BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= P32911
         (108 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

2OGH-A nrPDB                                                          224   6e-60
4UER-F nrPDB                                                          171   7e-44
2IF1-A nrPDB                                                          127   1e-30
4KZY-l nrPDB                                                          127   1e-30
4BTS-AF nrPDB                                                          81   1e-16
5JBH-1 nrPDB                                                           38   0.001
5ZCY-A nrPDB                                                           36   0.003
1K8I-A nrPDB                                                           30   0.19 
1HDM-A nrPDB                                                           30   0.27 
4LJO-A nrPDB                                                           28   1.2  
3EZU-A nrPDB                                                           28   1.3  
3DZO-A nrPDB                                                           27   1.7  
3BYV-A nrPDB                                                           27   1.7  
3QJ4-A nrPDB                                                           27   2.0  
5EDV-A nrPDB                                                           27   2.9  
3BHH-A nrPDB                                                           26   4.0  
4YRY-A nrPDB                                                           25   5.3  
1QSA-A nrPDB                                                           25   5.9  

>2OGH-A nrPDB
          Length = 108

 Score =  224 bits (571), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 108/108 (100%), Positives = 108/108 (100%)

Query: 1   MSIENLKSFDPFADTGDDETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKK 60
           MSIENLKSFDPFADTGDDETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKK
Sbjct: 1   MSIENLKSFDPFADTGDDETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKK 60

Query: 61  DFACNGNIVKDPEMGEIIQLQGDQRAKVCEFMISQLGLQKKNIKIHGF 108
           DFACNGNIVKDPEMGEIIQLQGDQRAKVCEFMISQLGLQKKNIKIHGF
Sbjct: 61  DFACNGNIVKDPEMGEIIQLQGDQRAKVCEFMISQLGLQKKNIKIHGF 108


>4UER-F nrPDB
          Length = 83

 Score =  171 bits (433), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 83/83 (100%), Positives = 83/83 (100%)

Query: 25  YIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGDQ 84
           YIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGDQ
Sbjct: 1   YIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGDQ 60

Query: 85  RAKVCEFMISQLGLQKKNIKIHG 107
           RAKVCEFMISQLGLQKKNIKIHG
Sbjct: 61  RAKVCEFMISQLGLQKKNIKIHG 83


>2IF1-A nrPDB
          Length = 126

 Score =  127 bits (319), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 66/112 (58%), Positives = 88/112 (78%), Gaps = 6/112 (5%)

Query: 2   SIENLKSFDPFADT--GDD--ETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKV 57
           +I+NL SFDPFAD   GDD     T +YIHIRIQQRNGRKTLTTVQG+ ++YD K+++K 
Sbjct: 16  AIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKA 75

Query: 58  LKKDFACNGNIVKDPEMGEIIQLQGDQRAKVCEFMISQLGLQKKN-IKIHGF 108
            KK FACNG +++ PE GE+IQLQGDQR  +C+F++ ++GL K + +K+HGF
Sbjct: 76  FKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLV-EIGLAKDDQLKVHGF 126


>4KZY-l nrPDB
          Length = 113

 Score =  127 bits (319), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 66/112 (58%), Positives = 88/112 (78%), Gaps = 6/112 (5%)

Query: 2   SIENLKSFDPFADT--GDD--ETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKV 57
           +I+NL SFDPFAD   GDD     T +YIHIRIQQRNGRKTLTTVQG+ ++YD K+++K 
Sbjct: 3   AIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKA 62

Query: 58  LKKDFACNGNIVKDPEMGEIIQLQGDQRAKVCEFMISQLGLQKKN-IKIHGF 108
            KK FACNG +++ PE GE+IQLQGDQR  +C+F++ ++GL K + +K+HGF
Sbjct: 63  FKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLV-EIGLAKDDQLKVHGF 113


>4BTS-AF nrPDB
          Length = 101

 Score = 80.9 bits (198), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 56/83 (67%)

Query: 25  YIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGDQ 84
           +IHIR++QR GRK  TTV+G+P E+D ++I+K  KK  +CN  IV++ E  ++I+L GD 
Sbjct: 18  HIHIRVEQRRGRKCFTTVEGIPPEFDYEKIMKYWKKWLSCNATIVEEDEGKKVIKLNGDH 77

Query: 85  RAKVCEFMISQLGLQKKNIKIHG 107
           R ++ +F+  +      NI IHG
Sbjct: 78  RNQIQQFLSEEGIAAVDNITIHG 100


>5JBH-1 nrPDB
          Length = 102

 Score = 37.7 bits (86), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 7/82 (8%)

Query: 26  IHIRIQQRNGRKTLTTVQGVPEEY-DLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGDQ 84
           I I + +R   K +T ++G      DLK + K LK   AC G  VKD      I+LQGD 
Sbjct: 27  IKIYVTKRRFGKLMTIIEGFDTSVIDLKELAKKLKDICACGGT-VKD----NTIELQGDH 81

Query: 85  RAKVCEFMISQLGLQKKNIKIH 106
           R KV E ++ ++G  + +I+I 
Sbjct: 82  RKKVAEELV-KMGFSRDSIEIR 102


>5ZCY-A nrPDB
          Length = 99

 Score = 36.2 bits (82), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 7/82 (8%)

Query: 26  IHIRIQQRNGRKTLTTVQGVPE-EYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGDQ 84
           I + I++    K  T ++G+ E E+DL+ I K LK   AC G           I+LQGD 
Sbjct: 24  IKVYIERARYGKVKTIIEGIDEKEFDLEEIAKKLKAKLACGGTAKNGR-----IELQGDH 78

Query: 85  RAKVCEFMISQLGLQKKNIKIH 106
           R ++ + ++++LG  ++ I++ 
Sbjct: 79  RDRIKK-LLAELGFSEELIEVE 99


>1K8I-A nrPDB
          Length = 191

 Score = 30.4 bits (67), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 8/82 (9%)

Query: 31  QQRNGRKTLTTVQGVP-----EEYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGDQR 85
           Q    R TL    G+P     E YD   +      DF+ N  + + P+  E  Q QGD  
Sbjct: 11  QNHTFRHTLFCQDGIPNIGLSETYDEDELFSF---DFSQNTRVPRLPDFAEWAQGQGDAS 67

Query: 86  AKVCEFMISQLGLQKKNIKIHG 107
           A   +    ++ +++ + K+ G
Sbjct: 68  AIAFDKSFCEMLMREVSPKLEG 89


>1HDM-A nrPDB
          Length = 201

 Score = 30.0 bits (66), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 6/56 (10%)

Query: 44 GVPEEYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGDQ---RAKVCEFMISQL 96
          G+ E YD  ++      DF+ N  + + PE  +  Q QGD      + CE+MI Q+
Sbjct: 32 GLSEAYDEDQLFFF---DFSQNTRVPRLPEFADWAQEQGDAILFDKEFCEWMIQQI 84


>4LJO-A nrPDB
          Length = 223

 Score = 27.7 bits (60), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 1   MSIENLKSFDP--FADTGDDETATSNYIHIRIQQRNG 35
           +S+ N  S DP    +  + ETAT  Y+H+R Q   G
Sbjct: 158 VSLINAHSLDPATLYEVEELETATERYLHVRPQPLAG 194


>3EZU-A nrPDB
          Length = 342

 Score = 27.7 bits (60), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 12 FADTGDDETATSNYIHIRIQQRNGRKTLTTVQGVPEE 48
          F +T  DET   + ++ R+Q+R GR+ L  +   P E
Sbjct: 40 FWETVADETRHHSAVYERLQERGGRENLPIIIYKPAE 76


>3DZO-A nrPDB
          Length = 413

 Score = 27.3 bits (59), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 12/86 (13%)

Query: 10  DPFA--DTGDDETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKD------ 61
           DP+A  +  D ET  S  +H+       R     ++ + EE    R+L+ +K        
Sbjct: 90  DPYAYLEATDQETGESFEVHVPYFTE--RPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVH 147

Query: 62  --FACNGNIVKDPEMGEIIQLQGDQR 85
             F    ++VKDP+  ++I+++ D+R
Sbjct: 148 LRFIFPFDLVKDPQKKKMIRVRLDER 173


>3BYV-A nrPDB
          Length = 377

 Score = 27.3 bits (59), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 12/86 (13%)

Query: 10  DPFA--DTGDDETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKD------ 61
           DP+A  +  D ET  S  +H+       R     ++ + EE    R+L+ +K        
Sbjct: 85  DPYAYLEATDQETGESFEVHVPYFTE--RPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVH 142

Query: 62  --FACNGNIVKDPEMGEIIQLQGDQR 85
             F    ++VKDP+  ++I+++ D+R
Sbjct: 143 LRFIFPFDLVKDPQKKKMIRVRLDER 168


>3QJ4-A nrPDB
          Length = 342

 Score = 26.9 bits (58), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 19/81 (23%)

Query: 19  ETATSNYIHIRIQQ---RNGRKTLTTVQGVPEEYDLKRILKVLKKDFACNGNIVKDPEMG 75
           E+    Y   R+ Q   R+ +  ++   G PE++DL                IV    + 
Sbjct: 121 ESGAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDL----------------IVLTMPVP 164

Query: 76  EIIQLQGDQRAKVCEFMISQL 96
           EI+QLQGD    + E    QL
Sbjct: 165 EILQLQGDITTLISECQRQQL 185


>5EDV-A nrPDB
          Length = 380

 Score = 26.6 bits (57), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 1   MSIENLKSFDP--FADTGDDETATSNYIHIRIQQRNG 35
           +S+ N  S DP    +  + ETAT  Y+H+R Q   G
Sbjct: 315 VSLINAHSLDPATLYEVEELETATERYLHVRPQPLAG 351


>3BHH-A nrPDB
          Length = 295

 Score = 25.8 bits (55), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 64  CNGNIVKDPEMGEIIQLQGDQRA 86
           C G  VK  + G  I++QGDQ+A
Sbjct: 140 CKGAAVKLADFGLAIEVQGDQQA 162


>4YRY-A nrPDB
          Length = 276

 Score = 25.4 bits (54), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 19 ETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKK 60
          E     ++ IR+ ++  R  LT     PEE   + ++KV+ K
Sbjct: 32 EARPGQFVVIRLHEKGERIPLTVADTKPEEGLFRMVVKVVGK 73


>1QSA-A nrPDB
          Length = 618

 Score = 25.4 bits (54), Expect = 5.9,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 19  ETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFACNGNIVKDPEMGEII 78
           E      +H  +QQR G   +   Q + EEY+    LK+ K     +  + + PEM  + 
Sbjct: 335 EAEAKEILHQLMQQR-GFYPMVAAQRIGEEYE----LKIDKAPQNVDSALTQGPEMARVR 389

Query: 79  QL 80
           +L
Sbjct: 390 EL 391


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

2OGH-A nrPDB                                                          170   8e-44
2IF1-A nrPDB                                                          140   2e-34
4KZY-l nrPDB                                                          139   2e-34
4UER-F nrPDB                                                          128   7e-31
4BTS-AF nrPDB                                                         125   6e-30
5JBH-1 nrPDB                                                           87   2e-18

Sequences not found previously or not previously below threshold:

5ZCY-A nrPDB                                                           58   6e-10
1D1R-A nrPDB                                                           35   0.007
5OQL-l nrPDB                                                           32   0.063
5VYC-l1 nrPDB                                                          31   0.12 
5EDV-A nrPDB                                                           26   3.2  
4LJO-A nrPDB                                                           26   3.2  
3S1S-A nrPDB                                                           26   3.6  
1WS0-A nrPDB                                                           26   4.5  
1GKR-A nrPDB                                                           25   6.7  
3GF9-A nrPDB                                                           25   8.4  
3JZY-A nrPDB                                                           25   8.5  

>2OGH-A nrPDB
          Length = 108

 Score =  170 bits (432), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 108/108 (100%), Positives = 108/108 (100%)

Query: 1   MSIENLKSFDPFADTGDDETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKK 60
           MSIENLKSFDPFADTGDDETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKK
Sbjct: 1   MSIENLKSFDPFADTGDDETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKK 60

Query: 61  DFACNGNIVKDPEMGEIIQLQGDQRAKVCEFMISQLGLQKKNIKIHGF 108
           DFACNGNIVKDPEMGEIIQLQGDQRAKVCEFMISQLGLQKKNIKIHGF
Sbjct: 61  DFACNGNIVKDPEMGEIIQLQGDQRAKVCEFMISQLGLQKKNIKIHGF 108


>2IF1-A nrPDB
          Length = 126

 Score =  140 bits (352), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 63/111 (56%), Positives = 83/111 (74%), Gaps = 4/111 (3%)

Query: 2   SIENLKSFDPFADT--GDD--ETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKV 57
           +I+NL SFDPFAD   GDD     T +YIHIRIQQRNGRKTLTTVQG+ ++YD K+++K 
Sbjct: 16  AIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKA 75

Query: 58  LKKDFACNGNIVKDPEMGEIIQLQGDQRAKVCEFMISQLGLQKKNIKIHGF 108
            KK FACNG +++ PE GE+IQLQGDQR  +C+F++     +   +K+HGF
Sbjct: 76  FKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 126


>4KZY-l nrPDB
          Length = 113

 Score =  139 bits (351), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 63/111 (56%), Positives = 83/111 (74%), Gaps = 4/111 (3%)

Query: 2   SIENLKSFDPFADT--GDD--ETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKV 57
           +I+NL SFDPFAD   GDD     T +YIHIRIQQRNGRKTLTTVQG+ ++YD K+++K 
Sbjct: 3   AIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKA 62

Query: 58  LKKDFACNGNIVKDPEMGEIIQLQGDQRAKVCEFMISQLGLQKKNIKIHGF 108
            KK FACNG +++ PE GE+IQLQGDQR  +C+F++     +   +K+HGF
Sbjct: 63  FKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113


>4UER-F nrPDB
          Length = 83

 Score =  128 bits (321), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 83/83 (100%), Positives = 83/83 (100%)

Query: 25  YIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGDQ 84
           YIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGDQ
Sbjct: 1   YIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGDQ 60

Query: 85  RAKVCEFMISQLGLQKKNIKIHG 107
           RAKVCEFMISQLGLQKKNIKIHG
Sbjct: 61  RAKVCEFMISQLGLQKKNIKIHG 83


>4BTS-AF nrPDB
          Length = 101

 Score =  125 bits (313), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 36/85 (42%), Positives = 56/85 (65%)

Query: 23  SNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQG 82
             +IHIR++QR GRK  TTV+G+P E+D ++I+K  KK  +CN  IV++ E  ++I+L G
Sbjct: 16  QTHIHIRVEQRRGRKCFTTVEGIPPEFDYEKIMKYWKKWLSCNATIVEEDEGKKVIKLNG 75

Query: 83  DQRAKVCEFMISQLGLQKKNIKIHG 107
           D R ++ +F+  +      NI IHG
Sbjct: 76  DHRNQIQQFLSEEGIAAVDNITIHG 100


>5JBH-1 nrPDB
          Length = 102

 Score = 87.0 bits (214), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)

Query: 17  DDETATSNYIHIRIQQRNGRKTLTTVQGVPEEY-DLKRILKVLKKDFACNGNIVKDPEMG 75
           ++       I I + +R   K +T ++G      DLK + K LK   AC G +       
Sbjct: 18  EEIAKEEQKIKIYVTKRRFGKLMTIIEGFDTSVIDLKELAKKLKDICACGGTV-----KD 72

Query: 76  EIIQLQGDQRAKVCEFMISQLGLQKKNIKIH 106
             I+LQGD R KV E ++ ++G  + +I+I 
Sbjct: 73  NTIELQGDHRKKVAEELV-KMGFSRDSIEIR 102


>5ZCY-A nrPDB
          Length = 99

 Score = 58.5 bits (140), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 7/81 (8%)

Query: 26  IHIRIQQRNGRKTLTTVQGVPE-EYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGDQ 84
           I + I++    K  T ++G+ E E+DL+ I K LK   AC G           I+LQGD 
Sbjct: 24  IKVYIERARYGKVKTIIEGIDEKEFDLEEIAKKLKAKLACGGT-----AKNGRIELQGDH 78

Query: 85  RAKVCEFMISQLGLQKKNIKI 105
           R ++ + ++++LG  ++ I++
Sbjct: 79  RDRIKK-LLAELGFSEELIEV 98


>1D1R-A nrPDB
          Length = 116

 Score = 35.0 bits (79), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 9/73 (12%)

Query: 28  IRIQQR---NGRKTLTTVQGVP-EEYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGD 83
           +RIQ++      K +  + GV  ++ +L ++   LKK   C G  VKD     +I++QGD
Sbjct: 33  VRIQRQTSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCGGA-VKDG----VIEIQGD 87

Query: 84  QRAKVCEFMISQL 96
           +R  +   + ++ 
Sbjct: 88  KRDLLKSLLEAKG 100


>5OQL-l nrPDB
          Length = 255

 Score = 31.9 bits (71), Expect = 0.063,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 1/64 (1%)

Query: 12  FADTGDDETATSNYIHIRIQQRNGRKTLTTVQGVPEEYD-LKRILKVLKKDFACNGNIVK 70
            AD   DE      I +R+ +  G+  LT   G+    D L+ +++  +     N  +  
Sbjct: 70  LADLQKDEDHAFRKIKLRVDEVQGKNCLTNFHGLDFTTDKLRSLVRKWQTLIEANVTVTT 129

Query: 71  DPEM 74
               
Sbjct: 130 TDHY 133


>5VYC-l1 nrPDB
          Length = 198

 Score = 31.1 bits (69), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 33  RNGRKTLTTVQGVPE-EYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGDQRAKVCEF 91
           R  +K +T V G+   E DLK   +   + F+C  ++  + E    I +QGD    + + 
Sbjct: 122 RAKKKYVTRVCGLATFEIDLKEAQRFFAQKFSCGASVTGEDE----IIIQGDFTDDIIDV 177

Query: 92  MISQ 95
           +  +
Sbjct: 178 IQEK 181


>5EDV-A nrPDB
          Length = 380

 Score = 26.1 bits (56), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 1   MSIENLKSFDP--FADTGDDETATSNYIHIRIQ 31
           +S+ N  S DP    +  + ETAT  Y+H+R Q
Sbjct: 315 VSLINAHSLDPATLYEVEELETATERYLHVRPQ 347


>4LJO-A nrPDB
          Length = 223

 Score = 26.1 bits (56), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 1   MSIENLKSFDP--FADTGDDETATSNYIHIRIQ 31
           +S+ N  S DP    +  + ETAT  Y+H+R Q
Sbjct: 158 VSLINAHSLDPATLYEVEELETATERYLHVRPQ 190


>3S1S-A nrPDB
          Length = 878

 Score = 26.1 bits (56), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 5/89 (5%)

Query: 11  PFADTGDDETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFACNGNIVK 70
           P+     D      + H +I Q  G +  T    +  E     ++  L +D    G ++ 
Sbjct: 408 PYVSGVTDPAIKRKFAH-KIIQLTGNRPQTLFGQIGVEALFLELVTELVQD----GTVIS 462

Query: 71  DPEMGEIIQLQGDQRAKVCEFMISQLGLQ 99
                + +  QG++     EF++   GL+
Sbjct: 463 AIMPKQYLTAQGNESKAFREFLVGNFGLE 491


>1WS0-A nrPDB
          Length = 156

 Score = 25.7 bits (55), Expect = 4.5,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 19  ETATSNYIHIRIQQRNGRKTLTTVQGV 45
           E   ++YI +R Q R G+  L   +G 
Sbjct: 99  EVERADYIKVRAQNRRGKVFLLEAEGF 125


>1GKR-A nrPDB
          Length = 458

 Score = 25.4 bits (54), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 18/39 (46%)

Query: 41  TVQGVPEEYDLKRILKVLKKDFACNGNIVKDPEMGEIIQ 79
           +V G+ +      + ++ ++  AC   IV   E   IIQ
Sbjct: 153 SVPGMFDAVSDGELFEIFQEIAACGSVIVVHAENETIIQ 191


>3GF9-A nrPDB
          Length = 295

 Score = 25.0 bits (53), Expect = 8.4,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 6/60 (10%)

Query: 11  PFADTGDDETATSNYIHIRIQ----QRNGRKTLTTVQGVPEEYDLKRILKVLKKDFACNG 66
           P    GD   A  +++   I+    Q NG   L   Q   E+ D K  LK L  D  C G
Sbjct: 172 PVQMIGDILAAELSHMQAYIRFCSCQLNGAALLQ--QKTDEDTDFKEFLKKLASDPRCKG 229


>3JZY-A nrPDB
          Length = 510

 Score = 25.0 bits (53), Expect = 8.5,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 6/60 (10%)

Query: 11  PFADTGDDETATSNYIHIRIQ----QRNGRKTLTTVQGVPEEYDLKRILKVLKKDFACNG 66
           P    GD   A  +++   I+    Q NG   L   Q   E+ D K  LK L  D  C G
Sbjct: 101 PVQMIGDILAAELSHMQAYIRFCSCQLNGAALLQ--QKTDEDTDFKEFLKKLASDPRCKG 158


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.317    0.139    0.369 

Lambda     K      H
   0.267   0.0425    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,087,064
Number of Sequences: 36641
Number of extensions: 140461
Number of successful extensions: 391
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 357
Number of HSP's gapped (non-prelim): 40
length of query: 108
length of database: 10,336,785
effective HSP length: 74
effective length of query: 34
effective length of database: 7,625,351
effective search space: 259261934
effective search space used: 259261934
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)