BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P33679 (227 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 1DU5-A nrPDB 424 e-119 4BCT-A nrPDB 283 5e-77 4JRU-A nrPDB 275 2e-74 2I0W-A nrPDB 265 9e-72 1PCV-A nrPDB 261 2e-70 1AUN-A nrPDB 257 4e-69 2G4Y-A nrPDB 211 3e-55 2AHN-A nrPDB 158 2e-39 3G7M-A nrPDB 90 8e-19 4JVH-A nrPDB 35 0.019 2BL5-A nrPDB 35 0.020 4JVY-A nrPDB 33 0.081 2MJH-A nrPDB 33 0.086 2GAG-A nrPDB 31 0.42 1VRQ-A nrPDB 29 1.3 2FQM-A nrPDB 28 3.3 6ELZ-W nrPDB 28 4.0 3NB3-D nrPDB 27 8.9 >1DU5-A nrPDB Length = 206 Score = 424 bits (1090), Expect = e-119, Method: Compositional matrix adjust. Identities = 206/206 (100%), Positives = 206/206 (100%) Query: 22 AVFTVVNQCPFTVWAASVPVGGGRQLNRGESWRITAPAGTTAARIWARTGCKFDASGRGS 81 AVFTVVNQCPFTVWAASVPVGGGRQLNRGESWRITAPAGTTAARIWARTGCKFDASGRGS Sbjct: 1 AVFTVVNQCPFTVWAASVPVGGGRQLNRGESWRITAPAGTTAARIWARTGCKFDASGRGS 60 Query: 82 CRTGDCGGVLQCTGYGRAPNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDGGSGCSR 141 CRTGDCGGVLQCTGYGRAPNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDGGSGCSR Sbjct: 61 CRTGDCGGVLQCTGYGRAPNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDGGSGCSR 120 Query: 142 GPRCAVDVNARCPAELRQDGVCNNACPVFKKDEYCCVGSAANDCHPTNYSRYFKGQCPDA 201 GPRCAVDVNARCPAELRQDGVCNNACPVFKKDEYCCVGSAANDCHPTNYSRYFKGQCPDA Sbjct: 121 GPRCAVDVNARCPAELRQDGVCNNACPVFKKDEYCCVGSAANDCHPTNYSRYFKGQCPDA 180 Query: 202 YSYPKDDATSTFTCPAGTNYKVVFCP 227 YSYPKDDATSTFTCPAGTNYKVVFCP Sbjct: 181 YSYPKDDATSTFTCPAGTNYKVVFCP 206 >4BCT-A nrPDB Length = 201 Score = 283 bits (723), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 135/206 (65%), Positives = 161/206 (78%), Gaps = 5/206 (2%) Query: 22 AVFTVVNQCPFTVWAASVPVGGGRQLNRGESWRITAPAGTTAARIWARTGCKFDASGRGS 81 A F ++N CPFTVWAA+VP GGG++L+RG++W I AGT AR+W RTGC FD +GRG Sbjct: 1 ATFNIINNCPFTVWAAAVP-GGGKRLDRGQNWIINPGAGTKGARVWPRTGCNFDGAGRGK 59 Query: 82 CRTGDCGGVLQCTGYGRAPNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDGGSGCSR 141 C+TGDC G+LQC +G+ PNTLAEYAL QFNNLDFFDISL+DGFNV M F P G GC+R Sbjct: 60 CQTGDCNGLLQCQAFGQPPNTLAEYALNQFNNLDFFDISLVDGFNVAMEFSPTSG-GCTR 118 Query: 142 GPRCAVDVNARCPAELRQDGVCNNACPVFKKDEYCCVGSAANDCHPTNYSRYFKGQCPDA 201 G +C D+N +CP ELR G CNN C VFK D+YCC + +C TN+S++FK +CPDA Sbjct: 119 GIKCTADINGQCPNELRAPGGCNNPCTVFKTDQYCC---NSGNCGLTNFSKFFKDRCPDA 175 Query: 202 YSYPKDDATSTFTCPAGTNYKVVFCP 227 YSYPKDD TSTFTCPAGTNYKVVFCP Sbjct: 176 YSYPKDDQTSTFTCPAGTNYKVVFCP 201 >4JRU-A nrPDB Length = 201 Score = 275 bits (702), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 133/206 (64%), Positives = 153/206 (74%), Gaps = 5/206 (2%) Query: 22 AVFTVVNQCPFTVWAASVPVGGGRQLNRGESWRITAPAGTTAARIWARTGCKFDASGRGS 81 A F + N C +TVWAA+VP GGG QL G+SW + AGTT R+WART C FDASG G Sbjct: 1 ATFNIQNHCSYTVWAAAVP-GGGMQLGSGQSWSLNVNAGTTGGRVWARTNCNFDASGNGK 59 Query: 82 CRTGDCGGVLQCTGYGRAPNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDGGSGCSR 141 C TGDCGG+LQCT YG PNTLAE+AL QF+NLDFFDISL+DGFNVPM+F P +GC+R Sbjct: 60 CETGDCGGLLQCTAYGTPPNTLAEFALNQFSNLDFFDISLVDGFNVPMAFNPT-SNGCTR 118 Query: 142 GPRCAVDVNARCPAELRQDGVCNNACPVFKKDEYCCVGSAANDCHPTNYSRYFKGQCPDA 201 G C D+ CPA L+ G CNN C VFK DEYCC + C T+YSR+FK +CPDA Sbjct: 119 GISCTADIVGECPAALKTTGGCNNPCTVFKTDEYCC---NSGSCSATDYSRFFKTRCPDA 175 Query: 202 YSYPKDDATSTFTCPAGTNYKVVFCP 227 YSYPKDD TSTFTC AGTNY+VVFCP Sbjct: 176 YSYPKDDQTSTFTCTAGTNYEVVFCP 201 >2I0W-A nrPDB Length = 207 Score = 265 bits (678), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 128/208 (61%), Positives = 153/208 (73%), Gaps = 5/208 (2%) Query: 22 AVFTVVNQCPFTVWAASVPVGGGRQLNRGESWRITAPAGTTAARIWARTGCKFDASGRGS 81 A V N CP+TVWAAS P+GGGR+LNRG++W I AP GT ARIW RTGC F+A+GRG+ Sbjct: 1 ATIEVRNNCPYTVWAASTPIGGGRRLNRGQTWVINAPRGTKMARIWGRTGCNFNAAGRGT 60 Query: 82 CRTGDCGGVLQCTGYGRAPNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDGGSGCS- 140 C+TGDCGGVLQCTG+G+ PNTLAEYAL QF+NLDF+DISL+DGFN+PM+F P SG Sbjct: 61 CQTGDCGGVLQCTGWGKPPNTLAEYALDQFSNLDFWDISLVDGFNIPMTFAPTKPSGGKC 120 Query: 141 RGPRCAVDVNARCPAELRQDGVCNNACPVFKKDEYCCVGSAANDCHPTNYSRYFKGQCPD 200 C ++N CP L+ G CNN C F +YCC C PT S++FK +CPD Sbjct: 121 HAIHCTANINGECPRALKVPGGCNNPCTTFGGQQYCCT---QGPCGPTELSKFFKKRCPD 177 Query: 201 AYSYPKDDATSTFTCPAG-TNYKVVFCP 227 AYSYP+DD TSTFTCP G TNY+VVFCP Sbjct: 178 AYSYPQDDPTSTFTCPGGSTNYRVVFCP 205 >1PCV-A nrPDB Length = 205 Score = 261 bits (667), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 125/208 (60%), Positives = 153/208 (73%), Gaps = 5/208 (2%) Query: 22 AVFTVVNQCPFTVWAASVPVGGGRQLNRGESWRITAPAGTTAARIWARTGCKFDASGRGS 81 A V N CP+TVWAAS P+GGGR+L+RG++W I AP GT AR+W RT C F+A+GRG+ Sbjct: 1 ATIEVRNNCPYTVWAASTPIGGGRRLDRGQTWVINAPRGTKMARVWGRTNCNFNAAGRGT 60 Query: 82 CRTGDCGGVLQCTGYGRAPNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDGGSGCS- 140 C+TGDCGGVLQCTG+G+ PNTLAEYAL QF+ LDF+DISL+DGFN+PM+F P SG Sbjct: 61 CQTGDCGGVLQCTGWGKPPNTLAEYALDQFSGLDFWDISLVDGFNIPMTFAPTNPSGGKC 120 Query: 141 RGPRCAVDVNARCPAELRQDGVCNNACPVFKKDEYCCVGSAANDCHPTNYSRYFKGQCPD 200 C ++N CP ELR G CNN C F +YCC C PT +S++FK +CPD Sbjct: 121 HAIHCTANINGECPRELRVPGGCNNPCTTFGGQQYCCT---QGPCGPTFFSKFFKQRCPD 177 Query: 201 AYSYPKDDATSTFTCPAG-TNYKVVFCP 227 AYSYP+DD TSTFTCP G TNY+V+FCP Sbjct: 178 AYSYPQDDPTSTFTCPGGSTNYRVIFCP 205 >1AUN-A nrPDB Length = 208 Score = 257 bits (656), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 126/209 (60%), Positives = 150/209 (71%), Gaps = 5/209 (2%) Query: 21 AAVFTVVNQCPFTVWAASVPVGGGRQLNRGESWRITAPAGTTAARIWARTGCKFDASGRG 80 + VF V N CP+TVWAA+ PVGGGR+L RG+SW AP GT ARIW RT C FD +GRG Sbjct: 1 SGVFEVHNNCPYTVWAAATPVGGGRRLERGQSWWFWAPPGTKMARIWGRTNCNFDGAGRG 60 Query: 81 SCRTGDCGGVLQCTGYGRAPNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDG-GSGC 139 C+TGDCGGVL+C G+G+ PNTLAEYAL QF+NLDF+DIS+IDGFN+PMSF P G G Sbjct: 61 WCQTGDCGGVLECKGWGKPPNTLAEYALNQFSNLDFWDISVIDGFNIPMSFGPTKPGPGK 120 Query: 140 SRGPRCAVDVNARCPAELRQDGVCNNACPVFKKDEYCCVGSAANDCHPTNYSRYFKGQCP 199 G +C ++N CP LR G CNN C F +YCC C PT SR+FK +CP Sbjct: 121 CHGIQCTANINGECPGSLRVPGGCNNPCTTFGGQQYCCT---QGPCGPTELSRWFKQRCP 177 Query: 200 DAYSYPKDDATSTFTCPAG-TNYKVVFCP 227 DAYSYP+DD TSTFTC + T+YKV+FCP Sbjct: 178 DAYSYPQDDPTSTFTCTSWTTDYKVMFCP 206 >2G4Y-A nrPDB Length = 207 Score = 211 bits (536), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 114/212 (53%), Positives = 137/212 (64%), Gaps = 13/212 (6%) Query: 22 AVFTVVNQCPFTVWAASVP-----VGGGRQLNRGESWRITAPAGTTAARIWARTGCKFDA 76 A F +VN+C +TVWAA+ GGRQLN GESW I GT +IWART C FD Sbjct: 1 ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFDD 60 Query: 77 SGRGSCRTGDCGGVLQCTGYGRAPNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDGG 136 SG G C+TGDCGG+L+C +GR P TLAE++L Q+ D+ DIS I GFNVPM F P Sbjct: 61 SGSGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQYGK-DYIDISNIKGFNVPMDFSPT-T 118 Query: 137 SGCSRGPRCAVDVNARCPAELRQ-DGVCNNACPVFKKDEYCCVGSAANDCHPTNYSRYFK 195 GC RG RCA D+ +CPA+L+ G CN+AC VF+ EYCC C PT YSR+FK Sbjct: 119 RGC-RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCT---TGKCGPTEYSRFFK 174 Query: 196 GQCPDAYSYPKDDATSTFTCPAGTNYKVVFCP 227 CPDA+SY D T T TCP +NY+V FCP Sbjct: 175 RLCPDAFSYVLDKPT-TVTCPGSSNYRVTFCP 205 >2AHN-A nrPDB Length = 222 Score = 158 bits (399), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 92/223 (41%), Positives = 118/223 (52%), Gaps = 18/223 (8%) Query: 22 AVFTVVNQCPFTVWAASVPVGGGRQLN-------RGESWRITAPAGTTAARIWARTGCKF 74 A + N CP+ VW ++ QL+ S+++ P R WARTGC Sbjct: 1 ATISFKNNCPYMVWPGTLTSDQKPQLSTTGFELASQASFQLDTPVPWNG-RFWARTGCST 59 Query: 75 DASGRGSCRTGDCG-GVLQCTGYGR-APNTLAEYALKQFNNLDFFDISLIDGFNVPMSFL 132 DASG+ C T DC G + C G G P TLAE+ + DF+D+SL+DGFN+PMS Sbjct: 60 DASGKFVCATADCASGQVMCNGNGAIPPATLAEFNIPAGGGQDFYDVSLVDGFNLPMSVT 119 Query: 133 PDGGSGCSRGPRCAVDVNARCPAELRQDG------VCNNACPVFKKDEYCCV--GSAAND 184 P GG+G + C +VNA CP+EL++ G C +AC F +YCC + Sbjct: 120 PQGGTGDCKTASCPANVNAVCPSELQKKGSDGSVVACLSACVKFGTPQYCCTPPQNTPET 179 Query: 185 CHPTNYSRYFKGQCPDAYSYPKDDATSTFTCPAGTNYKVVFCP 227 C PTNYS F CPDAYSY DD TFTC G NY + FCP Sbjct: 180 CPPTNYSEIFHNACPDAYSYAYDDKRGTFTCNGGPNYAITFCP 222 >3G7M-A nrPDB Length = 151 Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 51/115 (44%), Positives = 66/115 (57%), Gaps = 7/115 (6%) Query: 22 AVFTVVNQCPFTVWAASVPV----GGGRQLNRGESWRITAPAGTTAARIWARTGCKFDAS 77 A T+ N+C FTVW A V GGG +L+ G SW + P + IW RTGC FD + Sbjct: 1 APLTITNRCHFTVWPAVALVLAQGGGGTELHPGASWSLDTPV-IGSQYIWGRTGCSFDRA 59 Query: 78 GRGSCRTGDCGG-VLQCTGYGRAPNTLAEYALKQFNNLDFFDISLIDGFNVPMSF 131 G+G C+TGDCGG L C G P T+AE ++ Q N + S + GFNVPM+ Sbjct: 60 GKGRCQTGDCGGSSLTCGGNPAVPTTMAEVSVLQ-GNYTYGVTSTLKGFNVPMNL 113 >4JVH-A nrPDB Length = 209 Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust. Identities = 15/30 (50%), Positives = 18/30 (60%) Query: 54 RITAPAGTTAARIWARTGCKFDASGRGSCR 83 RI P G TA ++ A TGCK G+GS R Sbjct: 96 RILGPRGLTAKQLEAETGCKIMVRGKGSMR 125 >2BL5-A nrPDB Length = 140 Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust. Identities = 15/30 (50%), Positives = 18/30 (60%) Query: 54 RITAPAGTTAARIWARTGCKFDASGRGSCR 83 RI P G TA ++ A TGCK G+GS R Sbjct: 21 RILGPRGLTAKQLEAETGCKIMVRGKGSMR 50 >4JVY-A nrPDB Length = 196 Score = 33.5 bits (75), Expect = 0.081, Method: Compositional matrix adjust. Identities = 25/108 (23%), Positives = 38/108 (35%), Gaps = 31/108 (28%) Query: 54 RITAPAGTTAARIWARTGCKFDASGRGSCR-----------------TGDCGGVLQCTGY 96 RI P G TA ++ TGCK G+GS R D ++QC Sbjct: 83 RILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKSKESAHRGKANWEHLEDDLHVLVQCEDT 142 Query: 97 GRAPNTLAEYALKQFNNL--------------DFFDISLIDGFNVPMS 130 + + AL+Q L ++++I+G PM Sbjct: 143 ENRVHIKLQAALEQVKKLLIPAPEGTDELKRKQLMELAIINGTYRPMK 190 >2MJH-A nrPDB Length = 142 Score = 33.5 bits (75), Expect = 0.086, Method: Compositional matrix adjust. Identities = 25/108 (23%), Positives = 38/108 (35%), Gaps = 31/108 (28%) Query: 54 RITAPAGTTAARIWARTGCKFDASGRGSCR-----------------TGDCGGVLQCTGY 96 RI P G TA ++ TGCK G+GS R D ++QC Sbjct: 30 RILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKSKESAHRGKANWEHLEDDLHVLVQCEDT 89 Query: 97 GRAPNTLAEYALKQFNNL--------------DFFDISLIDGFNVPMS 130 + + AL+Q L ++++I+G PM Sbjct: 90 ENRVHIKLQAALEQVKKLLIPAPEGTDELKRKQLMELAIINGTYRPMK 137 >2GAG-A nrPDB Length = 965 Score = 31.2 bits (69), Expect = 0.42, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 8/76 (10%) Query: 5 VAIVGIFVALLAVAGEAAVFTVVNQCPFTVWAASVPVGGGRQLNRGESWRITAPAGTTAA 64 VA +G+ A+L + AA+ T + P+T A + G NRG+ PA TA Sbjct: 527 VAAIGVIAAVLGIENPAAIGTTTFRAPYTPVAFAALAG----RNRGDQ---LDPARITAM 579 Query: 65 RIWART-GCKFDASGR 79 W + G +F+ G+ Sbjct: 580 HSWHLSHGAEFEDVGQ 595 >1VRQ-A nrPDB Length = 964 Score = 29.3 bits (64), Expect = 1.3, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 8/76 (10%) Query: 5 VAIVGIFVALLAVAGEAAVFTVVNQCPFTVWAASVPVGGGRQLNRGESWRITAPAGTTAA 64 VA +G+ A+L + A + T + P+T S GR RGE + PA TA Sbjct: 526 VAAIGVIAAVLGIENPAQIGTTTFRAPYT--PVSFAALAGR--TRGE---LLDPARLTAM 578 Query: 65 RIWART-GCKFDASGR 79 W G KF+ G+ Sbjct: 579 HPWHLAHGAKFEDVGQ 594 >2FQM-A nrPDB Length = 75 Score = 28.1 bits (61), Expect = 3.3, Method: Composition-based stats. Identities = 11/28 (39%), Positives = 15/28 (53%) Query: 53 WRITAPAGTTAARIWARTGCKFDASGRG 80 W +T A +A+ W C F+ASG G Sbjct: 36 WMLTIKAVVQSAKHWNLAECTFEASGEG 63 >6ELZ-W nrPDB Length = 236 Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 31/89 (34%), Gaps = 8/89 (8%) Query: 135 GGSGCSRGPRCAVDVNARCPAELRQDGVCNNACPVFKKDEYC--CVGSAANDCHPTNYSR 192 GS G R + + E R++ N +++ + C G D Sbjct: 61 AGSKLIMGKRKVL---QKALGEKREEEYKEN---LYQLSKLCSGVTGLLFTDEDVNTVKE 114 Query: 193 YFKGQCPDAYSYPKDDATSTFTCPAGTNY 221 YFK YS P A TFT P G Y Sbjct: 115 YFKSYVRSDYSRPNTKAPLTFTIPEGIVY 143 >3NB3-D nrPDB Length = 346 Score = 26.6 bits (57), Expect = 8.9, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 4/51 (7%) Query: 111 FNNLDFFDISLIDGFNVPMSFLPDGGSGCSRGPRCAVDVNARCPAELRQDG 161 + N DFF L+DG N + + G+ G V N R LRQ+G Sbjct: 131 YRNTDFF--GLVDGLNFAVQYQGKNGNPSGEGFTSGVTNNGRDA--LRQNG 177 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 1DU5-A nrPDB 323 4e-89 1AUN-A nrPDB 319 7e-88 2I0W-A nrPDB 314 2e-86 4BCT-A nrPDB 310 2e-85 1PCV-A nrPDB 310 2e-85 4JRU-A nrPDB 297 2e-81 2G4Y-A nrPDB 274 3e-74 2AHN-A nrPDB 257 3e-69 3G7M-A nrPDB 134 2e-32 Sequences not found previously or not previously below threshold: 2HRV-A nrPDB 32 0.31 3FKY-A nrPDB 31 0.49 1XX5-A nrPDB 30 0.84 5X45-A nrPDB 29 1.3 2KHW-A nrPDB 29 1.3 1RC9-A nrPDB 29 2.0 5Z0C-A nrPDB 29 2.3 2FQM-A nrPDB 29 2.4 1M9U-A nrPDB 29 2.5 3UI3-A nrPDB 28 2.9 2YNM-D nrPDB 28 3.3 3U2P-A nrPDB 27 7.6 CONVERGED! >1DU5-A nrPDB Length = 206 Score = 323 bits (828), Expect = 4e-89, Method: Composition-based stats. Identities = 206/206 (100%), Positives = 206/206 (100%) Query: 22 AVFTVVNQCPFTVWAASVPVGGGRQLNRGESWRITAPAGTTAARIWARTGCKFDASGRGS 81 AVFTVVNQCPFTVWAASVPVGGGRQLNRGESWRITAPAGTTAARIWARTGCKFDASGRGS Sbjct: 1 AVFTVVNQCPFTVWAASVPVGGGRQLNRGESWRITAPAGTTAARIWARTGCKFDASGRGS 60 Query: 82 CRTGDCGGVLQCTGYGRAPNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDGGSGCSR 141 CRTGDCGGVLQCTGYGRAPNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDGGSGCSR Sbjct: 61 CRTGDCGGVLQCTGYGRAPNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDGGSGCSR 120 Query: 142 GPRCAVDVNARCPAELRQDGVCNNACPVFKKDEYCCVGSAANDCHPTNYSRYFKGQCPDA 201 GPRCAVDVNARCPAELRQDGVCNNACPVFKKDEYCCVGSAANDCHPTNYSRYFKGQCPDA Sbjct: 121 GPRCAVDVNARCPAELRQDGVCNNACPVFKKDEYCCVGSAANDCHPTNYSRYFKGQCPDA 180 Query: 202 YSYPKDDATSTFTCPAGTNYKVVFCP 227 YSYPKDDATSTFTCPAGTNYKVVFCP Sbjct: 181 YSYPKDDATSTFTCPAGTNYKVVFCP 206 >1AUN-A nrPDB Length = 208 Score = 319 bits (817), Expect = 7e-88, Method: Composition-based stats. Identities = 126/209 (60%), Positives = 150/209 (71%), Gaps = 5/209 (2%) Query: 21 AAVFTVVNQCPFTVWAASVPVGGGRQLNRGESWRITAPAGTTAARIWARTGCKFDASGRG 80 + VF V N CP+TVWAA+ PVGGGR+L RG+SW AP GT ARIW RT C FD +GRG Sbjct: 1 SGVFEVHNNCPYTVWAAATPVGGGRRLERGQSWWFWAPPGTKMARIWGRTNCNFDGAGRG 60 Query: 81 SCRTGDCGGVLQCTGYGRAPNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDG-GSGC 139 C+TGDCGGVL+C G+G+ PNTLAEYAL QF+NLDF+DIS+IDGFN+PMSF P G G Sbjct: 61 WCQTGDCGGVLECKGWGKPPNTLAEYALNQFSNLDFWDISVIDGFNIPMSFGPTKPGPGK 120 Query: 140 SRGPRCAVDVNARCPAELRQDGVCNNACPVFKKDEYCCVGSAANDCHPTNYSRYFKGQCP 199 G +C ++N CP LR G CNN C F +YCC C PT SR+FK +CP Sbjct: 121 CHGIQCTANINGECPGSLRVPGGCNNPCTTFGGQQYCCT---QGPCGPTELSRWFKQRCP 177 Query: 200 DAYSYPKDDATSTFTCPAG-TNYKVVFCP 227 DAYSYP+DD TSTFTC + T+YKV+FCP Sbjct: 178 DAYSYPQDDPTSTFTCTSWTTDYKVMFCP 206 >2I0W-A nrPDB Length = 207 Score = 314 bits (805), Expect = 2e-86, Method: Composition-based stats. Identities = 128/208 (61%), Positives = 153/208 (73%), Gaps = 5/208 (2%) Query: 22 AVFTVVNQCPFTVWAASVPVGGGRQLNRGESWRITAPAGTTAARIWARTGCKFDASGRGS 81 A V N CP+TVWAAS P+GGGR+LNRG++W I AP GT ARIW RTGC F+A+GRG+ Sbjct: 1 ATIEVRNNCPYTVWAASTPIGGGRRLNRGQTWVINAPRGTKMARIWGRTGCNFNAAGRGT 60 Query: 82 CRTGDCGGVLQCTGYGRAPNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDGGSGC-S 140 C+TGDCGGVLQCTG+G+ PNTLAEYAL QF+NLDF+DISL+DGFN+PM+F P SG Sbjct: 61 CQTGDCGGVLQCTGWGKPPNTLAEYALDQFSNLDFWDISLVDGFNIPMTFAPTKPSGGKC 120 Query: 141 RGPRCAVDVNARCPAELRQDGVCNNACPVFKKDEYCCVGSAANDCHPTNYSRYFKGQCPD 200 C ++N CP L+ G CNN C F +YCC C PT S++FK +CPD Sbjct: 121 HAIHCTANINGECPRALKVPGGCNNPCTTFGGQQYCCT---QGPCGPTELSKFFKKRCPD 177 Query: 201 AYSYPKDDATSTFTCPAG-TNYKVVFCP 227 AYSYP+DD TSTFTCP G TNY+VVFCP Sbjct: 178 AYSYPQDDPTSTFTCPGGSTNYRVVFCP 205 >4BCT-A nrPDB Length = 201 Score = 310 bits (795), Expect = 2e-85, Method: Composition-based stats. Identities = 135/206 (65%), Positives = 161/206 (78%), Gaps = 5/206 (2%) Query: 22 AVFTVVNQCPFTVWAASVPVGGGRQLNRGESWRITAPAGTTAARIWARTGCKFDASGRGS 81 A F ++N CPFTVWAA+VP GGG++L+RG++W I AGT AR+W RTGC FD +GRG Sbjct: 1 ATFNIINNCPFTVWAAAVP-GGGKRLDRGQNWIINPGAGTKGARVWPRTGCNFDGAGRGK 59 Query: 82 CRTGDCGGVLQCTGYGRAPNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDGGSGCSR 141 C+TGDC G+LQC +G+ PNTLAEYAL QFNNLDFFDISL+DGFNV M F P G GC+R Sbjct: 60 CQTGDCNGLLQCQAFGQPPNTLAEYALNQFNNLDFFDISLVDGFNVAMEFSPTSG-GCTR 118 Query: 142 GPRCAVDVNARCPAELRQDGVCNNACPVFKKDEYCCVGSAANDCHPTNYSRYFKGQCPDA 201 G +C D+N +CP ELR G CNN C VFK D+YCC + +C TN+S++FK +CPDA Sbjct: 119 GIKCTADINGQCPNELRAPGGCNNPCTVFKTDQYCC---NSGNCGLTNFSKFFKDRCPDA 175 Query: 202 YSYPKDDATSTFTCPAGTNYKVVFCP 227 YSYPKDD TSTFTCPAGTNYKVVFCP Sbjct: 176 YSYPKDDQTSTFTCPAGTNYKVVFCP 201 >1PCV-A nrPDB Length = 205 Score = 310 bits (795), Expect = 2e-85, Method: Composition-based stats. Identities = 125/208 (60%), Positives = 153/208 (73%), Gaps = 5/208 (2%) Query: 22 AVFTVVNQCPFTVWAASVPVGGGRQLNRGESWRITAPAGTTAARIWARTGCKFDASGRGS 81 A V N CP+TVWAAS P+GGGR+L+RG++W I AP GT AR+W RT C F+A+GRG+ Sbjct: 1 ATIEVRNNCPYTVWAASTPIGGGRRLDRGQTWVINAPRGTKMARVWGRTNCNFNAAGRGT 60 Query: 82 CRTGDCGGVLQCTGYGRAPNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDGGSGC-S 140 C+TGDCGGVLQCTG+G+ PNTLAEYAL QF+ LDF+DISL+DGFN+PM+F P SG Sbjct: 61 CQTGDCGGVLQCTGWGKPPNTLAEYALDQFSGLDFWDISLVDGFNIPMTFAPTNPSGGKC 120 Query: 141 RGPRCAVDVNARCPAELRQDGVCNNACPVFKKDEYCCVGSAANDCHPTNYSRYFKGQCPD 200 C ++N CP ELR G CNN C F +YCC C PT +S++FK +CPD Sbjct: 121 HAIHCTANINGECPRELRVPGGCNNPCTTFGGQQYCCT---QGPCGPTFFSKFFKQRCPD 177 Query: 201 AYSYPKDDATSTFTCPAG-TNYKVVFCP 227 AYSYP+DD TSTFTCP G TNY+V+FCP Sbjct: 178 AYSYPQDDPTSTFTCPGGSTNYRVIFCP 205 >4JRU-A nrPDB Length = 201 Score = 297 bits (761), Expect = 2e-81, Method: Composition-based stats. Identities = 133/206 (64%), Positives = 153/206 (74%), Gaps = 5/206 (2%) Query: 22 AVFTVVNQCPFTVWAASVPVGGGRQLNRGESWRITAPAGTTAARIWARTGCKFDASGRGS 81 A F + N C +TVWAA+VP GGG QL G+SW + AGTT R+WART C FDASG G Sbjct: 1 ATFNIQNHCSYTVWAAAVP-GGGMQLGSGQSWSLNVNAGTTGGRVWARTNCNFDASGNGK 59 Query: 82 CRTGDCGGVLQCTGYGRAPNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDGGSGCSR 141 C TGDCGG+LQCT YG PNTLAE+AL QF+NLDFFDISL+DGFNVPM+F P +GC+R Sbjct: 60 CETGDCGGLLQCTAYGTPPNTLAEFALNQFSNLDFFDISLVDGFNVPMAFNPT-SNGCTR 118 Query: 142 GPRCAVDVNARCPAELRQDGVCNNACPVFKKDEYCCVGSAANDCHPTNYSRYFKGQCPDA 201 G C D+ CPA L+ G CNN C VFK DEYCC + C T+YSR+FK +CPDA Sbjct: 119 GISCTADIVGECPAALKTTGGCNNPCTVFKTDEYCC---NSGSCSATDYSRFFKTRCPDA 175 Query: 202 YSYPKDDATSTFTCPAGTNYKVVFCP 227 YSYPKDD TSTFTC AGTNY+VVFCP Sbjct: 176 YSYPKDDQTSTFTCTAGTNYEVVFCP 201 >2G4Y-A nrPDB Length = 207 Score = 274 bits (700), Expect = 3e-74, Method: Composition-based stats. Identities = 112/212 (52%), Positives = 136/212 (64%), Gaps = 13/212 (6%) Query: 22 AVFTVVNQCPFTVWAASVP-----VGGGRQLNRGESWRITAPAGTTAARIWARTGCKFDA 76 A F +VN+C +TVWAA+ GGRQLN GESW I GT +IWART C FD Sbjct: 1 ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFDD 60 Query: 77 SGRGSCRTGDCGGVLQCTGYGRAPNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDGG 136 SG G C+TGDCGG+L+C +GR P TLAE++L Q+ D+ DIS I GFNVPM F P Sbjct: 61 SGSGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQYGK-DYIDISNIKGFNVPMDFSPT-- 117 Query: 137 SGCSRGPRCAVDVNARCPAELRQD-GVCNNACPVFKKDEYCCVGSAANDCHPTNYSRYFK 195 + RG RCA D+ +CPA+L+ G CN+AC VF+ EYCC C PT YSR+FK Sbjct: 118 TRGCRGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCT---TGKCGPTEYSRFFK 174 Query: 196 GQCPDAYSYPKDDATSTFTCPAGTNYKVVFCP 227 CPDA+SY D T T TCP +NY+V FCP Sbjct: 175 RLCPDAFSYVLDKPT-TVTCPGSSNYRVTFCP 205 >2AHN-A nrPDB Length = 222 Score = 257 bits (657), Expect = 3e-69, Method: Composition-based stats. Identities = 92/223 (41%), Positives = 118/223 (52%), Gaps = 18/223 (8%) Query: 22 AVFTVVNQCPFTVWAASVPVGGGRQLN-------RGESWRITAPAGTTAARIWARTGCKF 74 A + N CP+ VW ++ QL+ S+++ P R WARTGC Sbjct: 1 ATISFKNNCPYMVWPGTLTSDQKPQLSTTGFELASQASFQLDTPVPWNG-RFWARTGCST 59 Query: 75 DASGRGSCRTGDCG-GVLQCTGYGR-APNTLAEYALKQFNNLDFFDISLIDGFNVPMSFL 132 DASG+ C T DC G + C G G P TLAE+ + DF+D+SL+DGFN+PMS Sbjct: 60 DASGKFVCATADCASGQVMCNGNGAIPPATLAEFNIPAGGGQDFYDVSLVDGFNLPMSVT 119 Query: 133 PDGGSGCSRGPRCAVDVNARCPAELRQDG------VCNNACPVFKKDEYCCV--GSAAND 184 P GG+G + C +VNA CP+EL++ G C +AC F +YCC + Sbjct: 120 PQGGTGDCKTASCPANVNAVCPSELQKKGSDGSVVACLSACVKFGTPQYCCTPPQNTPET 179 Query: 185 CHPTNYSRYFKGQCPDAYSYPKDDATSTFTCPAGTNYKVVFCP 227 C PTNYS F CPDAYSY DD TFTC G NY + FCP Sbjct: 180 CPPTNYSEIFHNACPDAYSYAYDDKRGTFTCNGGPNYAITFCP 222 >3G7M-A nrPDB Length = 151 Score = 134 bits (338), Expect = 2e-32, Method: Composition-based stats. Identities = 54/130 (41%), Positives = 69/130 (53%), Gaps = 8/130 (6%) Query: 22 AVFTVVNQCPFTVWAASVPV----GGGRQLNRGESWRITAPAGTTAARIWARTGCKFDAS 77 A T+ N+C FTVW A V GGG +L+ G SW + P + IW RTGC FD + Sbjct: 1 APLTITNRCHFTVWPAVALVLAQGGGGTELHPGASWSLDTPV-IGSQYIWGRTGCSFDRA 59 Query: 78 GRGSCRTGDCGG-VLQCTGYGRAPNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDGG 136 G+G C+TGDCGG L C G P T+AE ++ Q N + S + GFNVPM+ G Sbjct: 60 GKGRCQTGDCGGSSLTCGGNPAVPTTMAEVSVLQ-GNYTYGVTSTLKGFNVPMNLKCSSG 118 Query: 137 SGC-SRGPRC 145 R C Sbjct: 119 DALPCRKAGC 128 >2HRV-A nrPDB Length = 142 Score = 31.6 bits (70), Expect = 0.31, Method: Composition-based stats. Identities = 10/17 (58%), Positives = 10/17 (58%) Query: 78 GRGSCRTGDCGGVLQCT 94 G G C GDCGG L C Sbjct: 97 GEGPCEPGDCGGKLLCK 113 >3FKY-A nrPDB Length = 370 Score = 30.8 bits (68), Expect = 0.49, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 3/47 (6%) Query: 116 FFDISLIDGFNVPMSFLPDGGSGCSRGPRCAVDVNARCPAELRQDGV 162 +F + + F + +SF P G G C +V+ + E+RQ G Sbjct: 220 YFLHRVAEEFGIKISFHPKPLKGDWNGAGCHANVSTK---EMRQPGG 263 >1XX5-A nrPDB Length = 221 Score = 30.0 bits (66), Expect = 0.84, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 5/49 (10%) Query: 151 ARCPAELRQDGVCNNACPVFKKDEYCCVGSAANDCHPTNYSRYFKGQCP 199 CP+ +G+C N C ++ K C + C + K CP Sbjct: 168 GDCPSACD-NGLCTNPCTIYNKLTNCDSLLKQSSCQ----DDWIKSNCP 211 >5X45-A nrPDB Length = 139 Score = 29.3 bits (64), Expect = 1.3, Method: Composition-based stats. Identities = 10/17 (58%), Positives = 10/17 (58%) Query: 78 GRGSCRTGDCGGVLQCT 94 G G C GDCGG L C Sbjct: 98 GEGHCEPGDCGGKLLCK 114 >2KHW-A nrPDB Length = 108 Score = 29.3 bits (64), Expect = 1.3, Method: Composition-based stats. Identities = 10/22 (45%), Positives = 14/22 (63%) Query: 204 YPKDDATSTFTCPAGTNYKVVF 225 + DDAT TFT G++ K+ F Sbjct: 43 WTYDDATKTFTVTEGSDEKITF 64 >1RC9-A nrPDB Length = 221 Score = 28.9 bits (63), Expect = 2.0, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 5/62 (8%) Query: 138 GCSRGPRCAVDVNARCPAELRQDGVCNNACPVFKKDEYCCVGSAANDCHPTNYSRYFKGQ 197 G + P + CP++ +G+C N C K C + C Y K Sbjct: 155 GKTATPYTSGTPCGDCPSDCD-NGLCTNPCTRENKFTNCNTMVQQSSCQ----DNYMKTN 209 Query: 198 CP 199 CP Sbjct: 210 CP 211 >5Z0C-A nrPDB Length = 374 Score = 28.5 bits (62), Expect = 2.3, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 25/85 (29%), Gaps = 4/85 (4%) Query: 138 GCSRGPRCAVDVNARCPA-ELRQDGVCNNACPVFKKDEYCCVGSAANDCHPTNYSRYFKG 196 G G C V CP + C N F Y + +F Sbjct: 92 GDKVGVGCIVGSCHSCPNCNNHLENYCPNRILTFGSRYYDGTLNHGGYSDLMVVQEHFAV 151 Query: 197 QCPDAYSYPKDDATSTFTCPAGTNY 221 + PDA P D A + C T Y Sbjct: 152 RIPDAL--PLDSA-APLLCAGITVY 173 >2FQM-A nrPDB Length = 75 Score = 28.5 bits (62), Expect = 2.4, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 16/34 (47%) Query: 48 NRGESWRITAPAGTTAARIWARTGCKFDASGRGS 81 + W +T A +A+ W C F+ASG G Sbjct: 31 EQKSQWMLTIKAVVQSAKHWNLAECTFEASGEGV 64 >1M9U-A nrPDB Length = 241 Score = 28.5 bits (62), Expect = 2.5, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 15/40 (37%) Query: 59 AGTTAARIWARTGCKFDASGRGSCRTGDCGGVLQCTGYGR 98 G A IW C D +G GD GG L C G Sbjct: 163 VGVGGANIWDNHICVQDPAGNTGACNGDSGGPLNCPDGGT 202 >3UI3-A nrPDB Length = 160 Score = 28.1 bits (61), Expect = 2.9, Method: Composition-based stats. Identities = 10/22 (45%), Positives = 13/22 (59%) Query: 204 YPKDDATSTFTCPAGTNYKVVF 225 + DDAT TFT G+ Y + F Sbjct: 43 WTYDDATKTFTVTEGSMYALAF 64 >2YNM-D nrPDB Length = 530 Score = 28.1 bits (61), Expect = 3.3, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 22/80 (27%), Gaps = 8/80 (10%) Query: 98 RAPNTLAEYALKQFNNLDFFDISLIDG--FNVPMSFLPDGGSGCSRGPRCAVDVNARCPA 155 R P T + + L+ G F F P+ G C ++ P Sbjct: 52 RPPVTYTTFQARDLGGDT---AELVKGHIFEAVERFKPEA---LLVGESCTAELIQDQPG 105 Query: 156 ELRQDGVCNNACPVFKKDEY 175 L + N + Y Sbjct: 106 SLAKGMGLNIPIVSLELPAY 125 >3U2P-A nrPDB Length = 497 Score = 27.0 bits (58), Expect = 7.6, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 29/102 (28%), Gaps = 12/102 (11%) Query: 128 PMSFLPDGGSGCSRGPRCAVDVNARCPAELRQDGVCNNACPVFKKDEYCCVGSAANDCHP 187 P + +G S RC RC G N C C C+ Sbjct: 147 PSNLTLVSTNGSSGCGRCHKSCTGRC------WGPTENHCQTL--TRTVCAEQCDGRCYG 198 Query: 188 TNYSRYFKGQCPDAYSYPKDDATSTFTCPAGTNYK--VVFCP 227 S +C S PKD T F C + V CP Sbjct: 199 PYVSDCCHRECAGGCSGPKD--TDCFACMNFNDSGACVTQCP 238 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.307 0.133 0.429 Lambda K H 0.267 0.0401 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,846,545 Number of Sequences: 36641 Number of extensions: 420481 Number of successful extensions: 1133 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 26 Number of HSP's that attempted gapping in prelim test: 1031 Number of HSP's gapped (non-prelim): 66 length of query: 227 length of database: 10,336,785 effective HSP length: 94 effective length of query: 133 effective length of database: 6,892,531 effective search space: 916706623 effective search space used: 916706623 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 57 (26.6 bits)