BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= P36145
         (328 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

5OQJ-X nrPDB                                                          668   0.0  
5FMF-S nrPDB                                                          253   8e-68
6O9L-R nrPDB                                                           53   2e-07
5XOH-A nrPDB                                                           36   0.020
5GPY-B nrPDB                                                           35   0.061
2X6Q-A nrPDB                                                           35   0.065
6HHQ-p nrPDB                                                           32   0.27 
2BMX-A nrPDB                                                           32   0.29 
5TSG-B nrPDB                                                           32   0.38 
3AL0-B nrPDB                                                           30   1.0  
5HS2-A nrPDB                                                           30   1.8  
5YFP-F nrPDB                                                           29   2.2  
4B4V-A nrPDB                                                           28   4.1  
3IP4-B nrPDB                                                           28   4.8  
1MLI-A nrPDB                                                           28   7.1  

>5OQJ-X nrPDB
          Length = 328

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/328 (100%), Positives = 328/328 (100%)

Query: 1   MSKNRDPLLANLNAFKSKVKSAPVIAPAKVGQKKTNDTVITIDGNTRKRTASERAQENTL 60
           MSKNRDPLLANLNAFKSKVKSAPVIAPAKVGQKKTNDTVITIDGNTRKRTASERAQENTL
Sbjct: 1   MSKNRDPLLANLNAFKSKVKSAPVIAPAKVGQKKTNDTVITIDGNTRKRTASERAQENTL 60

Query: 61  NSAKNPVLVDIKKEAGSNSSNAISLDDDDDDEDFGSSPSKKVRPGSIAAAALQANQTDIS 120
           NSAKNPVLVDIKKEAGSNSSNAISLDDDDDDEDFGSSPSKKVRPGSIAAAALQANQTDIS
Sbjct: 61  NSAKNPVLVDIKKEAGSNSSNAISLDDDDDDEDFGSSPSKKVRPGSIAAAALQANQTDIS 120

Query: 121 KSHDSSKLLWATEYIQKKGKPVLVNELLDYLSMKKDDKVIELLKKLDRIEFDPKKGTFKY 180
           KSHDSSKLLWATEYIQKKGKPVLVNELLDYLSMKKDDKVIELLKKLDRIEFDPKKGTFKY
Sbjct: 121 KSHDSSKLLWATEYIQKKGKPVLVNELLDYLSMKKDDKVIELLKKLDRIEFDPKKGTFKY 180

Query: 181 LSTYDVHSPSELLKLLRSQVTFKGISCKDLKDGWPQCDETINQLEEDSKILVLRTKKDKT 240
           LSTYDVHSPSELLKLLRSQVTFKGISCKDLKDGWPQCDETINQLEEDSKILVLRTKKDKT
Sbjct: 181 LSTYDVHSPSELLKLLRSQVTFKGISCKDLKDGWPQCDETINQLEEDSKILVLRTKKDKT 240

Query: 241 PRYVWYNSGGNLKCIDEEFVKMWENVQLPQFAELPRKLQDLGLKPASVDPATIKRQTKRV 300
           PRYVWYNSGGNLKCIDEEFVKMWENVQLPQFAELPRKLQDLGLKPASVDPATIKRQTKRV
Sbjct: 241 PRYVWYNSGGNLKCIDEEFVKMWENVQLPQFAELPRKLQDLGLKPASVDPATIKRQTKRV 300

Query: 301 EVKKKRQRKGKITNTHMTGILKDYSHRV 328
           EVKKKRQRKGKITNTHMTGILKDYSHRV
Sbjct: 301 EVKKKRQRKGKITNTHMTGILKDYSHRV 328


>5FMF-S nrPDB
          Length = 123

 Score =  253 bits (646), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 123/123 (100%), Positives = 123/123 (100%)

Query: 125 SSKLLWATEYIQKKGKPVLVNELLDYLSMKKDDKVIELLKKLDRIEFDPKKGTFKYLSTY 184
           SSKLLWATEYIQKKGKPVLVNELLDYLSMKKDDKVIELLKKLDRIEFDPKKGTFKYLSTY
Sbjct: 1   SSKLLWATEYIQKKGKPVLVNELLDYLSMKKDDKVIELLKKLDRIEFDPKKGTFKYLSTY 60

Query: 185 DVHSPSELLKLLRSQVTFKGISCKDLKDGWPQCDETINQLEEDSKILVLRTKKDKTPRYV 244
           DVHSPSELLKLLRSQVTFKGISCKDLKDGWPQCDETINQLEEDSKILVLRTKKDKTPRYV
Sbjct: 61  DVHSPSELLKLLRSQVTFKGISCKDLKDGWPQCDETINQLEEDSKILVLRTKKDKTPRYV 120

Query: 245 WYN 247
           WYN
Sbjct: 121 WYN 123


>6O9L-R nrPDB
          Length = 291

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 23/162 (14%)

Query: 176 GTFKYLSTYDVHSPSELLKLL--RSQVTFKGISCKDLKDGWPQCDETINQLEEDSKILVL 233
           G + +   Y+V     LL+LL    Q    GI  +D+++  P   + +  L  D  + V 
Sbjct: 135 GKYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQKAVKALG-DQILFVN 193

Query: 234 RTKKDKTPRYVWYNSGGNLKCIDEEFVKMWENVQLPQFAE------LPRK----LQDLGL 283
           R  K K    +++N       +DEEF K+W +V +    E      L R+    +Q+ G 
Sbjct: 194 RPDKKKI---LFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQGISSMQESG- 249

Query: 284 KPASVDPATIKRQTKRVEVKKKRQRKGKITNTHMTGILKDYS 325
            P  V P  I+R+ K    KK+R    K  N H+ G+LKDYS
Sbjct: 250 -PKKVAP--IQRRKKPASQKKRR---FKTHNEHLAGVLKDYS 285


>5XOH-A nrPDB
          Length = 359

 Score = 36.2 bits (82), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 19/102 (18%)

Query: 165 KLDRIEFDPKKGTFKYLSTYDV---------HSPSELLKLLRSQVTFKGISCK--DLKDG 213
           +LD +    K G   YLS  D+         H+P  L ++LR   T+K + CK  +L DG
Sbjct: 36  ELDILNTISKAGPGNYLSPSDLASKLLMSNPHAPIMLERILRVLATYKVLGCKPSELSDG 95

Query: 214 ---W-----PQCDETINQLEEDSKILVLRTKKDKTPRYVWYN 247
              W     P C    N  +  S   +L   +D+ P   WY+
Sbjct: 96  EVEWLYCWTPVCKFLSNNEDGASIAPLLLVHQDQVPMKSWYH 137


>5GPY-B nrPDB
          Length = 108

 Score = 34.7 bits (78), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 6/89 (6%)

Query: 180 YLSTYDVHSPSELLKLL--RSQVTFKGISCKDLKDGWPQCDETINQLEEDSKILVLRTKK 237
           ++  Y+V     LL+LL    Q    GI  +D+++  P   + +  L  D  + V R  K
Sbjct: 3   HMPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQKAVKALG-DQILFVNRPDK 61

Query: 238 DKTPRYVWYNSGGNLKCIDEEFVKMWENV 266
            K    +++N       +DEEF K+W +V
Sbjct: 62  KKI---LFFNDKSCQFSVDEEFQKLWRSV 87


>2X6Q-A nrPDB
          Length = 416

 Score = 34.7 bits (78), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 13/114 (11%)

Query: 133 EYIQK---KGKPVLVNELLDYLSMKKDD-KVIELLKKLDRIEFDPKKGTFKYLSTYD--- 185
           EY+Q    + K V++   +D LS K  + K  E+L+ L+R + DP+K     +S +D   
Sbjct: 185 EYVQPELDRNKAVIMPPSIDPLSEKNVELKQTEILRILERFDVDPEKPIITQVSRFDPWK 244

Query: 186 -VHSPSELLKLLRS-----QVTFKGISCKDLKDGWPQCDETINQLEEDSKILVL 233
            +    E+ + ++      Q+   G+   D  +GW   ++T+ ++ ED  + VL
Sbjct: 245 GIFDVIEIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVL 298


>6HHQ-p nrPDB
          Length = 256

 Score = 32.3 bits (72), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 7/100 (7%)

Query: 97  SPSKKVRPGSIAAAALQANQTDISKSHDSSKLLWATEYIQKKGKPVLVNELLDYLSMKKD 156
           +P KKV P    A + ++N+T    +H + K     + +Q K       +  +Y+ +++ 
Sbjct: 2   APGKKVAPAPFGAKSTKSNKTRNPLTHSTPKNFGIGQAVQPKRNLSRYVKWPEYVRVQRQ 61

Query: 157 DKVIELLKKLDRIEFDPKKGTFKYLSTYDVHSPSELLKLL 196
            K++ +     R++  P    F+Y  T D ++ +E  KL 
Sbjct: 62  KKILSI-----RLKVPPTIAQFQY--TLDRNTAAETFKLF 94


>2BMX-A nrPDB
          Length = 195

 Score = 32.3 bits (72), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 6/98 (6%)

Query: 54  RAQENTLNSAKNPVLVDIKKEAGSNSSNAISLDDDDDDEDFGSSPSKKVRPGSIAAAALQ 113
           RAQ N L +   P+L DIK+E  S ++  ++ D   D   F   P+ +++  S  A ++ 
Sbjct: 97  RAQHNDLKTLPFPMLSDIKREL-SQAAGVLNADGVADRVTFIVDPNNEIQFVSATAGSVG 155

Query: 114 ANQTDISKSHDS--SKLLWATEYIQKKGKPVL-VNELL 148
            N  ++ +  D+  S  L A+ +  +KG P L   ELL
Sbjct: 156 RNVDEVLRVLDALQSDELCASNW--RKGDPTLDAGELL 191


>5TSG-B nrPDB
          Length = 588

 Score = 32.0 bits (71), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 5/70 (7%)

Query: 238 DKTPRYVWYNSGGNLKCIDEEFVKMWENVQLPQFAELPRKLQDLGLKPASVDPATIKRQT 297
           D+ P YV Y   G +KC +  +      V   Q   +  ++++L L  A  + A IKR++
Sbjct: 500 DEGPSYVCYKGTGCVKCNNTGY---KGRVGFYQVMPMLEEIRELILNGA--NTAEIKRES 554

Query: 298 KRVEVKKKRQ 307
            R+ +K  RQ
Sbjct: 555 MRLGIKTMRQ 564


>3AL0-B nrPDB
          Length = 482

 Score = 30.4 bits (67), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 3/47 (6%)

Query: 185 DVHSPSE---LLKLLRSQVTFKGISCKDLKDGWPQCDETINQLEEDS 228
           D+ SP E    ++ LRS V + G+S  D++ G  +CD  I+ ++ ++
Sbjct: 163 DISSPREARVFMEKLRSIVRYLGVSTGDMEKGALRCDANISVVDTET 209


>5HS2-A nrPDB
          Length = 232

 Score = 29.6 bits (65), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 20/123 (16%)

Query: 134 YIQKKGKPVLVNELLDYLSMKKDDKVIELLKKLDRIEFDPKKGTFKYLSTYDVHSPSELL 193
           +I+ KG PV+++ L  + S ++ DK+I ++ + +R  F       + LS Y   +  EL+
Sbjct: 24  FIELKGDPVIIHTLRVFDSHRQCDKIILVINEQEREHFQ------QLLSDYPFQTSIELV 77

Query: 194 KL--LRSQVTFKGISCKD------LKDG------WPQCDETINQLEEDSKILVLRTKKDK 239
                R    +KG+          + DG        Q DE I + E+    ++    KD 
Sbjct: 78  AGGDERQHSVYKGLKAVKQEKIVLVHDGARPFIKHEQIDELIAEAEQTGAAILAVPVKDT 137

Query: 240 TPR 242
             R
Sbjct: 138 IKR 140


>5YFP-F nrPDB
          Length = 910

 Score = 29.3 bits (64), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 247 NSGGNLKCIDEEFVKMWENVQLPQFAELPRKLQ 279
           N G NL  + +EFV ++EN  LPQ+ E   K++
Sbjct: 246 NLGKNLIKVGQEFVAIYENELLPQWLETRSKMK 278


>4B4V-A nrPDB
          Length = 303

 Score = 28.5 bits (62), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 55/146 (37%), Gaps = 33/146 (22%)

Query: 8   LLANLNAFKSKVKSAPVIAPAKVGQKKTNDTVITIDGNTRKRTAS-----ERAQENT--- 59
           LL  + A K+K    P++A   VG    + T + + GN  +R        E  QE T   
Sbjct: 39  LLVRVEALKAKTGRTPILATILVGDDGASATYVRMKGNACRRVGMDSLKIELPQETTTEQ 98

Query: 60  -------LNS--------AKNPVLVDIKKEAGSNSSNAISLDDDDDDE---DFGSSPSKK 101
                  LN+         ++PV   I + A     +AISL  D D      FG     +
Sbjct: 99  LLAEIEKLNANPDVHGILLQHPVPAQIDERA---CFDAISLAKDVDGVTCLGFGRMAMGE 155

Query: 102 VRPGSIAAAA----LQANQTDISKSH 123
              GS   A     L+ N  +I+  H
Sbjct: 156 AAYGSATPAGIMTILKENNIEIAGKH 181


>3IP4-B nrPDB
          Length = 483

 Score = 28.1 bits (61), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 5/54 (9%)

Query: 174 KKGT--FKYLSTYDVHSPSE---LLKLLRSQVTFKGISCKDLKDGWPQCDETIN 222
           ++GT   + +S  D+ SP E    L+ LRS + + G+S   +++G  +CD  I+
Sbjct: 143 RQGTPLIEIVSEPDIRSPKEAYAYLEKLRSIIQYTGVSDVKMEEGSLRCDANIS 196


>1MLI-A nrPDB
          Length = 96

 Score = 27.7 bits (60), Expect = 7.1,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 223 QLEEDSKILVLRTKKDKTPRYVWYNSG--GNLKCIDEEFVKMWEN--VQLPQFAELPRKL 278
           QL+ D K L  R +++ T R++W  +G   N    D   V+   +  +QLP F  +  ++
Sbjct: 22  QLKADEKELAQRLQREGTWRHLWRIAGHYANYSVFDVPSVEALHDTLMQLPLFPYMDIEV 81

Query: 279 QDLGLKPASV 288
             L   P+S+
Sbjct: 82  DGLCRHPSSI 91


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

5OQJ-X nrPDB                                                          578   e-165
5FMF-S nrPDB                                                          221   3e-58
6O9L-R nrPDB                                                          191   3e-49

Sequences not found previously or not previously below threshold:

5GPY-B nrPDB                                                          132   2e-31
2X6Q-A nrPDB                                                           42   3e-04
2BMX-A nrPDB                                                           37   0.012
1K1D-A nrPDB                                                           33   0.20 
6HHQ-p nrPDB                                                           31   0.64 
5GAD-i nrPDB                                                           31   0.71 
5YFP-F nrPDB                                                           31   0.72 
4C7O-A nrPDB                                                           31   0.72 
5GAF-i nrPDB                                                           31   0.79 
2J28-9 nrPDB                                                           30   1.1  
5TRD-A nrPDB                                                           30   1.3  
5HS2-A nrPDB                                                           30   1.5  
3B46-A nrPDB                                                           30   1.6  
2E8U-A nrPDB                                                           29   2.3  
3B5K-A nrPDB                                                           29   3.5  
2V3C-C nrPDB                                                           29   4.1  
3SS6-A nrPDB                                                           29   4.3  
2JQV-A nrPDB                                                           29   4.5  
4OIC-B nrPDB                                                           28   4.6  

>5OQJ-X nrPDB
          Length = 328

 Score =  578 bits (1490), Expect = e-165,   Method: Composition-based stats.
 Identities = 328/328 (100%), Positives = 328/328 (100%)

Query: 1   MSKNRDPLLANLNAFKSKVKSAPVIAPAKVGQKKTNDTVITIDGNTRKRTASERAQENTL 60
           MSKNRDPLLANLNAFKSKVKSAPVIAPAKVGQKKTNDTVITIDGNTRKRTASERAQENTL
Sbjct: 1   MSKNRDPLLANLNAFKSKVKSAPVIAPAKVGQKKTNDTVITIDGNTRKRTASERAQENTL 60

Query: 61  NSAKNPVLVDIKKEAGSNSSNAISLDDDDDDEDFGSSPSKKVRPGSIAAAALQANQTDIS 120
           NSAKNPVLVDIKKEAGSNSSNAISLDDDDDDEDFGSSPSKKVRPGSIAAAALQANQTDIS
Sbjct: 61  NSAKNPVLVDIKKEAGSNSSNAISLDDDDDDEDFGSSPSKKVRPGSIAAAALQANQTDIS 120

Query: 121 KSHDSSKLLWATEYIQKKGKPVLVNELLDYLSMKKDDKVIELLKKLDRIEFDPKKGTFKY 180
           KSHDSSKLLWATEYIQKKGKPVLVNELLDYLSMKKDDKVIELLKKLDRIEFDPKKGTFKY
Sbjct: 121 KSHDSSKLLWATEYIQKKGKPVLVNELLDYLSMKKDDKVIELLKKLDRIEFDPKKGTFKY 180

Query: 181 LSTYDVHSPSELLKLLRSQVTFKGISCKDLKDGWPQCDETINQLEEDSKILVLRTKKDKT 240
           LSTYDVHSPSELLKLLRSQVTFKGISCKDLKDGWPQCDETINQLEEDSKILVLRTKKDKT
Sbjct: 181 LSTYDVHSPSELLKLLRSQVTFKGISCKDLKDGWPQCDETINQLEEDSKILVLRTKKDKT 240

Query: 241 PRYVWYNSGGNLKCIDEEFVKMWENVQLPQFAELPRKLQDLGLKPASVDPATIKRQTKRV 300
           PRYVWYNSGGNLKCIDEEFVKMWENVQLPQFAELPRKLQDLGLKPASVDPATIKRQTKRV
Sbjct: 241 PRYVWYNSGGNLKCIDEEFVKMWENVQLPQFAELPRKLQDLGLKPASVDPATIKRQTKRV 300

Query: 301 EVKKKRQRKGKITNTHMTGILKDYSHRV 328
           EVKKKRQRKGKITNTHMTGILKDYSHRV
Sbjct: 301 EVKKKRQRKGKITNTHMTGILKDYSHRV 328


>5FMF-S nrPDB
          Length = 123

 Score =  221 bits (563), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 123/123 (100%), Positives = 123/123 (100%)

Query: 125 SSKLLWATEYIQKKGKPVLVNELLDYLSMKKDDKVIELLKKLDRIEFDPKKGTFKYLSTY 184
           SSKLLWATEYIQKKGKPVLVNELLDYLSMKKDDKVIELLKKLDRIEFDPKKGTFKYLSTY
Sbjct: 1   SSKLLWATEYIQKKGKPVLVNELLDYLSMKKDDKVIELLKKLDRIEFDPKKGTFKYLSTY 60

Query: 185 DVHSPSELLKLLRSQVTFKGISCKDLKDGWPQCDETINQLEEDSKILVLRTKKDKTPRYV 244
           DVHSPSELLKLLRSQVTFKGISCKDLKDGWPQCDETINQLEEDSKILVLRTKKDKTPRYV
Sbjct: 61  DVHSPSELLKLLRSQVTFKGISCKDLKDGWPQCDETINQLEEDSKILVLRTKKDKTPRYV 120

Query: 245 WYN 247
           WYN
Sbjct: 121 WYN 123


>6O9L-R nrPDB
          Length = 291

 Score =  191 bits (486), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 23/162 (14%)

Query: 176 GTFKYLSTYDVHSPSELLKLL--RSQVTFKGISCKDLKDGWPQCDETINQLEEDSKILVL 233
           G + +   Y+V     LL+LL    Q    GI  +D+++  P   + +  L  D  + V 
Sbjct: 135 GKYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQKAVKALG-DQILFVN 193

Query: 234 RTKKDKTPRYVWYNSGGNLKCIDEEFVKMWENVQLPQFAE------LPRK----LQDLGL 283
           R  K K    +++N       +DEEF K+W +V +    E      L R+    +Q+ G 
Sbjct: 194 RPDKKKI---LFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQGISSMQESG- 249

Query: 284 KPASVDPATIKRQTKRVEVKKKRQRKGKITNTHMTGILKDYS 325
            P  V P  I+R+ K    KK+R    K  N H+ G+LKDYS
Sbjct: 250 -PKKVAP--IQRRKKPASQKKRR---FKTHNEHLAGVLKDYS 285


>5GPY-B nrPDB
          Length = 108

 Score =  132 bits (332), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 12/107 (11%)

Query: 179 KYLSTYDVHSPSELLKLL--RSQVTFKGISCKDLKDGWPQCDETINQLEEDSKILVLRTK 236
            ++  Y+V     LL+LL    Q    GI  +D+++  P   + +  L  D  + V R  
Sbjct: 2   SHMPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQKAVKALG-DQILFVNRPD 60

Query: 237 KDKTPRYVWYNSGGNLKCIDEEFVKMWENVQLPQFAE------LPRK 277
           K K    +++N       +DEEF K+W +V +    E      L R+
Sbjct: 61  KKKI---LFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQ 104


>2X6Q-A nrPDB
          Length = 416

 Score = 42.4 bits (98), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 13/114 (11%)

Query: 133 EYIQ---KKGKPVLVNELLDYLSMKKDD-KVIELLKKLDRIEFDPKKGTFKYLSTYD--- 185
           EY+Q    + K V++   +D LS K  + K  E+L+ L+R + DP+K     +S +D   
Sbjct: 185 EYVQPELDRNKAVIMPPSIDPLSEKNVELKQTEILRILERFDVDPEKPIITQVSRFDPWK 244

Query: 186 -VHSPSELLKLLRS-----QVTFKGISCKDLKDGWPQCDETINQLEEDSKILVL 233
            +    E+ + ++      Q+   G+   D  +GW   ++T+ ++ ED  + VL
Sbjct: 245 GIFDVIEIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVL 298


>2BMX-A nrPDB
          Length = 195

 Score = 37.0 bits (84), Expect = 0.012,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 6/98 (6%)

Query: 54  RAQENTLNSAKNPVLVDIKKEAGSNSSNAISLDDDDDDEDFGSSPSKKVRPGSIAAAALQ 113
           RAQ N L +   P+L DIK+E  S ++  ++ D   D   F   P+ +++  S  A ++ 
Sbjct: 97  RAQHNDLKTLPFPMLSDIKREL-SQAAGVLNADGVADRVTFIVDPNNEIQFVSATAGSVG 155

Query: 114 ANQTDISKSHDS--SKLLWATEYIQKKGKPVL-VNELL 148
            N  ++ +  D+  S  L A+ +  +KG P L   ELL
Sbjct: 156 RNVDEVLRVLDALQSDELCASNW--RKGDPTLDAGELL 191


>1K1D-A nrPDB
          Length = 460

 Score = 32.8 bits (73), Expect = 0.20,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 52/160 (32%), Gaps = 18/160 (11%)

Query: 135 IQKKGKPVLVNELLDYLSMKKDDKVIELLKKLDR--IEFDPKKGTFKYLSTYDVHSPSEL 192
           I K G  V   +  +   + KD K+  + + L+    E    KG + +    D H+    
Sbjct: 4   IIKNGTIVTATDTYEAHLLIKDGKIAMIGQNLEEKGAEVIDAKGCYVFPGGIDPHT---- 59

Query: 193 LKLLRSQVTFKGISCKDLKDGWPQCDETINQLEEDSKI----LVLRTKKDKTPRYVWYNS 248
                  +   G   KD  +               + I    L  + +  K     W+N 
Sbjct: 60  ----HLDMPLGGTVTKDDFE----SGTIAAAFGGTTTIIDFCLTNKGEPLKKAIETWHNK 111

Query: 249 GGNLKCIDEEFVKMWENVQLPQFAELPRKLQDLGLKPASV 288
                 ID  F  M   +      ELP+ L++ G+    V
Sbjct: 112 ANGKAVIDYGFHLMISEITDDVLEELPKVLEEEGITSLKV 151


>6HHQ-p nrPDB
          Length = 256

 Score = 31.3 bits (69), Expect = 0.64,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 7/104 (6%)

Query: 97  SPSKKVRPGSIAAAALQANQTDISKSHDSSKLLWATEYIQKKGKPVLVNELLDYLSMKKD 156
           +P KKV P    A + ++N+T    +H + K     + +Q K       +  +Y+ +++ 
Sbjct: 2   APGKKVAPAPFGAKSTKSNKTRNPLTHSTPKNFGIGQAVQPKRNLSRYVKWPEYVRVQRQ 61

Query: 157 DKVIELLKKLDRIEFDPKKGTFKYLSTYDVHSPSELLKLLRSQV 200
            K++ +     R++  P    F+Y  T D ++ +E  KL     
Sbjct: 62  KKILSI-----RLKVPPTIAQFQY--TLDRNTAAETFKLFNKYR 98


>5GAD-i nrPDB
          Length = 450

 Score = 30.9 bits (68), Expect = 0.71,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 12/118 (10%)

Query: 192 LLKLLRSQVTFKGISCKDLKDGWPQCDETINQLEEDSKI-----LVLRTKKDKTPRYVWY 246
           L + LR+      ++  ++KD   +    +  LE D  +      + R K+      V  
Sbjct: 6   LSRTLRNISGRGRLTEDNVKDTLREVRMAL--LEADVALPVVREFINRVKEKAVGHEV-- 61

Query: 247 NSGGNLKCIDEEFVKMWENVQLPQFAELPRKLQDLGLKPASVDPATIKRQTKRVEVKK 304
                     +EFVK+  N  +    E  + L      PA V  A ++   K   V K
Sbjct: 62  ---NKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGK 116


>5YFP-F nrPDB
          Length = 910

 Score = 30.9 bits (68), Expect = 0.72,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 6/94 (6%)

Query: 227 DSKILVLRTKKDK----TPRYVWYNSGGNLKCIDEEFVKMWENVQLPQFAELPRKLQDLG 282
           +S   + +  KD+        +  N G NL  + +EFV ++EN  LPQ+ E   K++   
Sbjct: 222 NSIPFLQKVTKDECINLIRNSLNLNLGKNLIKVGQEFVAIYENELLPQWLETRSKMKLTN 281

Query: 283 LKPASVDPATIKRQTKRVEVKKKRQRKGKITNTH 316
            K  S  P  I  + +    K       ++ + H
Sbjct: 282 FKFNS--PIEISMRDESFLAKLNLGEFFQLDDFH 313


>4C7O-A nrPDB
          Length = 298

 Score = 30.9 bits (68), Expect = 0.72,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 12/118 (10%)

Query: 192 LLKLLRSQVTFKGISCKDLKDGWPQCDETINQLEEDSKI-----LVLRTKKDKTPRYVWY 246
           L + LR+      ++  ++KD   +    +  LE D  +      + R K+      V  
Sbjct: 9   LSRTLRNISGRGRLTEDNVKDTLREVRMAL--LEADVALPVVREFINRVKEKAVGHEV-- 64

Query: 247 NSGGNLKCIDEEFVKMWENVQLPQFAELPRKLQDLGLKPASVDPATIKRQTKRVEVKK 304
                     +EFVK+  N  +    E  + L      PA V  A ++   K   V K
Sbjct: 65  ---NKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGK 119


>5GAF-i nrPDB
          Length = 398

 Score = 30.9 bits (68), Expect = 0.79,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 12/118 (10%)

Query: 192 LLKLLRSQVTFKGISCKDLKDGWPQCDETINQLEEDSKI-----LVLRTKKDKTPRYVWY 246
           L + LR+      ++  ++KD   +    +  LE D  +      + R K+      V  
Sbjct: 9   LSRTLRNISGRGRLTEDNVKDTLREVRMAL--LEADVALPVVREFINRVKEKAVGHEV-- 64

Query: 247 NSGGNLKCIDEEFVKMWENVQLPQFAELPRKLQDLGLKPASVDPATIKRQTKRVEVKK 304
                     +EFVK+  N  +    E  + L      PA V  A ++   K   V K
Sbjct: 65  ---NKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGK 119


>2J28-9 nrPDB
          Length = 430

 Score = 30.5 bits (67), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 43/113 (38%), Gaps = 2/113 (1%)

Query: 192 LLKLLRSQVTFKGISCKDLKDGWPQCDETINQLEEDSKILVLRTKKDKTPRYVWYNSGGN 251
           L + LR+      ++  ++KD   +    +  LE D  + V+R   ++       +    
Sbjct: 8   LSRTLRNISGRGRLTEDNVKDTLREVRMAL--LEADVALPVVREFINRVKEKAVGHEVNK 65

Query: 252 LKCIDEEFVKMWENVQLPQFAELPRKLQDLGLKPASVDPATIKRQTKRVEVKK 304
                +EFVK+  N  +    E  + L      PA V  A ++   K   V K
Sbjct: 66  SLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGK 118


>5TRD-A nrPDB
          Length = 230

 Score = 30.1 bits (66), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 19/43 (44%)

Query: 169 IEFDPKKGTFKYLSTYDVHSPSELLKLLRSQVTFKGISCKDLK 211
           I+F  K G   YL T ++      L  LR    F+GI  +  K
Sbjct: 119 IQFQEKLGIIPYLGTLNIKVDQASLPELRKIRGFRGIHIEGFK 161


>5HS2-A nrPDB
          Length = 232

 Score = 30.1 bits (66), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 31/53 (58%)

Query: 134 YIQKKGKPVLVNELLDYLSMKKDDKVIELLKKLDRIEFDPKKGTFKYLSTYDV 186
           +I+ KG PV+++ L  + S ++ DK+I ++ + +R  F      + + ++ ++
Sbjct: 24  FIELKGDPVIIHTLRVFDSHRQCDKIILVINEQEREHFQQLLSDYPFQTSIEL 76


>3B46-A nrPDB
          Length = 447

 Score = 29.7 bits (65), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 28/62 (45%)

Query: 6   DPLLANLNAFKSKVKSAPVIAPAKVGQKKTNDTVITIDGNTRKRTASERAQENTLNSAKN 65
           D  + N+     KV   P+  P ++ Q+ T     TID    ++  + + +   +N+  N
Sbjct: 153 DQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITSKTKAVIINTPHN 212

Query: 66  PV 67
           P+
Sbjct: 213 PI 214


>2E8U-A nrPDB
          Length = 340

 Score = 29.3 bits (64), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 118 DISKSHDSSKLLWATEYIQKKGKPVLVNELLDYLSMKKDDKVIELLKKLDRIEFD 172
           DI++   S  ++ A  + + KG+    NE+L  L ++  DK I+ LK +  +EFD
Sbjct: 233 DITEGKLSFPIVHALNFTKTKGQTEQHNEILRILLLRTSDKDIK-LKLIQILEFD 286


>3B5K-A nrPDB
          Length = 113

 Score = 28.6 bits (62), Expect = 3.5,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 14/107 (13%)

Query: 218 DETINQLEEDSKILV-LRTKKDKTPRYVWYNSGGNLKCIDEEFVKM--WENVQLPQFAEL 274
            ET+ QL     +L    T +   P +       +  CI E F  +   +N  + +   +
Sbjct: 10  KETLTQLSAHRALLTSNETLRLPVPTH-----KNHQLCIGEIFQGLDILKNQTV-RGGTV 63

Query: 275 PRKLQDLGLKPASVDPATIKRQTKRVEVKKKRQRKGKITNTHMTGIL 321
            R  Q+L L    +D     RQ ++   +++R R+         G+L
Sbjct: 64  ERLFQNLSLIKKYID-----RQKEKCGEERRRTRQFLDYLQEFLGVL 105


>2V3C-C nrPDB
          Length = 432

 Score = 28.6 bits (62), Expect = 4.1,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 20/96 (20%)

Query: 218 DETINQLEEDSKILVLRTKKDKTPRYVWYNSGGNLKCIDEEFVKMWENVQLPQFAELPRK 277
           +E +  L E++K L L  KK      V     G                +    A+L R 
Sbjct: 79  EELVKLLGEEAKKLELNPKKQNVILLVGIQGSG----------------KTTTAAKLARY 122

Query: 278 LQDLGLKPASVDPATIKRQTKRVEVKKKRQRKGKIT 313
           +Q  GLKPA +   T     +    ++ +Q   KI 
Sbjct: 123 IQKRGLKPALIAADTY----RPAAYEQLKQLAEKIH 154


>3SS6-A nrPDB
          Length = 394

 Score = 28.6 bits (62), Expect = 4.3,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 19/47 (40%)

Query: 274 LPRKLQDLGLKPASVDPATIKRQTKRVEVKKKRQRKGKITNTHMTGI 320
           L  K  + G     + P TIK + K V   K    +  IT   + G+
Sbjct: 187 LALKAIESGYFDDQIVPITIKERRKEVVFSKDEHPRADITAEKLAGL 233


>2JQV-A nrPDB
          Length = 165

 Score = 28.6 bits (62), Expect = 4.5,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 228 SKILVLRTKKDKTPRYVWYNSGGNLKCIDEEFVKMWENVQLPQFAELPRKLQDLGLKP 285
             + +  ++K K   YVW N        + +F + W  V   +F E  RK+ +    P
Sbjct: 92  EVVRMDNSEKVKVETYVWVNKDDPRMYGEWDFEE-WRVVHAEKFVETFRKMLEWNKNP 148


>4OIC-B nrPDB
          Length = 467

 Score = 28.2 bits (61), Expect = 4.6,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 248 SGGNLKCIDEEFVKMWENVQLPQFAELPRKLQDLGLKPASVDPATI 293
           SG NL  +  EF K WE   +  F+ +  ++     +  +V P T+
Sbjct: 236 SGANLGSV--EFKKKWEQAFVDCFSRVDEEVGGNASRGEAVAPETV 279


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.308    0.127    0.337 

Lambda     K      H
   0.267   0.0397    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,220,918
Number of Sequences: 36641
Number of extensions: 482480
Number of successful extensions: 1433
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 1397
Number of HSP's gapped (non-prelim): 65
length of query: 328
length of database: 10,336,785
effective HSP length: 97
effective length of query: 231
effective length of database: 6,782,608
effective search space: 1566782448
effective search space used: 1566782448
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 59 (27.4 bits)