BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= P35718
(212 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
5FJA-G nrPDB 437 e-123
3AYH-B nrPDB 195 1e-50
1GO3-E nrPDB 72 2e-13
2B8K-G nrPDB 64 5e-11
5C3E-G nrPDB 63 9e-11
2PMZ-E nrPDB 52 1e-07
5XON-G nrPDB 52 2e-07
4QIW-E nrPDB 49 1e-06
5OIK-G nrPDB 43 1e-04
3H0G-G nrPDB 41 4e-04
6IJO-5 nrPDB 29 1.1
4GBM-A nrPDB 28 2.7
2E8Y-A nrPDB 28 2.9
3ORY-A nrPDB 27 9.0
>5FJA-G nrPDB
Length = 212
Score = 437 bits (1124), Expect = e-123, Method: Compositional matrix adjust.
Identities = 212/212 (100%), Positives = 212/212 (100%)
Query: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60
MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK
Sbjct: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60
Query: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCY 120
PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCY
Sbjct: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCY 120
Query: 121 YTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDVKPKSPKERELEERAQLENEIEG 180
YTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDVKPKSPKERELEERAQLENEIEG
Sbjct: 121 YTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDVKPKSPKERELEERAQLENEIEG 180
Query: 181 KNEETPQNEKPPAYALLGSCQTDGMGLVSWWE 212
KNEETPQNEKPPAYALLGSCQTDGMGLVSWWE
Sbjct: 181 KNEETPQNEKPPAYALLGSCQTDGMGLVSWWE 212
>3AYH-B nrPDB
Length = 203
Score = 195 bits (495), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 95/217 (43%), Positives = 141/217 (64%), Gaps = 19/217 (8%)
Query: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60
MF+LS+ +D++ I P F + T A+ +++ K+ANK+I N+GL I +YD L + EG +K
Sbjct: 1 MFLLSRFSDIISIHPSNFWKPTKEALAEEIHKKYANKVIQNIGLAICVYDFLKIGEGIIK 60
Query: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCY 120
GDGSSY+NV FR ++F+PF GE++ G I C+ EGI+V+ + FDDIFIP++MLF+ C
Sbjct: 61 YGDGSSYMNVVFRLIIFRPFRGEVMLGKIKSCSEEGIRVT-ISFFDDIFIPKDMLFDPCV 119
Query: 121 YTPEESAWIWPMD-----EETKLYFDVNEKIRFRIEREVFVDVKPKSPKERELEERAQLE 175
+ P+E AW+W ++ E T+LYFD++E+IRF+IE E FVD+ PK R +
Sbjct: 120 FRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQIESEDFVDISPK---------RNKNA 170
Query: 176 NEIEGKNEETPQNEKPPAYALLGSCQTDGMGLVSWWE 212
I G T E Y L+ SC DG+G+ +WW+
Sbjct: 171 TAITG----TEALESVSPYTLIASCSRDGLGIPAWWK 203
>1GO3-E nrPDB
Length = 187
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 79/150 (52%), Gaps = 4/150 (2%)
Query: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60
M+ + +IAD+V++PP++F +D + L K+ ++ +VG ++I D+ + EG++
Sbjct: 1 MYKILEIADVVKVPPEEFGKDLKETVKKILMEKYEGRLDKDVGFVLSIVDVKDIGEGKVV 60
Query: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCY 120
GDGS+Y V F +V+ P + E++ G + G V LG D + ++ +
Sbjct: 61 HGDGSAYHPVVFETLVYIPEMYELIEGEVVDVVEFGSFVR-LGPLDGLIHVSQIMDDYVS 119
Query: 121 YTPEESAWIWPMDEETKLYFDVNEKIRFRI 150
Y P+ A I +ET ++ + +R RI
Sbjct: 120 YDPKREAIIG---KETGKVLEIGDYVRARI 146
>2B8K-G nrPDB
Length = 215
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 11/111 (9%)
Query: 44 LCITIYDLLTVEEGQLKPGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSL-- 101
LC+ YD + ++ G++ P DGS+ NV +RAVVFKPF GE+V G + C+ G +V +
Sbjct: 46 LCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGP 105
Query: 102 LGIF-DDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIE 151
+ +F +PQ++ F P + ++ + +IR +IE
Sbjct: 106 MKVFVTKHLMPQDLTFNAGSNPPSY--------QSSEDVITIKSRIRVKIE 148
>5C3E-G nrPDB
Length = 179
Score = 62.8 bits (151), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 60/108 (55%), Gaps = 5/108 (4%)
Query: 44 LCITIYDLLTVEEGQLKPGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLG 103
LC+ YD + ++ G++ P DGS+ NV +RAVVFKPF GE+V G + C+ G +V +
Sbjct: 46 LCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGP 105
Query: 104 IFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIE 151
+ +F+ ++++ + + + + E+ + +IR +IE
Sbjct: 106 M--KVFVTKHLMPQDLTFNAGSNPPSYQSSEDV---ITIKSRIRVKIE 148
>2PMZ-E nrPDB
Length = 180
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%)
Query: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60
M+ L K +VRIPP++F + ++L ++ KI+ ++GL + I ++ T EEG L
Sbjct: 1 MYKLIKARSIVRIPPNEFGKPLNEIALNELRQQYQEKILKDLGLVLAILNVKTSEEGILV 60
Query: 61 PGDGSSYINVTFRAVVF 77
GDG++Y V F + +
Sbjct: 61 FGDGATYHEVEFDMITY 77
>5XON-G nrPDB
Length = 171
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 17/157 (10%)
Query: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVE--EGQ 58
MF L ++ ++ + P F + +L G +T+ D + ++ +G+
Sbjct: 1 MFFLKDLSLILTLHPSYFGPQMNQYLREKLLTDVEGTCTGQFGYIVTVLDGMNIDVGKGR 60
Query: 59 LKPGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDD-----IFIPQN 113
+ PG GS+ V +RAVV+KPF GE+V +S VS +G F D +F+
Sbjct: 61 IIPGSGSAEFEVKYRAVVWKPFKGEVVDAIVS-------NVSPIGFFADVGPLNVFVSTR 113
Query: 114 MLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRI 150
++ + Y P S + ++E K+R ++
Sbjct: 114 LIPDNLVYNPSNSPPAYMSNDE---LITKGSKVRLKV 147
>4QIW-E nrPDB
Length = 190
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%)
Query: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60
M+ L K+ D+VRIPP F D A L + + G+ + I D+ + EG +
Sbjct: 1 MYKLLKVKDVVRIPPRMFTMDPKEAAKIVLRETYEGIYDRDEGVVLAILDVEEISEGVIV 60
Query: 61 PGDGSSYINVTFRAVVFKP 79
PGDG++Y F +V++P
Sbjct: 61 PGDGATYHEAIFNVLVWEP 79
>5OIK-G nrPDB
Length = 172
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 66/153 (43%), Gaps = 23/153 (15%)
Query: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60
MF + + + P F + ++ + +L + G I + + + G ++
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDI----------FI 110
PG G V ++A+VF+PF GE+V ++ +V+ +G+F +I I
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVT-------QVNKVGLFTEIGPMSCFISRHSI 113
Query: 111 PQNMLFE-----GCYYTPEESAWIWPMDEETKL 138
P M F+ CY T +E I D+E +L
Sbjct: 114 PSEMEFDPNSNPPCYKTMDEDIVIQ-QDDEIRL 145
>3H0G-G nrPDB
Length = 172
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 44 LCITIYDLLTVEEGQLKPGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGI--KVSL 101
+C+ + + +++G++ PG G + V +RAV+++PF GE+V ++ G +
Sbjct: 47 ICVLDSNTIDIDKGRVVPGQGFAEFEVKYRAVLWRPFRGEVVDAIVTTVNKMGFFANIGP 106
Query: 102 LGIF-DDIFIPQNMLFEGCYYTPEESA 127
L +F +P +M F+ P S
Sbjct: 107 LNVFVSSHLVPPDMKFDPTANPPNYSG 133
>6IJO-5 nrPDB
Length = 274
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 20 RDTISAITHQLNNKFANKIIPNVGLCITIYDL----LTVEEGQLKPGD 63
+ ++A++ L+N F N I+ N+G C + + LT+ L PG
Sbjct: 226 KGPLAALSAHLSNPFGNNILKNIGTCTVPHSVDVQGLTIPLTCLWPGS 273
>4GBM-A nrPDB
Length = 323
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 67 YINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEES 126
++NV F + +P+ G+ +TG G+ + L I D F+ N + E +
Sbjct: 238 FLNVPFEPELLQPYQGDRMTG--------GVHAASLSISDPNFLKHNTIDESLADKWKTI 289
Query: 127 AWIWPMDEETK 137
+P+ ET+
Sbjct: 290 QLPYPLKSETQ 300
>2E8Y-A nrPDB
Length = 718
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 60 KPGDGSSYIN-VTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFD 106
KP +G+ N + + + F+ + V W+ + +G + LLGI D
Sbjct: 365 KPSNGTGVGNDIASERRMARKFIADCVVYWLEEYNVDGFRFDLLGILD 412
>3ORY-A nrPDB
Length = 363
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 157 DVKPKSPKERELEERAQLENEIEGKNEETPQN---EKPPAYALLGSCQTDGM 205
D KP K RE+E R ++ E K EE Q+ E YA++ + T+ M
Sbjct: 94 DGKPPELKAREIERRKAVKEEAAKKYEEAVQSGDLELARRYAMMSAKLTEEM 145
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
5FJA-G nrPDB 307 2e-84
3AYH-B nrPDB 262 7e-71
2B8K-G nrPDB 172 9e-44
5C3E-G nrPDB 171 2e-43
5XON-G nrPDB 164 2e-41
1GO3-E nrPDB 163 4e-41
3H0G-G nrPDB 152 9e-38
5OIK-G nrPDB 151 1e-37
4QIW-E nrPDB 132 1e-31
2PMZ-E nrPDB 124 4e-29
Sequences not found previously or not previously below threshold:
2Z0S-A nrPDB 31 0.30
2RF4-A nrPDB 31 0.42
5N5Z-G nrPDB 30 0.85
2BA0-A nrPDB 29 1.2
2DVU-A nrPDB 29 1.4
2JEB-I nrPDB 29 2.3
3LLI-A nrPDB 28 2.6
6H58-y nrPDB 28 2.8
5BSW-A nrPDB 28 3.2
1PI6-A nrPDB 28 3.6
4P2L-A nrPDB 28 3.7
5C9S-B nrPDB 27 4.1
3IYF-A nrPDB 27 4.2
1DXH-A nrPDB 27 4.6
3RUW-A nrPDB 27 4.8
5O8D-A nrPDB 27 7.1
5LM9-A nrPDB 27 7.1
5MS0-M nrPDB 27 7.6
5LM7-A nrPDB 26 9.4
CONVERGED!
>5FJA-G nrPDB
Length = 212
Score = 307 bits (787), Expect = 2e-84, Method: Composition-based stats.
Identities = 212/212 (100%), Positives = 212/212 (100%)
Query: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60
MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK
Sbjct: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60
Query: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCY 120
PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCY
Sbjct: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCY 120
Query: 121 YTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDVKPKSPKERELEERAQLENEIEG 180
YTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDVKPKSPKERELEERAQLENEIEG
Sbjct: 121 YTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDVKPKSPKERELEERAQLENEIEG 180
Query: 181 KNEETPQNEKPPAYALLGSCQTDGMGLVSWWE 212
KNEETPQNEKPPAYALLGSCQTDGMGLVSWWE
Sbjct: 181 KNEETPQNEKPPAYALLGSCQTDGMGLVSWWE 212
>3AYH-B nrPDB
Length = 203
Score = 262 bits (670), Expect = 7e-71, Method: Composition-based stats.
Identities = 95/217 (43%), Positives = 141/217 (64%), Gaps = 19/217 (8%)
Query: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60
MF+LS+ +D++ I P F + T A+ +++ K+ANK+I N+GL I +YD L + EG +K
Sbjct: 1 MFLLSRFSDIISIHPSNFWKPTKEALAEEIHKKYANKVIQNIGLAICVYDFLKIGEGIIK 60
Query: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCY 120
GDGSSY+NV FR ++F+PF GE++ G I C+ EGI+V+ + FDDIFIP++MLF+ C
Sbjct: 61 YGDGSSYMNVVFRLIIFRPFRGEVMLGKIKSCSEEGIRVT-ISFFDDIFIPKDMLFDPCV 119
Query: 121 YTPEESAWIWPMD-----EETKLYFDVNEKIRFRIEREVFVDVKPKSPKERELEERAQLE 175
+ P+E AW+W ++ E T+LYFD++E+IRF+IE E FVD+ PK R +
Sbjct: 120 FRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQIESEDFVDISPK---------RNKNA 170
Query: 176 NEIEGKNEETPQNEKPPAYALLGSCQTDGMGLVSWWE 212
I G T E Y L+ SC DG+G+ +WW+
Sbjct: 171 TAITG----TEALESVSPYTLIASCSRDGLGIPAWWK 203
>2B8K-G nrPDB
Length = 215
Score = 172 bits (436), Expect = 9e-44, Method: Composition-based stats.
Identities = 38/153 (24%), Positives = 74/153 (48%), Gaps = 7/153 (4%)
Query: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVG--LCITIYDLLTVEEGQ 58
MF + ++ + + P F + +L + G LC+ YD + ++ G+
Sbjct: 1 MFFIKDLSLNITLHPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGR 60
Query: 59 LKPGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEG 118
+ P DGS+ NV +RAVVFKPF GE+V G + C+ G +V + + +F+ ++++ +
Sbjct: 61 ILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPM--KVFVTKHLMPQD 118
Query: 119 CYYTPEESAWIWPMDEETKLYFDVNEKIRFRIE 151
+ + + E+ + +IR +IE
Sbjct: 119 LTFNAGSNPPSYQSSED---VITIKSRIRVKIE 148
>5C3E-G nrPDB
Length = 179
Score = 171 bits (432), Expect = 2e-43, Method: Composition-based stats.
Identities = 38/153 (24%), Positives = 74/153 (48%), Gaps = 7/153 (4%)
Query: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVG--LCITIYDLLTVEEGQ 58
MF + ++ + + P F + +L + G LC+ YD + ++ G+
Sbjct: 1 MFFIKDLSLNITLHPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGR 60
Query: 59 LKPGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEG 118
+ P DGS+ NV +RAVVFKPF GE+V G + C+ G +V + + +F+ ++++ +
Sbjct: 61 ILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPM--KVFVTKHLMPQD 118
Query: 119 CYYTPEESAWIWPMDEETKLYFDVNEKIRFRIE 151
+ + + E+ + +IR +IE
Sbjct: 119 LTFNAGSNPPSYQSSED---VITIKSRIRVKIE 148
>5XON-G nrPDB
Length = 171
Score = 164 bits (415), Expect = 2e-41, Method: Composition-based stats.
Identities = 34/152 (22%), Positives = 68/152 (44%), Gaps = 7/152 (4%)
Query: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTV--EEGQ 58
MF L ++ ++ + P F + +L G +T+ D + + +G+
Sbjct: 1 MFFLKDLSLILTLHPSYFGPQMNQYLREKLLTDVEGTCTGQFGYIVTVLDGMNIDVGKGR 60
Query: 59 LKPGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEG 118
+ PG GS+ V +RAVV+KPF GE+V +S + G + + ++F+ ++ +
Sbjct: 61 IIPGSGSAEFEVKYRAVVWKPFKGEVVDAIVSNVSPIGFFADVGPL--NVFVSTRLIPDN 118
Query: 119 CYYTPEESAWIWPMDEETKLYFDVNEKIRFRI 150
Y P S + ++E K+R ++
Sbjct: 119 LVYNPSNSPPAYMSNDE---LITKGSKVRLKV 147
>1GO3-E nrPDB
Length = 187
Score = 163 bits (413), Expect = 4e-41, Method: Composition-based stats.
Identities = 48/187 (25%), Positives = 92/187 (49%), Gaps = 9/187 (4%)
Query: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60
M+ + +IAD+V++PP++F +D + L K+ ++ +VG ++I D+ + EG++
Sbjct: 1 MYKILEIADVVKVPPEEFGKDLKETVKKILMEKYEGRLDKDVGFVLSIVDVKDIGEGKVV 60
Query: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCY 120
GDGS+Y V F +V+ P + E++ G + G V LG D + ++ +
Sbjct: 61 HGDGSAYHPVVFETLVYIPEMYELIEGEVVDVVEFGSFVR-LGPLDGLIHVSQIMDDYVS 119
Query: 121 YTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDVKPKSPKERELEERAQLENEIEG 180
Y P+ A I +ET ++ + +R RI V + K+ ++R + + G
Sbjct: 120 YDPKREAIIG---KETGKVLEIGDYVRARI-----VAISLKAERKRGSKIALTMRQPYLG 171
Query: 181 KNEETPQ 187
K E +
Sbjct: 172 KLEWIEE 178
>3H0G-G nrPDB
Length = 172
Score = 152 bits (384), Expect = 9e-38, Method: Composition-based stats.
Identities = 31/154 (20%), Positives = 61/154 (39%), Gaps = 13/154 (8%)
Query: 2 FILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYD--LLTVEEGQL 59
F L +++ + + P F + +L G I + D + +++G++
Sbjct: 3 FFLKELSLTISLHPSYFGPRMQDYLKAKLLADVEGTCSGQYGYIICVLDSNTIDIDKGRV 62
Query: 60 KPGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGI--KVSLLGIF-DDIFIPQNMLF 116
PG G + V +RAV+++PF GE+V ++ G + L +F +P +M F
Sbjct: 63 VPGQGFAEFEVKYRAVLWRPFRGEVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPPDMKF 122
Query: 117 EGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRI 150
+ P S + +R +I
Sbjct: 123 DPTANPPNYSG--------EDQVIEKGSNVRLKI 148
>5OIK-G nrPDB
Length = 172
Score = 151 bits (382), Expect = 1e-37, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 62/153 (40%), Gaps = 9/153 (5%)
Query: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60
MF + + + P F + ++ + +L + G I + + + G ++
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLG---IFDDIFIPQNMLFE 117
PG G V ++A+VF+PF GE+V +++ G+ + IP M F+
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120
Query: 118 GCYYTPEESAWIWPMDEETKLYFDVNEKIRFRI 150
P MDE+ +++IR +I
Sbjct: 121 PNSNPPCYK----TMDEDI--VIQQDDEIRLKI 147
>4QIW-E nrPDB
Length = 190
Score = 132 bits (332), Expect = 1e-31, Method: Composition-based stats.
Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 9/167 (5%)
Query: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60
M+ L K+ D+VRIPP F D A L + + G+ + I D+ + EG +
Sbjct: 1 MYKLLKVKDVVRIPPRMFTMDPKEAAKIVLRETYEGIYDRDEGVVLAILDVEEISEGVIV 60
Query: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCY 120
PGDG++Y F +V++P E+V G + + G + +G D + ++ +
Sbjct: 61 PGDGATYHEAIFNVLVWEPRNQEVVEGEVVEMMPYGAFIR-IGPMDGLVHISQLMDDYVV 119
Query: 121 YTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDVKPKSPKERE 167
+ + +I +ET + + +R RI + V KS RE
Sbjct: 120 FDEKNRQFIG---KETNRVLKLGDYVRARI-----IGVSVKSRVIRE 158
>2PMZ-E nrPDB
Length = 180
Score = 124 bits (310), Expect = 4e-29, Method: Composition-based stats.
Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 4/150 (2%)
Query: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60
M+ L K +VRIPP++F + ++L ++ KI+ ++GL + I ++ T EEG L
Sbjct: 1 MYKLIKARSIVRIPPNEFGKPLNEIALNELRQQYQEKILKDLGLVLAILNVKTSEEGILV 60
Query: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCY 120
GDG++Y V F + + P + E+V G + + GI V+ LG D + + +
Sbjct: 61 FGDGATYHEVEFDMITYVPVVQEVVEGEVLQVDNYGIFVN-LGPMDGLVHISQITDDTLK 119
Query: 121 YTPEESAWIWPMDEETKLYFDVNEKIRFRI 150
Y E++K +K+R R+
Sbjct: 120 YDNVRGIIFG---EKSKKVIQKGDKVRARV 146
>2Z0S-A nrPDB
Length = 235
Score = 31.3 bits (69), Expect = 0.30, Method: Composition-based stats.
Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 11/89 (12%)
Query: 62 GDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYY 121
GDG V + + + P G++V G I V + + + Q+ L +
Sbjct: 48 GDGGGRAFVKLKEI-YVPQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRP--F 104
Query: 122 TPEESAWIWPMDEETKLYFDVNEKIRFRI 150
P ++ + V + I+ ++
Sbjct: 105 NP--------AVDDMQSLLKVGDYIKAKV 125
>2RF4-A nrPDB
Length = 214
Score = 30.9 bits (68), Expect = 0.42, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 12/95 (12%)
Query: 7 IADLVRIPPDQFHRDTISAITHQLN-------NKFANKIIPNVGLCITIYDLLTVEEG-- 57
IA V + P + LN NK ++ GL I D L+ E+
Sbjct: 43 IALYVSLAPMYLENPLQGVMKQHLNPLVMKYNNKVGGVVLGYEGLKILDADPLSKEDTSE 102
Query: 58 ---QLKPGDGSSYINVTFRAVVFKPFLGEIVTGWI 89
++ P + V++P +G+++ G+I
Sbjct: 103 KLIKITPDTPFGFTWCHVNLYVWQPQVGDVLEGYI 137
>5N5Z-G nrPDB
Length = 326
Score = 29.7 bits (65), Expect = 0.85, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 12/95 (12%)
Query: 7 IADLVRIPPDQFHRDTISAITHQLN-------NKFANKIIPNVGLCITIYDLLTVEEG-- 57
IA V + P + LN NK ++ GL I D L+ E+
Sbjct: 43 IALYVSLAPMYLENPLQGVMKQHLNPLVMKYNNKVGGVVLGYEGLKILDADPLSKEDTSE 102
Query: 58 ---QLKPGDGSSYINVTFRAVVFKPFLGEIVTGWI 89
++ P + V++P +G+++ G+I
Sbjct: 103 KLIKITPDTPFGFTWCHVNLYVWQPQVGDVLEGYI 137
>2BA0-A nrPDB
Length = 229
Score = 29.3 bits (64), Expect = 1.2, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 18/95 (18%)
Query: 77 FKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEET 136
+ P +G++V G I + A G V + + F PE +++
Sbjct: 53 YTPSVGDVVIGIIREVAANGWAVDIYSPYQA--------FLPVSENPEMKP-----NKKP 99
Query: 137 KLYFDVNEKIRFRIEREVFVDVKPKSPKERELEER 171
D+ + I ++ +++ PK +++R
Sbjct: 100 NEVLDIGDAIIAKV-----LNIDPKMKVTLTMKDR 129
>2DVU-A nrPDB
Length = 327
Score = 28.9 bits (63), Expect = 1.4, Method: Composition-based stats.
Identities = 9/48 (18%), Positives = 22/48 (45%), Gaps = 8/48 (16%)
Query: 37 KIIPNVGLCITIYDLLTVEEGQLKPGDGSSYINVTFRAVVFKPFLGEI 84
+ + ++G + + G + GDG + + + ++PF GE+
Sbjct: 115 RCVNDLGFVGALVN------GFSQEGDGQT--PLYYDLPQYRPFWGEV 154
>2JEB-I nrPDB
Length = 251
Score = 28.6 bits (62), Expect = 2.3, Method: Composition-based stats.
Identities = 20/113 (17%), Positives = 39/113 (34%), Gaps = 22/113 (19%)
Query: 42 VGLCITIYDLLTVEEGQLKPGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSL 101
+ ++D+ + ++ P +GS Y P + +IV G + G V +
Sbjct: 46 YSTVVGLFDVKDTQF-EVIPLEGSFYY----------PKINDIVIGLVEDVEIYGWVVDI 94
Query: 102 LGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREV 154
+ N+L + E+ + Y DV + + RIE
Sbjct: 95 KAPYKAYLPASNLL-----------GRSINVGEDLRRYLDVGDYVIARIENFD 136
>3LLI-A nrPDB
Length = 261
Score = 28.2 bits (61), Expect = 2.6, Method: Composition-based stats.
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 159 KPKSPKERELEERAQLENEIEGKNEETPQNEKP--PAYALLGSCQTDGMGLVSW 210
P + ++ + G E PQ K P L +C + + + W
Sbjct: 184 SPNAAVLWLWSSHNRVNARLAGAPSEDPQFPKVQWPPRELCSACHNERLDVPVW 237
>6H58-y nrPDB
Length = 557
Score = 28.2 bits (61), Expect = 2.8, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Query: 81 LGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYF 140
G+ V G I T GI + L G D + ++ + EE+ + +E
Sbjct: 363 KGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAG---EEAVREYKKGDEIAAVV 419
Query: 141 DVNEKIRFRI 150
+ R RI
Sbjct: 420 LQVDAERERI 429
>5BSW-A nrPDB
Length = 541
Score = 27.8 bits (60), Expect = 3.2, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 132 MDEETKLYFDVNEKIRFRIEREVFVDVKPKSPKERELEE--RAQLE 175
++E K + RI+R FVD PKSP + L + RA+L
Sbjct: 491 TEDEVKDFISKQVIFYKRIKRVFFVDAIPKSPSGKILRKDLRAKLA 536
>1PI6-A nrPDB
Length = 615
Score = 27.8 bits (60), Expect = 3.6, Method: Composition-based stats.
Identities = 23/139 (16%), Positives = 47/139 (33%), Gaps = 12/139 (8%)
Query: 73 RAVVFKPFLGEIVT-------GWISKCTAEGIKVSLL-GIFDDIFIPQNMLFEGCYYTPE 124
++ + F G+I+ G + + V L G +F ++ TP
Sbjct: 428 DLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPL 487
Query: 125 ESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDVKPKSPKERELEERAQLENEIEGKNEE 184
+ + ++ Y + + +I + D++ + K R N I K E
Sbjct: 488 RAKPSYISISPSETYIAAGD-VMGKI---LLYDLQSREVKTSRWAFRTSKINAISWKPAE 543
Query: 185 TPQNEKPPAYALLGSCQTD 203
NE+ L+ + D
Sbjct: 544 KGANEEEIEEDLVATGSLD 562
>4P2L-A nrPDB
Length = 506
Score = 27.8 bits (60), Expect = 3.7, Method: Composition-based stats.
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 159 KPKSPKERELEERAQLENEIEGKNEETPQNEKP--PAYALLGSCQTDGMGLVSW 210
P + ++ + G E PQ K P L +C + G+ W
Sbjct: 429 SPSNAVLWLWTSHNRVNARLSGALSEDPQFPKVQWPPRELCSACHNEVNGVPLW 482
>5C9S-B nrPDB
Length = 572
Score = 27.4 bits (59), Expect = 4.1, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Query: 81 LGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYF 140
GEIV G + +GI V L + F+P + L + Y E + PM
Sbjct: 19 QGEIVDGIVKNVNDKGIFV-YLSRKVEAFVPVSKLSD--SYLKEWKKFYKPMQYVLGKVV 75
Query: 141 DVNEKIRFRI---EREVFVDVK 159
+E R + E E+ D+K
Sbjct: 76 TCDEDSRISLTLRESEINGDLK 97
>3IYF-A nrPDB
Length = 521
Score = 27.4 bits (59), Expect = 4.2, Method: Composition-based stats.
Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 14 PPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLKPGDGSSYINVTFR 73
P I T + + A + VG+ T+E+G++ G GS+ + ++ +
Sbjct: 339 HPKAVTM-LIRGTTEHVIEEVARAVDDAVGVVGC-----TIEDGRIVSGGGSTEVELSMK 392
Query: 74 A 74
Sbjct: 393 L 393
>1DXH-A nrPDB
Length = 335
Score = 27.4 bits (59), Expect = 4.6, Method: Composition-based stats.
Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 5/62 (8%)
Query: 72 FRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWP 131
+ A+ ++ F EIV V + D + P ML + +
Sbjct: 101 YDAIEYRGFKQEIVEELAKFAG-----VPVFNGLTDEYHPTQMLADVLTMREHSDKPLHD 155
Query: 132 MD 133
+
Sbjct: 156 IS 157
>3RUW-A nrPDB
Length = 543
Score = 27.4 bits (59), Expect = 4.8, Method: Composition-based stats.
Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 14 PPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLKPGDGSSYINVTFR 73
P I T + + A + VG+ T+E+G++ G GS+ + ++ +
Sbjct: 361 HPKAVTM-LIRGTTEHVIEEVARAVDDAVGVVGC-----TIEDGRIVSGGGSTEVELSMK 414
Query: 74 A 74
Sbjct: 415 L 415
>5O8D-A nrPDB
Length = 484
Score = 26.6 bits (57), Expect = 7.1, Method: Composition-based stats.
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 104 IFDDIFIPQNMLFEGCYYTPEESA 127
D+I I + + CYY P
Sbjct: 318 FLDEILIWKEISDNFCYYNPGYDG 341
>5LM9-A nrPDB
Length = 329
Score = 26.6 bits (57), Expect = 7.1, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 77 FKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEE-SAWIWPMDEE 135
F+ GEI+TG + K + I + L + + + ++ML + + ++ + E
Sbjct: 33 FREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPE 92
Query: 136 TK 137
+
Sbjct: 93 AR 94
>5MS0-M nrPDB
Length = 497
Score = 26.6 bits (57), Expect = 7.6, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 77 FKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEE-SAWIWPMDEE 135
F+ GEI+TG + K + I + L + + + ++ML + + ++ + E
Sbjct: 132 FREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPE 191
Query: 136 TK 137
+
Sbjct: 192 AR 193
>5LM7-A nrPDB
Length = 428
Score = 26.3 bits (56), Expect = 9.4, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 77 FKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEE-SAWIWPMDEE 135
F+ GEI+TG + K + I + L + + + ++ML + + ++ + E
Sbjct: 132 FREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPE 191
Query: 136 TK 137
+
Sbjct: 192 AR 193
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.312 0.127 0.331
Lambda K H
0.267 0.0388 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,440,223
Number of Sequences: 36641
Number of extensions: 272063
Number of successful extensions: 872
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 824
Number of HSP's gapped (non-prelim): 52
length of query: 212
length of database: 10,336,785
effective HSP length: 93
effective length of query: 119
effective length of database: 6,929,172
effective search space: 824571468
effective search space used: 824571468
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 57 (26.6 bits)