNFLKSLSDQPRDLPHL------------LLYGPNGTGKKTRCMALLES 59
+ + + E L+ + + P P + LLYGP GTGK A+ +
Sbjct: 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT 238
Query: 60 I 60
I
Sbjct: 239 I 239
>6FVU-L nrPDB
Length = 388
Score = 32.5 bits (72), Expect = 0.28, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 12/61 (19%)
Query: 12 SLNALSHNEELTNFLKSLSDQPRDLPHL------------LLYGPNGTGKKTRCMALLES 59
+ + + E L+ + + P P + LLYGP GTGK A+ +
Sbjct: 131 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT 190
Query: 60 I 60
I
Sbjct: 191 I 191
>6EPC-H nrPDB
Length = 433
Score = 32.5 bits (72), Expect = 0.28, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 12/65 (18%)
Query: 5 VDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPH------------LLLYGPNGTGKKTR 52
V++ + + + +E L+ + + P P +LL+GP GTGK
Sbjct: 166 VEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLC 225
Query: 53 CMALL 57
A+
Sbjct: 226 ARAVA 230
>5VFP-F nrPDB
Length = 396
Score = 32.5 bits (72), Expect = 0.29, Method: Composition-based stats.
Identities = 37/203 (18%), Positives = 69/203 (33%), Gaps = 30/203 (14%)
Query: 5 VDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPG 64
+DK + + A+ ++L QP +L+YGP GTGK A
Sbjct: 148 LDKQIQELVEAIVLPMNHKEKFENLGIQPPK--GVLMYGPPGTGKTLLARACAAQTKATF 205
Query: 65 VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDF 124
+ + Q KL V + L + I I EL + ++ D
Sbjct: 206 LKLAGPQLVQMFIGDGAKL----VRDAFAL----AKEKAPSIIFIDEL--DAIGTKRFDS 255
Query: 125 QDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSR 184
+ + D R ++N+ + + Q +++I + + I+ P R
Sbjct: 256 EKAGDREVQRTMLELLNQLDGFQPNTQ-------------VKVIAATNRVD-ILDPALLR 301
Query: 185 C----LLIRCPAPSDSEISTILS 203
I P P++ + I+
Sbjct: 302 SGRLDRKIEFPMPNEEARARIMQ 324
>3SYK-A nrPDB
Length = 309
Score = 32.5 bits (72), Expect = 0.31, Method: Composition-based stats.
Identities = 31/195 (15%), Positives = 61/195 (31%), Gaps = 52/195 (26%)
Query: 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEIT 97
H+ G GTGK T + + + L V + + +T
Sbjct: 69 HMSFTGNPGTGKTTVALKMAGLLH----------------------RLGYVRKGHLVSVT 106
Query: 98 PSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK--------- 148
D+ KEV + + I+EA L +
Sbjct: 107 RDDLVGQYIGHTAPKTKEVLKRAMGG-------------VLFIDEAYYLYRPDNERDYGQ 153
Query: 149 DAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKS----RCLL---IRCPAPSDSEISTI 201
+A L + ME ++ ++++ + +S R + I P SD E+ I
Sbjct: 154 EAIEILLQVMENNRDDL-VVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEI 212
Query: 202 LSDVVTNERIQLETK 216
++ ++ Q+ +
Sbjct: 213 AGHMLDDQNYQMTPE 227
>3JC7-2 nrPDB
Length = 868
Score = 32.5 bits (72), Expect = 0.31, Method: Composition-based stats.
Identities = 32/235 (13%), Positives = 68/235 (28%), Gaps = 46/235 (19%)
Query: 137 CVIINEANSLTKDAQAALRRTMEKYS-------------KNIRLIMVCD----------- 172
+I+E + + + ++ ME+ S +I +
Sbjct: 603 VCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTTLQARCSIIAAANPNGGRYNSTLP 662
Query: 173 --SMSPIIAPIKSR----CLLIRCPAPSDSEISTILSDVVTNERIQLETKDIL------- 219
+ PI SR C++ D E L+ V + ++ ++
Sbjct: 663 LAQNVSLTEPILSRFDILCVV---RDLVDEEADERLATFVVDSHVRSHPENDEDREGEEL 719
Query: 220 ----KRIAQASNGNLRVSLLMLESMALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERS 275
+ + + L + + SPI + + IH KI +
Sbjct: 720 KNNGESAIEQGEDEINEQLNARQRRLQRQRKKEEEISPIPQELLMKYIHYARTKIYPKLH 779
Query: 276 VNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNTTN-KSSIIEYSSVFD 329
+ + V DL I + L + + + K + E+ S +D
Sbjct: 780 QMDMDKVSRVYADLRRESISTGSFPITV-RHLESILRIAESFAKMRLSEFVSSYD 833
>3PXG-A nrPDB
Length = 468
Score = 32.1 bits (71), Expect = 0.33, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 9 RPKSLNALSHNEELTNF-LKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYR 67
+ SL+ + + ++ LS + ++ P L+ G G GK L + I V
Sbjct: 175 KEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLI--GEPGVGKTAIAEGLAQQIINNEVPE 232
Query: 68 LKIDVR 73
+ D R
Sbjct: 233 ILRDKR 238
>6EPD-M nrPDB
Length = 442
Score = 32.1 bits (71), Expect = 0.34, Method: Composition-based stats.
Identities = 37/203 (18%), Positives = 69/203 (33%), Gaps = 30/203 (14%)
Query: 5 VDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPG 64
+DK + + A+ ++L QP +L+YGP GTGK A
Sbjct: 194 LDKQIQELVEAIVLPMNHKEKFENLGIQPPK--GVLMYGPPGTGKTLLARACAAQTKATF 251
Query: 65 VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDF 124
+ + Q KL V + L + I I EL + ++ D
Sbjct: 252 LKLAGPQLVQMFIGDGAKL----VRDAFAL----AKEKAPSIIFIDEL--DAIGTKRFDS 301
Query: 125 QDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSR 184
+ + D R ++N+ + + Q +++I + + I+ P R
Sbjct: 302 EKAGDREVQRTMLELLNQLDGFQPNTQ-------------VKVIAATNRVD-ILDPALLR 347
Query: 185 C----LLIRCPAPSDSEISTILS 203
I P P++ + I+
Sbjct: 348 SGRLDRKIEFPMPNEEARARIMQ 370
>1IHU-A nrPDB
Length = 589
Score = 32.1 bits (71), Expect = 0.37, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 38/122 (31%), Gaps = 8/122 (6%)
Query: 37 PHLLLYGPNGTGKKT----RCMALLES----IFGPGVYRLKIDVRQFVTASNRKLELNVV 88
P+L G G GK + + L E + + T N + V
Sbjct: 9 PYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTIGNTIQAIASV 68
Query: 89 SSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK 148
LEI P R I + +K V + V + + A + +E L
Sbjct: 69 PGLSALEIDPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLT 128
Query: 149 DA 150
DA
Sbjct: 129 DA 130
>5FM7-A nrPDB
Length = 464
Score = 32.1 bits (71), Expect = 0.38, Method: Composition-based stats.
Identities = 17/98 (17%), Positives = 38/98 (38%), Gaps = 1/98 (1%)
Query: 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITP 98
+LL G GTGK +A+ + + G + I + + +K E+ + + + +
Sbjct: 69 VLLAGGPGTGKTALALAISQEL-GTKIPFCPITGSEIYSTEVKKTEVLMENFRRAIGLRV 127
Query: 99 SDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYK 136
+ + + E+ E A+ + + L K
Sbjct: 128 RETKDVYEGEVTEMTPEEAENPLGGYGKTISTLLIGLK 165
Score = 31.4 bits (69), Expect = 0.67, Method: Composition-based stats.
Identities = 24/134 (17%), Positives = 48/134 (35%), Gaps = 19/134 (14%)
Query: 137 CVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCD-------------SMSPIIAPIKS 183
+ I+EA+ L + L + +E I +++ + + I
Sbjct: 301 VLFIDEAHMLDIECFTYLNKALESPIAPI-VVLASNRGIATIRGADDLKAAHGIPPDFLQ 359
Query: 184 RCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLL-MLESMAL 242
R L+I EI I+ E +QL + + + +R+SL L+ +A
Sbjct: 360 RLLIIPTHPYEPDEIRRIVRIRAQTEGVQLTD----AAVDRVAEHGVRISLRYCLQLLAP 415
Query: 243 NNELALKSSSPIIK 256
+ LA + +
Sbjct: 416 ASILARVNGRTQVD 429
>4XGC-D nrPDB
Length = 459
Score = 32.1 bits (71), Expect = 0.38, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 19/139 (13%)
Query: 23 TNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI-----FGPGVYRLKIDVRQFVT 77
L + + + LLL GP G+GK T ++L + FG + +D
Sbjct: 36 VRLLLQRTAEMGESNSLLLLGPRGSGKTTLINSVLADLLPNKSFGENTLIVHLDGNLH-- 93
Query: 78 ASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKC 137
++ ++ L ++ LE ++ A+ Q K G H
Sbjct: 94 -TDDRVALKSITVQMQLENAADG----------KVFGSFAENLAFLLQCLKAGGKHSKSV 142
Query: 138 V-IINEANSLTKDAQAALR 155
+ I+ E + L
Sbjct: 143 IFILEEFDLFCAHHNQTLL 161
>6HA8-V nrPDB
Length = 548
Score = 32.1 bits (71), Expect = 0.42, Method: Composition-based stats.
Identities = 30/156 (19%), Positives = 52/156 (33%), Gaps = 24/156 (15%)
Query: 43 GPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMG 102
GPNG+GK T LL I G + V E+ + E +
Sbjct: 330 GPNGSGKTT----LLNIILGQETAEGSVWVSPSANIGYLTQEVFDLPLEQTPEELFENET 385
Query: 103 NNDRIVIQELLKEVAQMEQVDFQDSKD-GLAHRYKC----VIINEANSLTKD-------- 149
R +Q L++ + + K + R K I+ E + L D
Sbjct: 386 FKARGHVQNLMRHLGFTAAQWTEPIKHMSMGERVKIKLMAYILEEKDVLILDQPTNHLDL 445
Query: 150 -AQAALRRTMEKYS------KNIRLIMVCDSMSPII 178
++ L T+ +YS + R + + S ++
Sbjct: 446 PSREQLEETLSQYSGTLLAVSHDRYFLEKTTNSKLV 481
>1LV7-A nrPDB
Length = 257
Score = 31.7 bits (70), Expect = 0.49, Method: Composition-based stats.
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 11/59 (18%)
Query: 12 SLNALSHNEELTNFLKSLSDQ----------PRDLPH-LLLYGPNGTGKKTRCMALLES 59
+ ++ +E + L + +P +L+ GP GTGK A+
Sbjct: 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68
>6EF0-M nrPDB
Length = 258
Score = 31.7 bits (70), Expect = 0.51, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 41/118 (34%), Gaps = 14/118 (11%)
Query: 40 LLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKL-----ELNVVSSPYHL 94
L+YGP GTGK A + + Q KL L +P +
Sbjct: 44 LMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTII 103
Query: 95 EITPSD---------MGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEA 143
I D + DR V + +L+ + Q++ D LA + +++ A
Sbjct: 104 FIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPA 161
>6AMN-A nrPDB
Length = 349
Score = 31.7 bits (70), Expect = 0.51, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 6 DKYRPKSLNALSHNEELT-NFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPG 64
++ R L+ + EE + ++ L+ + + P L+ G G GK + + I
Sbjct: 173 EQARQGKLDPVIGREEEIRSTIRVLARRIKSNPCLI--GEPGIGKTAIIEGVAQRIIDDD 230
Query: 65 VYRLKIDVRQF 75
V + + F
Sbjct: 231 VPTILQGAKLF 241
>2AKY-A nrPDB
Length = 220
Score = 31.7 bits (70), Expect = 0.51, Method: Composition-based stats.
Identities = 23/170 (13%), Positives = 50/170 (29%), Gaps = 12/170 (7%)
Query: 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITP 98
++L GP G GK T+ L E + + Q + LE + L
Sbjct: 7 MVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGL---- 62
Query: 99 SDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTM 158
++ ++K+ ++ + + + K+ L + +
Sbjct: 63 -----VSDDIMVNMIKDELTNNPA-CKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAI 116
Query: 159 EKYSKNIRLIMVCDSMSPIIAPIKSRCLLIRCPAPSDSEISTILSDVVTN 208
E K ++V +I P R P + + + +
Sbjct: 117 EL--KVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQ 164
>5D0U-A nrPDB
Length = 714
Score = 31.4 bits (69), Expect = 0.57, Method: Composition-based stats.
Identities = 34/191 (17%), Positives = 72/191 (37%), Gaps = 9/191 (4%)
Query: 39 LLLYGPNGTGKKTRC--MALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEI 96
L+ G G+GK T+ L + + + + V A + + E
Sbjct: 57 LVFVGETGSGKTTQIPQYVLYDELPHQTGKLIACTQPRRVAAMSVAQRVADELDVKLGEE 116
Query: 97 TPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEAN--SLTKDAQAAL 154
+ ++ + LLK Q+ + D RY C+I++EA+ +L D AL
Sbjct: 117 VGYSIRFENKTSSKTLLK-YMTDGQLLREAMHDRDMSRYSCIILDEAHERTLATDILMAL 175
Query: 155 RRTMEKYSKNIRLIMVCDSMSPIIAPIKSRCLLIRCPAPSDSEISTILSDVVTNERIQLE 214
+ + + K++++I+ MS + K + P + + + T E +
Sbjct: 176 LKQLSERRKDLKIIV----MSATLDAQKFQSYFFNAPLLAVPGRTHPVEIFYTPEAERDY 231
Query: 215 TKDILKRIAQA 225
+ ++ + Q
Sbjct: 232 VEAAIRTVLQI 242
>6MAT-A nrPDB
Length = 813
Score = 31.4 bits (69), Expect = 0.65, Method: Composition-based stats.
Identities = 41/222 (18%), Positives = 78/222 (35%), Gaps = 29/222 (13%)
Query: 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITP 98
+LL+GP+G GK T A+ SI + VS+P + T
Sbjct: 239 VLLHGPSGCGKTTLAHAIAGSI---------------------GVAFIPVSAPSVIGGTS 277
Query: 99 SDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTM 158
+ N R V E ++ + F D D +A R + + + + + R
Sbjct: 278 GESEKNIRDVFDEAIR---LAPCLIFLDQIDAIAGRRESANKGMESRIVAEIMNGMDRIR 334
Query: 159 EKYS--KNIRLIMVCDSMSPIIAPIKSRCLL-IRCPAPSDSEISTILSDVVTNERIQLET 215
+ KN+ ++ + + I+ R + I PS+ IL + + L
Sbjct: 335 QNTPLGKNVVVLAATNRPEFLDPAIRRRFSVEIDMGMPSERAREQILRSLTR--DLSLAD 392
Query: 216 KDILKRIAQASNGNLRVSLLMLESMALNNELALKSSSPIIKP 257
K +A+ + G + L + A++ S + +
Sbjct: 393 DINFKELAKMTPGYVGSDLQYVVKAAVSESFQANIDSLLAQA 434
Score = 30.2 bits (66), Expect = 1.5, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 5 VDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLES 59
++ R K ++ + + +P +LL+GP G GK A+
Sbjct: 506 LEDVRKKLEMSIIGPIKNPELFTRVGIKPAA--GILLWGPPGCGKTLVAKAVANE 558
>5VY8-A nrPDB
Length = 908
Score = 31.4 bits (69), Expect = 0.66, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 6 DKYRPKSLNALSHNEELT-NFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPG 64
++ R L+ + EE + ++ L+ + + P L+ G G GK + + I
Sbjct: 176 EQARQGKLDPVIGREEEIRSTIRVLARRIKSNPCLI--GEPGIGKTAIIEGVAQRIIDDD 233
Query: 65 VYRLKIDVRQF 75
V + + F
Sbjct: 234 VPTILQGAKLF 244
>3HV2-A nrPDB
Length = 153
Score = 31.4 bits (69), Expect = 0.66, Method: Composition-based stats.
Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 4/131 (3%)
Query: 84 ELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV--DFQDSKDGLAHRYKCVIIN 141
ELNV + EI D +Q+LL + D + LA R ++I+
Sbjct: 5 ELNVATVTRRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVIS 64
Query: 142 EANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSRCLLIRC--PAPSDSEIS 199
A+ D L R ++Y R+++ D +IA + + R D E+
Sbjct: 65 AAHLPQMDGPTLLARIHQQYPSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELL 124
Query: 200 TILSDVVTNER 210
L + ++
Sbjct: 125 LALRQALEHQH 135
>5V8F-A nrPDB
Length = 913
Score = 31.4 bits (69), Expect = 0.69, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 50/135 (37%), Gaps = 14/135 (10%)
Query: 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITP 98
+ + G G GK +++ + R ++ F+ L++ + Y
Sbjct: 475 IYVAGTPGVGKTLTVREVVKELLSSSAQR---EIPDFLYVEINGLKMVKPTDCYETLWNK 531
Query: 99 SDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVI-INEANSLTKDAQAALRRT 157
V E L A ME ++F + + V+ ++E +++ +Q +
Sbjct: 532 ---------VSGERLTWAASMESLEFYFKRVPKNKKKTIVVLLDELDAMVTKSQDIMYNF 582
Query: 158 MEKYS-KNIRLIMVC 171
+ +N +LI++
Sbjct: 583 FNWTTYENAKLIVIA 597
>2X8A-A nrPDB
Length = 274
Score = 31.4 bits (69), Expect = 0.70, Method: Composition-based stats.
Identities = 36/200 (18%), Positives = 60/200 (30%), Gaps = 40/200 (20%)
Query: 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITP 98
+LL GP G GK A+ + L + V S +
Sbjct: 47 VLLAGPPGCGKTLLAKAVANE----------SGLNFISVKGPELLNMYVGESERAVRQVF 96
Query: 99 SDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCV--IINEANSLTKDAQAALRR 156
N+ VI +++ + + S + V ++ E + L Q
Sbjct: 97 QRAKNSAPCVIF-----FDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQV---- 147
Query: 157 TMEKYSKNIRLIMVCDSMSPIIAPIKSRCLLIR----CPAPSDSEISTILSDVVTN-ERI 211
IM + II P R + P ++ IL + N +
Sbjct: 148 ----------FIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKP 197
Query: 212 QLETKDILKRIAQASNGNLR 231
L+ L+ IA G+LR
Sbjct: 198 PLDADVNLEAIA----GDLR 213
>4M4W-J nrPDB
Length = 317
Score = 31.4 bits (69), Expect = 0.72, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 20 EELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS 79
+ +T+FLKS ++ + L LYG G GK A+ + + + V +FV
Sbjct: 146 QHVTDFLKSYNETGKG-KGLYLYGKFGVGKTFMLAAIANELAEKEYSSMIVYVPEFVREL 204
Query: 80 NRKLE 84
L+
Sbjct: 205 KNSLQ 209
>2FZ4-A nrPDB
Length = 237
Score = 31.4 bits (69), Expect = 0.72, Method: Composition-based stats.
Identities = 19/107 (17%), Positives = 36/107 (33%), Gaps = 14/107 (13%)
Query: 44 PNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGN 103
P G+GK MA + + P + I V A K L + Y E +
Sbjct: 116 PTGSGKTHVAMAAINELSTPTL----IVVPTLALAEQWKERLGIFGEEYVGEF-SGRIKE 170
Query: 104 NDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDA 150
+ + E++ +R+ +I +E + L ++
Sbjct: 171 LKPLTVSTYDSAYVNAEKL---------GNRFMLLIFDEVHHLPAES 208
>2IUS-A nrPDB
Length = 512
Score = 31.0 bits (68), Expect = 0.76, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 57/145 (39%), Gaps = 13/145 (8%)
Query: 7 KYR--PKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPG 64
K+R P L + + + +PHLL+ G G+G A++ S+
Sbjct: 139 KFRDNPSPLTVVLGKDIAGE---PVVADLAKMPHLLVAGTTGSGASVGVNAMILSM---- 191
Query: 65 VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDF 124
+Y+ + + +F+ + LEL+V HL + ++ + E+ + ++
Sbjct: 192 LYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMS 251
Query: 125 QDS-KDGLAHRYKCVIINEANSLTK 148
++ + K EA+ + +
Sbjct: 252 ALGVRNLAGYNEKIA---EADRMMR 273
>3JC8-Ba nrPDB
Length = 566
Score = 31.0 bits (68), Expect = 0.77, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 3/96 (3%)
Query: 26 LKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKI-DVRQFVTASNRKLE 84
K D+P + +L+ GP G+GK T + L S+ G D +F A +++
Sbjct: 306 FKEAIDRPYGM--VLVTGPTGSGKTTTLYSALSSLNGLDTNICTAEDPVEFNFAGINQVQ 363
Query: 85 LNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQME 120
++ S + + I++ +++ E
Sbjct: 364 MHDDIGLNFAAALRSFLRQDPDIIMIGEIRDFETAE 399
>3FHC-B nrPDB
Length = 235
Score = 31.0 bits (68), Expect = 0.77, Method: Composition-based stats.
Identities = 20/140 (14%), Positives = 53/140 (37%), Gaps = 8/140 (5%)
Query: 38 HLLLYGPNGTGKKTR-CMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEI 96
+L+ +GTGK +A+L + Y + + + + ++ ++ E+
Sbjct: 66 NLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPEL 125
Query: 97 T-PSDMGNNDRIVIQELLKEVAQMEQVDFQD----SKDGLAHRYKCVIINEANSL--TKD 149
+ N Q++ +++ D K + K +++EA+ + T+
Sbjct: 126 KLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQG 185
Query: 150 AQAALRRTMEKYSKNIRLIM 169
Q R +N ++++
Sbjct: 186 HQDQSIRIQRMLPRNCQMLL 205
>1P4S-A nrPDB
Length = 181
Score = 31.0 bits (68), Expect = 0.84, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITP 98
+LL GP G GK T+ + L E + P + ++ R + KL + ++ P
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGT--KLGVEAKRYLDAGDLVP 60
Query: 99 SDMGN 103
SD+ N
Sbjct: 61 SDLTN 65
>4HSE-A nrPDB
Length = 397
Score = 31.0 bits (68), Expect = 0.84, Method: Composition-based stats.
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 13 LNALSHNEELTNFLKSLSDQ-PRDLPHLLLYGPNGTGKKTRCMALLESIFGPGV 65
L+ + +E + + + ++ P L+ G G GK L + I V
Sbjct: 32 LDPVIGRDEEIRRVIQILLRRTKNNPVLI--GEPGVGKTAIVEGLAQRIVKGDV 83
>2P65-A nrPDB
Length = 187
Score = 31.0 bits (68), Expect = 0.84, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 9 RPKSLNALSHNEELTNF-LKSLSDQPRDLPHLLLYGPNGTGKKTRCMALL 57
R L+ + + ++ LS + ++ P LL G G GK L
Sbjct: 17 RAGKLDPVIGRDTEIRRAIQILSRRTKNNPILL--GDPGVGKTAIVEGLA 64
>5E7P-A nrPDB
Length = 745
Score = 31.0 bits (68), Expect = 0.86, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 39 LLLYGPNGTGKKTRCMALLES 59
+LLYGP G GK AL S
Sbjct: 522 VLLYGPPGCGKTFVVRALASS 542
Score = 31.0 bits (68), Expect = 0.93, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 34 RDLPHL--LLYGPNGTGKKTRCMALLE-----SIFGPGVYRLKIDVRQFVTAS 79
PHL L+ GP G GK T A+ + GP V L++D R S
Sbjct: 259 GATPHLGVLVSGPAGVGKATMVRAVCASRRVVELDGPEVGALQVDERLRSVTS 311
>6F8L-G nrPDB
Length = 913
Score = 31.0 bits (68), Expect = 0.93, Method: Composition-based stats.
Identities = 28/176 (15%), Positives = 59/176 (33%), Gaps = 14/176 (7%)
Query: 22 LTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKI-DVRQFVTASN 80
+ K + +P + L+ GP G+GK ++L+ I P I D ++
Sbjct: 629 VFERFKEVISKPYGI--FLITGPTGSGKSFTTFSILKRIATPDKNTQTIEDPVEYEIPGI 686
Query: 81 RKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVII 140
+ ++N + + + + I++ +++ + L
Sbjct: 687 NQTQVNPQAGLTFARALRAFLRQDPDIIMVGEIRDSETAKIATEAALTGHLVI------- 739
Query: 141 NEANSLTKDAQAALRRTMEK--YSKNIRLIMVCDSMSPIIAPIKSRCLLIRCPAPS 194
A T DA A+ R E NI ++ ++ + C + P P
Sbjct: 740 --ATLHTNDAAQAITRLDEMGVEPFNISAALIGVLSQRLVRRVCEHCKVEVKPDPE 793
>5A5B-M nrPDB
Length = 434
Score = 31.0 bits (68), Expect = 0.93, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 41/118 (34%), Gaps = 14/118 (11%)
Query: 40 LLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKL-----ELNVVSSPYHL 94
L+YGP GTGK A + + Q KL L +P +
Sbjct: 219 LMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTII 278
Query: 95 EITPSD---------MGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEA 143
I D + DR V + +L+ + Q++ D LA + +++ A
Sbjct: 279 FIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPA 336
>3CM0-A nrPDB
Length = 186
Score = 31.0 bits (68), Expect = 0.93, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 51/147 (34%), Gaps = 22/147 (14%)
Query: 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLEL-------NVVSSP 91
++ GP G GK T+ L + + + I + + ++V
Sbjct: 7 VIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDD 66
Query: 92 YHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDG-------------LAHRYKCV 138
LE+ ++ +R++ + +AQ E +D S+ G + +
Sbjct: 67 LILELIREELA--ERVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRIL 124
Query: 139 IINEANSLTKDAQAALRRTMEKYSKNI 165
E + D + +RR +E Y +
Sbjct: 125 RRAELEGRSDDNEETVRRRLEVYREKT 151
>1FNN-A nrPDB
Length = 389
Score = 31.0 bits (68), Expect = 0.93, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 77/244 (31%), Gaps = 43/244 (17%)
Query: 33 PRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPY 92
P L G GTGK L E +Y+ K R +
Sbjct: 41 GHHYPRATLLGRPGTGKTVTLRKLWE------LYKDKTTARFVYINGFIYRNFTAIIGEI 94
Query: 93 HLEIT-PSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQ 151
+ P R LL E + + Y +++++A +L D
Sbjct: 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDL------------YMFLVLDDAFNLAPDIL 142
Query: 152 AALRRTMEKYSKNIRLIMV----------CDSMSPIIAPIKSRCLLIRCPAPSDSEISTI 201
+ R ++ K + +++ P I + +IR + +I I
Sbjct: 143 STFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGK-YVIRFSPYTKDQIFDI 201
Query: 202 LSDVVTNERIQLE--TKDILKRIAQASN---------GNLRVSLLML-ESMALNNELALK 249
L D + ++DIL+ IA + G+ R+++ +L S + K
Sbjct: 202 LLDRAK-AGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRK 260
Query: 250 SSSP 253
+P
Sbjct: 261 HIAP 264
>6B4I-E nrPDB
Length = 430
Score = 30.6 bits (67), Expect = 0.96, Method: Composition-based stats.
Identities = 20/140 (14%), Positives = 53/140 (37%), Gaps = 8/140 (5%)
Query: 38 HLLLYGPNGTGKKTR-CMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEI 96
+L+ +GTGK +A+L + Y + + + + ++ ++ E+
Sbjct: 84 NLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPEL 143
Query: 97 T-PSDMGNNDRIVIQELLKEVAQMEQVDFQD----SKDGLAHRYKCVIINEANSL--TKD 149
+ N Q++ +++ D K + K +++EA+ + T+
Sbjct: 144 KLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQG 203
Query: 150 AQAALRRTMEKYSKNIRLIM 169
Q R +N ++++
Sbjct: 204 HQDQSIRIQRMLPRNCQMLL 223
>1G29-1 nrPDB
Length = 372
Score = 30.6 bits (67), Expect = 1.0, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 50/135 (37%), Gaps = 18/135 (13%)
Query: 23 TNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALL-------ESIFGPGVYRLKIDVRQF 75
++ +S + +D ++L GP+G GK T + I+ + F
Sbjct: 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIF 75
Query: 76 VTASNRKLELNVVSSPYHLEIT-------PSDMGNNDRIVIQELLKEVAQ----MEQVDF 124
V +R + + S + +T P + R I + ++EVA+ E ++
Sbjct: 76 VPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNR 135
Query: 125 QDSKDGLAHRYKCVI 139
+ + R + +
Sbjct: 136 KPRELSGGQRQRVAL 150
>2V1U-A nrPDB
Length = 387
Score = 30.6 bits (67), Expect = 1.1, Method: Composition-based stats.
Identities = 37/255 (14%), Positives = 81/255 (31%), Gaps = 30/255 (11%)
Query: 4 WV--DKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIF 61
WV Y P L + + + + + LLYG GTGK +L +
Sbjct: 10 WVLLPDYVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLE 69
Query: 62 GPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ 121
+ +V A +R+ V S + + ++ ++ E
Sbjct: 70 ARASSLGVLVKPIYVNARHRETPYRVAS------------AIAEAVGVRVPFTGLSVGEV 117
Query: 122 VDFQDSKDGLAHRYKCVIINEANSLTK--DAQAALRRTM----EKYSKNIRLIMVCDSMS 175
+ + ++++E + L K Q L R E + ++ +
Sbjct: 118 YERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177
Query: 176 PIIAPIKSRC------LLIRCPAPSDSEISTILSDVVTNE-RIQLETKDIL---KRIAQA 225
+ ++ R + + P + ++ IL + D++ +A
Sbjct: 178 GFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAR 237
Query: 226 SNGNLRVSLLMLESM 240
+G+ R +L +L
Sbjct: 238 EHGDARRALDLLRVA 252
>3FMO-B nrPDB
Length = 300
Score = 30.6 bits (67), Expect = 1.1, Method: Composition-based stats.
Identities = 20/140 (14%), Positives = 53/140 (37%), Gaps = 8/140 (5%)
Query: 38 HLLLYGPNGTGKKTR-CMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEI 96
+L+ +GTGK +A+L + Y + + + + ++ ++ E+
Sbjct: 133 NLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPEL 192
Query: 97 T-PSDMGNNDRIVIQELLKEVAQMEQVDFQD----SKDGLAHRYKCVIINEANSL--TKD 149
+ N Q++ +++ D K + K +++EA+ + T+
Sbjct: 193 KLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQG 252
Query: 150 AQAALRRTMEKYSKNIRLIM 169
Q R +N ++++
Sbjct: 253 HQDQSIRIQRMLPRNCQMLL 272
>2FWR-A nrPDB
Length = 472
Score = 30.2 bits (66), Expect = 1.3, Method: Composition-based stats.
Identities = 19/107 (17%), Positives = 36/107 (33%), Gaps = 14/107 (13%)
Query: 44 PNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGN 103
P G+GK MA + + P + I V A K L + Y E +
Sbjct: 116 PTGSGKTHVAMAAINELSTPTL----IVVPTLALAEQWKERLGIFGEEYVGEF-SGRIKE 170
Query: 104 NDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDA 150
+ + E++ +R+ +I +E + L ++
Sbjct: 171 LKPLTVSTYDSAYVNAEKL---------GNRFMLLIFDEVHHLPAES 208
>4B3F-X nrPDB
Length = 646
Score = 30.2 bits (66), Expect = 1.3, Method: Composition-based stats.
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 40 LLYGPNGTGKKTRCM 54
+++GP GTGK T +
Sbjct: 209 IIHGPPGTGKTTTVV 223
>1IY1-A nrPDB
Length = 254
Score = 30.2 bits (66), Expect = 1.4, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 22 LTNFLK---SLSDQPRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVT 77
+ FLK + +P +LL GP G GK A+ P + D +
Sbjct: 31 IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 90
Query: 78 AS 79
Sbjct: 91 GV 92
>6EJ5-A nrPDB
Length = 637
Score = 30.2 bits (66), Expect = 1.4, Method: Composition-based stats.
Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 11/127 (8%)
Query: 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEI 96
P L+ GP GTGK ++ + G V ++ +L L++
Sbjct: 209 PLSLIQGPPGTGKTVTSATIVYHLARQG----NGPVLVCAPSNIAVDQLTEKIHQTGLKV 264
Query: 97 TPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQ---AA 153
+ R I + +A Q+ DS L + + +E L+ + A
Sbjct: 265 VRLCAKS--REAIDSPVSFLALHNQIRNMDSMPELQKLQQ--LKDETGELSSADEKRYRA 320
Query: 154 LRRTMEK 160
L+RT E+
Sbjct: 321 LKRTAER 327
>5WWP-B nrPDB
Length = 600
Score = 30.2 bits (66), Expect = 1.4, Method: Composition-based stats.
Identities = 19/133 (14%), Positives = 43/133 (32%), Gaps = 7/133 (5%)
Query: 16 LSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQF 75
++ EE + + + + ++ + GP GTGK + L I+ P +
Sbjct: 258 ITVPEEFASHVANF-QKSGYSKYVTVQGPPGTGKSHFAIGLA--IYYPTARVVYTACSHA 314
Query: 76 VTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRY 135
+ + ++ I P+ R+ + K Q F
Sbjct: 315 AVDALCEKAFKYLNIAKCSRIIPAK----ARVECYDRFKVNETNSQYLFSTINALPETSA 370
Query: 136 KCVIINEANSLTK 148
++++E + T
Sbjct: 371 DILVVDEVSMCTN 383
>2WJV-A nrPDB
Length = 800
Score = 30.2 bits (66), Expect = 1.4, Method: Composition-based stats.
Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 11/127 (8%)
Query: 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEI 96
P L+ GP GTGK ++ + G V ++ +L L++
Sbjct: 372 PLSLIQGPPGTGKTVTSATIVYHLARQG----NGPVLVCAPSNIAVDQLTEKIHQTGLKV 427
Query: 97 TPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQ---AA 153
+ R I + +A Q+ DS L + + +E L+ + A
Sbjct: 428 VRLCAKS--REAIDSPVSFLALHNQIRNMDSMPELQKLQQ--LKDETGELSSADEKRYRA 483
Query: 154 LRRTMEK 160
L+RT E+
Sbjct: 484 LKRTAER 490
>5A9K-A nrPDB
Length = 305
Score = 30.2 bits (66), Expect = 1.5, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 17 SHNEELTNFLKSLSDQPRDLPH---LLLYGPNGTGKKTRCMALLESIFG 62
N EL F+ +L + +P L GP TGK C +L+ + G
Sbjct: 104 YQNIELITFINALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGG 152
>2GXA-A nrPDB
Length = 274
Score = 30.2 bits (66), Expect = 1.5, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 17 SHNEELTNFLKSLSDQPRDLPH---LLLYGPNGTGKKTRCMALLESIFG 62
N EL F+ +L + +P L GP TGK C +L+ + G
Sbjct: 101 YQNIELITFINALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGG 149
>1Y63-A nrPDB
Length = 184
Score = 30.2 bits (66), Expect = 1.5, Method: Composition-based stats.
Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 9/110 (8%)
Query: 31 DQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSS 90
+QP+ + ++L+ G GTGK + + + G + V++ + EL
Sbjct: 6 EQPKGI-NILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTEL----- 59
Query: 91 PYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVII 140
H+ + D + E + VD+ S+ + V++
Sbjct: 60 DTHIIEEKDEDRLLDFM---EPIMVSRGNHVVDYHSSELFPERWFHMVVV 106
>5BQ5-A nrPDB
Length = 189
Score = 30.2 bits (66), Expect = 1.5, Method: Composition-based stats.
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
Query: 28 SLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLE 84
S D+ ++ L GP G GK +++ G I V R +
Sbjct: 34 SFIDRKENI---LFLGPPGIGKTHLAISIGMEAIARGYKTYFITAHDLVNQLRRADQ 87
>3JCP-I nrPDB
Length = 437
Score = 30.2 bits (66), Expect = 1.5, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 12/67 (17%)
Query: 5 VDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHL------------LLYGPNGTGKKTR 52
+DK +S + + E +K + P P L +LYG GTGK
Sbjct: 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLL 232
Query: 53 CMALLES 59
A+
Sbjct: 233 AKAVANQ 239
>2BDT-A nrPDB
Length = 189
Score = 30.2 bits (66), Expect = 1.6, Method: Composition-based stats.
Identities = 26/130 (20%), Positives = 44/130 (33%), Gaps = 7/130 (5%)
Query: 40 LLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS 99
++ GP G GK T C L + I V E + + + IT
Sbjct: 6 IITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDL 65
Query: 100 DM----GNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALR 155
+ ND ++ + A+ Q D + R+ + N L +D ALR
Sbjct: 66 TVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRD---ALR 122
Query: 156 RTMEKYSKNI 165
+ E+ +
Sbjct: 123 KKDEQMGERC 132
>2DHR-A nrPDB
Length = 499
Score = 29.8 bits (65), Expect = 1.6, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 22 LTNFLK---SLSDQPRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVT 77
+ FLK + +P +LL GP G GK A+ P + D +
Sbjct: 46 IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 105
Query: 78 AS 79
Sbjct: 106 GV 107
>6GEJ-T nrPDB
Length = 463
Score = 29.8 bits (65), Expect = 1.8, Method: Composition-based stats.
Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Query: 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITP 98
+LL G TGK +A+ + + GP V + + + +K E + + + +
Sbjct: 75 ILLAGGPSTGKTALALAISQEL-GPKVPFCPLVGSELYSVEVKKTETLMENFRRAIGLRI 133
Query: 99 SDMGNNDRIVIQELLKEVAQM 119
+ + EL E A+
Sbjct: 134 KETKEVYEGEVTELTPEDAEN 154
>6EF1-I nrPDB
Length = 271
Score = 29.8 bits (65), Expect = 1.8, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 12/67 (17%)
Query: 5 VDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHL------------LLYGPNGTGKKTR 52
+DK +S + + E +K + P P L +LYG GTGK
Sbjct: 7 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLL 66
Query: 53 CMALLES 59
A+
Sbjct: 67 AKAVANQ 73
>6FVU-I nrPDB
Length = 384
Score = 29.8 bits (65), Expect = 2.0, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 12/67 (17%)
Query: 5 VDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHL------------LLYGPNGTGKKTR 52
+DK +S + + E +K + P P L +LYG GTGK
Sbjct: 120 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLL 179
Query: 53 CMALLES 59
A+
Sbjct: 180 AKAVANQ 186
>5JZV-A nrPDB
Length = 206
Score = 29.8 bits (65), Expect = 2.1, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 36 LPHLLLYGPNGTGKKTRCMALL 57
LP++LL G G GK T L
Sbjct: 37 LPNILLTGTPGVGKTTLGKELA 58
>3NXS-A nrPDB
Length = 329
Score = 29.8 bits (65), Expect = 2.1, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 18 HNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMAL 56
H E+ L L + H+ + G G GK T AL
Sbjct: 39 HREQAQQLLLDLMPEAGSAMHVGITGVPGVGKSTTIEAL 77
>2OG2-A nrPDB
Length = 359
Score = 29.4 bits (64), Expect = 2.2, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITP 98
+++ G NG GK T L + G L F A++ +LE+ + + +
Sbjct: 160 IMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEI-VVA 218
Query: 99 SDMGNNDRIVIQELLK 114
V+ + +K
Sbjct: 219 EGDKAKAATVLSKAVK 234
>4Z0H-O nrPDB
Length = 334
Score = 29.4 bits (64), Expect = 2.3, Method: Composition-based stats.
Identities = 36/263 (13%), Positives = 75/263 (28%), Gaps = 49/263 (18%)
Query: 18 HNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLES----IFGPGVYRLKIDVR 73
+ + +D+ + HL G KK A + + G + K D+
Sbjct: 91 GADYVVESTGVFTDKDKAAAHL-----KGGAKKVVISAPSKDAPMFVVGVNEHEYKSDLD 145
Query: 74 QFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAH 133
AS + L +D ++ + A + VD KD
Sbjct: 146 IVSNAS------CTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGG 199
Query: 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSRCLLIRCPAP 193
R + + + ++ ++ + + + P
Sbjct: 200 R-------------AASFNII-------PSSTG---AAKAVGKVLPALNGKLTGMSFRVP 236
Query: 194 SDS----EISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALNNELALK 249
+ +++ L T + I+ K I + S G L+ L E ++ +
Sbjct: 237 TVDVSVVDLTVRLEKAATYDEIK-------KAIKEESEGKLKGILGYTEDDVVSTDFVGD 289
Query: 250 SSSPIIKPDWIIVIHKLTRKIVK 272
+ S I I + K+V
Sbjct: 290 NRSSIFDAKAGIALSDKFVKLVS 312
>5LL6-h nrPDB
Length = 608
Score = 29.4 bits (64), Expect = 2.3, Method: Composition-based stats.
Identities = 27/151 (17%), Positives = 59/151 (39%), Gaps = 17/151 (11%)
Query: 39 LLLYGPNGTGKKTRCMALLESIF---GPGVYRLKIDVRQF-----VTASNRKLELNVVSS 90
L++ G NGTGK T L ++ G + +L + ++ + R+L +
Sbjct: 381 LVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRG 440
Query: 91 PYHLEITPSDMGNNDRI--VIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK 148
+ +D+ RI +I + ++ ++ E + L +I+E ++
Sbjct: 441 QFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGE-LQRVAIVLALGIPADIYLIDEPSAYLD 499
Query: 149 DAQA-----ALRRTMEKYSKNIRLIMVCDSM 174
Q +RR + ++K I+ D +
Sbjct: 500 SEQRIICSKVIRRFI-LHNKKTAFIVEHDFI 529
>5L3R-B nrPDB
Length = 293
Score = 29.4 bits (64), Expect = 2.4, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITP 98
+++ G NG GK T L + G L F A++ +LE+ + + +
Sbjct: 94 IMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEI-VVA 152
Query: 99 SDMGNNDRIVIQELLK 114
V+ + +K
Sbjct: 153 EGDKAKAATVLSKAVK 168
>3HTX-A nrPDB
Length = 950
Score = 29.4 bits (64), Expect = 2.4, Method: Composition-based stats.
Identities = 28/147 (19%), Positives = 53/147 (36%), Gaps = 11/147 (7%)
Query: 81 RKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVII 140
L+L S ++ D + + + L Q + + +++D + R K +
Sbjct: 61 CHLQLPEFSVVSNVFKKKKDSEQSAAELALDKLGIRPQNDDLTVDEARDEIVGRIKYIFS 120
Query: 141 NEA----NSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSRCLLIRCPAPSDS 196
+E + L +AALRR E+ ++ I SRC +I SD
Sbjct: 121 DEFLSAEHPLGAHLRAALRRDGERCGSVPVSVIATVDAK-----INSRCKIINPSVESDP 175
Query: 197 --EISTILSDVVTNERIQLETKDILKR 221
IS ++ + + L+R
Sbjct: 176 FLAISYVMKAAAKLADYIVASPHGLRR 202
>3IIK-A nrPDB
Length = 180
Score = 29.4 bits (64), Expect = 2.5, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 36 LPHLLLYGPNGTGKKTRCMALL 57
LP++LL G G GK T L
Sbjct: 11 LPNILLTGTPGVGKTTLGKELA 32
>5ZFQ-A nrPDB
Length = 390
Score = 29.4 bits (64), Expect = 2.5, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 25 FLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60
+K L+++PR L +L+ GP G+GK T A+++ I
Sbjct: 140 VVKELAEKPRGL--ILVTGPTGSGKSTTLAAIIDKI 173
>2D62-A nrPDB
Length = 375
Score = 29.4 bits (64), Expect = 2.6, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 22 LTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALL 57
+K LS + +D L+L GP+G GK T +
Sbjct: 18 DVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRMIA 53
>4F4J-A nrPDB
Length = 202
Score = 29.0 bits (63), Expect = 2.9, Method: Composition-based stats.
Identities = 14/82 (17%), Positives = 27/82 (32%)
Query: 20 EELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS 79
+ ++L Q +++ GP+GTGK T L + + R
Sbjct: 1 DYDIPTTENLYFQGSMSRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVPSTTRTPRAGE 60
Query: 80 NRKLELNVVSSPYHLEITPSDM 101
+ N VS + ++
Sbjct: 61 VNGKDYNFVSVDEFKSMIKNNE 82
>6QUZ-B nrPDB
Length = 599
Score = 29.0 bits (63), Expect = 3.0, Method: Composition-based stats.
Identities = 27/154 (17%), Positives = 61/154 (39%), Gaps = 6/154 (3%)
Query: 20 EELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLE--SIFGPGVYRLKIDVRQFVT 77
++ LK ++ + + L GP G+GK T L+ + + ID+R+
Sbjct: 365 DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKR 424
Query: 78 ASNR-KLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYK 136
+S R + + + + ++ + E +KE A++ D L Y+
Sbjct: 425 SSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDH--FIKHLPEGYE 482
Query: 137 CVIINEANSLTKDAQAALRRTMEKYSKNIRLIMV 170
V+ + L++ Q L + N +++++
Sbjct: 483 TVLTDNGEDLSQG-QRQLLAITRAFLANPKILIL 515
>3SR0-A nrPDB
Length = 206
Score = 29.0 bits (63), Expect = 3.4, Method: Composition-based stats.
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 39 LLLYGPNGTGKKTRCMALLES 59
L+ GP G GK T+ L +
Sbjct: 3 LVFLGPPGAGKGTQAKRLAKE 23
>6FA9-A nrPDB
Length = 655
Score = 28.7 bits (62), Expect = 3.7, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 62/163 (38%), Gaps = 4/163 (2%)
Query: 11 KSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI-FGPGVYRLK 69
+++ + + + + + D ++ L+L G G+GK T+ L + G ++
Sbjct: 22 RTIQEVRKSLPVYAYRDAFLDAVKEYQVLILVGETGSGKTTQIPQYLHEAGYTKGNRKIA 81
Query: 70 IDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKD 129
+ V A + + + D + +LK + + +
Sbjct: 82 CTQPRRVAAMSVAARVADEMGVRLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREMVTSP 141
Query: 130 GLAHRYKCVIINEANSLTKDAQ--AALRRTMEKYSKNIRLIMV 170
LA Y C++I+EA+ T AL + + + +RLI+
Sbjct: 142 DLAD-YSCIMIDEAHERTVHTDILLALIKDLTRARPELRLIIS 183
>6CY1-A nrPDB
Length = 329
Score = 28.7 bits (62), Expect = 3.7, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 2/98 (2%)
Query: 30 SDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLEL--NV 87
D+ + +++ G NG GK T L G+ + F A+ +L +
Sbjct: 117 IDKTKKPYVIMVVGVNGVGKTTTIGKLAHQFKSEGLKVVLGAADTFRAAAVDQLVIWSER 176
Query: 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQ 125
V P + SD + +Q + + A + +D
Sbjct: 177 VGVPIVKQAMGSDPASVAFDTVQSAVSQDADVVIIDTA 214
>4Q7L-A nrPDB
Length = 256
Score = 28.7 bits (62), Expect = 3.9, Method: Composition-based stats.
Identities = 34/205 (16%), Positives = 79/205 (38%), Gaps = 8/205 (3%)
Query: 20 EELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLE--SIFGPGVYRLKIDVRQFVT 77
++ LK ++ + + L GP G+GK T L+ + + ID+R+
Sbjct: 15 DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKR 74
Query: 78 ASNR-KLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYK 136
+S R + + + + ++ + E +KE A++ D L Y+
Sbjct: 75 SSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDH--FIKHLPEGYE 132
Query: 137 CVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI-IAPIKS-RCLLIRCPAPS 194
V+ + L++ Q L + N +++++ ++ S + KS + + +
Sbjct: 133 TVLTDNGEDLSQG-QRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGK 191
Query: 195 DSEISTILSDVVTNERIQLETKDIL 219
S I + + N + + +D
Sbjct: 192 TSIIIAHRLNTIKNADLIIVLRDGE 216
>2IUU-A nrPDB
Length = 491
Score = 28.7 bits (62), Expect = 4.1, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 27 KSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELN 86
+ + +PHLL+ G G+GK A+L SI +++ + + + LEL+
Sbjct: 205 RPIITDLAKMPHLLVAGTTGSGKSVGVNAMLLSI----LFKSTPSEARLIMIDPKMLELS 260
Query: 87 VVSSPYHLEITPSDMGNNDRIVIQELLKEVAQ 118
+ HL ++ + E+ +
Sbjct: 261 IYEGIPHLLCPVVTDMKEAANALRWSVAEMER 292
>2IUT-A nrPDB
Length = 574
Score = 28.7 bits (62), Expect = 4.3, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 27 KSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELN 86
+ + +PHLL+ G G+GK A+L SI +++ + + + LEL+
Sbjct: 205 RPIITDLAKMPHLLVAGTTGSGKSVGVNAMLLSI----LFKSTPSEARLIMIDPKMLELS 260
Query: 87 VVSSPYHLEITPSDMGNNDRIVIQELLKEVAQ 118
+ HL ++ + E+ +
Sbjct: 261 IYEGIPHLLCPVVTDMKEAANALRWSVAEMER 292
>4Z2C-C nrPDB
Length = 269
Score = 28.3 bits (61), Expect = 4.9, Method: Composition-based stats.
Identities = 35/222 (15%), Positives = 75/222 (33%), Gaps = 30/222 (13%)
Query: 71 DVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDG 130
D S R E + + + D+I+ E ++ + F D
Sbjct: 56 DSAGGSAKSGRNREFQAILPIRGKILNVEK-ASMDKILANEEIRSLFTAMGTGFGAEFDV 114
Query: 131 LAHRY-KCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSRCLLIR 189
RY K V++ +A+ + L + +Y K I+ + PI
Sbjct: 115 SKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKP---ILEAGYVYIAQPPI-------- 163
Query: 190 CPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALNNELALK 249
SEI + E I+L+ + +A+ S G + ++ + + ++ L
Sbjct: 164 YGVKVGSEIKEYIQPGADQE-IKLQ-----EALARYSEGRTKPTIQRYKGLGEMDDHQLW 217
Query: 250 SSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLA 291
++ + P+ +++ SV+ E + L+
Sbjct: 218 ETT--MDPEH---------RLMARVSVDDAAEADKIFDMLMG 248
>4YMS-J nrPDB
Length = 240
Score = 28.3 bits (61), Expect = 5.1, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 13 LNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKT--RCMALLES 59
+N + N LK ++ + +++ GP+G+GK T RC+ LLE
Sbjct: 4 VNDVYKNFGSLEVLKGVTLKVNKGEVVVIIGPSGSGKSTLLRCINLLEE 52
>1ODF-A nrPDB
Length = 290
Score = 28.3 bits (61), Expect = 5.3, Method: Composition-based stats.
Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 8/116 (6%)
Query: 20 EELTNFLKSLSDQ----PRDLP-HLLLYGPNGTGKKTRCMALLESI---FGPGVYRLKID 71
+ FL + P + GP G+GK + + + +G
Sbjct: 10 DYTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYAS 69
Query: 72 VRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDS 127
+ F +L+LN L G +D ++QE+L + + QD+
Sbjct: 70 IDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDT 125
>3CIA-A nrPDB
Length = 605
Score = 28.3 bits (61), Expect = 5.4, Method: Composition-based stats.
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 290 LAHCIPANIILKELTFSLLDVETLNTTNKSSIIEYSSVFD 329
LAH N++ E L E + ++ I+E D
Sbjct: 302 LAHSWSGNLVTNESWRDLWLNEGFTSYVENRIMEAVFGTD 341
>4E22-A nrPDB
Length = 252
Score = 28.3 bits (61), Expect = 5.5, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 37 PHLLLYGPNGTGKKTRCMALLESI 60
P + + GP+G GK T C AL ES+
Sbjct: 28 PVITVDGPSGAGKGTLCKALAESL 51
>3EC2-A nrPDB
Length = 180
Score = 28.3 bits (61), Expect = 5.6, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 5 VDKYRPKSLNALSHNEELTNFLKSLSDQ--PRDLPHLLLYGPNGTGKKTRCMALLESIFG 62
+D Y PK+++ ++ P + L G G GK +A L++I+
Sbjct: 9 LDTYHPKNVS----QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYE 64
Query: 63 PGVYR 67
R
Sbjct: 65 KKGIR 69
>4L16-A nrPDB
Length = 334
Score = 28.3 bits (61), Expect = 5.9, Method: Composition-based stats.
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 39 LLLYGPNGTGKKTRCMALLES 59
+LL+GP GTGK +
Sbjct: 92 VLLFGPPGTGKTMIGRCVASQ 112
>4YER-A nrPDB
Length = 328
Score = 28.3 bits (61), Expect = 6.0, Method: Composition-based stats.
Identities = 42/282 (14%), Positives = 89/282 (31%), Gaps = 44/282 (15%)
Query: 41 LYGPNGTGKKTRCMALL--------------ESIFG-PGVYRLKIDVRQFVTASNRKLEL 85
GPNG GK T L + P R KI + + +R+L
Sbjct: 36 FLGPNGAGKTTTIHMLTTLLKPTSGKAWVAGHDVLKEPREVRRKIGIVFQDQSLDRELTA 95
Query: 86 NVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKC-------- 137
+ RI+ E+ + + + G+A R +
Sbjct: 96 YENMYIHGKIYGYGGEKLKKRILELLEFVELLEFKDKPVKTFSGGMARRLEIARSLIHEP 155
Query: 138 --VIINEAN-SLTKDAQAALRRTMEKYSK--NIRLIMVCDSMSPIIAPIKSRCL------ 186
+ ++E L +A + + K K N+ + + M + R
Sbjct: 156 EVLFLDEPTIGLDPHTRAHMWEYISKMKKEHNMTIFLTTHYMDE-AEQLADRVAIIDHGK 214
Query: 187 LIRCPAPSD--SEISTILSDVVTNERIQLETKDILKRIAQASNGNLR-------VSLLML 237
+I P++ + + V +E ++ D ++ + +G L ++ +
Sbjct: 215 IIALGTPTELKRMVGKEIIYVRFSEAVECLEGDFIESCRKLPDGRLELNVEDSGRAIPKI 274
Query: 238 ESMALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSL 279
+A L ++ + + +H R++ +E NS
Sbjct: 275 FELAQQKGLKIEEITYHKPTLNDVFLHLTGRELREEGPENSF 316
>2QZ4-A nrPDB
Length = 262
Score = 27.9 bits (60), Expect = 6.5, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 21 ELTNFLKS---LSDQPRDLPH-LLLYGPNGTGKKTRCMALLES 59
E ++LKS +P LL GP G GK A+
Sbjct: 20 EFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE 62
>4Z8X-A nrPDB
Length = 497
Score = 27.9 bits (60), Expect = 6.8, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS 79
+LLYG G GK A+ P + D +
Sbjct: 54 VLLYGEPGVGKTLLAKAIAGEAHVPFISVSGSDFVEMFVGV 94
>4PHT-A nrPDB
Length = 500
Score = 27.9 bits (60), Expect = 6.8, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 24 NFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60
+ + L +P + +L+ GP G+GK T A L+ +
Sbjct: 244 DNFRHLISRPHGI--ILVTGPTGSGKSTTLYAGLQEL 278
>3R8C-A nrPDB
Length = 228
Score = 27.9 bits (60), Expect = 7.1, Method: Composition-based stats.
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 43 GPNGTGKKTRCMALLESI 60
GP+GTGK + L +
Sbjct: 11 GPSGTGKSSVAKELARQL 28
>2XZL-A nrPDB
Length = 802
Score = 27.9 bits (60), Expect = 7.9, Method: Composition-based stats.
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 37 PHLLLYGPNGTGKKTRCMALLESI 60
P L+ GP GTGK ++ +
Sbjct: 376 PLSLIQGPPGTGKTVTSATIVYHL 399
>5IJN-C nrPDB
Length = 819
Score = 27.5 bits (59), Expect = 8.1, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 6/98 (6%)
Query: 237 LESMALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPA 296
L +A N + L+ + ++ P +V + KER N + A I A
Sbjct: 628 LYDLAKNADKVLELMNKLLSP---VVPQISAPQSNKERLKNMALSIAE---RYRAQGISA 681
Query: 297 NIILKELTFSLLDVETLNTTNKSSIIEYSSVFDERLSL 334
N + + LLD+ T S I+ + ERL L
Sbjct: 682 NKFVDSTFYLLLDLITFFDEYHSGHIDRAFDIIERLKL 719
>2F03-A nrPDB
Length = 269
Score = 27.5 bits (59), Expect = 8.6, Method: Composition-based stats.
Identities = 18/149 (12%), Positives = 54/149 (36%), Gaps = 7/149 (4%)
Query: 135 YKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIM--VCDSMSPIIAPIKSRCLLIRCPA 192
Y+ + ++E S+ K + + +++YSK + I S + +
Sbjct: 5 YRELSLDELESVEKQTLRTIVQALQQYSKEAKSIFETTAADSSGEVIVLAEDITQYALEV 64
Query: 193 PSDSEISTILSDVVTNERIQ-LETKDIL--KRIAQASNGNLRVSLLMLE--SMALNNELA 247
I+ + + +R++ L + L + + + + + L+ + ++ E
Sbjct: 65 AETYPINRRFAGFIDYKRVRWLPSPHGLLPQVLLVDAKASTEKNRDTLQRSQLPMDAEFR 124
Query: 248 LKSSSPIIKPDWIIVIHKLTRKIVKERSV 276
SS ++ + ++ H + +
Sbjct: 125 NTSSGEVVTMEAGVIPHLMLQSANDGVLP 153
>2IHY-A nrPDB
Length = 279
Score = 27.5 bits (59), Expect = 9.4, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 13 LNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKT 51
L+ + ++ LK +S Q +LYG NG GK T
Sbjct: 24 LDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTT 62
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.313 0.119 0.285
Lambda K H
0.267 0.0362 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,950,367
Number of Sequences: 36641
Number of extensions: 330460
Number of successful extensions: 1818
Number of sequences better than 10.0: 207
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 1560
Number of HSP's gapped (non-prelim): 285
length of query: 354
length of database: 10,336,785
effective HSP length: 98
effective length of query: 256
effective length of database: 6,745,967
effective search space: 1726967552
effective search space used: 1726967552
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.5 bits)