BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P35718 (212 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 5FJA-G nrPDB 437 e-123 3AYH-B nrPDB 195 1e-50 1GO3-E nrPDB 72 2e-13 2B8K-G nrPDB 64 5e-11 5C3E-G nrPDB 63 9e-11 2PMZ-E nrPDB 52 1e-07 5XON-G nrPDB 52 2e-07 4QIW-E nrPDB 49 1e-06 5OIK-G nrPDB 43 1e-04 3H0G-G nrPDB 41 4e-04 6IJO-5 nrPDB 29 1.1 4GBM-A nrPDB 28 2.7 2E8Y-A nrPDB 28 2.9 3ORY-A nrPDB 27 9.0 >5FJA-G nrPDB Length = 212 Score = 437 bits (1124), Expect = e-123, Method: Compositional matrix adjust. Identities = 212/212 (100%), Positives = 212/212 (100%) Query: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK Sbjct: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60 Query: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCY 120 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCY Sbjct: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCY 120 Query: 121 YTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDVKPKSPKERELEERAQLENEIEG 180 YTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDVKPKSPKERELEERAQLENEIEG Sbjct: 121 YTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDVKPKSPKERELEERAQLENEIEG 180 Query: 181 KNEETPQNEKPPAYALLGSCQTDGMGLVSWWE 212 KNEETPQNEKPPAYALLGSCQTDGMGLVSWWE Sbjct: 181 KNEETPQNEKPPAYALLGSCQTDGMGLVSWWE 212 >3AYH-B nrPDB Length = 203 Score = 195 bits (495), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 95/217 (43%), Positives = 141/217 (64%), Gaps = 19/217 (8%) Query: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60 MF+LS+ +D++ I P F + T A+ +++ K+ANK+I N+GL I +YD L + EG +K Sbjct: 1 MFLLSRFSDIISIHPSNFWKPTKEALAEEIHKKYANKVIQNIGLAICVYDFLKIGEGIIK 60 Query: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCY 120 GDGSSY+NV FR ++F+PF GE++ G I C+ EGI+V+ + FDDIFIP++MLF+ C Sbjct: 61 YGDGSSYMNVVFRLIIFRPFRGEVMLGKIKSCSEEGIRVT-ISFFDDIFIPKDMLFDPCV 119 Query: 121 YTPEESAWIWPMD-----EETKLYFDVNEKIRFRIEREVFVDVKPKSPKERELEERAQLE 175 + P+E AW+W ++ E T+LYFD++E+IRF+IE E FVD+ PK R + Sbjct: 120 FRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQIESEDFVDISPK---------RNKNA 170 Query: 176 NEIEGKNEETPQNEKPPAYALLGSCQTDGMGLVSWWE 212 I G T E Y L+ SC DG+G+ +WW+ Sbjct: 171 TAITG----TEALESVSPYTLIASCSRDGLGIPAWWK 203 >1GO3-E nrPDB Length = 187 Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 79/150 (52%), Gaps = 4/150 (2%) Query: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60 M+ + +IAD+V++PP++F +D + L K+ ++ +VG ++I D+ + EG++ Sbjct: 1 MYKILEIADVVKVPPEEFGKDLKETVKKILMEKYEGRLDKDVGFVLSIVDVKDIGEGKVV 60 Query: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCY 120 GDGS+Y V F +V+ P + E++ G + G V LG D + ++ + Sbjct: 61 HGDGSAYHPVVFETLVYIPEMYELIEGEVVDVVEFGSFVR-LGPLDGLIHVSQIMDDYVS 119 Query: 121 YTPEESAWIWPMDEETKLYFDVNEKIRFRI 150 Y P+ A I +ET ++ + +R RI Sbjct: 120 YDPKREAIIG---KETGKVLEIGDYVRARI 146 >2B8K-G nrPDB Length = 215 Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 11/111 (9%) Query: 44 LCITIYDLLTVEEGQLKPGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSL-- 101 LC+ YD + ++ G++ P DGS+ NV +RAVVFKPF GE+V G + C+ G +V + Sbjct: 46 LCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGP 105 Query: 102 LGIF-DDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIE 151 + +F +PQ++ F P + ++ + +IR +IE Sbjct: 106 MKVFVTKHLMPQDLTFNAGSNPPSY--------QSSEDVITIKSRIRVKIE 148 >5C3E-G nrPDB Length = 179 Score = 62.8 bits (151), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 60/108 (55%), Gaps = 5/108 (4%) Query: 44 LCITIYDLLTVEEGQLKPGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLG 103 LC+ YD + ++ G++ P DGS+ NV +RAVVFKPF GE+V G + C+ G +V + Sbjct: 46 LCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGP 105 Query: 104 IFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIE 151 + +F+ ++++ + + + + E+ + +IR +IE Sbjct: 106 M--KVFVTKHLMPQDLTFNAGSNPPSYQSSEDV---ITIKSRIRVKIE 148 >2PMZ-E nrPDB Length = 180 Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 45/77 (58%) Query: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60 M+ L K +VRIPP++F + ++L ++ KI+ ++GL + I ++ T EEG L Sbjct: 1 MYKLIKARSIVRIPPNEFGKPLNEIALNELRQQYQEKILKDLGLVLAILNVKTSEEGILV 60 Query: 61 PGDGSSYINVTFRAVVF 77 GDG++Y V F + + Sbjct: 61 FGDGATYHEVEFDMITY 77 >5XON-G nrPDB Length = 171 Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 17/157 (10%) Query: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVE--EGQ 58 MF L ++ ++ + P F + +L G +T+ D + ++ +G+ Sbjct: 1 MFFLKDLSLILTLHPSYFGPQMNQYLREKLLTDVEGTCTGQFGYIVTVLDGMNIDVGKGR 60 Query: 59 LKPGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDD-----IFIPQN 113 + PG GS+ V +RAVV+KPF GE+V +S VS +G F D +F+ Sbjct: 61 IIPGSGSAEFEVKYRAVVWKPFKGEVVDAIVS-------NVSPIGFFADVGPLNVFVSTR 113 Query: 114 MLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRI 150 ++ + Y P S + ++E K+R ++ Sbjct: 114 LIPDNLVYNPSNSPPAYMSNDE---LITKGSKVRLKV 147 >4QIW-E nrPDB Length = 190 Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 41/79 (51%) Query: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60 M+ L K+ D+VRIPP F D A L + + G+ + I D+ + EG + Sbjct: 1 MYKLLKVKDVVRIPPRMFTMDPKEAAKIVLRETYEGIYDRDEGVVLAILDVEEISEGVIV 60 Query: 61 PGDGSSYINVTFRAVVFKP 79 PGDG++Y F +V++P Sbjct: 61 PGDGATYHEAIFNVLVWEP 79 >5OIK-G nrPDB Length = 172 Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/153 (23%), Positives = 66/153 (43%), Gaps = 23/153 (15%) Query: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60 MF + + + P F + ++ + +L + G I + + + G ++ Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60 Query: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDI----------FI 110 PG G V ++A+VF+PF GE+V ++ +V+ +G+F +I I Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVT-------QVNKVGLFTEIGPMSCFISRHSI 113 Query: 111 PQNMLFE-----GCYYTPEESAWIWPMDEETKL 138 P M F+ CY T +E I D+E +L Sbjct: 114 PSEMEFDPNSNPPCYKTMDEDIVIQ-QDDEIRL 145 >3H0G-G nrPDB Length = 172 Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 3/87 (3%) Query: 44 LCITIYDLLTVEEGQLKPGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGI--KVSL 101 +C+ + + +++G++ PG G + V +RAV+++PF GE+V ++ G + Sbjct: 47 ICVLDSNTIDIDKGRVVPGQGFAEFEVKYRAVLWRPFRGEVVDAIVTTVNKMGFFANIGP 106 Query: 102 LGIF-DDIFIPQNMLFEGCYYTPEESA 127 L +F +P +M F+ P S Sbjct: 107 LNVFVSSHLVPPDMKFDPTANPPNYSG 133 >6IJO-5 nrPDB Length = 274 Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust. Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 4/48 (8%) Query: 20 RDTISAITHQLNNKFANKIIPNVGLCITIYDL----LTVEEGQLKPGD 63 + ++A++ L+N F N I+ N+G C + + LT+ L PG Sbjct: 226 KGPLAALSAHLSNPFGNNILKNIGTCTVPHSVDVQGLTIPLTCLWPGS 273 >4GBM-A nrPDB Length = 323 Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust. Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 8/71 (11%) Query: 67 YINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEES 126 ++NV F + +P+ G+ +TG G+ + L I D F+ N + E + Sbjct: 238 FLNVPFEPELLQPYQGDRMTG--------GVHAASLSISDPNFLKHNTIDESLADKWKTI 289 Query: 127 AWIWPMDEETK 137 +P+ ET+ Sbjct: 290 QLPYPLKSETQ 300 >2E8Y-A nrPDB Length = 718 Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust. Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 60 KPGDGSSYIN-VTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFD 106 KP +G+ N + + + F+ + V W+ + +G + LLGI D Sbjct: 365 KPSNGTGVGNDIASERRMARKFIADCVVYWLEEYNVDGFRFDLLGILD 412 >3ORY-A nrPDB Length = 363 Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%) Query: 157 DVKPKSPKERELEERAQLENEIEGKNEETPQN---EKPPAYALLGSCQTDGM 205 D KP K RE+E R ++ E K EE Q+ E YA++ + T+ M Sbjct: 94 DGKPPELKAREIERRKAVKEEAAKKYEEAVQSGDLELARRYAMMSAKLTEEM 145 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 5FJA-G nrPDB 307 2e-84 3AYH-B nrPDB 262 7e-71 2B8K-G nrPDB 172 9e-44 5C3E-G nrPDB 171 2e-43 5XON-G nrPDB 164 2e-41 1GO3-E nrPDB 163 4e-41 3H0G-G nrPDB 152 9e-38 5OIK-G nrPDB 151 1e-37 4QIW-E nrPDB 132 1e-31 2PMZ-E nrPDB 124 4e-29 Sequences not found previously or not previously below threshold: 2Z0S-A nrPDB 31 0.30 2RF4-A nrPDB 31 0.42 5N5Z-G nrPDB 30 0.85 2BA0-A nrPDB 29 1.2 2DVU-A nrPDB 29 1.4 2JEB-I nrPDB 29 2.3 3LLI-A nrPDB 28 2.6 6H58-y nrPDB 28 2.8 5BSW-A nrPDB 28 3.2 1PI6-A nrPDB 28 3.6 4P2L-A nrPDB 28 3.7 5C9S-B nrPDB 27 4.1 3IYF-A nrPDB 27 4.2 1DXH-A nrPDB 27 4.6 3RUW-A nrPDB 27 4.8 5O8D-A nrPDB 27 7.1 5LM9-A nrPDB 27 7.1 5MS0-M nrPDB 27 7.6 5LM7-A nrPDB 26 9.4 CONVERGED! >5FJA-G nrPDB Length = 212 Score = 307 bits (787), Expect = 2e-84, Method: Composition-based stats. Identities = 212/212 (100%), Positives = 212/212 (100%) Query: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK Sbjct: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60 Query: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCY 120 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCY Sbjct: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCY 120 Query: 121 YTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDVKPKSPKERELEERAQLENEIEG 180 YTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDVKPKSPKERELEERAQLENEIEG Sbjct: 121 YTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDVKPKSPKERELEERAQLENEIEG 180 Query: 181 KNEETPQNEKPPAYALLGSCQTDGMGLVSWWE 212 KNEETPQNEKPPAYALLGSCQTDGMGLVSWWE Sbjct: 181 KNEETPQNEKPPAYALLGSCQTDGMGLVSWWE 212 >3AYH-B nrPDB Length = 203 Score = 262 bits (670), Expect = 7e-71, Method: Composition-based stats. Identities = 95/217 (43%), Positives = 141/217 (64%), Gaps = 19/217 (8%) Query: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60 MF+LS+ +D++ I P F + T A+ +++ K+ANK+I N+GL I +YD L + EG +K Sbjct: 1 MFLLSRFSDIISIHPSNFWKPTKEALAEEIHKKYANKVIQNIGLAICVYDFLKIGEGIIK 60 Query: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCY 120 GDGSSY+NV FR ++F+PF GE++ G I C+ EGI+V+ + FDDIFIP++MLF+ C Sbjct: 61 YGDGSSYMNVVFRLIIFRPFRGEVMLGKIKSCSEEGIRVT-ISFFDDIFIPKDMLFDPCV 119 Query: 121 YTPEESAWIWPMD-----EETKLYFDVNEKIRFRIEREVFVDVKPKSPKERELEERAQLE 175 + P+E AW+W ++ E T+LYFD++E+IRF+IE E FVD+ PK R + Sbjct: 120 FRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQIESEDFVDISPK---------RNKNA 170 Query: 176 NEIEGKNEETPQNEKPPAYALLGSCQTDGMGLVSWWE 212 I G T E Y L+ SC DG+G+ +WW+ Sbjct: 171 TAITG----TEALESVSPYTLIASCSRDGLGIPAWWK 203 >2B8K-G nrPDB Length = 215 Score = 172 bits (436), Expect = 9e-44, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 74/153 (48%), Gaps = 7/153 (4%) Query: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVG--LCITIYDLLTVEEGQ 58 MF + ++ + + P F + +L + G LC+ YD + ++ G+ Sbjct: 1 MFFIKDLSLNITLHPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGR 60 Query: 59 LKPGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEG 118 + P DGS+ NV +RAVVFKPF GE+V G + C+ G +V + + +F+ ++++ + Sbjct: 61 ILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPM--KVFVTKHLMPQD 118 Query: 119 CYYTPEESAWIWPMDEETKLYFDVNEKIRFRIE 151 + + + E+ + +IR +IE Sbjct: 119 LTFNAGSNPPSYQSSED---VITIKSRIRVKIE 148 >5C3E-G nrPDB Length = 179 Score = 171 bits (432), Expect = 2e-43, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 74/153 (48%), Gaps = 7/153 (4%) Query: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVG--LCITIYDLLTVEEGQ 58 MF + ++ + + P F + +L + G LC+ YD + ++ G+ Sbjct: 1 MFFIKDLSLNITLHPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGR 60 Query: 59 LKPGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEG 118 + P DGS+ NV +RAVVFKPF GE+V G + C+ G +V + + +F+ ++++ + Sbjct: 61 ILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPM--KVFVTKHLMPQD 118 Query: 119 CYYTPEESAWIWPMDEETKLYFDVNEKIRFRIE 151 + + + E+ + +IR +IE Sbjct: 119 LTFNAGSNPPSYQSSED---VITIKSRIRVKIE 148 >5XON-G nrPDB Length = 171 Score = 164 bits (415), Expect = 2e-41, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 68/152 (44%), Gaps = 7/152 (4%) Query: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTV--EEGQ 58 MF L ++ ++ + P F + +L G +T+ D + + +G+ Sbjct: 1 MFFLKDLSLILTLHPSYFGPQMNQYLREKLLTDVEGTCTGQFGYIVTVLDGMNIDVGKGR 60 Query: 59 LKPGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEG 118 + PG GS+ V +RAVV+KPF GE+V +S + G + + ++F+ ++ + Sbjct: 61 IIPGSGSAEFEVKYRAVVWKPFKGEVVDAIVSNVSPIGFFADVGPL--NVFVSTRLIPDN 118 Query: 119 CYYTPEESAWIWPMDEETKLYFDVNEKIRFRI 150 Y P S + ++E K+R ++ Sbjct: 119 LVYNPSNSPPAYMSNDE---LITKGSKVRLKV 147 >1GO3-E nrPDB Length = 187 Score = 163 bits (413), Expect = 4e-41, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 92/187 (49%), Gaps = 9/187 (4%) Query: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60 M+ + +IAD+V++PP++F +D + L K+ ++ +VG ++I D+ + EG++ Sbjct: 1 MYKILEIADVVKVPPEEFGKDLKETVKKILMEKYEGRLDKDVGFVLSIVDVKDIGEGKVV 60 Query: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCY 120 GDGS+Y V F +V+ P + E++ G + G V LG D + ++ + Sbjct: 61 HGDGSAYHPVVFETLVYIPEMYELIEGEVVDVVEFGSFVR-LGPLDGLIHVSQIMDDYVS 119 Query: 121 YTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDVKPKSPKERELEERAQLENEIEG 180 Y P+ A I +ET ++ + +R RI V + K+ ++R + + G Sbjct: 120 YDPKREAIIG---KETGKVLEIGDYVRARI-----VAISLKAERKRGSKIALTMRQPYLG 171 Query: 181 KNEETPQ 187 K E + Sbjct: 172 KLEWIEE 178 >3H0G-G nrPDB Length = 172 Score = 152 bits (384), Expect = 9e-38, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 61/154 (39%), Gaps = 13/154 (8%) Query: 2 FILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYD--LLTVEEGQL 59 F L +++ + + P F + +L G I + D + +++G++ Sbjct: 3 FFLKELSLTISLHPSYFGPRMQDYLKAKLLADVEGTCSGQYGYIICVLDSNTIDIDKGRV 62 Query: 60 KPGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGI--KVSLLGIF-DDIFIPQNMLF 116 PG G + V +RAV+++PF GE+V ++ G + L +F +P +M F Sbjct: 63 VPGQGFAEFEVKYRAVLWRPFRGEVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPPDMKF 122 Query: 117 EGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRI 150 + P S + +R +I Sbjct: 123 DPTANPPNYSG--------EDQVIEKGSNVRLKI 148 >5OIK-G nrPDB Length = 172 Score = 151 bits (382), Expect = 1e-37, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 62/153 (40%), Gaps = 9/153 (5%) Query: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60 MF + + + P F + ++ + +L + G I + + + G ++ Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60 Query: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLG---IFDDIFIPQNMLFE 117 PG G V ++A+VF+PF GE+V +++ G+ + IP M F+ Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120 Query: 118 GCYYTPEESAWIWPMDEETKLYFDVNEKIRFRI 150 P MDE+ +++IR +I Sbjct: 121 PNSNPPCYK----TMDEDI--VIQQDDEIRLKI 147 >4QIW-E nrPDB Length = 190 Score = 132 bits (332), Expect = 1e-31, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 9/167 (5%) Query: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60 M+ L K+ D+VRIPP F D A L + + G+ + I D+ + EG + Sbjct: 1 MYKLLKVKDVVRIPPRMFTMDPKEAAKIVLRETYEGIYDRDEGVVLAILDVEEISEGVIV 60 Query: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCY 120 PGDG++Y F +V++P E+V G + + G + +G D + ++ + Sbjct: 61 PGDGATYHEAIFNVLVWEPRNQEVVEGEVVEMMPYGAFIR-IGPMDGLVHISQLMDDYVV 119 Query: 121 YTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDVKPKSPKERE 167 + + +I +ET + + +R RI + V KS RE Sbjct: 120 FDEKNRQFIG---KETNRVLKLGDYVRARI-----IGVSVKSRVIRE 158 >2PMZ-E nrPDB Length = 180 Score = 124 bits (310), Expect = 4e-29, Method: Composition-based stats. Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 4/150 (2%) Query: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60 M+ L K +VRIPP++F + ++L ++ KI+ ++GL + I ++ T EEG L Sbjct: 1 MYKLIKARSIVRIPPNEFGKPLNEIALNELRQQYQEKILKDLGLVLAILNVKTSEEGILV 60 Query: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCY 120 GDG++Y V F + + P + E+V G + + GI V+ LG D + + + Sbjct: 61 FGDGATYHEVEFDMITYVPVVQEVVEGEVLQVDNYGIFVN-LGPMDGLVHISQITDDTLK 119 Query: 121 YTPEESAWIWPMDEETKLYFDVNEKIRFRI 150 Y E++K +K+R R+ Sbjct: 120 YDNVRGIIFG---EKSKKVIQKGDKVRARV 146 >2Z0S-A nrPDB Length = 235 Score = 31.3 bits (69), Expect = 0.30, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 11/89 (12%) Query: 62 GDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYY 121 GDG V + + + P G++V G I V + + + Q+ L + Sbjct: 48 GDGGGRAFVKLKEI-YVPQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRP--F 104 Query: 122 TPEESAWIWPMDEETKLYFDVNEKIRFRI 150 P ++ + V + I+ ++ Sbjct: 105 NP--------AVDDMQSLLKVGDYIKAKV 125 >2RF4-A nrPDB Length = 214 Score = 30.9 bits (68), Expect = 0.42, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 12/95 (12%) Query: 7 IADLVRIPPDQFHRDTISAITHQLN-------NKFANKIIPNVGLCITIYDLLTVEEG-- 57 IA V + P + LN NK ++ GL I D L+ E+ Sbjct: 43 IALYVSLAPMYLENPLQGVMKQHLNPLVMKYNNKVGGVVLGYEGLKILDADPLSKEDTSE 102 Query: 58 ---QLKPGDGSSYINVTFRAVVFKPFLGEIVTGWI 89 ++ P + V++P +G+++ G+I Sbjct: 103 KLIKITPDTPFGFTWCHVNLYVWQPQVGDVLEGYI 137 >5N5Z-G nrPDB Length = 326 Score = 29.7 bits (65), Expect = 0.85, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 12/95 (12%) Query: 7 IADLVRIPPDQFHRDTISAITHQLN-------NKFANKIIPNVGLCITIYDLLTVEEG-- 57 IA V + P + LN NK ++ GL I D L+ E+ Sbjct: 43 IALYVSLAPMYLENPLQGVMKQHLNPLVMKYNNKVGGVVLGYEGLKILDADPLSKEDTSE 102 Query: 58 ---QLKPGDGSSYINVTFRAVVFKPFLGEIVTGWI 89 ++ P + V++P +G+++ G+I Sbjct: 103 KLIKITPDTPFGFTWCHVNLYVWQPQVGDVLEGYI 137 >2BA0-A nrPDB Length = 229 Score = 29.3 bits (64), Expect = 1.2, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 18/95 (18%) Query: 77 FKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEET 136 + P +G++V G I + A G V + + F PE +++ Sbjct: 53 YTPSVGDVVIGIIREVAANGWAVDIYSPYQA--------FLPVSENPEMKP-----NKKP 99 Query: 137 KLYFDVNEKIRFRIEREVFVDVKPKSPKERELEER 171 D+ + I ++ +++ PK +++R Sbjct: 100 NEVLDIGDAIIAKV-----LNIDPKMKVTLTMKDR 129 >2DVU-A nrPDB Length = 327 Score = 28.9 bits (63), Expect = 1.4, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 22/48 (45%), Gaps = 8/48 (16%) Query: 37 KIIPNVGLCITIYDLLTVEEGQLKPGDGSSYINVTFRAVVFKPFLGEI 84 + + ++G + + G + GDG + + + ++PF GE+ Sbjct: 115 RCVNDLGFVGALVN------GFSQEGDGQT--PLYYDLPQYRPFWGEV 154 >2JEB-I nrPDB Length = 251 Score = 28.6 bits (62), Expect = 2.3, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 39/113 (34%), Gaps = 22/113 (19%) Query: 42 VGLCITIYDLLTVEEGQLKPGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSL 101 + ++D+ + ++ P +GS Y P + +IV G + G V + Sbjct: 46 YSTVVGLFDVKDTQF-EVIPLEGSFYY----------PKINDIVIGLVEDVEIYGWVVDI 94 Query: 102 LGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREV 154 + N+L + E+ + Y DV + + RIE Sbjct: 95 KAPYKAYLPASNLL-----------GRSINVGEDLRRYLDVGDYVIARIENFD 136 >3LLI-A nrPDB Length = 261 Score = 28.2 bits (61), Expect = 2.6, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 2/54 (3%) Query: 159 KPKSPKERELEERAQLENEIEGKNEETPQNEKP--PAYALLGSCQTDGMGLVSW 210 P + ++ + G E PQ K P L +C + + + W Sbjct: 184 SPNAAVLWLWSSHNRVNARLAGAPSEDPQFPKVQWPPRELCSACHNERLDVPVW 237 >6H58-y nrPDB Length = 557 Score = 28.2 bits (61), Expect = 2.8, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 3/70 (4%) Query: 81 LGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYF 140 G+ V G I T GI + L G D + ++ + EE+ + +E Sbjct: 363 KGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAG---EEAVREYKKGDEIAAVV 419 Query: 141 DVNEKIRFRI 150 + R RI Sbjct: 420 LQVDAERERI 429 >5BSW-A nrPDB Length = 541 Score = 27.8 bits (60), Expect = 3.2, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%) Query: 132 MDEETKLYFDVNEKIRFRIEREVFVDVKPKSPKERELEE--RAQLE 175 ++E K + RI+R FVD PKSP + L + RA+L Sbjct: 491 TEDEVKDFISKQVIFYKRIKRVFFVDAIPKSPSGKILRKDLRAKLA 536 >1PI6-A nrPDB Length = 615 Score = 27.8 bits (60), Expect = 3.6, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 47/139 (33%), Gaps = 12/139 (8%) Query: 73 RAVVFKPFLGEIVT-------GWISKCTAEGIKVSLL-GIFDDIFIPQNMLFEGCYYTPE 124 ++ + F G+I+ G + + V L G +F ++ TP Sbjct: 428 DLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPL 487 Query: 125 ESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDVKPKSPKERELEERAQLENEIEGKNEE 184 + + ++ Y + + +I + D++ + K R N I K E Sbjct: 488 RAKPSYISISPSETYIAAGD-VMGKI---LLYDLQSREVKTSRWAFRTSKINAISWKPAE 543 Query: 185 TPQNEKPPAYALLGSCQTD 203 NE+ L+ + D Sbjct: 544 KGANEEEIEEDLVATGSLD 562 >4P2L-A nrPDB Length = 506 Score = 27.8 bits (60), Expect = 3.7, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 2/54 (3%) Query: 159 KPKSPKERELEERAQLENEIEGKNEETPQNEKP--PAYALLGSCQTDGMGLVSW 210 P + ++ + G E PQ K P L +C + G+ W Sbjct: 429 SPSNAVLWLWTSHNRVNARLSGALSEDPQFPKVQWPPRELCSACHNEVNGVPLW 482 >5C9S-B nrPDB Length = 572 Score = 27.4 bits (59), Expect = 4.1, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 6/82 (7%) Query: 81 LGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYF 140 GEIV G + +GI V L + F+P + L + Y E + PM Sbjct: 19 QGEIVDGIVKNVNDKGIFV-YLSRKVEAFVPVSKLSD--SYLKEWKKFYKPMQYVLGKVV 75 Query: 141 DVNEKIRFRI---EREVFVDVK 159 +E R + E E+ D+K Sbjct: 76 TCDEDSRISLTLRESEINGDLK 97 >3IYF-A nrPDB Length = 521 Score = 27.4 bits (59), Expect = 4.2, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 6/61 (9%) Query: 14 PPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLKPGDGSSYINVTFR 73 P I T + + A + VG+ T+E+G++ G GS+ + ++ + Sbjct: 339 HPKAVTM-LIRGTTEHVIEEVARAVDDAVGVVGC-----TIEDGRIVSGGGSTEVELSMK 392 Query: 74 A 74 Sbjct: 393 L 393 >1DXH-A nrPDB Length = 335 Score = 27.4 bits (59), Expect = 4.6, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 5/62 (8%) Query: 72 FRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWP 131 + A+ ++ F EIV V + D + P ML + + Sbjct: 101 YDAIEYRGFKQEIVEELAKFAG-----VPVFNGLTDEYHPTQMLADVLTMREHSDKPLHD 155 Query: 132 MD 133 + Sbjct: 156 IS 157 >3RUW-A nrPDB Length = 543 Score = 27.4 bits (59), Expect = 4.8, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 6/61 (9%) Query: 14 PPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLKPGDGSSYINVTFR 73 P I T + + A + VG+ T+E+G++ G GS+ + ++ + Sbjct: 361 HPKAVTM-LIRGTTEHVIEEVARAVDDAVGVVGC-----TIEDGRIVSGGGSTEVELSMK 414 Query: 74 A 74 Sbjct: 415 L 415 >5O8D-A nrPDB Length = 484 Score = 26.6 bits (57), Expect = 7.1, Method: Composition-based stats. Identities = 7/24 (29%), Positives = 10/24 (41%) Query: 104 IFDDIFIPQNMLFEGCYYTPEESA 127 D+I I + + CYY P Sbjct: 318 FLDEILIWKEISDNFCYYNPGYDG 341 >5LM9-A nrPDB Length = 329 Score = 26.6 bits (57), Expect = 7.1, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 77 FKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEE-SAWIWPMDEE 135 F+ GEI+TG + K + I + L + + + ++ML + + ++ + E Sbjct: 33 FREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPE 92 Query: 136 TK 137 + Sbjct: 93 AR 94 >5MS0-M nrPDB Length = 497 Score = 26.6 bits (57), Expect = 7.6, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 77 FKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEE-SAWIWPMDEE 135 F+ GEI+TG + K + I + L + + + ++ML + + ++ + E Sbjct: 132 FREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPE 191 Query: 136 TK 137 + Sbjct: 192 AR 193 >5LM7-A nrPDB Length = 428 Score = 26.3 bits (56), Expect = 9.4, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 77 FKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEE-SAWIWPMDEE 135 F+ GEI+TG + K + I + L + + + ++ML + + ++ + E Sbjct: 132 FREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPE 191 Query: 136 TK 137 + Sbjct: 192 AR 193 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.312 0.127 0.331 Lambda K H 0.267 0.0388 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 7,440,223 Number of Sequences: 36641 Number of extensions: 272063 Number of successful extensions: 872 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 23 Number of HSP's that attempted gapping in prelim test: 824 Number of HSP's gapped (non-prelim): 52 length of query: 212 length of database: 10,336,785 effective HSP length: 93 effective length of query: 119 effective length of database: 6,929,172 effective search space: 824571468 effective search space used: 824571468 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.4 bits) S2: 57 (26.6 bits)