BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= P32861
(499 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
2I5K-A nrPDB 1002 0.0
3R2W-A nrPDB 514 e-146
5WEG-A nrPDB 500 e-142
2Q4J-A nrPDB 469 e-132
3GUE-A nrPDB 309 2e-84
4M2B-A nrPDB 273 1e-73
1VM8-A nrPDB 49 4e-06
1JV1-A nrPDB 47 3e-05
4BMA-A nrPDB 44 2e-04
3OC9-A nrPDB 40 0.003
2YQJ-A nrPDB 36 0.044
1LFW-A nrPDB 32 0.93
2N5T-A nrPDB 31 0.98
4ZBK-B nrPDB 31 1.6
5JAA-A nrPDB 30 3.4
>2I5K-A nrPDB
Length = 488
Score = 1002 bits (2591), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/488 (100%), Positives = 488/488 (100%)
Query: 12 TYAFESNTNSVAASQMRNALNKLADSSKLDDAARAKFENELDSFFTLFRRYLVEKSSRTT 71
TYAFESNTNSVAASQMRNALNKLADSSKLDDAARAKFENELDSFFTLFRRYLVEKSSRTT
Sbjct: 1 TYAFESNTNSVAASQMRNALNKLADSSKLDDAARAKFENELDSFFTLFRRYLVEKSSRTT 60
Query: 72 LEWDKIKSPNPDEVVKYEIISQQPENVSNLSKLAVLKLNGGLGTSMGCVGPKSVIEVREG 131
LEWDKIKSPNPDEVVKYEIISQQPENVSNLSKLAVLKLNGGLGTSMGCVGPKSVIEVREG
Sbjct: 61 LEWDKIKSPNPDEVVKYEIISQQPENVSNLSKLAVLKLNGGLGTSMGCVGPKSVIEVREG 120
Query: 132 NTFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKKYSANRIRIRSFNQSRFPR 191
NTFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKKYSANRIRIRSFNQSRFPR
Sbjct: 121 NTFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKKYSANRIRIRSFNQSRFPR 180
Query: 192 VYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDNLGAT 251
VYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDNLGAT
Sbjct: 181 VYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDNLGAT 240
Query: 252 VDLKILNHMIETGAEYIMELTDKTRADVKGGTLISYDGQVRLLEVAQVPKEHIDEFKNIR 311
VDLKILNHMIETGAEYIMELTDKTRADVKGGTLISYDGQVRLLEVAQVPKEHIDEFKNIR
Sbjct: 241 VDLKILNHMIETGAEYIMELTDKTRADVKGGTLISYDGQVRLLEVAQVPKEHIDEFKNIR 300
Query: 312 KFTNFNTNNLWINLKAVKRLIESSNLEMEIIPNQKTITRDGHEINVLQLETACGAAIRHF 371
KFTNFNTNNLWINLKAVKRLIESSNLEMEIIPNQKTITRDGHEINVLQLETACGAAIRHF
Sbjct: 301 KFTNFNTNNLWINLKAVKRLIESSNLEMEIIPNQKTITRDGHEINVLQLETACGAAIRHF 360
Query: 372 DGAHGVVVPRSRFLPVKTCSDLLLVKSDLFRLEHGSLKLDPSRFGPNPLIKLGSHFKKVS 431
DGAHGVVVPRSRFLPVKTCSDLLLVKSDLFRLEHGSLKLDPSRFGPNPLIKLGSHFKKVS
Sbjct: 361 DGAHGVVVPRSRFLPVKTCSDLLLVKSDLFRLEHGSLKLDPSRFGPNPLIKLGSHFKKVS 420
Query: 432 GFNARIPHIPKIVELDHLTITGNVFLGKDVTLRGTVIIVCSDGHKIDIPNGSILENVVVT 491
GFNARIPHIPKIVELDHLTITGNVFLGKDVTLRGTVIIVCSDGHKIDIPNGSILENVVVT
Sbjct: 421 GFNARIPHIPKIVELDHLTITGNVFLGKDVTLRGTVIIVCSDGHKIDIPNGSILENVVVT 480
Query: 492 GNLQILEH 499
GNLQILEH
Sbjct: 481 GNLQILEH 488
>3R2W-A nrPDB
Length = 528
Score = 514 bits (1323), Expect = e-146, Method: Compositional matrix adjust.
Identities = 264/474 (55%), Positives = 355/474 (74%), Gaps = 19/474 (4%)
Query: 40 LDDAARAKFEN---ELDSFFTLFRRYLVEKSSRTTLEWDKIKSPNPDEVVKYEIISQQ-- 94
L A+ +FE+ +LD F LF R+L EK +++W KI+ P D + YE I +
Sbjct: 60 LTTASSHEFEHTKKDLDGFRKLFHRFLQEKGP--SVDWGKIQRPPEDSIQPYEKIKARGL 117
Query: 95 PENVSN-LSKLAVLKLNGGLGTSMGCVGPKSVIEVREGNTFLDLSVRQIEYLNRQYDSDV 153
P+N+S+ L+KL V+KLNGGLGTSMGC GPKS+I VR NTFLDL+V+QIE+LN+ Y++DV
Sbjct: 118 PDNISSVLNKLVVVKLNGGLGTSMGCKGPKSLIGVRNENTFLDLTVQQIEHLNKTYNTDV 177
Query: 154 PLLLMNSFNTDKDTEHLIKKYSANRIRIRSFNQSRFPRVYKDSLLPVPTEYDSP---LDA 210
PL+LMNSFNTD+DT+ +++KY+ R++I +FNQSR+PR+ K+SLLPV + +A
Sbjct: 178 PLVLMNSFNTDEDTKKILQKYNHCRVKIYTFNQSRYPRINKESLLPVAKDVSYSGENTEA 237
Query: 211 WYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDNLGATVDLKILNHMIE----TGAE 266
WYPPGHGD++ S + SG LD I +G+E +FVSN DNLGATVDL ILNH++ E
Sbjct: 238 WYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNIDNLGATVDLYILNHLMNPPNGKRCE 297
Query: 267 YIMELTDKTRADVKGGTLISYDGQVRLLEVAQVPKEHIDEFKNIRKFTNFNTNNLWINLK 326
++ME+T+KTRADVKGGTL Y+G++RL+E+AQVPK H+DEFK++ KF FNTNNLWI+L
Sbjct: 298 FVMEVTNKTRADVKGGTLTQYEGKLRLVEIAQVPKAHVDEFKSVSKFKIFNTNNLWISLA 357
Query: 327 AVKRLIESSNLEMEIIPNQKTITRDGHEINVLQLETACGAAIRHFDGAHGVVVPRSRFLP 386
AVKRL E + ++MEII N KT+ DG +NV+QLETA GAAI+ F+ + G+ VPRSRFLP
Sbjct: 358 AVKRLQEQNAIDMEIIVNAKTL--DGG-LNVIQLETAVGAAIKSFENSLGINVPRSRFLP 414
Query: 387 VKTCSDLLLVKSDLFRLEHGSLKLDPSRFGPN-PLIKLGSHFKKVSGFNARIPHIPKIVE 445
VKT SDLLLV S+L+ L GSL + R P PL+KLGS F KV + R IP ++E
Sbjct: 415 VKTTSDLLLVMSNLYSLNAGSLTMSEKREFPTVPLVKLGSSFTKVQDYLRRFESIPDMLE 474
Query: 446 LDHLTITGNVFLGKDVTLRGTVIIVCSDGHKIDIPNGSILENVVVTGNLQILEH 499
LDHLT++G+V GK+V+L+GTVII+ + G +IDIP G++LEN +V+GNL+IL+H
Sbjct: 475 LDHLTVSGDVTFGKNVSLKGTVIIIANHGDRIDIPPGAVLENKIVSGNLRILDH 528
>5WEG-A nrPDB
Length = 476
Score = 500 bits (1288), Expect = e-142, Method: Compositional matrix adjust.
Identities = 265/468 (56%), Positives = 342/468 (73%), Gaps = 16/468 (3%)
Query: 31 LNKL-ADSSKLDDAARAKFENELDSFFTLFRRYLVEKSSRTTLEWDKIKSPNPDEVVKYE 89
L+KL A+ +KLD + ENE F +L RYL ++ + +EW KI++P + VV Y+
Sbjct: 15 LDKLRAEVAKLDQIS----ENEKAGFISLVSRYLSGEAEQ--IEWSKIQTPTDEVVVPYD 68
Query: 90 IISQQPENVSN----LSKLAVLKLNGGLGTSMGCVGPKSVIEVREGNTFLDLSVRQIEYL 145
++ PE++ L KL VLKLNGGLGT+MGC GPKSVIEVR G TFLDL V QIE L
Sbjct: 69 TLASPPEDLEETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGFTFLDLIVIQIESL 128
Query: 146 NRQYDSDVPLLLMNSFNTDKDTEHLIKKYSANRIRIRSFNQSRFPRVYKDSLLPVPTEYD 205
N++Y VPLLLMNSFNT DT+ +++KYS + I I +FNQS++PR+ + LP+P++
Sbjct: 129 NKKYGCSVPLLLMNSFNTHDDTQKIVEKYSNSNIEIHTFNQSQYPRIVTEDFLPLPSKGK 188
Query: 206 SPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDNLGATVDLKILNHMIETGA 265
S D WYPPGHGD+F SL+ SG+LD L+AQG+E +F++N DNLGA VD+KILNH+I
Sbjct: 189 SGKDGWYPPGHGDVFPSLNNSGKLDILLAQGKEYVFIANSDNLGAIVDIKILNHLINNQN 248
Query: 266 EYIMELTDKTRADVKGGTLISYDGQVRLLEVAQVPKEHIDEFKNIRKFTNFNTNNLWINL 325
EY ME+T KT ADVKGGTLISY+G+V+LLE+AQVP EH++EFK+I KF FNTNNLW+NL
Sbjct: 249 EYCMEVTPKTLADVKGGTLISYEGRVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNL 308
Query: 326 KAVKRLIESSNLEMEIIPNQKTITRDGHEINVLQLETACGAAIRHFDGAHGVVVPRSRFL 385
KA+KRL+E+ L+MEIIPN K + DG + VLQLETA GAAIR FD A G+ VPRSRFL
Sbjct: 309 KAIKRLVEAEALKMEIIPNPKEV--DG--VKVLQLETAAGAAIRFFDKAIGINVPRSRFL 364
Query: 386 PVKTCSDLLLVKSDLFRLEHGSLKLDPSRFGP-NPLIKLGSHFKKVSGFNARIPHIPKIV 444
PVK SDLLLV+SDL+ L G + +P+R P NP I+LG FKKV+ F AR IP IV
Sbjct: 365 PVKATSDLLLVQSDLYTLVDGFVIRNPARANPANPSIELGPEFKKVANFLARFKSIPSIV 424
Query: 445 ELDHLTITGNVFLGKDVTLRGTVIIVCSDGHKIDIPNGSILENVVVTG 492
ELD L ++G+V+ G +TL+G V I G K++IP+G++LEN V G
Sbjct: 425 ELDSLKVSGDVWFGSGITLKGKVTITAKSGVKLEIPDGAVLENKDVNG 472
>2Q4J-A nrPDB
Length = 469
Score = 469 bits (1207), Expect = e-132, Method: Compositional matrix adjust.
Identities = 241/472 (51%), Positives = 327/472 (69%), Gaps = 21/472 (4%)
Query: 26 QMRNALNKLADSSKLDDAARAKFENELDSFFTLFRRYLVEKSSRTTLEWDKIKSPNPDEV 85
Q+++A++ L + S E+E F +L RYL ++ +EW KI++P + V
Sbjct: 10 QLKSAVDGLTEMS----------ESEKSGFISLVSRYLSGEAQH--IEWSKIQTPTDEIV 57
Query: 86 VKYEIISQQPENVSNLSKLAVLKL----NGGLGTSMGCVGPKSVIEVREGNTFLDLSVRQ 141
V YE ++ ++V+ L + NGGLGT+MGC GPKSVIEVR+G TFLDL V Q
Sbjct: 58 VPYEKMTPVSQDVAETKNLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRDGLTFLDLIVIQ 117
Query: 142 IEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKKYSANRIRIRSFNQSRFPRVYKDSLLPVP 201
IE LN +Y VPL+LMNSFNT DT +++KY+ + + I +FNQS++PRV D +P P
Sbjct: 118 IENLNNKYGCKVPLVLMNSFNTHDDTHKIVEKYTNSNVDIHTFNQSKYPRVVADEFVPWP 177
Query: 202 TEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDNLGATVDLKILNHMI 261
++ + + WYPPGHGD+F +L SG+LD ++QG+E +FV+N DNLGA VDL IL H+I
Sbjct: 178 SKGKTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLTILKHLI 237
Query: 262 ETGAEYIMELTDKTRADVKGGTLISYDGQVRLLEVAQVPKEHIDEFKNIRKFTNFNTNNL 321
+ EY ME+T KT ADVKGGTLISY+G+V+LLE+AQVP EH++EFK+I KF FNTNNL
Sbjct: 238 QNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNL 297
Query: 322 WINLKAVKRLIESSNLEMEIIPNQKTITRDGHEINVLQLETACGAAIRHFDGAHGVVVPR 381
W+NLKA+K+L+E+ L+MEIIPN K + DG + VLQLETA GAAIR FD A GV VPR
Sbjct: 298 WVNLKAIKKLVEADALKMEIIPNPKEV--DG--VKVLQLETAAGAAIRFFDNAIGVNVPR 353
Query: 382 SRFLPVKTCSDLLLVKSDLFRLEHGSLKLDPSRFGP-NPLIKLGSHFKKVSGFNARIPHI 440
SRFLPVK SDLLLV+SDL+ L G + + +R P NP I+LG FKKV+ F +R I
Sbjct: 354 SRFLPVKASSDLLLVQSDLYTLVDGFVTRNKARTNPSNPSIELGPEFKKVATFLSRFKSI 413
Query: 441 PKIVELDHLTITGNVFLGKDVTLRGTVIIVCSDGHKIDIPNGSILENVVVTG 492
P IVELD L ++G+V+ G + L+G V + G K++IP+ +++EN + G
Sbjct: 414 PSIVELDSLKVSGDVWFGSSIVLKGKVTVAAKSGVKLEIPDRAVVENKNING 465
>3GUE-A nrPDB
Length = 484
Score = 309 bits (792), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 180/434 (41%), Positives = 260/434 (59%), Gaps = 21/434 (4%)
Query: 78 KSPNPDEVVKY-EIISQQPENVSNLSKLAVLKLNGGLGTSMGCVGPKSVIEVREGNTFLD 136
KS +P E + + + I + EN + L + VLKLNGGLGT MG GPKS+++V+ G TFLD
Sbjct: 50 KSISPVESLPFLQGIETKGENTALLRQAVVLKLNGGLGTGMGLNGPKSLLQVKNGQTFLD 109
Query: 137 LSVRQIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKKYSANRIRIRS---FNQSRFPRVY 193
+ Q+E+ + + +VP +LMNSF+T +T++ ++KY S Q+R P++
Sbjct: 110 FTALQLEHFRQVRNCNVPFMLMNSFSTSGETKNFLRKYPTLYEVFDSDIELMQNRVPKIR 169
Query: 194 KDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDNLGATVD 253
+D+ PV E D P W PPGHGD++ L+ SG+LD L+ +G +F+SNGDNLGAT+D
Sbjct: 170 QDNFFPVTYEAD-PTCEWVPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDNLGATLD 228
Query: 254 LKILNHMIETGAEYIMELTDKTRADVKGGTLISYD------GQVR----LLEVAQVPKEH 303
+++L++M E ++ME+ +T +D KGG L D GQ R L E AQ PKE
Sbjct: 229 VRLLDYMHEKQLGFLMEVCRRTESDKKGGHLAYKDVIDETTGQTRRRFVLRESAQCPKED 288
Query: 304 IDEFKNIRKFTNFNTNNLWINLKAVKRLIES--SNLEMEIIPNQKTIT-RDGHEINVLQL 360
D F+NI K FNTNN+WINL +K++++ L + ++ N KT+ +D V QL
Sbjct: 289 EDSFQNIAKHCFFNTNNIWINLMELKKMMDEQLGVLRLPVMRNPKTVNPQDSQSTKVYQL 348
Query: 361 ETACGAAIRHFDGAHGVVVPRSRFLPVKTCSDLLLVKSDLFRL-EHGSLKLDPSRFGPNP 419
E A GAAI FD + VVVPR RF PVKTCSDLL ++SD +++ E L L R G P
Sbjct: 349 EVAMGAAISLFDRSEAVVVPRERFAPVKTCSDLLALRSDAYQVTEDQRLVLCEERNGKPP 408
Query: 420 LIKL-GSHFKKVSGFNARIP-HIPKIVELDHLTITGNVFLGKDVTLRGTVIIVCSDGHKI 477
I L G H+K + GF + +P + + LT+ G V G DV++RG V+I +
Sbjct: 409 AIDLDGEHYKMIDGFEKLVKGGVPSLRQCTSLTVRGLVEFGADVSVRGNVVIKNLKEEPL 468
Query: 478 DIPNGSILENVVVT 491
I +G +L+N VV
Sbjct: 469 IIGSGRVLDNEVVV 482
>4M2B-A nrPDB
Length = 505
Score = 273 bits (698), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 158/416 (37%), Positives = 239/416 (57%), Gaps = 26/416 (6%)
Query: 101 LSKLAVLKLNGGLGTSMGCVGPKSVIEVREGNTFLDLSVRQIEYLNRQYDSDVPLLLMNS 160
L VLKLNGGLGT MG K+++EV++G TFLD + Q++YL + + +LM+S
Sbjct: 73 LQSTVVLKLNGGLGTGMGLCDAKTLLEVKDGKTFLDFTALQVQYLRQHCSEHLRFMLMDS 132
Query: 161 FNTDKDTEHLIKKYSANRIRI----RSFNQSRFPRVYKDSLLPVPTEYDSPLDAWYPPGH 216
FNT T+ +K ++ Q++ P++ +D+L P ++P W PPGH
Sbjct: 133 FNTSASTKSFLKARYPWLYQVFDSEVELMQNQVPKILQDTLEPAAWA-ENPAYEWAPPGH 191
Query: 217 GDLFESLHVSGELDALIAQGREILFVSNGDNLGATVDLKILNHMIETGAEYIMELTDKTR 276
GD++ +L+ SG+L L+ QG +FVSNGDNLGAT+D ++L +M + +++ME+ +T
Sbjct: 192 GDIYTALYGSGKLQELVEQGYRYMFVSNGDNLGATIDKRVLAYMEKEKIDFLMEVCRRTE 251
Query: 277 ADVKGGTLI-------SYDGQ-------VRLLEVAQVPKEHIDEFKNIRKFTNFNTNNLW 322
+D KGG L DGQ + L E AQ PK ++ F++I K++ FNTNNLW
Sbjct: 252 SDKKGGHLARQTVYVKGKDGQPDAEKRVLDLRESAQCPKADMESFQDINKYSFFNTNNLW 311
Query: 323 INLKAVKRLIE--SSNLEMEIIPNQKTI-TRDGHEINVLQLETACGAAIRHFDGAHGVVV 379
I L + ++ L + +I N+KT+ + + V QLETA GAAI F+ A +VV
Sbjct: 312 IRLPVLLETMQEHGGTLPLPVIRNEKTVDSSNSASPKVYQLETAMGAAIAMFESASAIVV 371
Query: 380 PRSRFLPVKTCSDLLLVKSDLFRL-EHGSLKLDPSRFGPNPLIKLGS-HFKKVSGFNARI 437
PRSRF PVKTC+DLL ++SD + + + L LD G P++ L S H+K ++GF +
Sbjct: 372 PRSRFAPVKTCADLLALRSDAYVVTDDFRLVLDDRCHGHPPVVDLDSAHYKMMNGFEKLV 431
Query: 438 PH-IPKIVELDHLTITGNVFLGKDVTLRGTVIIVCSD-GHKIDIPNGSILENVVVT 491
H +P +VE +T+ G V G L GTV I +D IP+G+ L + +
Sbjct: 432 QHGVPSLVECKRVTVKGLVQFGAGNVLTGTVTIENTDSASAFVIPDGAKLNDTTAS 487
>1VM8-A nrPDB
Length = 534
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 129/292 (44%), Gaps = 31/292 (10%)
Query: 32 NKLADSSKLD---DAARAKFENELDSFFTLFRRYLVEKSSRTTLE-WDKIKSPNPDEVV- 86
N+L+++ +++ + FE EL+SFF R+ + E + E D P P +V+
Sbjct: 35 NELSEAQQMELYMELQAMNFE-ELNSFF---RKAIGEFDRSSHQEKVDARMEPVPRQVLG 90
Query: 87 -----KYEIISQQPENVSNLS--KLAVLKLNGGLGTSMGCVGPKSVIEVR--EGNTFLDL 137
+ ++ + + E +S +S K+AVL L GG GT +G PK + +V T +
Sbjct: 91 SATRDQEQLQAWESEGLSQISQNKVAVLLLAGGQGTRLGVSYPKGMYDVGLPSHKTLFQI 150
Query: 138 SVRQIEYLNRQYD------SDVPLLLMNSFNTDKDTEHLIKK---YSANRIRIRSFNQSR 188
+I L + + +P +M S T + T+ K + + + F Q
Sbjct: 151 QAERILKLQQLAEKHHGNKCTIPWYIMTSGRTMESTKEFFTKHKFFGLKKENVVFFQQGM 210
Query: 189 FPRVYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDNL 248
P + D + + + + P G+G L+ +L ++ + +G + V DN+
Sbjct: 211 LPAMSFDGKIILEEKNKVSM---APDGNGGLYRALAAQNIVEDMEQRGICSIHVYCVDNI 267
Query: 249 GATV-DLKILNHMIETGAEYIMELTDKTRADVKGGTLISYDGQVRLLEVAQV 299
V D + + I+ GA+ ++ +KT G + DG +++E +++
Sbjct: 268 LVKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGVYQVVEYSEI 319
>1JV1-A nrPDB
Length = 505
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 126/290 (43%), Gaps = 27/290 (9%)
Query: 32 NKLADSSKLDDAARAKFEN--ELDSFFTLFRRYLVEKSSRTTLEWDKIKSPNPDEVV--- 86
N+L ++ +++ A + N EL+ FF + S + + D P P EV+
Sbjct: 23 NELEEAQQVELYAELQAMNFEELNFFFQKAIEGFNQSSHQKNV--DARMEPVPREVLGSA 80
Query: 87 ---KYEIISQQPENVSNLS--KLAVLKLNGGLGTSMGCVGPKSVIEVR--EGNTFLDLSV 139
+ ++ + + E + +S K+AVL L GG GT +G PK + +V T +
Sbjct: 81 TRDQDQLQAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSRKTLFQIQA 140
Query: 140 RQIEYLNR---QYDSD---VPLLLMNSFNTDKDTEHLIKK---YSANRIRIRSFNQSRFP 190
+I L + +Y + +P +M S T + T+ K + + + F Q P
Sbjct: 141 ERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEFFTKHKYFGLKKENVIFFQQGMLP 200
Query: 191 RVYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDNLGA 250
+ D + + + + P G+G L+ +L ++ + +G + V DN+
Sbjct: 201 AMSFDGKIILEEKNKVSMA---PDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILV 257
Query: 251 TV-DLKILNHMIETGAEYIMELTDKTRADVKGGTLISYDGQVRLLEVAQV 299
V D + + I+ GA+ ++ +KT G + DG +++E +++
Sbjct: 258 KVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGVYQVVEYSEI 307
>4BMA-A nrPDB
Length = 509
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/241 (20%), Positives = 101/241 (41%), Gaps = 19/241 (7%)
Query: 102 SKLAVLKLNGGLGTSMGCVGPKSVIEV--REGNTFLDLSVRQIEYLN------RQYDSDV 153
+K+AV+ + GG GT +G PK ++ + + +I L ++ +
Sbjct: 127 NKVAVVLMAGGQGTRLGSSAPKGCFDIGLPSHKSLFQIQAERIAKLQLLAQRISGKEAVI 186
Query: 154 PLLLMNSFNTDKDTEHLI---KKYSANRIRIRSFNQSRFPRVYKDSLLPVPTEYDSPLDA 210
P +M S T K TE K + N+ + F Q P + + + + +++ A
Sbjct: 187 PWYVMTSGPTRKPTEEFFEQHKYFGLNKSDVIIFEQGVLPCISNEGKILMESKFKV---A 243
Query: 211 WYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDN-LGATVDLKILNHMIETGAEYIM 269
P G+G ++++L SG + + +G E + DN L D + +
Sbjct: 244 VAPDGNGGIYQALLTSGVREDMRKRGIEHIHTYCVDNCLVKVADPVFIGFAASKQVDIAT 303
Query: 270 ELTDKTRADVKGGTLISYDGQVRLLEVAQVPKEHID----EFKNIRKFTNFNTNNLWINL 325
++ K A G ++ +G+ ++E +++ KE + + ++ KF N N + +
Sbjct: 304 KVVRKRNATESVGLILQKNGKPDVVEYSEIDKETAEAKDPKQPDVLKFRAANIVNHYYSF 363
Query: 326 K 326
K
Sbjct: 364 K 364
>3OC9-A nrPDB
Length = 405
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 98/229 (42%), Gaps = 28/229 (12%)
Query: 89 EIISQQPENVSNLSKLAVLKLNGGLGTSMGCVGPKSV----------IEVREGNTFLDLS 138
E+ISQ K A++ GG G+ +G PK + I L L
Sbjct: 29 ELISQ--------GKTALITPAGGQGSRLGFEHPKGMFVLPFEIPKSIFQMTSERLLRLQ 80
Query: 139 VRQIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKK---YSANRIRIRSFNQSRFPRV-YK 194
EY + Q + + LM + T ++ + K+ + + +I F Q P V +
Sbjct: 81 ELASEY-SHQKNVMIHWFLMTNEETIEEINNYFKEHQYFGLSSEQIHCFPQGMLPVVDFN 139
Query: 195 DSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDN-LGATVD 253
+L + D P A P GHG LF++L +G L+ + +G + N DN L VD
Sbjct: 140 GKILY--EKKDKPYMA--PNGHGGLFKALKDNGILEFMNEKGIKYSVAHNVDNILCKDVD 195
Query: 254 LKILNHMIETGAEYIMELTDKTRADVKGGTLISYDGQVRLLEVAQVPKE 302
++ +M +E +++ K + K G L+ +++++E ++ E
Sbjct: 196 PNMIGYMDLLQSEICIKIVKKGFKEEKVGVLVKEQERIKVVEYTELTDE 244
>2YQJ-A nrPDB
Length = 486
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 15/147 (10%)
Query: 103 KLAVLKLNGGLGTSMGCVGPKSV--IEVREGNTFLDLS---VRQIEYLNRQY--DSDVPL 155
++AVL + GG GT +G PK IE+ + + + +IE L +QY + P+
Sbjct: 103 EVAVLLMAGGQGTRLGSSAPKGCFNIELPSQKSLFQIQAEKILKIEQLAQQYLKSTKKPI 162
Query: 156 L---LMNSFNTDKDTEHLI---KKYSANRIRIRSFNQSRFPRVYKDSLLPVPTEYDSPLD 209
+ +M S T TE + N ++ FNQ P + + E + +
Sbjct: 163 INWYIMTSGPTRNATESFFIENNYFGLNSHQVIFFNQGTLP-CFNLQGNKILLELKNSI- 220
Query: 210 AWYPPGHGDLFESLHVSGELDALIAQG 236
P G+G L+++L +G LD L ++G
Sbjct: 221 CQSPDGNGGLYKALKDNGILDDLNSKG 247
>1LFW-A nrPDB
Length = 470
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 13/108 (12%)
Query: 254 LKILNHM--IETGAEYI-----MELTDKTR------ADVKGGTLISYDGQVRLLEVAQVP 300
L I+ HM + G + ME+ ++ R AD KG +L +Y G + L E P
Sbjct: 82 LGIIGHMDVVPAGEGWTRDPFKMEIDEEGRIYGRGSADDKGPSLTAYYGMLLLKEAGFKP 141
Query: 301 KEHIDEFKNIRKFTNFNTNNLWINLKAVKRLIESSNLEMEIIPNQKTI 348
K+ ID + TN+ + ++ + ++ S + E II ++ I
Sbjct: 142 KKKIDFVLGTNEETNWVGIDYYLKHEPTPDIVFSPDAEYPIINGEQGI 189
>2N5T-A nrPDB
Length = 575
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 318 TNNLWINLKAVKRLIESSNLEMEIIPNQKTITRDGHEINVLQ-LETACGAAIRHFDGAHG 376
TN + ++AV+ + S E+ + + IT DGH++ V + T +GA G
Sbjct: 232 TNEVIDKMRAVQEQVASEKAELAKLKDLPAITLDGHQVEVCANIGTVRDVEGAERNGAEG 291
Query: 377 VVVPRSRFL 385
V + R+ FL
Sbjct: 292 VGLYRTEFL 300
>4ZBK-B nrPDB
Length = 189
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 284 LISYDGQVRLLEVAQVPKEHIDEFKNIRKFTNFNTNNLWINLKAVKRLIESSNLEMEIIP 343
++ DGQVR++ V I + N LW VKR +E L +++P
Sbjct: 78 MVGQDGQVRMV-VGAAGGTQITTATALAIIYN-----LWFGYD-VKRAVEEPRLHNQLLP 130
Query: 344 NQKTITRDGHEINVLQLET 362
N T+ R+ + LET
Sbjct: 131 NVTTVERNIDQAVTAALET 149
>5JAA-A nrPDB
Length = 103
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 63 LVEKSSRTTLEWDKIKS-PNPDEVVKYEIISQQPENVSNLSKL 104
L+ SSRT W++ +S PN V +++ + PE +S++++L
Sbjct: 61 LLHTSSRTLENWEQGRSVPNGQAVTLLKLVQRHPETLSHIAEL 103
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
2I5K-A nrPDB 754 0.0
5WEG-A nrPDB 640 0.0
2Q4J-A nrPDB 637 0.0
3R2W-A nrPDB 627 e-180
3GUE-A nrPDB 564 e-161
4M2B-A nrPDB 530 e-151
1JV1-A nrPDB 329 1e-90
1VM8-A nrPDB 326 2e-89
4BMA-A nrPDB 280 1e-75
Sequences not found previously or not previously below threshold:
2YQJ-A nrPDB 194 7e-50
3OC9-A nrPDB 141 8e-34
4BQH-A nrPDB 135 4e-32
3OH0-A nrPDB 69 5e-12
4PJ1-A nrPDB 35 0.093
1JNE-A nrPDB 35 0.093
4MYB-A nrPDB 33 0.35
1Y7H-A nrPDB 32 0.54
4CVH-A nrPDB 32 0.65
5H7J-A nrPDB 31 1.3
3PMO-A nrPDB 30 1.9
5X7Y-A nrPDB 30 2.7
1BYG-A nrPDB 29 5.3
1SVT-O nrPDB 28 9.4
3PS9-A nrPDB 28 9.9
>2I5K-A nrPDB
Length = 488
Score = 754 bits (1946), Expect = 0.0, Method: Composition-based stats.
Identities = 488/488 (100%), Positives = 488/488 (100%)
Query: 12 TYAFESNTNSVAASQMRNALNKLADSSKLDDAARAKFENELDSFFTLFRRYLVEKSSRTT 71
TYAFESNTNSVAASQMRNALNKLADSSKLDDAARAKFENELDSFFTLFRRYLVEKSSRTT
Sbjct: 1 TYAFESNTNSVAASQMRNALNKLADSSKLDDAARAKFENELDSFFTLFRRYLVEKSSRTT 60
Query: 72 LEWDKIKSPNPDEVVKYEIISQQPENVSNLSKLAVLKLNGGLGTSMGCVGPKSVIEVREG 131
LEWDKIKSPNPDEVVKYEIISQQPENVSNLSKLAVLKLNGGLGTSMGCVGPKSVIEVREG
Sbjct: 61 LEWDKIKSPNPDEVVKYEIISQQPENVSNLSKLAVLKLNGGLGTSMGCVGPKSVIEVREG 120
Query: 132 NTFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKKYSANRIRIRSFNQSRFPR 191
NTFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKKYSANRIRIRSFNQSRFPR
Sbjct: 121 NTFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKKYSANRIRIRSFNQSRFPR 180
Query: 192 VYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDNLGAT 251
VYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDNLGAT
Sbjct: 181 VYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDNLGAT 240
Query: 252 VDLKILNHMIETGAEYIMELTDKTRADVKGGTLISYDGQVRLLEVAQVPKEHIDEFKNIR 311
VDLKILNHMIETGAEYIMELTDKTRADVKGGTLISYDGQVRLLEVAQVPKEHIDEFKNIR
Sbjct: 241 VDLKILNHMIETGAEYIMELTDKTRADVKGGTLISYDGQVRLLEVAQVPKEHIDEFKNIR 300
Query: 312 KFTNFNTNNLWINLKAVKRLIESSNLEMEIIPNQKTITRDGHEINVLQLETACGAAIRHF 371
KFTNFNTNNLWINLKAVKRLIESSNLEMEIIPNQKTITRDGHEINVLQLETACGAAIRHF
Sbjct: 301 KFTNFNTNNLWINLKAVKRLIESSNLEMEIIPNQKTITRDGHEINVLQLETACGAAIRHF 360
Query: 372 DGAHGVVVPRSRFLPVKTCSDLLLVKSDLFRLEHGSLKLDPSRFGPNPLIKLGSHFKKVS 431
DGAHGVVVPRSRFLPVKTCSDLLLVKSDLFRLEHGSLKLDPSRFGPNPLIKLGSHFKKVS
Sbjct: 361 DGAHGVVVPRSRFLPVKTCSDLLLVKSDLFRLEHGSLKLDPSRFGPNPLIKLGSHFKKVS 420
Query: 432 GFNARIPHIPKIVELDHLTITGNVFLGKDVTLRGTVIIVCSDGHKIDIPNGSILENVVVT 491
GFNARIPHIPKIVELDHLTITGNVFLGKDVTLRGTVIIVCSDGHKIDIPNGSILENVVVT
Sbjct: 421 GFNARIPHIPKIVELDHLTITGNVFLGKDVTLRGTVIIVCSDGHKIDIPNGSILENVVVT 480
Query: 492 GNLQILEH 499
GNLQILEH
Sbjct: 481 GNLQILEH 488
>5WEG-A nrPDB
Length = 476
Score = 640 bits (1651), Expect = 0.0, Method: Composition-based stats.
Identities = 260/468 (55%), Positives = 338/468 (72%), Gaps = 16/468 (3%)
Query: 31 LNKL-ADSSKLDDAARAKFENELDSFFTLFRRYLVEKSSRTTLEWDKIKSPNPDEVVKYE 89
L+KL A+ +KLD + ENE F +L RYL ++ + +EW KI++P + VV Y+
Sbjct: 15 LDKLRAEVAKLDQIS----ENEKAGFISLVSRYLSGEAEQ--IEWSKIQTPTDEVVVPYD 68
Query: 90 IISQQPENVSNLSKLAVLKL----NGGLGTSMGCVGPKSVIEVREGNTFLDLSVRQIEYL 145
++ PE++ KL + NGGLGT+MGC GPKSVIEVR G TFLDL V QIE L
Sbjct: 69 TLASPPEDLEETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGFTFLDLIVIQIESL 128
Query: 146 NRQYDSDVPLLLMNSFNTDKDTEHLIKKYSANRIRIRSFNQSRFPRVYKDSLLPVPTEYD 205
N++Y VPLLLMNSFNT DT+ +++KYS + I I +FNQS++PR+ + LP+P++
Sbjct: 129 NKKYGCSVPLLLMNSFNTHDDTQKIVEKYSNSNIEIHTFNQSQYPRIVTEDFLPLPSKGK 188
Query: 206 SPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDNLGATVDLKILNHMIETGA 265
S D WYPPGHGD+F SL+ SG+LD L+AQG+E +F++N DNLGA VD+KILNH+I
Sbjct: 189 SGKDGWYPPGHGDVFPSLNNSGKLDILLAQGKEYVFIANSDNLGAIVDIKILNHLINNQN 248
Query: 266 EYIMELTDKTRADVKGGTLISYDGQVRLLEVAQVPKEHIDEFKNIRKFTNFNTNNLWINL 325
EY ME+T KT ADVKGGTLISY+G+V+LLE+AQVP EH++EFK+I KF FNTNNLW+NL
Sbjct: 249 EYCMEVTPKTLADVKGGTLISYEGRVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNL 308
Query: 326 KAVKRLIESSNLEMEIIPNQKTITRDGHEINVLQLETACGAAIRHFDGAHGVVVPRSRFL 385
KA+KRL+E+ L+MEIIPN K + DG + VLQLETA GAAIR FD A G+ VPRSRFL
Sbjct: 309 KAIKRLVEAEALKMEIIPNPKEV--DG--VKVLQLETAAGAAIRFFDKAIGINVPRSRFL 364
Query: 386 PVKTCSDLLLVKSDLFRLEHGSLKLDPSRFGP-NPLIKLGSHFKKVSGFNARIPHIPKIV 444
PVK SDLLLV+SDL+ L G + +P+R P NP I+LG FKKV+ F AR IP IV
Sbjct: 365 PVKATSDLLLVQSDLYTLVDGFVIRNPARANPANPSIELGPEFKKVANFLARFKSIPSIV 424
Query: 445 ELDHLTITGNVFLGKDVTLRGTVIIVCSDGHKIDIPNGSILENVVVTG 492
ELD L ++G+V+ G +TL+G V I G K++IP+G++LEN V G
Sbjct: 425 ELDSLKVSGDVWFGSGITLKGKVTITAKSGVKLEIPDGAVLENKDVNG 472
>2Q4J-A nrPDB
Length = 469
Score = 637 bits (1642), Expect = 0.0, Method: Composition-based stats.
Identities = 241/472 (51%), Positives = 327/472 (69%), Gaps = 21/472 (4%)
Query: 26 QMRNALNKLADSSKLDDAARAKFENELDSFFTLFRRYLVEKSSRTTLEWDKIKSPNPDEV 85
Q+++A++ L + S E+E F +L RYL ++ +EW KI++P + V
Sbjct: 10 QLKSAVDGLTEMS----------ESEKSGFISLVSRYLSGEAQ--HIEWSKIQTPTDEIV 57
Query: 86 VKYEIISQQPENVSNLSKLAVLKL----NGGLGTSMGCVGPKSVIEVREGNTFLDLSVRQ 141
V YE ++ ++V+ L + NGGLGT+MGC GPKSVIEVR+G TFLDL V Q
Sbjct: 58 VPYEKMTPVSQDVAETKNLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRDGLTFLDLIVIQ 117
Query: 142 IEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKKYSANRIRIRSFNQSRFPRVYKDSLLPVP 201
IE LN +Y VPL+LMNSFNT DT +++KY+ + + I +FNQS++PRV D +P P
Sbjct: 118 IENLNNKYGCKVPLVLMNSFNTHDDTHKIVEKYTNSNVDIHTFNQSKYPRVVADEFVPWP 177
Query: 202 TEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDNLGATVDLKILNHMI 261
++ + + WYPPGHGD+F +L SG+LD ++QG+E +FV+N DNLGA VDL IL H+I
Sbjct: 178 SKGKTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLTILKHLI 237
Query: 262 ETGAEYIMELTDKTRADVKGGTLISYDGQVRLLEVAQVPKEHIDEFKNIRKFTNFNTNNL 321
+ EY ME+T KT ADVKGGTLISY+G+V+LLE+AQVP EH++EFK+I KF FNTNNL
Sbjct: 238 QNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNL 297
Query: 322 WINLKAVKRLIESSNLEMEIIPNQKTITRDGHEINVLQLETACGAAIRHFDGAHGVVVPR 381
W+NLKA+K+L+E+ L+MEIIPN K + DG + VLQLETA GAAIR FD A GV VPR
Sbjct: 298 WVNLKAIKKLVEADALKMEIIPNPKEV--DG--VKVLQLETAAGAAIRFFDNAIGVNVPR 353
Query: 382 SRFLPVKTCSDLLLVKSDLFRLEHGSLKLDPSRFGP-NPLIKLGSHFKKVSGFNARIPHI 440
SRFLPVK SDLLLV+SDL+ L G + + +R P NP I+LG FKKV+ F +R I
Sbjct: 354 SRFLPVKASSDLLLVQSDLYTLVDGFVTRNKARTNPSNPSIELGPEFKKVATFLSRFKSI 413
Query: 441 PKIVELDHLTITGNVFLGKDVTLRGTVIIVCSDGHKIDIPNGSILENVVVTG 492
P IVELD L ++G+V+ G + L+G V + G K++IP+ +++EN + G
Sbjct: 414 PSIVELDSLKVSGDVWFGSSIVLKGKVTVAAKSGVKLEIPDRAVVENKNING 465
>3R2W-A nrPDB
Length = 528
Score = 627 bits (1617), Expect = e-180, Method: Composition-based stats.
Identities = 268/498 (53%), Positives = 363/498 (72%), Gaps = 26/498 (5%)
Query: 23 AASQMRNALNKLADSSK-------LDDAARAKFEN---ELDSFFTLFRRYLVEKSSRTTL 72
ASQ + + + + S L A+ +FE+ +LD F LF R+L EK ++
Sbjct: 36 GASQFQEVIRQELELSVKKELEKILTTASSHEFEHTKKDLDGFRKLFHRFLQEKGP--SV 93
Query: 73 EWDKIKSPNPDEVVKYEIISQQ--PENVSN-LSKLAVLKLNGGLGTSMGCVGPKSVIEVR 129
+W KI+ P D + YE I + P+N+S+ L+KL V+KLNGGLGTSMGC GPKS+I VR
Sbjct: 94 DWGKIQRPPEDSIQPYEKIKARGLPDNISSVLNKLVVVKLNGGLGTSMGCKGPKSLIGVR 153
Query: 130 EGNTFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKKYSANRIRIRSFNQSRF 189
NTFLDL+V+QIE+LN+ Y++DVPL+LMNSFNTD+DT+ +++KY+ R++I +FNQSR+
Sbjct: 154 NENTFLDLTVQQIEHLNKTYNTDVPLVLMNSFNTDEDTKKILQKYNHCRVKIYTFNQSRY 213
Query: 190 PRVYKDSLLPVPTEYDSP---LDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGD 246
PR+ K+SLLPV + +AWYPPGHGD++ S + SG LD I +G+E +FVSN D
Sbjct: 214 PRINKESLLPVAKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNID 273
Query: 247 NLGATVDLKILNHMIE----TGAEYIMELTDKTRADVKGGTLISYDGQVRLLEVAQVPKE 302
NLGATVDL ILNH++ E++ME+T+KTRADVKGGTL Y+G++RL+E+AQVPK
Sbjct: 274 NLGATVDLYILNHLMNPPNGKRCEFVMEVTNKTRADVKGGTLTQYEGKLRLVEIAQVPKA 333
Query: 303 HIDEFKNIRKFTNFNTNNLWINLKAVKRLIESSNLEMEIIPNQKTITRDGHEINVLQLET 362
H+DEFK++ KF FNTNNLWI+L AVKRL E + ++MEII N KT+ DG +NV+QLET
Sbjct: 334 HVDEFKSVSKFKIFNTNNLWISLAAVKRLQEQNAIDMEIIVNAKTL--DGG-LNVIQLET 390
Query: 363 ACGAAIRHFDGAHGVVVPRSRFLPVKTCSDLLLVKSDLFRLEHGSLKLDPSRFGPN-PLI 421
A GAAI+ F+ + G+ VPRSRFLPVKT SDLLLV S+L+ L GSL + R P PL+
Sbjct: 391 AVGAAIKSFENSLGINVPRSRFLPVKTTSDLLLVMSNLYSLNAGSLTMSEKREFPTVPLV 450
Query: 422 KLGSHFKKVSGFNARIPHIPKIVELDHLTITGNVFLGKDVTLRGTVIIVCSDGHKIDIPN 481
KLGS F KV + R IP ++ELDHLT++G+V GK+V+L+GTVII+ + G +IDIP
Sbjct: 451 KLGSSFTKVQDYLRRFESIPDMLELDHLTVSGDVTFGKNVSLKGTVIIIANHGDRIDIPP 510
Query: 482 GSILENVVVTGNLQILEH 499
G++LEN +V+GNL+IL+H
Sbjct: 511 GAVLENKIVSGNLRILDH 528
>3GUE-A nrPDB
Length = 484
Score = 564 bits (1454), Expect = e-161, Method: Composition-based stats.
Identities = 187/477 (39%), Positives = 272/477 (57%), Gaps = 25/477 (5%)
Query: 35 ADSSKLDDAARAKFENELDSFFTLFRRYLVEKSSRTTLEWDKIKSPNPDEVVKY-EIISQ 93
A + L+ + E E L + LV K + KS +P E + + + I
Sbjct: 11 AALACLEKMQASGVE-EKCIHIFLIQHALVRKGETGYIP---EKSISPVESLPFLQGIET 66
Query: 94 QPENVSNLSKLAVLKLNGGLGTSMGCVGPKSVIEVREGNTFLDLSVRQIEYLNRQYDSDV 153
+ EN + L + VLKLNGGLGT MG GPKS+++V+ G TFLD + Q+E+ + + +V
Sbjct: 67 KGENTALLRQAVVLKLNGGLGTGMGLNGPKSLLQVKNGQTFLDFTALQLEHFRQVRNCNV 126
Query: 154 PLLLMNSFNTDKDTEHLIKKYSANRIRI---RSFNQSRFPRVYKDSLLPVPTEYDSPLDA 210
P +LMNSF+T +T++ ++KY Q+R P++ +D+ PV E D P
Sbjct: 127 PFMLMNSFSTSGETKNFLRKYPTLYEVFDSDIELMQNRVPKIRQDNFFPVTYEAD-PTCE 185
Query: 211 WYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDNLGATVDLKILNHMIETGAEYIME 270
W PPGHGD++ L+ SG+LD L+ +G +F+SNGDNLGAT+D+++L++M E ++ME
Sbjct: 186 WVPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDNLGATLDVRLLDYMHEKQLGFLME 245
Query: 271 LTDKTRADVKGGTLISYD------GQVR----LLEVAQVPKEHIDEFKNIRKFTNFNTNN 320
+ +T +D KGG L D GQ R L E AQ PKE D F+NI K FNTNN
Sbjct: 246 VCRRTESDKKGGHLAYKDVIDETTGQTRRRFVLRESAQCPKEDEDSFQNIAKHCFFNTNN 305
Query: 321 LWINLKAVKRLIES--SNLEMEIIPNQKTIT-RDGHEINVLQLETACGAAIRHFDGAHGV 377
+WINL +K++++ L + ++ N KT+ +D V QLE A GAAI FD + V
Sbjct: 306 IWINLMELKKMMDEQLGVLRLPVMRNPKTVNPQDSQSTKVYQLEVAMGAAISLFDRSEAV 365
Query: 378 VVPRSRFLPVKTCSDLLLVKSDLFRL-EHGSLKLDPSRFGPNPLIKL-GSHFKKVSGFNA 435
VVPR RF PVKTCSDLL ++SD +++ E L L R G P I L G H+K + GF
Sbjct: 366 VVPRERFAPVKTCSDLLALRSDAYQVTEDQRLVLCEERNGKPPAIDLDGEHYKMIDGFEK 425
Query: 436 RIP-HIPKIVELDHLTITGNVFLGKDVTLRGTVIIVCSDGHKIDIPNGSILENVVVT 491
+ +P + + LT+ G V G DV++RG V+I + I +G +L+N VV
Sbjct: 426 LVKGGVPSLRQCTSLTVRGLVEFGADVSVRGNVVIKNLKEEPLIIGSGRVLDNEVVV 482
>4M2B-A nrPDB
Length = 505
Score = 530 bits (1366), Expect = e-151, Method: Composition-based stats.
Identities = 167/491 (34%), Positives = 265/491 (53%), Gaps = 30/491 (6%)
Query: 27 MRNALNKLADSSKLDDAARAKFENELDSFFTLFRRY-LVEKSSRTTLEWDKIKSPNPDEV 85
M N + L+ +++ + T ++ +V K ++ I D +
Sbjct: 1 MENDMKSLSAAAQACVKKMRDAKVNEACIRTFIAQHVMVSKGETGSIPDSAIM--PVDSL 58
Query: 86 VKYEIISQQPENVSNLSKLAVLKLNGGLGTSMGCVGPKSVIEVREGNTFLDLSVRQIEYL 145
+ ++ + +N + L VLKLNGGLGT MG K+++EV++G TFLD + Q++YL
Sbjct: 59 DALDSLTIECDN-AVLQSTVVLKLNGGLGTGMGLCDAKTLLEVKDGKTFLDFTALQVQYL 117
Query: 146 NRQYDSDVPLLLMNSFNTDKDTEHLIKKYSANRIRI----RSFNQSRFPRVYKDSLLPVP 201
+ + +LM+SFNT T+ +K ++ Q++ P++ +D+L P
Sbjct: 118 RQHCSEHLRFMLMDSFNTSASTKSFLKARYPWLYQVFDSEVELMQNQVPKILQDTLEPAA 177
Query: 202 TEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDNLGATVDLKILNHMI 261
++P W PPGHGD++ +L+ SG+L L+ QG +FVSNGDNLGAT+D ++L +M
Sbjct: 178 WA-ENPAYEWAPPGHGDIYTALYGSGKLQELVEQGYRYMFVSNGDNLGATIDKRVLAYME 236
Query: 262 ETGAEYIMELTDKTRADVKGGTLIS-------YDGQV-------RLLEVAQVPKEHIDEF 307
+ +++ME+ +T +D KGG L DGQ L E AQ PK ++ F
Sbjct: 237 KEKIDFLMEVCRRTESDKKGGHLARQTVYVKGKDGQPDAEKRVLDLRESAQCPKADMESF 296
Query: 308 KNIRKFTNFNTNNLWINLKAVKRLIE--SSNLEMEIIPNQKTI-TRDGHEINVLQLETAC 364
++I K++ FNTNNLWI L + ++ L + +I N+KT+ + + V QLETA
Sbjct: 297 QDINKYSFFNTNNLWIRLPVLLETMQEHGGTLPLPVIRNEKTVDSSNSASPKVYQLETAM 356
Query: 365 GAAIRHFDGAHGVVVPRSRFLPVKTCSDLLLVKSDLFRL-EHGSLKLDPSRFGPNPLIKL 423
GAAI F+ A +VVPRSRF PVKTC+DLL ++SD + + + L LD G P++ L
Sbjct: 357 GAAIAMFESASAIVVPRSRFAPVKTCADLLALRSDAYVVTDDFRLVLDDRCHGHPPVVDL 416
Query: 424 GS-HFKKVSGFNARIPH-IPKIVELDHLTITGNVFLGKDVTLRGTVIIVCSD-GHKIDIP 480
S H+K ++GF + H +P +VE +T+ G V G L GTV I +D IP
Sbjct: 417 DSAHYKMMNGFEKLVQHGVPSLVECKRVTVKGLVQFGAGNVLTGTVTIENTDSASAFVIP 476
Query: 481 NGSILENVVVT 491
+G+ L + +
Sbjct: 477 DGAKLNDTTAS 487
>1JV1-A nrPDB
Length = 505
Score = 329 bits (844), Expect = 1e-90, Method: Composition-based stats.
Identities = 64/326 (19%), Positives = 136/326 (41%), Gaps = 29/326 (8%)
Query: 32 NKLADSSKLDDAARAKFEN--ELDSFFTLFRRYLVEKSSRTTLEWDKIKSPNPDEVV--- 86
N+L ++ +++ A + N EL+ FF + S + + D P P EV+
Sbjct: 23 NELEEAQQVELYAELQAMNFEELNFFFQKAIEGFNQSSHQKNV--DARMEPVPREVLGSA 80
Query: 87 ---KYEIISQQPENVSNL--SKLAVLKLNGGLGTSMGCVGPKSVIEV--REGNTFLDLSV 139
+ ++ + + E + + +K+AVL L GG GT +G PK + +V T +
Sbjct: 81 TRDQDQLQAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSRKTLFQIQA 140
Query: 140 RQIEYLNRQYD------SDVPLLLMNSFNTDKDTEHLIKK---YSANRIRIRSFNQSRFP 190
+I L + + +P +M S T + T+ K + + + F Q P
Sbjct: 141 ERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEFFTKHKYFGLKKENVIFFQQGMLP 200
Query: 191 RVYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDNLGA 250
+ D + + + + P G+G L+ +L ++ + +G + V DN+
Sbjct: 201 AMSFDGKIILEEKNKVSM---APDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILV 257
Query: 251 TV-DLKILNHMIETGAEYIMELTDKTRADVKGGTLISYDGQVRLLEVAQVPKEHIDEFKN 309
V D + + I+ GA+ ++ +KT G + DG +++E +++ + +
Sbjct: 258 KVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGVYQVVEYSEISLATAQKRSS 317
Query: 310 IRK--FTNFNTNNLWINLKAVKRLIE 333
+ F N N + + ++ ++
Sbjct: 318 DGRLLFNAGNIANHFFTVPFLRDVVN 343
>1VM8-A nrPDB
Length = 534
Score = 326 bits (835), Expect = 2e-89, Method: Composition-based stats.
Identities = 67/327 (20%), Positives = 139/327 (42%), Gaps = 31/327 (9%)
Query: 32 NKLADSSKLDDAARAKFEN--ELDSFFTLFRRYLVEKSSRTTLE-WDKIKSPNPDEVV-- 86
N+L+++ +++ + N EL+SFF R+ + E + E D P P +V+
Sbjct: 35 NELSEAQQMELYMELQAMNFEELNSFF---RKAIGEFDRSSHQEKVDARMEPVPRQVLGS 91
Query: 87 ----KYEIISQQPENVSNL--SKLAVLKLNGGLGTSMGCVGPKSVIEV--REGNTFLDLS 138
+ ++ + + E +S + +K+AVL L GG GT +G PK + +V T +
Sbjct: 92 ATRDQEQLQAWESEGLSQISQNKVAVLLLAGGQGTRLGVSYPKGMYDVGLPSHKTLFQIQ 151
Query: 139 VRQIEYLNRQYD------SDVPLLLMNSFNTDKDTEHLIKK---YSANRIRIRSFNQSRF 189
+I L + + +P +M S T + T+ K + + + F Q
Sbjct: 152 AERILKLQQLAEKHHGNKCTIPWYIMTSGRTMESTKEFFTKHKFFGLKKENVVFFQQGML 211
Query: 190 PRVYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDNLG 249
P + D + + + + P G+G L+ +L ++ + +G + V DN+
Sbjct: 212 PAMSFDGKIILEEKNKVSM---APDGNGGLYRALAAQNIVEDMEQRGICSIHVYCVDNIL 268
Query: 250 ATV-DLKILNHMIETGAEYIMELTDKTRADVKGGTLISYDGQVRLLEVAQVPKEHIDEFK 308
V D + + I+ GA+ ++ +KT G + DG +++E +++
Sbjct: 269 VKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGVYQVVEYSEISLATAQRRS 328
Query: 309 NIRK--FTNFNTNNLWINLKAVKRLIE 333
+ + F N N + + +K ++
Sbjct: 329 SDGRLLFNAGNIANHFFTVPFLKDVVN 355
>4BMA-A nrPDB
Length = 509
Score = 280 bits (716), Expect = 1e-75, Method: Composition-based stats.
Identities = 60/317 (18%), Positives = 125/317 (39%), Gaps = 30/317 (9%)
Query: 37 SSKLDDAARAKFENELDSFFTLFRRYLVEKS--SRTTLEWDKIKSPNPDEVV-------K 87
+L R++ ++L SF + L +K+ + P PD
Sbjct: 51 VDELQTGERSQLFHQLSSFDPVRINELADKALNPPKADDGPASLEPLPDIATASILDSDP 110
Query: 88 YEIISQQPENVSNL--SKLAVLKLNGGLGTSMGCVGPKSVIEV--REGNTFLDLSVRQIE 143
++ E + + +K+AV+ + GG GT +G PK ++ + + +I
Sbjct: 111 KDLEQWYEEGLKLVAGNKVAVVLMAGGQGTRLGSSAPKGCFDIGLPSHKSLFQIQAERIA 170
Query: 144 YLN------RQYDSDVPLLLMNSFNTDKDTEHLI---KKYSANRIRIRSFNQSRFPRVYK 194
L ++ +P +M S T K TE K + N+ + F Q P +
Sbjct: 171 KLQLLAQRISGKEAVIPWYVMTSGPTRKPTEEFFEQHKYFGLNKSDVIIFEQGVLPCISN 230
Query: 195 DSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDN-LGATVD 253
+ + + +++ A P G+G ++++L SG + + +G E + DN L D
Sbjct: 231 EGKILMESKFKV---AVAPDGNGGIYQALLTSGVREDMRKRGIEHIHTYCVDNCLVKVAD 287
Query: 254 LKILNHMIETGAEYIMELTDKTRADVKGGTLISYDGQVRLLEVAQVPKEHID----EFKN 309
+ + ++ K A G ++ +G+ ++E +++ KE + + +
Sbjct: 288 PVFIGFAASKQVDIATKVVRKRNATESVGLILQKNGKPDVVEYSEIDKETAEAKDPKQPD 347
Query: 310 IRKFTNFNTNNLWINLK 326
+ KF N N + + K
Sbjct: 348 VLKFRAANIVNHYYSFK 364
>2YQJ-A nrPDB
Length = 486
Score = 194 bits (493), Expect = 7e-50, Method: Composition-based stats.
Identities = 57/335 (17%), Positives = 128/335 (38%), Gaps = 32/335 (9%)
Query: 26 QMRNALNKLADSSKLDDAARAKFENELDSFFTLFRRYLVEKSSRTTLEWDKIKSPNPDEV 85
Q+ + L + + + E + + + + S + + + PN
Sbjct: 20 QLFQYYDSLTIDQQQEFIDQLSTIEEPAKLISTVEQAI-QFSQTNSTSRNFTQLPNEQTA 78
Query: 86 VKYEIISQQPENVSNLS-------KLAVLKLNGGLGTSMGCVGPKSV--IEVREGNTFLD 136
++ +N + L ++AVL + GG GT +G PK IE+ +
Sbjct: 79 STLDLSKDILQNWTELGLKAIGNGEVAVLLMAGGQGTRLGSSAPKGCFNIELPSQKSLFQ 138
Query: 137 LSVRQI--------EYLNRQYDSDVPLLLMNSFNTDKDTEHLI---KKYSANRIRIRSFN 185
+ +I +YL + +M S T TE + N ++ FN
Sbjct: 139 IQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPTRNATESFFIENNYFGLNSHQVIFFN 198
Query: 186 QSRFPRVY-KDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSN 244
Q P + + + + + P G+G L+++L +G LD L ++G + + +
Sbjct: 199 QGTLPCFNLQGNKILLELKNSICQS---PDGNGGLYKALKDNGILDDLNSKGIKHIHMYC 255
Query: 245 GDN-LGATVDLKILNHMIETGAEYIMELTDKTRADVKGGTLI--SYDGQVRLLEVAQVPK 301
DN L D + I + ++ K A+ G ++ + + ++E +++ +
Sbjct: 256 VDNCLVKVADPIFIGFAIAKKFDLATKVVRKRDANESVGLIVLDQDNQKPCVIEYSEISQ 315
Query: 302 EHIDEF--KNIRK--FTNFNTNNLWINLKAVKRLI 332
E ++ ++ K N N + +++ + ++I
Sbjct: 316 ELANKKDPQDSSKLFLRAANIVNHYYSVEFLNKMI 350
>3OC9-A nrPDB
Length = 405
Score = 141 bits (355), Expect = 8e-34, Method: Composition-based stats.
Identities = 48/259 (18%), Positives = 112/259 (43%), Gaps = 18/259 (6%)
Query: 103 KLAVLKLNGGLGTSMGCVGPKSVIEVREG--NTFLDLSVRQIEYLNR-------QYDSDV 153
K A++ GG G+ +G PK + + + ++ ++ L Q + +
Sbjct: 35 KTALITPAGGQGSRLGFEHPKGMFVLPFEIPKSIFQMTSERLLRLQELASEYSHQKNVMI 94
Query: 154 PLLLMNSFNTDKDTEHLIK---KYSANRIRIRSFNQSRFPRVYKDSLLPVPTEYDSPLDA 210
LM + T ++ + K + + +I F Q P V + + + +
Sbjct: 95 HWFLMTNEETIEEINNYFKEHQYFGLSSEQIHCFPQGMLPVVDFNGKILYEKKDKPYM-- 152
Query: 211 WYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDNLGAT-VDLKILNHMIETGAEYIM 269
P GHG LF++L +G L+ + +G + N DN+ VD ++ +M +E +
Sbjct: 153 -APNGHGGLFKALKDNGILEFMNEKGIKYSVAHNVDNILCKDVDPNMIGYMDLLQSEICI 211
Query: 270 ELTDKTRADVKGGTLISYDGQVRLLEVAQVPKEHIDEFKNIRKFTNFNTNNLWINLKAVK 329
++ K + K G L+ +++++E ++ E +++ + +F +N ++ IN +
Sbjct: 212 KIVKKGFKEEKVGVLVKEQERIKVVEYTELTDE-LNKQLSNGEF-IYNCGHISINGYSTS 269
Query: 330 RLIESSNLEMEIIPNQKTI 348
L +++ ++ +K +
Sbjct: 270 FLEKAAEYQLPYHIAKKKV 288
>4BQH-A nrPDB
Length = 549
Score = 135 bits (340), Expect = 4e-32, Method: Composition-based stats.
Identities = 71/349 (20%), Positives = 123/349 (35%), Gaps = 60/349 (17%)
Query: 19 TNSVAASQMR---NALNKLADSSKLDDAARAKFENELDSFFTLFRRYLVEKSSRTTLEWD 75
TN +A R + L + + SK A DSFF + R
Sbjct: 43 TNELAGVDFRHFNDVLRESLEISKNCSTASLAEPPAKDSFFD-----ISSVDRRR----G 93
Query: 76 KIKSPNPDEVVKYEIISQQPENVSNLSKLAVLKLNGGLGTSMGCVGPKSVI---EVREGN 132
+ K E V Y+ I ++A L L GG GT +G PK +++
Sbjct: 94 QAKRIKNLEAVGYKAI--------QKGQIAFLILAGGSGTRLGFDKPKGFFTCDGLQQRK 145
Query: 133 TFLDLSVRQIEYLN--------RQYDSDVPLLLMNSFNTDKDTEHLIK---KYSANRIRI 181
+ + +I + V LL+M S D +T+ + + R ++
Sbjct: 146 SLFMMHCEKIRRRQEIAESISGSGRKARVQLLVMTSGQNDAETQRFFEENSYFGLEREQV 205
Query: 182 RSFNQSRFPRVYKD-SLLPVPTEYDSPLDAWYPPGHGDLFESLHV--------------S 226
F QS P ++ + + P G+G +F +L
Sbjct: 206 HFFAQSSVPCYDENTGRIIMENRGRICA---APGGNGAVFAALAAPRATKDKDGTLQVKE 262
Query: 227 GELDALIAQGREILFVSNGDNLGATV-DLKILNHMIETGAEYIMELTDKTRADVKGGTLI 285
L L G + + N DNL A V D + + IE A +++ K D + G +
Sbjct: 263 SLLQHLRKLGIAYVQIGNIDNLLANVADPVFIGYAIEEEAHVVVKTCPKRGPDERVGVFV 322
Query: 286 SYDGQVRLLEVAQVPK--EHIDEFKNIRKFTNFNTNN-----LWINLKA 327
G+ ++E ++ + ID+ KF N ++ +++L A
Sbjct: 323 RASGKWGVVEYTEIGDRAKEIDDATGELKFNCANISSNLCSLHFMSLAA 371
>3OH0-A nrPDB
Length = 641
Score = 69.0 bits (167), Expect = 5e-12, Method: Composition-based stats.
Identities = 66/342 (19%), Positives = 112/342 (32%), Gaps = 45/342 (13%)
Query: 89 EIISQQPENVSNLSKLAVLKLNGGLGTSMGCVGPKSVIEVREGNTFLDLSVRQIEYLNRQ 148
E + + + L K + + GGLG +G K + V T + + R
Sbjct: 100 ERTALENAGTAMLCKTVFVLVAGGLGERLGYSSIKVSLPVETA-TNTTYLAYYLRWAQRV 158
Query: 149 YDSDVPLLLMNSFNTDKDTEHLIKKYSANRIRIRSFNQSRFPRVYKDSLLPVPTEYDSPL 208
+VP ++M S +T T L+++ + Q + DS + + ++
Sbjct: 159 GGKEVPFVIMTSDDTHDRTLQLLRELQLEVPNLHVLKQGQVFCF-ADSAAHLALD-ETGK 216
Query: 209 DAWYPPGHGDLFESLHV------------------SGELDALIAQGREILFVSNGDNLGA 250
P GHGD+ ++ ++ +A G E + N GA
Sbjct: 217 LLRKPHGHGDVHSLIYNATVKRDVVPDSGDGTATAQPLVNDWLAAGYESIVFIQDTNAGA 276
Query: 251 TVDLKI-LNHMIETGAEYIMELTDKTRADVKGGTLISY---DGQVRLLEVAQ-------- 298
T+ + I L E + + G L G L+ +
Sbjct: 277 TITIPISLALSAEHSLDMNFTCIPRV-PKEPIGLLCRTKKNSGDPWLVANVEYNVFAEVS 335
Query: 299 --VPKEHIDEFKNIRKFTNF--NTNNLWINLKA-VKRLIESSNLEMEIIPNQKTITRDGH 353
+ K+ DE + F+ F + N L L + V RL ES + E I N K
Sbjct: 336 RALNKDGGDEVSDPTGFSPFPGSVNTLVFKLSSYVDRLRESHGIVPEFI-NPKYSDETRR 394
Query: 354 EINV-LQLETACGAAIRHFD----GAHGVVVPRSRFLPVKTC 390
++E+ F G V R + PVK
Sbjct: 395 SFKKPARIESLMQDIALLFSEDDYRVGGTVFERFSYQPVKNS 436
>4PJ1-A nrPDB
Length = 558
Score = 34.7 bits (78), Expect = 0.093, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 12/123 (9%)
Query: 77 IKSPNPDEVVKYEIISQQPENVSNLSKLAVLKLNGG------LGTSMGCVGPKSVIEVRE 130
+ + + + S+ ++++A + NG + +M VG K VI V++
Sbjct: 146 VMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDKEIGNIISDAMKKVGRKGVITVKD 205
Query: 131 GNTFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTDKDTE-HLIKKYSANRIRIRSFNQSRF 189
G T D + IE + P + NT K + Y + S QS
Sbjct: 206 GKTLND-ELEIIEGMKFDRGYISPYFI----NTSKGQKCEFQDAYVLLSEKKISSIQSIV 260
Query: 190 PRV 192
P +
Sbjct: 261 PAL 263
>1JNE-A nrPDB
Length = 420
Score = 34.7 bits (78), Expect = 0.093, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 44/122 (36%), Gaps = 10/122 (8%)
Query: 193 YKDSLLPV--PTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDNLGA 250
D L P P E D ++P G D L+ +++ ++QG F SN NLG
Sbjct: 221 TFDFLTPARNPEEADYSAPIYHPDGSKDRLAHLNADFQVEYWLSQG----FPSNKINLGV 276
Query: 251 TVDLKILNHMIETGAEYIMELTDKTRADVKGGTLISYDGQVRLLEVAQVPKEHIDEFKNI 310
++G E + + +T G G LL A++ + +
Sbjct: 277 ATYGNAWKLTKDSGLE-GVPVVPETSGPAPEGFQSQKPG---LLSYAEICGKLSNPQNQF 332
Query: 311 RK 312
K
Sbjct: 333 LK 334
>4MYB-A nrPDB
Length = 261
Score = 32.8 bits (73), Expect = 0.35, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 101 LSKLAVLKLNGGLGTSMGCVGPKSVIEVREGNTFLD 136
+S V+ G+GT M PK ++ G T LD
Sbjct: 1 VSNKYVIIPAAGIGTRMQLDIPKQYYKLNNGKTILD 36
>1Y7H-A nrPDB
Length = 268
Score = 32.4 bits (72), Expect = 0.54, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 39/108 (36%), Gaps = 19/108 (17%)
Query: 123 KSVIEVREGN-TFLDLSV-----RQIEYLNRQYDSDVPLL-LMNSFNTDKDT----EHL- 170
K ++E T LDL+ R+IE L YD +PL+ LM S + D+ L
Sbjct: 24 KPLLEAAGHKVTALDLAASGTDLRKIEELRTLYDYTLPLMELMESLSADEKVILVGHSLG 83
Query: 171 -------IKKYSANRIRIRSFNQSRFPRVYKDSLLPVPTEYDSPLDAW 211
++KY V+ S + +P + W
Sbjct: 84 GMNLGLAMEKYPQKIYAAVFLAAFMPDSVHNSSFVLEQYNERTPAENW 131
>4CVH-A nrPDB
Length = 411
Score = 32.0 bits (71), Expect = 0.65, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 102 SKLAVLKLNGGLGTSMGCVGPKSVIEVREGNTFLDLSVRQIEYLNRQYDSDVPLLLMNSF 161
+A + GG G MG PK + E L ++ L R +++ +
Sbjct: 5 QAVAAVLPAGGCGERMGVPTPKQFCPILER----PLISYTLQALERVCWIK-DIVVAVTG 59
Query: 162 NTDKDTEHLIKKYSANRIRIRS 183
+ + +I+KY RI +
Sbjct: 60 ENMEVMKSIIQKYQHKRISLVE 81
>5H7J-A nrPDB
Length = 743
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 4/95 (4%)
Query: 56 FTLFRRYLVEKSSRTTLEWDKIKSPNPDEVVKYEIISQQPENVSNLSKLAVLKLNGGLGT 115
T + KS + + P PDE+ PE K KL
Sbjct: 472 ITKSSPMVEGKSPNRHNRFYIVVEPMPDEIYNAIKEGIIPEGRVKNPKEVAKKLA---EL 528
Query: 116 SMGCVGPKSVIEVREGNTFLDLSVRQIEYLNRQYD 150
M + ++++ GN F+D + + ++YLN D
Sbjct: 529 GMDYEIARGIVDIYNGNMFIDNT-KGVQYLNEVMD 562
>3PMO-A nrPDB
Length = 372
Score = 30.5 bits (67), Expect = 1.9, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 453 GNVFLGKDVTLRGTVIIVCSDGHKIDIPNGSILENVV-VTGNLQILEH 499
G V +G DV + I I NG L+N + + N+QI +H
Sbjct: 221 GGVTIGDDVEIGANTTIDRGALSDTLIGNGVKLDNQIMIAHNVQIGDH 268
>5X7Y-A nrPDB
Length = 177
Score = 29.7 bits (65), Expect = 2.7, Method: Composition-based stats.
Identities = 21/131 (16%), Positives = 44/131 (33%), Gaps = 14/131 (10%)
Query: 217 GDLFESLHVSGELDALIAQGREILFVSNGDNLGATVDLKILNHMIETGAEYIMELTDKTR 276
GD + L S + + G +FV + + L + ++ M +++
Sbjct: 21 GDWYSILLASDIKEKIEENGSMRVFVKDIEVLS---NSSLIFTMHTKVNGKCTKISLICN 77
Query: 277 ADVKGGTLISYDGQVRLLEVAQVPKEHIDEFKNIRKFTNFNTNNLWINLKAVKRLIESSN 336
K G L + + E + F+ NN +N + +L+E
Sbjct: 78 KTEKDGEYDVVHDGYNLFRIIETAYED---------YIIFHLNN--VNQEQEFQLMELYG 126
Query: 337 LEMEIIPNQKT 347
+ ++ P K
Sbjct: 127 RKPDVSPKVKE 137
>1BYG-A nrPDB
Length = 278
Score = 28.9 bits (63), Expect = 5.3, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 166 DTEHLIKKYSANRIRIRSFNQSRFPRVYKDSLLP-VPTEYDSPLDAWYPPGHGDLFESLH 224
T+ + + I SF + +PR+ ++P V Y PP ++E +
Sbjct: 192 STKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPA---VYEVMK 248
Query: 225 VSGELDA 231
LDA
Sbjct: 249 NCWHLDA 255
>1SVT-O nrPDB
Length = 97
Score = 28.1 bits (61), Expect = 9.4, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 460 DVTLRGTVIIVCSDGHKIDIPNGSILENVVV 490
+ L G+ + G + + NG ILEN V
Sbjct: 24 GIVLTGSAAAKSTRGEVLAVGNGRILENGEV 54
>3PS9-A nrPDB
Length = 676
Score = 28.1 bits (61), Expect = 9.9, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 212 YPPGHGDLFESLHVSGELDALIAQGREILFVSNGDNLGATVDLKILNHMIETGA 265
YP G G L + L+ QG +I + N D +LN + A
Sbjct: 408 YPQG-GWLCPAELTRNVLELAQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQQA 460
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.309 0.130 0.328
Lambda K H
0.267 0.0399 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,381,832
Number of Sequences: 36641
Number of extensions: 667851
Number of successful extensions: 2072
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1949
Number of HSP's gapped (non-prelim): 47
length of query: 499
length of database: 10,336,785
effective HSP length: 101
effective length of query: 398
effective length of database: 6,636,044
effective search space: 2641145512
effective search space used: 2641145512
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 61 (28.1 bits)