BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= P37382
(297 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
3H0G-C nrPDB 616 e-177
3HOY-C nrPDB 320 5e-88
3J0K-C nrPDB 317 3e-87
5X4Z-C nrPDB 301 2e-82
5IYA-C nrPDB 221 2e-58
5LMX-C nrPDB 99 2e-21
6F44-C nrPDB 99 3e-21
4QIW-D nrPDB 82 3e-16
2WB1-D nrPDB 72 2e-13
2PMZ-D nrPDB 71 6e-13
1IW7-A nrPDB 35 0.030
1HQM-A nrPDB 33 0.16
3JWJ-A nrPDB 29 2.2
5LJ3-O nrPDB 28 3.4
6B44-C nrPDB 28 4.2
5GMK-c nrPDB 27 7.3
2F6U-A nrPDB 27 7.5
5WQ8-A nrPDB 27 8.2
>3H0G-C nrPDB
Length = 297
Score = 616 bits (1588), Expect = e-177, Method: Compositional matrix adjust.
Identities = 297/297 (100%), Positives = 297/297 (100%)
Query: 1 MDSETHITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDE 60
MDSETHITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDE
Sbjct: 1 MDSETHITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDE 60
Query: 61 FLAHRLGMIPLDSSNIDEPPPVGLEYTRNCDCDQYCPKCSVELFLNAKCTGEGTMEIYAR 120
FLAHRLGMIPLDSSNIDEPPPVGLEYTRNCDCDQYCPKCSVELFLNAKCTGEGTMEIYAR
Sbjct: 61 FLAHRLGMIPLDSSNIDEPPPVGLEYTRNCDCDQYCPKCSVELFLNAKCTGEGTMEIYAR 120
Query: 121 DLVVSSNSSLGHPILADPKSRGPLICKLRKEQEISLRCIAKKGIAKEHAKWSPTSAVAFE 180
DLVVSSNSSLGHPILADPKSRGPLICKLRKEQEISLRCIAKKGIAKEHAKWSPTSAVAFE
Sbjct: 121 DLVVSSNSSLGHPILADPKSRGPLICKLRKEQEISLRCIAKKGIAKEHAKWSPTSAVAFE 180
Query: 181 YDPWNKLQHTDYWFENDADAEWPKSKNADWEEPPREGEPFNFQEEPRRFYMDVESVGSIP 240
YDPWNKLQHTDYWFENDADAEWPKSKNADWEEPPREGEPFNFQEEPRRFYMDVESVGSIP
Sbjct: 181 YDPWNKLQHTDYWFENDADAEWPKSKNADWEEPPREGEPFNFQEEPRRFYMDVESVGSIP 240
Query: 241 PNEIMVQGLRILQEKLAVLVRDLDEEQPTQLSANELNMEENAEMNWSPYQNGEENTW 297
PNEIMVQGLRILQEKLAVLVRDLDEEQPTQLSANELNMEENAEMNWSPYQNGEENTW
Sbjct: 241 PNEIMVQGLRILQEKLAVLVRDLDEEQPTQLSANELNMEENAEMNWSPYQNGEENTW 297
>3HOY-C nrPDB
Length = 347
Score = 320 bits (820), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 147/276 (53%), Positives = 207/276 (75%), Gaps = 13/276 (4%)
Query: 6 HITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHR 65
+ IR SK++VDF+L+N LA+ANSLRRV++AEIPT+AID VE+ NT+V+ DEF+AHR
Sbjct: 36 QVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHR 95
Query: 66 LGMIPLDSSNIDEPPPVGLEYTRNCDCDQYCPKCSVELFLNAKCTGEGTMEIYARDLVVS 125
LG+IPL S +I++ LEY+R+C C+ +C KCSV L L A E T +Y++DLV+
Sbjct: 96 LGLIPLQSMDIEQ-----LEYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDLVIV 150
Query: 126 SN---SSLGHPILADPKSRGPLICKLRKEQEISLRCIAKKGIAKEHAKWSPTSAVAFEYD 182
SN ++GHPI+ D + G LICKLRK QE+ L C+AKKGIAKEHAKW P +A+ FEYD
Sbjct: 151 SNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFEYD 210
Query: 183 PWNKLQHTDYWFENDADAEWPKSKNADWEEPPREGEPFNFQEEPRRFYMDVESVGSIPPN 242
PWNKL+HTDYW+E D+ EWP+SKN ++E+PP EG+PF+++ + FYM+VESVGSIP +
Sbjct: 211 PWNKLKHTDYWYEQDSAKEWPQSKNCEYEDPPNEGDPFDYKAQADTFYMNVESVGSIPVD 270
Query: 243 EIMVQGLRILQEKLAVLVRDLDEEQPTQLSANELNM 278
+++V+G+ LQ+K+A ++ L TQ+ +++N
Sbjct: 271 QVVVRGIDTLQKKVASILLAL-----TQMDQDKVNF 301
>3J0K-C nrPDB
Length = 268
Score = 317 bits (813), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 144/263 (54%), Positives = 201/263 (76%), Gaps = 8/263 (3%)
Query: 6 HITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHR 65
+ IR SK++VDF+L+N LA+ANSLRRV++AEIPT+AID VE+ NT+V+ DEF+AHR
Sbjct: 7 QVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHR 66
Query: 66 LGMIPLDSSNIDEPPPVGLEYTRNCDCDQYCPKCSVELFLNAKCTGEGTMEIYARDLVVS 125
LG+IPL S +I++ LEY+R+C C+ +C KCSV L L A E T +Y++DLV+
Sbjct: 67 LGLIPLQSMDIEQ-----LEYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDLVIV 121
Query: 126 SN---SSLGHPILADPKSRGPLICKLRKEQEISLRCIAKKGIAKEHAKWSPTSAVAFEYD 182
SN ++GHPI+ D + G LICKLRK QE+ L C+AKKGIAKEHAKW P +A+ FEYD
Sbjct: 122 SNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFEYD 181
Query: 183 PWNKLQHTDYWFENDADAEWPKSKNADWEEPPREGEPFNFQEEPRRFYMDVESVGSIPPN 242
PWNKL+HTDYW+E D+ EWP+SKN ++E+PP EG+PF+++ + FYM+VESVGSIP +
Sbjct: 182 PWNKLKHTDYWYEQDSAKEWPQSKNCEYEDPPNEGDPFDYKAQADTFYMNVESVGSIPVD 241
Query: 243 EIMVQGLRILQEKLAVLVRDLDE 265
+++V+G+ LQ+K+A ++ L +
Sbjct: 242 QVVVRGIDTLQKKVASILLALTQ 264
>5X4Z-C nrPDB
Length = 304
Score = 301 bits (771), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 142/277 (51%), Positives = 203/277 (73%), Gaps = 9/277 (3%)
Query: 1 MDSETHITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDE 60
M E + I N + V+ +L++ +L++ANSLRR +LAE+PT+AIDLVEI +NTSV+ DE
Sbjct: 1 MSKEPKVNIINAQDDEVELMLSDVNLSLANSLRRTMLAEVPTLAIDLVEIKMNTSVLADE 60
Query: 61 FLAHRLGMIPLDSSNIDEPPPVGLEYTRNCDCDQYCPKCSVELFLNAKCTGE-GTMEIYA 119
F++HRLG+IPL S +++E ++Y+R+C C+ YC +CSV L L+A+ GE GT ++Y+
Sbjct: 61 FISHRLGLIPLVSEDVEE-----MKYSRDCTCEDYCDECSVVLELSARHEGEEGTTDVYS 115
Query: 120 RDLVVSS---NSSLGHPILADPKSRGPLICKLRKEQEISLRCIAKKGIAKEHAKWSPTSA 176
L+ S N ++G P+ D +G L+CKLR QE+++RCIAKKGIAKEHAKWSP SA
Sbjct: 116 SSLIKVSGPGNLNVGEPVRRDDYDQGILLCKLRNHQELNIRCIAKKGIAKEHAKWSPCSA 175
Query: 177 VAFEYDPWNKLQHTDYWFENDADAEWPKSKNADWEEPPREGEPFNFQEEPRRFYMDVESV 236
+AFEYDP NKL+HTD+WFE DA EWP SK A WEEPP+ GE F+++ +P RFYM VE+
Sbjct: 176 IAFEYDPHNKLKHTDFWFEVDAKKEWPDSKYATWEEPPKPGEVFDYKAKPNRFYMTVETT 235
Query: 237 GSIPPNEIMVQGLRILQEKLAVLVRDLDEEQPTQLSA 273
GS+ N++ +G++ LQEKLA ++ +L+ +P +A
Sbjct: 236 GSLKANQVFSRGIKTLQEKLANVLFELENSRPANTTA 272
>5IYA-C nrPDB
Length = 275
Score = 221 bits (564), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 119/269 (44%), Positives = 172/269 (63%), Gaps = 20/269 (7%)
Query: 7 ITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRL 66
+ I ++ +V F++ NT LAVANS+RRV +AE+P +AID V+I+ N+SV+ DEF+AHRL
Sbjct: 9 VRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRL 68
Query: 67 GMIPLDSSNIDEPPPVGLEYTRNCDCDQYCPKCSVELFLNAKCTGEGTMEIYARDLVVSS 126
G+IPL S +I + L+Y+R+C C+++CP+CSVE L+ +C + T + +RDL+ S
Sbjct: 69 GLIPLISDDIVD----KLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLI--S 122
Query: 127 NSSLGHPILADPKSRGP---------LICKLRKEQEISLRCIAKKGIAKEHAKWSPTSAV 177
NS P+ + + P LI KLRK QE+ LR AKKG KEHAKW+PT+ V
Sbjct: 123 NSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGV 182
Query: 178 AFEYDPWNKLQHTDYWFENDADAEWPKSKNADWEEPPREGEPFNFQEEPRRFYMDVESVG 237
AFEYDP N L+HT Y EWPKS+ ++ +E + P++ +P RFY +VES G
Sbjct: 183 AFEYDPDNALRHTVY----PKPEEWPKSEYSELDEDESQA-PYDPNGKPERFYYNVESCG 237
Query: 238 SIPPNEIMVQGLRILQEKLAVLVRDLDEE 266
S+ P I++ L L++KL+ L L E
Sbjct: 238 SLRPETIVLSALSGLKKKLSDLQTQLSHE 266
>5LMX-C nrPDB
Length = 380
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 138/294 (46%), Gaps = 48/294 (16%)
Query: 7 ITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRL 66
+ I ++ +F L N ++AN+ RR++++E+P+VA + V NTSV+ DE LAHR+
Sbjct: 42 VNISSLDAREANFDLINIDTSIANAFRRIMISEVPSVAAEYVYFFNNTSVIQDEVLAHRI 101
Query: 67 GMIPLDSSNIDEPPPVGLEYTRNCDCDQYCPKCSVELFLNAKCTG-----EGTME----- 116
G++PL +P + + D +++ + ++ L LN KCT +G+ +
Sbjct: 102 GLVPLKV----DPDMLTWVDSNLPDDEKFTDENTIVLSLNVKCTRNPDAPKGSTDPKELY 157
Query: 117 ----IYARDLVV-----SSNSSLGHPIL-ADPKSRGPLICKLRKEQEISLRCIAKKGIAK 166
+YARDL S + P++ ADP L+ KLR QEISL+ GI
Sbjct: 158 NNAHVYARDLKFEPQGRQSTTFADCPVVPADPDI---LLAKLRPGQEISLKAHCILGIGG 214
Query: 167 EHAKWSPTSAVAFEYDPW-NKLQ----HTDYWFEN---------DADAEWPKSKNADWEE 212
+HAK+SP S ++ P N LQ + F+ D ++ K+A +
Sbjct: 215 DHAKFSPVSTASYRLLPQINILQPIKGESARRFQKCFPPGVIGIDEGSDEAYVKDARKDT 274
Query: 213 PPRE-------GEPFNFQEEPRRFYMDVESVGSIPPNEIMVQGLRILQEKLAVL 259
RE + F +VES G++ P EI + +RIL+ K L
Sbjct: 275 VSREVLRYEEFADKVKLGRVRNHFIFNVESAGAMTPEEIFFKSVRILKNKAEYL 328
>6F44-C nrPDB
Length = 335
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 138/294 (46%), Gaps = 48/294 (16%)
Query: 7 ITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRL 66
+ I ++ +F L N ++AN+ RR++++E+P+VA + V NTSV+ DE LAHR+
Sbjct: 42 VNISSLDAREANFDLINIDTSIANAFRRIMISEVPSVAAEYVYFFNNTSVIQDEVLAHRI 101
Query: 67 GMIPLDSSNIDEPPPVGLEYTRNCDCDQYCPKCSVELFLNAKCTG-----EGTME----- 116
G++PL +P + + D +++ + ++ L LN KCT +G+ +
Sbjct: 102 GLVPLKV----DPDMLTWVDSNLPDDEKFTDENTIVLSLNVKCTRNPDAPKGSTDPKELY 157
Query: 117 ----IYARDLVV-----SSNSSLGHPIL-ADPKSRGPLICKLRKEQEISLRCIAKKGIAK 166
+YARDL S + P++ ADP L+ KLR QEISL+ GI
Sbjct: 158 NNAHVYARDLKFEPQGRQSTTFADCPVVPADPDI---LLAKLRPGQEISLKAHCILGIGG 214
Query: 167 EHAKWSPTSAVAFEYDPW-NKLQ----HTDYWFEN---------DADAEWPKSKNADWEE 212
+HAK+SP S ++ P N LQ + F+ D ++ K+A +
Sbjct: 215 DHAKFSPVSTASYRLLPQINILQPIKGESARRFQKCFPPGVIGIDEGSDEAYVKDARKDT 274
Query: 213 PPRE-------GEPFNFQEEPRRFYMDVESVGSIPPNEIMVQGLRILQEKLAVL 259
RE + F +VES G++ P EI + +RIL+ K L
Sbjct: 275 VSREVLRYEEFADKVKLGRVRNHFIFNVESAGAMTPEEIFFKSVRILKNKAEYL 328
>4QIW-D nrPDB
Length = 259
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 111/275 (40%), Gaps = 74/275 (26%)
Query: 15 NSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRLGMIPLDSS 74
+S+ F+++ + AN+LRR +L+E+PT A+D VE N S + DE +AHRL MIPL +
Sbjct: 12 DSIKFIVSGVDVPFANALRRTILSEVPTFAVDEVEFLENDSALFDEIIAHRLAMIPLTT- 70
Query: 75 NIDEPPPVGLEYTRNCDCDQYCPKCSVELFLNAKCTGEGTMEIYARDLVVSSNSSLGHPI 134
P + D Y S+E EG +Y+ DL SS G
Sbjct: 71 ------PHERFSLDALELDDYTVTLSLE--------AEGPGMVYSGDL----KSSDGDVK 112
Query: 135 LADPKSRGPLICKLRKEQEISLRCIAKKGIAKEHAKWSPTSAVAFEYDPWNKLQHTDYWF 194
A+P I KL + Q ++ A+ G K+HAKW P F Y + H
Sbjct: 113 PANPNIP---IVKLAEGQRLTFNAYARLGRGKDHAKWQP----GFVYYKYLTKIHV---- 161
Query: 195 ENDADAEWPKSKNA-DWEE----PPREGEPF-------------------NFQEE----- 225
SK+ DWEE R G P F+E
Sbjct: 162 ----------SKDVPDWEELKELAERRGLPVEESDEEIVITTIKAFYLPRKFEEHMGKGI 211
Query: 226 -----PRRFYMDVESVGSIPPNEIMVQGLRILQEK 255
P F VE+ G +P EI+ L+IL K
Sbjct: 212 REEIVPGSFVFTVETNGELPVEEIVSIALKILMRK 246
>2WB1-D nrPDB
Length = 265
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 83/171 (48%), Gaps = 19/171 (11%)
Query: 17 VDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRLGMIPLDSSNI 76
+D V L N++RR + +P ++ID V N S + DE LAHRL +IP S
Sbjct: 13 IDLVFEGYPLEFVNAIRRAAMLYVPVMSIDDVYFIENNSPLYDEILAHRLALIPFTSEE- 71
Query: 77 DEPPPVGLEYTR---NC-DCDQYCPKCSVELFLNAKCTGEGTMEIYARDLVVSSNSSLGH 132
L+ R C DC + C KC ++++ A+ E M +Y++D + S + S+
Sbjct: 72 ------ALDTYRWPEECIDCTENCEKCYTKIYIEAEALNEPKM-LYSKD-IKSEDPSI-V 122
Query: 133 PILADPKSRGPLICKLRKEQEISLRCIAKKGIAKEHAKWSPTSAVAFEYDP 183
PI D P++ L Q+ISL + G KEHAK+ P S Y P
Sbjct: 123 PISGDI----PIVL-LGANQKISLEARLRLGYGKEHAKFIPVSLAIVRYYP 168
>2PMZ-D nrPDB
Length = 265
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 117/267 (43%), Gaps = 35/267 (13%)
Query: 17 VDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRLGMIPLDSSNI 76
+D V L N++RR + +P +A+D V N S + DE LAHRL +IP S
Sbjct: 13 IDLVFEGYPLEFVNAIRRASMLYVPIMAVDDVYFIENNSPLYDEILAHRLALIPFMSEE- 71
Query: 77 DEPPPVGLEYTR---NC-DCDQYCPKCSVELFLNAKCTGEGTMEIYARDLVVSSNSSLGH 132
L+ R C +C + C KC ++++ A+ E M IY++D + S
Sbjct: 72 ------ALDTYRWPEECIECTENCEKCYTKIYIEAEAPNEPRM-IYSKD--IKSEDPSVV 122
Query: 133 PILADPKSRGPLICKLRKEQEISLRCIAKKGIAKEHAKWSPTSAVAFEYDP--------- 183
PI D P++ L Q+ISL + G KEHAK+ P S Y P
Sbjct: 123 PISGDI----PIVL-LGTNQKISLEARLRLGYGKEHAKFIPVSLSVVRYYPKVEILANCE 177
Query: 184 --WNKLQHTDYWFENDADAEWPKSKNADWEEPPREGEP---FNFQEEPRRFYMDVESVGS 238
N + ++ + + EE R +F E+ ++ +++ESVGS
Sbjct: 178 KAVNVCPEGVFELKDGKLSVKNELSCTLCEECLRYCNGSIRISFVED--KYILEIESVGS 235
Query: 239 IPPNEIMVQGLRILQEKLAVLVRDLDE 265
+ P I+++ + + K+ L + L E
Sbjct: 236 LKPERILLEAGKSIIRKIEELEKKLVE 262
>1IW7-A nrPDB
Length = 315
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 81/197 (41%), Gaps = 30/197 (15%)
Query: 8 TIRNISKNSVDFVL----TNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLA 63
T+R + +FVL + + N LRR++L+ IP A+ TSV ++ L
Sbjct: 12 TVRTQGREYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAV--------TSVYIEDVL- 62
Query: 64 HRLGMIPLDSSNIDEPPPVGLEYTRNCDCDQYCPKC-SVELFLNAKCTGEGTMEIYARDL 122
H IP ++ E + + P +V L L A EG E+ ARD
Sbjct: 63 HEFSTIPGVKEDVVEI----ILNLKELVVRFLNPSLQTVTLLLKA----EGPKEVKARDF 114
Query: 123 VVSSNSSLGHPIL--ADPKSRGPLICKLRKEQEISLRCIAKKGIAKE------HAKWSPT 174
+ ++ + +P L A + G L ++R ++ + K GI A +SP
Sbjct: 115 LPVADVEIMNPDLHIATLEEGGRLNMEVRVDRGVGYVPAEKHGIKDRINAIPVDAVFSPV 174
Query: 175 SAVAFEYDPWNKLQHTD 191
VAF+ + Q TD
Sbjct: 175 RRVAFQVEDTRLGQRTD 191
>1HQM-A nrPDB
Length = 313
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 25/175 (14%)
Query: 25 SLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRLGMIPLDSSNIDEPPPVGL 84
+ + N LRR++L+ IP A+ TSV ++ L H IP ++ E +
Sbjct: 33 GVTLGNPLRRILLSSIPGTAV--------TSVYIEDVL-HEFSTIPGVKEDVVEI----I 79
Query: 85 EYTRNCDCDQYCPKCSVELFLNAKCTGEGTMEIYARDLVVSSNSSLGHPIL--ADPKSRG 142
+ P+ L L A EG E+ A D S++ + +P L A + G
Sbjct: 80 LNLKELVVRFLDPRWRTTLILRA----EGPKEVRAVDFTPSADVEIMNPDLHIATLEEGG 135
Query: 143 PLICKLRKEQEISLRCIAKKGIAKE------HAKWSPTSAVAFEYDPWNKLQHTD 191
L ++R ++ + + GI A +SP VAF+ + Q TD
Sbjct: 136 KLYMEVRVDRGVGYVPAERHGIKDRINAIPVDAIFSPVRRVAFQVEDTRLGQRTD 190
>3JWJ-A nrPDB
Length = 202
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 177 VAFEYDPWNKLQHTDYWFENDADAEWPKSKNADWEEPPREGEPFNFQEEP 226
V F P KL+H D+ FE W +S+ +W E +N Q +P
Sbjct: 137 VKFANLPAGKLRHKDHRFE------WTRSQFQNWANKITERFAYNVQFQP 180
>5LJ3-O nrPDB
Length = 590
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 228 RFYMDVESVGSIPPNEIMVQGLRILQEKLAVLVRDLDEEQPTQLSANEL 276
R M ++ ++PP E++++ ++ E + L R L + QP + NE+
Sbjct: 492 RTSMKIQFKTAMPPTEVLLESIQSKVESIEQLQRKLQQVQPLEQQNNEM 540
>6B44-C nrPDB
Length = 344
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 172 SPTSAVAFE--YDPWNKLQHTDYWFENDADAEWP 203
S S +AFE DP + L W + DA EWP
Sbjct: 9 STASVLAFERKLDPSDALMSAGAWAQRDASQEWP 42
>5GMK-c nrPDB
Length = 587
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 26/49 (53%)
Query: 228 RFYMDVESVGSIPPNEIMVQGLRILQEKLAVLVRDLDEEQPTQLSANEL 276
R M ++ ++PP E++++ ++ E + L R L QP + NE+
Sbjct: 492 RTSMKIQFKTAMPPTEVLLESIQSKVESIEQLQRKLQHVQPLEQQNNEM 540
>2F6U-A nrPDB
Length = 234
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 182 DPWNKLQHTDYWFE----NDADAEWPKSKNADW 210
DP N + DY F N AD +W K+A W
Sbjct: 70 DPSNVVYDVDYLFVPTVLNSADGDWITGKHAQW 102
>5WQ8-A nrPDB
Length = 650
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 240 PPNEIMVQGLRILQEKLAVLVRDLDEEQPTQLSANELNMEENAEM 284
P N I++ G + +LA ++R +D+ ++ ELN AEM
Sbjct: 136 PANIILITGRAAVVNRLAEIIRRVDQAGDKEIEVVELNNASAAEM 180
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
3H0G-C nrPDB 462 e-131
5X4Z-C nrPDB 378 e-105
3HOY-C nrPDB 376 e-105
3J0K-C nrPDB 368 e-102
5IYA-C nrPDB 321 2e-88
5LMX-C nrPDB 264 3e-71
6F44-C nrPDB 263 6e-71
2PMZ-D nrPDB 261 3e-70
2WB1-D nrPDB 259 1e-69
4QIW-D nrPDB 214 4e-56
Sequences not found previously or not previously below threshold:
1IW7-A nrPDB 54 8e-08
5ZX3-A nrPDB 53 2e-07
6CCE-A nrPDB 49 3e-06
4YLN-A nrPDB 48 7e-06
4MEY-A nrPDB 47 9e-06
1HQM-A nrPDB 47 9e-06
5V2D-A nrPDB 34 0.079
4OVR-A nrPDB 31 0.61
5KXJ-A nrPDB 29 3.3
6EM8-A nrPDB 29 3.5
>3H0G-C nrPDB
Length = 297
Score = 462 bits (1188), Expect = e-131, Method: Composition-based stats.
Identities = 297/297 (100%), Positives = 297/297 (100%)
Query: 1 MDSETHITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDE 60
MDSETHITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDE
Sbjct: 1 MDSETHITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDE 60
Query: 61 FLAHRLGMIPLDSSNIDEPPPVGLEYTRNCDCDQYCPKCSVELFLNAKCTGEGTMEIYAR 120
FLAHRLGMIPLDSSNIDEPPPVGLEYTRNCDCDQYCPKCSVELFLNAKCTGEGTMEIYAR
Sbjct: 61 FLAHRLGMIPLDSSNIDEPPPVGLEYTRNCDCDQYCPKCSVELFLNAKCTGEGTMEIYAR 120
Query: 121 DLVVSSNSSLGHPILADPKSRGPLICKLRKEQEISLRCIAKKGIAKEHAKWSPTSAVAFE 180
DLVVSSNSSLGHPILADPKSRGPLICKLRKEQEISLRCIAKKGIAKEHAKWSPTSAVAFE
Sbjct: 121 DLVVSSNSSLGHPILADPKSRGPLICKLRKEQEISLRCIAKKGIAKEHAKWSPTSAVAFE 180
Query: 181 YDPWNKLQHTDYWFENDADAEWPKSKNADWEEPPREGEPFNFQEEPRRFYMDVESVGSIP 240
YDPWNKLQHTDYWFENDADAEWPKSKNADWEEPPREGEPFNFQEEPRRFYMDVESVGSIP
Sbjct: 181 YDPWNKLQHTDYWFENDADAEWPKSKNADWEEPPREGEPFNFQEEPRRFYMDVESVGSIP 240
Query: 241 PNEIMVQGLRILQEKLAVLVRDLDEEQPTQLSANELNMEENAEMNWSPYQNGEENTW 297
PNEIMVQGLRILQEKLAVLVRDLDEEQPTQLSANELNMEENAEMNWSPYQNGEENTW
Sbjct: 241 PNEIMVQGLRILQEKLAVLVRDLDEEQPTQLSANELNMEENAEMNWSPYQNGEENTW 297
>5X4Z-C nrPDB
Length = 304
Score = 378 bits (970), Expect = e-105, Method: Composition-based stats.
Identities = 142/277 (51%), Positives = 203/277 (73%), Gaps = 9/277 (3%)
Query: 1 MDSETHITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDE 60
M E + I N + V+ +L++ +L++ANSLRR +LAE+PT+AIDLVEI +NTSV+ DE
Sbjct: 1 MSKEPKVNIINAQDDEVELMLSDVNLSLANSLRRTMLAEVPTLAIDLVEIKMNTSVLADE 60
Query: 61 FLAHRLGMIPLDSSNIDEPPPVGLEYTRNCDCDQYCPKCSVELFLNAKCTGE-GTMEIYA 119
F++HRLG+IPL S +++E ++Y+R+C C+ YC +CSV L L+A+ GE GT ++Y+
Sbjct: 61 FISHRLGLIPLVSEDVEE-----MKYSRDCTCEDYCDECSVVLELSARHEGEEGTTDVYS 115
Query: 120 RDLVVSS---NSSLGHPILADPKSRGPLICKLRKEQEISLRCIAKKGIAKEHAKWSPTSA 176
L+ S N ++G P+ D +G L+CKLR QE+++RCIAKKGIAKEHAKWSP SA
Sbjct: 116 SSLIKVSGPGNLNVGEPVRRDDYDQGILLCKLRNHQELNIRCIAKKGIAKEHAKWSPCSA 175
Query: 177 VAFEYDPWNKLQHTDYWFENDADAEWPKSKNADWEEPPREGEPFNFQEEPRRFYMDVESV 236
+AFEYDP NKL+HTD+WFE DA EWP SK A WEEPP+ GE F+++ +P RFYM VE+
Sbjct: 176 IAFEYDPHNKLKHTDFWFEVDAKKEWPDSKYATWEEPPKPGEVFDYKAKPNRFYMTVETT 235
Query: 237 GSIPPNEIMVQGLRILQEKLAVLVRDLDEEQPTQLSA 273
GS+ N++ +G++ LQEKLA ++ +L+ +P +A
Sbjct: 236 GSLKANQVFSRGIKTLQEKLANVLFELENSRPANTTA 272
>3HOY-C nrPDB
Length = 347
Score = 376 bits (966), Expect = e-105, Method: Composition-based stats.
Identities = 147/277 (53%), Positives = 207/277 (74%), Gaps = 13/277 (4%)
Query: 5 THITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAH 64
+ IR SK++VDF+L+N LA+ANSLRRV++AEIPT+AID VE+ NT+V+ DEF+AH
Sbjct: 35 PQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAH 94
Query: 65 RLGMIPLDSSNIDEPPPVGLEYTRNCDCDQYCPKCSVELFLNAKCTGEGTMEIYARDLVV 124
RLG+IPL S +I++ LEY+R+C C+ +C KCSV L L A E T +Y++DLV+
Sbjct: 95 RLGLIPLQSMDIEQ-----LEYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDLVI 149
Query: 125 SSN---SSLGHPILADPKSRGPLICKLRKEQEISLRCIAKKGIAKEHAKWSPTSAVAFEY 181
SN ++GHPI+ D + G LICKLRK QE+ L C+AKKGIAKEHAKW P +A+ FEY
Sbjct: 150 VSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFEY 209
Query: 182 DPWNKLQHTDYWFENDADAEWPKSKNADWEEPPREGEPFNFQEEPRRFYMDVESVGSIPP 241
DPWNKL+HTDYW+E D+ EWP+SKN ++E+PP EG+PF+++ + FYM+VESVGSIP
Sbjct: 210 DPWNKLKHTDYWYEQDSAKEWPQSKNCEYEDPPNEGDPFDYKAQADTFYMNVESVGSIPV 269
Query: 242 NEIMVQGLRILQEKLAVLVRDLDEEQPTQLSANELNM 278
++++V+G+ LQ+K+A ++ L TQ+ +++N
Sbjct: 270 DQVVVRGIDTLQKKVASILLAL-----TQMDQDKVNF 301
>3J0K-C nrPDB
Length = 268
Score = 368 bits (945), Expect = e-102, Method: Composition-based stats.
Identities = 148/278 (53%), Positives = 206/278 (74%), Gaps = 14/278 (5%)
Query: 1 MDSE-THITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPD 59
M E + IR SK++VDF+L+N LA+ANSLRRV++AEIPT+AID VE+ NT+V+ D
Sbjct: 1 MSEEGPQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLAD 60
Query: 60 EFLAHRLGMIPLDSSNIDEPPPVGLEYTRNCDCDQYCPKCSVELFLNAKCTGEGTMEIYA 119
EF+AHRLG+IPL S +I++ LEY+R+C C+ +C KCSV L L A E T +Y+
Sbjct: 61 EFIAHRLGLIPLQSMDIEQ-----LEYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYS 115
Query: 120 RDLVVSSN---SSLGHPILADPKSRGPLICKLRKEQEISLRCIAKKGIAKEHAKWSPTSA 176
+DLV+ SN ++GHPI+ D + G LICKLRK QE+ L C+AKKGIAKEHAKW P +A
Sbjct: 116 KDLVIVSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAA 175
Query: 177 VAFEYDPWNKLQHTDYWFENDADAEWPKSKNADWEEPPREGEPFNFQEEPRRFYMDVESV 236
+ FEYDPWNKL+HTDYW+E D+ EWP+SKN ++E+PP EG+PF+++ + FYM+VESV
Sbjct: 176 IEFEYDPWNKLKHTDYWYEQDSAKEWPQSKNCEYEDPPNEGDPFDYKAQADTFYMNVESV 235
Query: 237 GSIPPNEIMVQGLRILQEKLAVLVRDLDEEQPTQLSAN 274
GSIP ++++V+G+ LQ+K+A ++ L TQ+ +
Sbjct: 236 GSIPVDQVVVRGIDTLQKKVASILLAL-----TQMDQD 268
>5IYA-C nrPDB
Length = 275
Score = 321 bits (823), Expect = 2e-88, Method: Composition-based stats.
Identities = 119/274 (43%), Positives = 174/274 (63%), Gaps = 20/274 (7%)
Query: 2 DSETHITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEF 61
++ + I ++ +V F++ NT LAVANS+RRV +AE+P +AID V+I+ N+SV+ DEF
Sbjct: 4 ANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEF 63
Query: 62 LAHRLGMIPLDSSNIDEPPPVGLEYTRNCDCDQYCPKCSVELFLNAKCTGEGTMEIYARD 121
+AHRLG+IPL S +I + L+Y+R+C C+++CP+CSVE L+ +C + T + +RD
Sbjct: 64 IAHRLGLIPLISDDIVD----KLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 122 LVVSSNSSLGHPILADPKSRGP---------LICKLRKEQEISLRCIAKKGIAKEHAKWS 172
L+ SNS P+ + + P LI KLRK QE+ LR AKKG KEHAKW+
Sbjct: 120 LI--SNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
Query: 173 PTSAVAFEYDPWNKLQHTDYWFENDADAEWPKSKNADWEEPPREGEPFNFQEEPRRFYMD 232
PT+ VAFEYDP N L+HT Y EWPKS+ ++ +E + P++ +P RFY +
Sbjct: 178 PTAGVAFEYDPDNALRHTVY----PKPEEWPKSEYSELDEDESQA-PYDPNGKPERFYYN 232
Query: 233 VESVGSIPPNEIMVQGLRILQEKLAVLVRDLDEE 266
VES GS+ P I++ L L++KL+ L L E
Sbjct: 233 VESCGSLRPETIVLSALSGLKKKLSDLQTQLSHE 266
>5LMX-C nrPDB
Length = 380
Score = 264 bits (675), Expect = 3e-71, Method: Composition-based stats.
Identities = 86/319 (26%), Positives = 140/319 (43%), Gaps = 50/319 (15%)
Query: 3 SETHITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFL 62
+ + I ++ +F L N ++AN+ RR++++E+P+VA + V NTSV+ DE L
Sbjct: 38 KDFEVNISSLDAREANFDLINIDTSIANAFRRIMISEVPSVAAEYVYFFNNTSVIQDEVL 97
Query: 63 AHRLGMIPLDSSNIDEPPPVGLEYTRNCDCDQYCPKCSVELFLNAKCTGEG--------- 113
AHR+G++PL +P + + D +++ + ++ L LN KCT
Sbjct: 98 AHRIGLVPLKV----DPDMLTWVDSNLPDDEKFTDENTIVLSLNVKCTRNPDAPKGSTDP 153
Query: 114 -----TMEIYARDLVV-----SSNSSLGHPILADPKSRGPLICKLRKEQEISLRCIAKKG 163
+YARDL S + P++ P L+ KLR QEISL+ G
Sbjct: 154 KELYNNAHVYARDLKFEPQGRQSTTFADCPVV--PADPDILLAKLRPGQEISLKAHCILG 211
Query: 164 IAKEHAKWSPTSAVAFEYDPW-NKLQ----HTDYWFEN---------DADAEWPKSKNAD 209
I +HAK+SP S ++ P N LQ + F+ D ++ K+A
Sbjct: 212 IGGDHAKFSPVSTASYRLLPQINILQPIKGESARRFQKCFPPGVIGIDEGSDEAYVKDAR 271
Query: 210 WEEPPRE-------GEPFNFQEEPRRFYMDVESVGSIPPNEIMVQGLRILQEKLAVLVRD 262
+ RE + F +VES G++ P EI + +RIL+ K
Sbjct: 272 KDTVSREVLRYEEFADKVKLGRVRNHFIFNVESAGAMTPEEIFFKSVRILKNKAEY---- 327
Query: 263 LDEEQPTQLSANELNMEEN 281
L TQ S + ++N
Sbjct: 328 LKNCPITQGSMEKRRWKKN 346
>6F44-C nrPDB
Length = 335
Score = 263 bits (672), Expect = 6e-71, Method: Composition-based stats.
Identities = 82/297 (27%), Positives = 133/297 (44%), Gaps = 46/297 (15%)
Query: 3 SETHITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFL 62
+ + I ++ +F L N ++AN+ RR++++E+P+VA + V NTSV+ DE L
Sbjct: 38 KDFEVNISSLDAREANFDLINIDTSIANAFRRIMISEVPSVAAEYVYFFNNTSVIQDEVL 97
Query: 63 AHRLGMIPLDSSNIDEPPPVGLEYTRNCDCDQYCPKCSVELFLNAKCTGEG--------- 113
AHR+G++PL +P + + D +++ + ++ L LN KCT
Sbjct: 98 AHRIGLVPLKV----DPDMLTWVDSNLPDDEKFTDENTIVLSLNVKCTRNPDAPKGSTDP 153
Query: 114 -----TMEIYARDLVV-----SSNSSLGHPILADPKSRGPLICKLRKEQEISLRCIAKKG 163
+YARDL S + P++ P L+ KLR QEISL+ G
Sbjct: 154 KELYNNAHVYARDLKFEPQGRQSTTFADCPVV--PADPDILLAKLRPGQEISLKAHCILG 211
Query: 164 IAKEHAKWSPTSAVAFEYDPW-NKLQ----HTDYWFEN---------DADAEWPKSKNAD 209
I +HAK+SP S ++ P N LQ + F+ D ++ K+A
Sbjct: 212 IGGDHAKFSPVSTASYRLLPQINILQPIKGESARRFQKCFPPGVIGIDEGSDEAYVKDAR 271
Query: 210 WEEPPRE-------GEPFNFQEEPRRFYMDVESVGSIPPNEIMVQGLRILQEKLAVL 259
+ RE + F +VES G++ P EI + +RIL+ K L
Sbjct: 272 KDTVSREVLRYEEFADKVKLGRVRNHFIFNVESAGAMTPEEIFFKSVRILKNKAEYL 328
>2PMZ-D nrPDB
Length = 265
Score = 261 bits (666), Expect = 3e-70, Method: Composition-based stats.
Identities = 73/277 (26%), Positives = 118/277 (42%), Gaps = 35/277 (12%)
Query: 7 ITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRL 66
I + + +D V L N++RR + +P +A+D V N S + DE LAHRL
Sbjct: 3 INLLHKDDTRIDLVFEGYPLEFVNAIRRASMLYVPIMAVDDVYFIENNSPLYDEILAHRL 62
Query: 67 GMIPLDSSNIDEPPPVGLEYTR---NC-DCDQYCPKCSVELFLNAKCTGEGTMEIYARDL 122
+IP S L+ R C +C + C KC ++++ A+ E M IY++D
Sbjct: 63 ALIPFMSEE-------ALDTYRWPEECIECTENCEKCYTKIYIEAEAPNEPRM-IYSKD- 113
Query: 123 VVSSNSSLGHPILADPKSRGPLICKLRKEQEISLRCIAKKGIAKEHAKWSPTSAVAFEYD 182
+ S PI D I L Q+ISL + G KEHAK+ P S Y
Sbjct: 114 -IKSEDPSVVPISGDIP-----IVLLGTNQKISLEARLRLGYGKEHAKFIPVSLSVVRYY 167
Query: 183 P-----------WNKLQHTDYWFENDADAEWPKSKNADWEEPPREGEP---FNFQEEPRR 228
P N + ++ + + EE R +F E+ +
Sbjct: 168 PKVEILANCEKAVNVCPEGVFELKDGKLSVKNELSCTLCEECLRYCNGSIRISFVED--K 225
Query: 229 FYMDVESVGSIPPNEIMVQGLRILQEKLAVLVRDLDE 265
+ +++ESVGS+ P I+++ + + K+ L + L E
Sbjct: 226 YILEIESVGSLKPERILLEAGKSIIRKIEELEKKLVE 262
>2WB1-D nrPDB
Length = 265
Score = 259 bits (661), Expect = 1e-69, Method: Composition-based stats.
Identities = 70/275 (25%), Positives = 113/275 (41%), Gaps = 31/275 (11%)
Query: 7 ITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRL 66
I + + +D V L N++RR + +P ++ID V N S + DE LAHRL
Sbjct: 3 INLLHKDDKRIDLVFEGYPLEFVNAIRRAAMLYVPVMSIDDVYFIENNSPLYDEILAHRL 62
Query: 67 GMIPLDSSNIDEPPPVGLEYTR---NC-DCDQYCPKCSVELFLNAKCTGEGTMEIYARDL 122
+IP S L+ R C DC + C KC ++++ A+ E M +Y++D
Sbjct: 63 ALIPFTSEE-------ALDTYRWPEECIDCTENCEKCYTKIYIEAEALNEPKM-LYSKD- 113
Query: 123 VVSSNSSLGHPILADPKSRGPLICKLRKEQEISLRCIAKKGIAKEHAKWSPTSAVAFEYD 182
+ S PI D I L Q+ISL + G KEHAK+ P S Y
Sbjct: 114 -IKSEDPSIVPISGDIP-----IVLLGANQKISLEARLRLGYGKEHAKFIPVSLAIVRYY 167
Query: 183 PW-----------NKLQHTDYWFENDADAEWPKSKNADWEEPPREGEP-FNFQEEPRRFY 230
P + ++ + + EE R ++
Sbjct: 168 PKVEILGNCEKGATVCPEGVFELKDGKLSVKNELACTLCEECLRYCNGLIRISSVEDKYI 227
Query: 231 MDVESVGSIPPNEIMVQGLRILQEKLAVLVRDLDE 265
+++ESVGS+ P I+++ + + K+ L + L E
Sbjct: 228 LELESVGSLKPERILLEAGKSIIRKIEELEKKLVE 262
>4QIW-D nrPDB
Length = 259
Score = 214 bits (544), Expect = 4e-56, Method: Composition-based stats.
Identities = 78/278 (28%), Positives = 114/278 (41%), Gaps = 46/278 (16%)
Query: 6 HITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHR 65
I +S+ F+++ + AN+LRR +L+E+PT A+D VE N S + DE +AHR
Sbjct: 3 EFKILEKRPDSIKFIVSGVDVPFANALRRTILSEVPTFAVDEVEFLENDSALFDEIIAHR 62
Query: 66 LGMIPLDSSNIDEPPPVGLEYTRNCDCDQYCPKCSVELFLNAKCTGEGTMEIYARDLVVS 125
L MIPL + P + D Y S+E EG +Y+ DL
Sbjct: 63 LAMIPLTT-------PHERFSLDALELDDYTVTLSLE--------AEGPGMVYSGDL--- 104
Query: 126 SNSSLGHPILADPKSRGPLICKLRKEQEISLRCIAKKGIAKEHAKWSPTSAVAFEYDPWN 185
SS G A+P I KL + Q ++ A+ G K+HAKW P F Y +
Sbjct: 105 -KSSDGDVKPANPNIP---IVKLAEGQRLTFNAYARLGRGKDHAKWQP----GFVYYKYL 156
Query: 186 KLQHTDYWFEN-DADAEWPKSKNADWEEPPREG---------EPFNFQEE---------- 225
H + + E + + EE E P F+E
Sbjct: 157 TKIHVSKDVPDWEELKELAERRGLPVEESDEEIVITTIKAFYLPRKFEEHMGKGIREEIV 216
Query: 226 PRRFYMDVESVGSIPPNEIMVQGLRILQEKLAVLVRDL 263
P F VE+ G +P EI+ L+IL K + +L
Sbjct: 217 PGSFVFTVETNGELPVEEIVSIALKILMRKSDRFINEL 254
>1IW7-A nrPDB
Length = 315
Score = 54.1 bits (128), Expect = 8e-08, Method: Composition-based stats.
Identities = 51/261 (19%), Positives = 90/261 (34%), Gaps = 46/261 (17%)
Query: 3 SETHITIRNISKNSVDFVLT----NTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMP 58
T+R + +FVL + + N LRR++L+ IP A+ V I
Sbjct: 7 KAPVFTVRTQGREYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYI-------- 58
Query: 59 DEFLAHRLGMIPLDSSNIDEPPPVGLEYTRNCDCDQYCPKCSVELFLNAKCTGEGTMEIY 118
E + H IP ++ E + P L EG E+
Sbjct: 59 -EDVLHEFSTIPGVKEDVVEIILN----LKELVVRFLNPSLQTVTLL---LKAEGPKEVK 110
Query: 119 ARDLVVSSNSSLGHPILADPKSRGPLICKLRKEQEISLRCIAKKGIAKEHAKWSPTSAVA 178
ARD + ++ + +P I L + +++ +G+ + P
Sbjct: 111 ARDFLPVADVEIMNP--------DLHIATLEEGGRLNMEVRVDRGVG-----YVPAEKHG 157
Query: 179 FEYDPWNKLQHTDYWFENDADAEWPKSKNADWEEPPREGEPFNFQEEPRRFYMDVESVGS 238
+ D N + D F P + A E R G+ + + + + + GS
Sbjct: 158 IK-DRINAIP-VDAVFS-------PVRRVAFQVEDTRLGQRTDL----DKLTLRIWTDGS 204
Query: 239 IPPNEIMVQGLRILQEKLAVL 259
+ P E + Q + IL+E L
Sbjct: 205 VTPLEALNQAVEILREHLTYF 225
>5ZX3-A nrPDB
Length = 368
Score = 52.9 bits (125), Expect = 2e-07, Method: Composition-based stats.
Identities = 48/285 (16%), Positives = 96/285 (33%), Gaps = 52/285 (18%)
Query: 1 MDSETHITIRNISKNSVDFVLT----NTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSV 56
+ ++ ++ N FV+ + NSLRR +L+ IP A+ TS+
Sbjct: 24 ISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAV--------TSI 75
Query: 57 MPDEFLAHRLGMIPLDSSNIDEPPPVGLEYTRNCDCDQYCPKCSVELFLNAKCTGEGTME 116
D L H +P ++ E + L+ + + +G E
Sbjct: 76 RIDGVL-HEFTTVPGVKEDVTEI-ILNLKSLVVSSEEDEPVTMYLR--------KQGPGE 125
Query: 117 IYARDLVVSSNSSLGHPILADPKSRGPLICKLRKEQEISLRCIAKKGIAKEHAKWSPTSA 176
+ A D+V G + + G I L + ++ + + ++G A + S
Sbjct: 126 VTAGDIV----PPAGVTV----HNPGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASG 177
Query: 177 VAFEYDPWNKLQHTDYWFENDADAEWPKSKNADWEEPPREGEPFNFQEEPRRFYMDVESV 236
P + + P K + R + +F + +DVE+
Sbjct: 178 AEIGRIPVDSIYS-------------PVLKVTYKVDATRVEQRTDF----DKLILDVETK 220
Query: 237 GSIPPNEIMVQGLRILQE-----KLAVLVRDLDEEQPTQLSANEL 276
SI P + + + L E + + + E P+ A+ +
Sbjct: 221 NSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAEADHI 265
>6CCE-A nrPDB
Length = 350
Score = 48.7 bits (114), Expect = 3e-06, Method: Composition-based stats.
Identities = 46/258 (17%), Positives = 88/258 (34%), Gaps = 47/258 (18%)
Query: 1 MDSETHITIRNISKNSVDFVLT----NTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSV 56
+ ++ +++N FV+ + NSLRR +L+ IP A+ TS+
Sbjct: 3 ISQRPTLSEETVAENRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAV--------TSI 54
Query: 57 MPDEFLAHRLGMIPLDSSNIDEPPPVGLEYTRNCDCDQYCPKCSVELFLNAKCTGEGTME 116
D L H +P ++ + + D D+ V ++L +G
Sbjct: 55 RIDGVL-HEFTTVPGVKEDVTDIILNLKGLVVSSDDDE-----PVTMYLR----KQGPGV 104
Query: 117 IYARDLVVSSNSSLGHPILADPKSRGPLICKLRKEQEISLRCIAKKGIAKEHAKWSPTSA 176
+ A D+V G + + I L + ++ + + ++G A + S
Sbjct: 105 VTAGDIV----PPAGVTV----HNPDMHIATLNDKGKLEVELVVERGRGYVPAVQNKASG 156
Query: 177 VAFEYDPWNKLQHTDYWFENDADAEWPKSKNADWEEPPREGEPFNFQEEPRRFYMDVESV 236
P + + P K E R + +F + +DVE+
Sbjct: 157 AEIGRIPVDSIYS-------------PVLKVTYKVEATRVEQRTDF----DKLIIDVETK 199
Query: 237 GSIPPNEIMVQGLRILQE 254
SI P + + L E
Sbjct: 200 NSISPRDALASAGGTLVE 217
>4YLN-A nrPDB
Length = 242
Score = 47.5 bits (111), Expect = 7e-06, Method: Composition-based stats.
Identities = 48/264 (18%), Positives = 88/264 (33%), Gaps = 55/264 (20%)
Query: 7 ITIRNISKNSVDFVLT----NTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFL 62
+ I +S L + N+LRR++L+ +P A+ VEI V+ +
Sbjct: 21 VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEI---DGVLHE--- 74
Query: 63 AHRLGMIPLDSSNIDEPPPVGLEYTRNCDCDQYCPKCSVELFLNAKCTGEGTMEIYARDL 122
+ + + + + K V L LN G + A D+
Sbjct: 75 --------YSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLN----KSGIGPVTAADI 122
Query: 123 VVSSNSSLGHPILADPKSRGPLICKLR-KEQEISLRCIAKKGIAKEHAKWSPTSAVAFEY 181
+ + P +IC L + IS+R ++G Y
Sbjct: 123 THDGDVEIVKP--------QHVICHLTDENASISMRIKVQRGRG---------------Y 159
Query: 182 DPWNKLQHTDYWFENDADAEWPKSKNADWEEPPR-----EGEPFNFQEEPRRFYMDVESV 236
P + H+ E D +A + R E + + + +++E+
Sbjct: 160 VPASTRIHS----EEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETN 215
Query: 237 GSIPPNEIMVQGLRILQEKLAVLV 260
G+I P E + + IL E+L V
Sbjct: 216 GTIDPEEAIRRAATILAEQLEAFV 239
>4MEY-A nrPDB
Length = 335
Score = 47.1 bits (110), Expect = 9e-06, Method: Composition-based stats.
Identities = 50/283 (17%), Positives = 96/283 (33%), Gaps = 56/283 (19%)
Query: 7 ITIRNISKNSVDFVLT----NTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFL 62
+ I +S L + N+LRR++L+ +P A+ VEI V+ +
Sbjct: 20 VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEI---DGVLHE--- 73
Query: 63 AHRLGMIPLDSSNIDEPPPVGLEYTRNCDCDQYCPKCSVELFLNAKCTGEGTMEIYARDL 122
+ + + + + K V L LN G + A D+
Sbjct: 74 --------YSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLN----KSGIGPVTAADI 121
Query: 123 VVSSNSSLGHPILADPKSRGPLICKLR-KEQEISLRCIAKKGIAKEHAKWSPTSAVAFEY 181
+ + P +IC L + IS+R ++G Y
Sbjct: 122 THDGDVEIVKP--------QHVICHLTDENASISMRIKVQRGRG---------------Y 158
Query: 182 DPWNKLQHTDYWFENDADAEWPKSKNADWEEPPR-----EGEPFNFQEEPRRFYMDVESV 236
P + H+ E D +A + R E + + + +++E+
Sbjct: 159 VPASTRIHS----EEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETN 214
Query: 237 GSIPPNEIMVQGLRILQEKLAVLVRDLDEEQPTQLSANELNME 279
G+I P E + + IL E+L V DL + + ++ + +
Sbjct: 215 GTIDPEEAIRRAATILAEQLEAFV-DLRDVRQPEVKEEKPEFD 256
>1HQM-A nrPDB
Length = 313
Score = 47.1 bits (110), Expect = 9e-06, Method: Composition-based stats.
Identities = 54/271 (19%), Positives = 92/271 (33%), Gaps = 47/271 (17%)
Query: 3 SETHITIRNISKNSVDFVLT----NTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMP 58
T + +FVL + + N LRR++L+ IP A+ V I
Sbjct: 7 KAPVFTATTQGDHYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYI-------- 58
Query: 59 DEFLAHRLGMIPLDSSNIDEPPPVGLEYTRNCDCDQYCPKCSVELFLNAKCTGEGTMEIY 118
E + H IP ++ E + P+ L L A EG E+
Sbjct: 59 -EDVLHEFSTIPGVKEDVVEIILN----LKELVVRFLDPRWRTTLILRA----EGPKEVR 109
Query: 119 ARDLVVSSNSSLGHPILADPKSRGPLICKLRKEQEISLRCIAKKGIAKEHAKWSPTSAVA 178
A D S++ + +P I L + ++ + +G+ + P
Sbjct: 110 AVDFTPSADVEIMNP--------DLHIATLEEGGKLYMEVRVDRGVG-----YVPAERHG 156
Query: 179 FEYDPWNKLQHTDYWFENDADAEWPKSKNADWEEPPREGEPFNFQEEPRRFYMDVESVGS 238
+ D N + D F P + A E R G+ + + + + + GS
Sbjct: 157 IK-DRINAIP-VDAIFS-------PVRRVAFQVEDTRLGQRTDL----DKLTLRIWTDGS 203
Query: 239 IPPNEIMVQGLRILQEKLAVLVRDLDEEQPT 269
+ P E + Q + IL+E L PT
Sbjct: 204 VTPLEALNQAVAILKEHLNYFANPEASLLPT 234
>5V2D-A nrPDB
Length = 501
Score = 34.0 bits (76), Expect = 0.079, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 36/112 (32%), Gaps = 5/112 (4%)
Query: 161 KKGIAKEHAKWSPTSAVAFEYDPWNKLQHTDYWFENDADAEWPKSKNADWEEPPREGEPF 220
+ H +W P F P N WF+ D + NA E+ +
Sbjct: 261 RMKNGGPHFQWQPDLPQLFAVVPRNGRAQDVRWFKGPMDGFQGHTLNAFDEDGKVYVDM- 319
Query: 221 NFQEEPRRFYMDVESVGSIPPNEIMVQGLRILQEKLAVLVRDLDEEQPTQLS 272
FY ++ G +PP E + L L DE +P L+
Sbjct: 320 -PVTGGNIFYFFPQADGHVPPPETLAAC---LMRWTFDLNSGRDEVEPQPLT 367
>4OVR-A nrPDB
Length = 322
Score = 31.0 bits (68), Expect = 0.61, Method: Composition-based stats.
Identities = 13/59 (22%), Positives = 25/59 (42%)
Query: 4 ETHITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFL 62
E + +R +KNSV ++ +S +V A + + ID + D+F+
Sbjct: 248 EEQVQVRKAAKNSVGYMRQLWDAMEISSREKVEKAGVEVITIDKAPFQAAVQPLYDQFV 306
>5KXJ-A nrPDB
Length = 557
Score = 28.7 bits (62), Expect = 3.3, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 26/54 (48%)
Query: 203 PKSKNADWEEPPREGEPFNFQEEPRRFYMDVESVGSIPPNEIMVQGLRILQEKL 256
P+++N E R + + + RF DV+ G + P +I+ + + ++L
Sbjct: 251 PQARNFLLTEALRGEGAYLKRPDGSRFMPDVDERGELAPRDIVARAIDHEMKQL 304
>6EM8-A nrPDB
Length = 818
Score = 28.7 bits (62), Expect = 3.5, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 30/70 (42%)
Query: 97 PKCSVELFLNAKCTGEGTMEIYARDLVVSSNSSLGHPILADPKSRGPLICKLRKEQEISL 156
P+ S + +K T++ ARDL V + P++ K +I L + + +
Sbjct: 145 PEMSNKNAQASKSNNTPTLDSLARDLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNP 204
Query: 157 RCIAKKGIAK 166
I + G+ K
Sbjct: 205 VLIGEPGVGK 214
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.303 0.120 0.301
Lambda K H
0.267 0.0372 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,827,626
Number of Sequences: 36641
Number of extensions: 356184
Number of successful extensions: 798
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 717
Number of HSP's gapped (non-prelim): 49
length of query: 297
length of database: 10,336,785
effective HSP length: 96
effective length of query: 201
effective length of database: 6,819,249
effective search space: 1370669049
effective search space used: 1370669049
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.4 bits)
S2: 58 (27.1 bits)