BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= P32524
(280 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
5ZWO-w nrPDB 575 e-165
4DGW-B nrPDB 317 5e-87
6AHD-u nrPDB 63 2e-10
2DT7-B nrPDB 42 3e-04
2DT6-A nrPDB 32 0.22
5GSL-A nrPDB 28 3.1
4E2O-A nrPDB 27 7.3
>5ZWO-w nrPDB
Length = 280
Score = 575 bits (1483), Expect = e-165, Method: Compositional matrix adjust.
Identities = 280/280 (100%), Positives = 280/280 (100%)
Query: 1 MEPEDTQLKEDIKTTVNYIKQHGVEFENKLLEDERFSFIKKDDPLHEYYTKLMNEPTDTV 60
MEPEDTQLKEDIKTTVNYIKQHGVEFENKLLEDERFSFIKKDDPLHEYYTKLMNEPTDTV
Sbjct: 1 MEPEDTQLKEDIKTTVNYIKQHGVEFENKLLEDERFSFIKKDDPLHEYYTKLMNEPTDTV 60
Query: 61 SGEDNDRKSEREIARPPDFLFSQYDTGISRRDMEVIKLTARYYAKDKSIVEQMISKDGEA 120
SGEDNDRKSEREIARPPDFLFSQYDTGISRRDMEVIKLTARYYAKDKSIVEQMISKDGEA
Sbjct: 61 SGEDNDRKSEREIARPPDFLFSQYDTGISRRDMEVIKLTARYYAKDKSIVEQMISKDGEA 120
Query: 121 RLNFMNSSHPLHKTFTDFVAQYKRVYSFTGQEIKKSKRTILDNCFERTQYWEFEKDKDRE 180
RLNFMNSSHPLHKTFTDFVAQYKRVYSFTGQEIKKSKRTILDNCFERTQYWEFEKDKDRE
Sbjct: 121 RLNFMNSSHPLHKTFTDFVAQYKRVYSFTGQEIKKSKRTILDNCFERTQYWEFEKDKDRE 180
Query: 181 HDKLVELCKIQFAAIPWDKFTQVAKFSIPEDTEIFEGSLDLEQMRLRRVQTGIKLFDSIK 240
HDKLVELCKIQFAAIPWDKFTQVAKFSIPEDTEIFEGSLDLEQMRLRRVQTGIKLFDSIK
Sbjct: 181 HDKLVELCKIQFAAIPWDKFTQVAKFSIPEDTEIFEGSLDLEQMRLRRVQTGIKLFDSIK 240
Query: 241 PTNEEEKIVSDQGKQKGGDSKGKKRKIRAVGETRLKKSKK 280
PTNEEEKIVSDQGKQKGGDSKGKKRKIRAVGETRLKKSKK
Sbjct: 241 PTNEEEKIVSDQGKQKGGDSKGKKRKIRAVGETRLKKSKK 280
>4DGW-B nrPDB
Length = 152
Score = 317 bits (811), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 151/151 (100%), Positives = 151/151 (100%)
Query: 87 GISRRDMEVIKLTARYYAKDKSIVEQMISKDGEARLNFMNSSHPLHKTFTDFVAQYKRVY 146
GISRRDMEVIKLTARYYAKDKSIVEQMISKDGEARLNFMNSSHPLHKTFTDFVAQYKRVY
Sbjct: 2 GISRRDMEVIKLTARYYAKDKSIVEQMISKDGEARLNFMNSSHPLHKTFTDFVAQYKRVY 61
Query: 147 SFTGQEIKKSKRTILDNCFERTQYWEFEKDKDREHDKLVELCKIQFAAIPWDKFTQVAKF 206
SFTGQEIKKSKRTILDNCFERTQYWEFEKDKDREHDKLVELCKIQFAAIPWDKFTQVAKF
Sbjct: 62 SFTGQEIKKSKRTILDNCFERTQYWEFEKDKDREHDKLVELCKIQFAAIPWDKFTQVAKF 121
Query: 207 SIPEDTEIFEGSLDLEQMRLRRVQTGIKLFD 237
SIPEDTEIFEGSLDLEQMRLRRVQTGIKLFD
Sbjct: 122 SIPEDTEIFEGSLDLEQMRLRRVQTGIKLFD 152
>6AHD-u nrPDB
Length = 793
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 111/235 (47%), Gaps = 38/235 (16%)
Query: 7 QLKEDIKTTVNYIKQHGVEFENKLLEDE----RFSFIKKDDPLHEYYTKLMNE------- 55
+++ + T +++ ++G EFE ++ ++E +F+F+ +DP H YY ++E
Sbjct: 48 EVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEGKAQ 107
Query: 56 -PTDTVS----------GEDNDRKSEREIAR--------PPDFLFSQYDTGISRRDMEVI 96
P+ + + +K + ++ + PP+F F IS D++V+
Sbjct: 108 EPSAAIPKVMQQQQQTTQQQLPQKVQAQVIQETIVPKEPPPEFEFIADPPSISAFDLDVV 167
Query: 97 KLTARYYAKD-KSIVEQMISKDGEA-RLNFMNSSHPLHKTFTDFVAQYKRVYSFTGQEIK 154
KLTA++ A++ + + Q++ K+ + +F+ H L FT V QY ++
Sbjct: 168 KLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLFS 227
Query: 155 KSK------RTILDNCFERTQYWEFEKDKDREHDKLVELCKIQFAAIPWDKFTQV 203
K K R +LD R ++ +F++ + ++ ++ E ++ +A I W F V
Sbjct: 228 KLKKEAENPREVLDQVCYRVEWAKFQERERKKEEEEKEKERVAYAQIDWHDFVVV 282
>2DT7-B nrPDB
Length = 85
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 76 PPDFLFSQYDTGISRRDMEVIKLTARYYAKD-KSIVEQMISKDG-EARLNFMNSSHPLHK 133
PP+F F IS D++V+KLTA++ A++ + + Q++ K+ + +F+ H L
Sbjct: 15 PPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFN 74
Query: 134 TFTDFVAQYKR 144
FT V QY +
Sbjct: 75 YFTKLVEQYTK 85
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 12 IKTTVNYIKQHGVEFENKLLEDER----FSFIKKDDPLHEYYTKLMNEPT 57
+K T ++ ++G +F +L++ E+ F F++ L Y+TKL+ + T
Sbjct: 35 VKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYT 84
>2DT6-A nrPDB
Length = 64
Score = 32.3 bits (72), Expect = 0.22, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 7 QLKEDIKTTVNYIKQHGVEFENKLLEDE----RFSFIKKDDPLHEYYTKLMNE 55
+++ + T +++ ++G EFE ++ ++E +F+F+ +DP H YY ++E
Sbjct: 2 EVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSE 54
>5GSL-A nrPDB
Length = 778
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 59/164 (35%), Gaps = 33/164 (20%)
Query: 56 PTDTVSGEDNDRKSEREIARPPDFLFSQYDTGISRRDMEVIKLTARYYAKDKSIVEQMIS 115
P +V E DR R +AR EV A + DK + +
Sbjct: 574 PYLSVDAEGIDRMVVRNVAR------------------EVKGGEAIAWIGDKVVGTIVRK 615
Query: 116 KDGEA-----RLNFMNSSHPLHKTFTDFVAQYKRVYSFTGQEIKKSKRTILDNCFERTQY 170
G A RL + +S H +H+ F D + Q + V +E++ S R I+ R Y
Sbjct: 616 GKGSAVILGFRLQYYSSYHDMHRKFVDKILQLQGV----KREVEVSNRDII--AIPRIHY 669
Query: 171 WEFEKDKDREHDKLVELCKIQFAAIPWDKFTQVAKFSIPEDTEI 214
+D E V+ ++F K IP D EI
Sbjct: 670 LVLVNPRDEEVAGKVKYRGVEFEI----KMKGRGVLFIPVDVEI 709
>4E2O-A nrPDB
Length = 454
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 236 FDSIKPTNEEEKIVSDQGKQKGGDSKGKKRKIRAVGE 272
F+++ PTN++ V+D GGD KG K+ + E
Sbjct: 20 FNNMDPTNDQNVNVNDPKGYFGGDLKGVTAKLDYIKE 56
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
5ZWO-w nrPDB 442 e-125
6AHD-u nrPDB 252 1e-67
4DGW-B nrPDB 250 6e-67
2DT7-B nrPDB 109 1e-24
Sequences not found previously or not previously below threshold:
2DT6-A nrPDB 80 1e-15
1X4O-A nrPDB 41 6e-04
2E5Z-A nrPDB 39 0.002
2E60-A nrPDB 39 0.003
1UG0-A nrPDB 37 0.009
5YSW-A nrPDB 32 0.22
6CGM-A nrPDB 32 0.28
3PS9-A nrPDB 30 1.7
5XOM-A nrPDB 29 3.3
1IV8-A nrPDB 29 3.5
1T33-A nrPDB 28 4.1
4CH7-A nrPDB 28 4.4
4WTQ-A nrPDB 27 6.5
4DVY-P nrPDB 27 7.6
4B9C-A nrPDB 27 8.9
4N8U-A nrPDB 27 9.6
>5ZWO-w nrPDB
Length = 280
Score = 442 bits (1138), Expect = e-125, Method: Composition-based stats.
Identities = 280/280 (100%), Positives = 280/280 (100%)
Query: 1 MEPEDTQLKEDIKTTVNYIKQHGVEFENKLLEDERFSFIKKDDPLHEYYTKLMNEPTDTV 60
MEPEDTQLKEDIKTTVNYIKQHGVEFENKLLEDERFSFIKKDDPLHEYYTKLMNEPTDTV
Sbjct: 1 MEPEDTQLKEDIKTTVNYIKQHGVEFENKLLEDERFSFIKKDDPLHEYYTKLMNEPTDTV 60
Query: 61 SGEDNDRKSEREIARPPDFLFSQYDTGISRRDMEVIKLTARYYAKDKSIVEQMISKDGEA 120
SGEDNDRKSEREIARPPDFLFSQYDTGISRRDMEVIKLTARYYAKDKSIVEQMISKDGEA
Sbjct: 61 SGEDNDRKSEREIARPPDFLFSQYDTGISRRDMEVIKLTARYYAKDKSIVEQMISKDGEA 120
Query: 121 RLNFMNSSHPLHKTFTDFVAQYKRVYSFTGQEIKKSKRTILDNCFERTQYWEFEKDKDRE 180
RLNFMNSSHPLHKTFTDFVAQYKRVYSFTGQEIKKSKRTILDNCFERTQYWEFEKDKDRE
Sbjct: 121 RLNFMNSSHPLHKTFTDFVAQYKRVYSFTGQEIKKSKRTILDNCFERTQYWEFEKDKDRE 180
Query: 181 HDKLVELCKIQFAAIPWDKFTQVAKFSIPEDTEIFEGSLDLEQMRLRRVQTGIKLFDSIK 240
HDKLVELCKIQFAAIPWDKFTQVAKFSIPEDTEIFEGSLDLEQMRLRRVQTGIKLFDSIK
Sbjct: 181 HDKLVELCKIQFAAIPWDKFTQVAKFSIPEDTEIFEGSLDLEQMRLRRVQTGIKLFDSIK 240
Query: 241 PTNEEEKIVSDQGKQKGGDSKGKKRKIRAVGETRLKKSKK 280
PTNEEEKIVSDQGKQKGGDSKGKKRKIRAVGETRLKKSKK
Sbjct: 241 PTNEEEKIVSDQGKQKGGDSKGKKRKIRAVGETRLKKSKK 280
>6AHD-u nrPDB
Length = 793
Score = 252 bits (644), Expect = 1e-67, Method: Composition-based stats.
Identities = 52/235 (22%), Positives = 111/235 (47%), Gaps = 38/235 (16%)
Query: 7 QLKEDIKTTVNYIKQHGVEFENKLLEDE----RFSFIKKDDPLHEYYTKLMNE------- 55
+++ + T +++ ++G EFE ++ ++E +F+F+ +DP H YY ++E
Sbjct: 48 EVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEGKAQ 107
Query: 56 -PTDTVSG----------EDNDRKSEREIAR--------PPDFLFSQYDTGISRRDMEVI 96
P+ + + +K + ++ + PP+F F IS D++V+
Sbjct: 108 EPSAAIPKVMQQQQQTTQQQLPQKVQAQVIQETIVPKEPPPEFEFIADPPSISAFDLDVV 167
Query: 97 KLTARYYAKD-KSIVEQMISKDG-EARLNFMNSSHPLHKTFTDFVAQYKRVYSFTGQEIK 154
KLTA++ A++ + + Q++ K+ + +F+ H L FT V QY ++
Sbjct: 168 KLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLFS 227
Query: 155 KSK------RTILDNCFERTQYWEFEKDKDREHDKLVELCKIQFAAIPWDKFTQV 203
K K R +LD R ++ +F++ + ++ ++ E ++ +A I W F V
Sbjct: 228 KLKKEAENPREVLDQVCYRVEWAKFQERERKKEEEEKEKERVAYAQIDWHDFVVV 282
>4DGW-B nrPDB
Length = 152
Score = 250 bits (637), Expect = 6e-67, Method: Composition-based stats.
Identities = 151/151 (100%), Positives = 151/151 (100%)
Query: 87 GISRRDMEVIKLTARYYAKDKSIVEQMISKDGEARLNFMNSSHPLHKTFTDFVAQYKRVY 146
GISRRDMEVIKLTARYYAKDKSIVEQMISKDGEARLNFMNSSHPLHKTFTDFVAQYKRVY
Sbjct: 2 GISRRDMEVIKLTARYYAKDKSIVEQMISKDGEARLNFMNSSHPLHKTFTDFVAQYKRVY 61
Query: 147 SFTGQEIKKSKRTILDNCFERTQYWEFEKDKDREHDKLVELCKIQFAAIPWDKFTQVAKF 206
SFTGQEIKKSKRTILDNCFERTQYWEFEKDKDREHDKLVELCKIQFAAIPWDKFTQVAKF
Sbjct: 62 SFTGQEIKKSKRTILDNCFERTQYWEFEKDKDREHDKLVELCKIQFAAIPWDKFTQVAKF 121
Query: 207 SIPEDTEIFEGSLDLEQMRLRRVQTGIKLFD 237
SIPEDTEIFEGSLDLEQMRLRRVQTGIKLFD
Sbjct: 122 SIPEDTEIFEGSLDLEQMRLRRVQTGIKLFD 152
>2DT7-B nrPDB
Length = 85
Score = 109 bits (272), Expect = 1e-24, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 76 PPDFLFSQYDTGISRRDMEVIKLTARYYAKD-KSIVEQMISKDG-EARLNFMNSSHPLHK 133
PP+F F IS D++V+KLTA++ A++ + + Q++ K+ + +F+ H L
Sbjct: 15 PPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFN 74
Query: 134 TFTDFVAQYKR 144
FT V QY +
Sbjct: 75 YFTKLVEQYTK 85
Score = 36.6 bits (83), Expect = 0.013, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 10 EDIKTTVNYIKQHGVEFENKLLEDE----RFSFIKKDDPLHEYYTKLMNEPT 57
+ +K T ++ ++G +F +L++ E +F F++ L Y+TKL+ + T
Sbjct: 33 DVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYT 84
>2DT6-A nrPDB
Length = 64
Score = 79.8 bits (195), Expect = 1e-15, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 7 QLKEDIKTTVNYIKQHGVEFENKLLEDE----RFSFIKKDDPLHEYYTKLMNEPTDTVSG 62
+++ + T +++ ++G EFE ++ ++E +F+F+ +DP H YY ++E + +
Sbjct: 2 EVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEGKAQ 61
Query: 63 E 63
E
Sbjct: 62 E 62
Score = 32.4 bits (72), Expect = 0.25, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 94 EVIKLTARYYAKDKSIVEQMISKDG--EARLNFMNSSHPLHKTFTDFVAQYKR 144
++ TA + A++ E I ++ + NF+N + P H + V+++K
Sbjct: 5 NIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKE 57
>1X4O-A nrPDB
Length = 78
Score = 40.8 bits (94), Expect = 6e-04, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 3 PEDTQLKEDIKTTVNYIKQHGVEFENKLLEDER----FSFI-KKDDPLHEYYTKLMNE 55
PED + K + +I G E E L++ R FSF+ + + YY + ++E
Sbjct: 12 PEDEEAKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYDPNSQGYRYYRQKLDE 69
>2E5Z-A nrPDB
Length = 90
Score = 38.9 bits (89), Expect = 0.002, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 7 QLKEDIKTTVNYIKQHGVEFENKLL--EDERFSFIKKDDPLHEYYTKL 52
++ I Y+ ++G++FE + D+RF F++ + YY
Sbjct: 23 DVQPVIDKLAEYVARNGLKFETSVRAKNDQRFEFLQPWHQYNAYYEFK 70
Score = 27.4 bits (59), Expect = 7.9, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 95 VIKLTARYYAKDKSIVEQMISKDGEARLNFMNSSHPLHKTFTDFVAQY 142
VI A Y A++ E + + R F+ H + + +F Q+
Sbjct: 27 VIDKLAEYVARNGLKFETSVRAKNDQRFEFLQPWHQ-YNAYYEFKKQF 73
>2E60-A nrPDB
Length = 101
Score = 38.5 bits (88), Expect = 0.003, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 3 PEDTQLKEDIKTTVNYIKQHGVEFE----NKLLEDERFSFIKKD---DPLHEYYTKLMNE 55
P ++ I+ T +++ + G +FE K + +F F++ D +P +++ K M E
Sbjct: 22 PPTAKMHAIIERTASFVCRQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYYKFIQKAMKE 81
Query: 56 PTDTVSGED 64
TV E+
Sbjct: 82 GRYTVLAEN 90
Score = 30.1 bits (66), Expect = 1.1, Method: Composition-based stats.
Identities = 9/52 (17%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 95 VIKLTARYYAKDKSIVEQMISKDG--EARLNFMNSSHPLHKTFTDFVAQYKR 144
+I+ TA + + + E M+ ++ +F+ H L+ + F+ + +
Sbjct: 30 IIERTASFVCRQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYY-KFIQKAMK 80
>1UG0-A nrPDB
Length = 88
Score = 37.0 bits (84), Expect = 0.009, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 3 PEDTQLKEDIKTTVNYIKQHGVEFENKLLEDER----FSFI-KKDDPLHEYYTKLMNE 55
PE + + I+ ++ + G E E +ED + F+F+ K+ YY + + E
Sbjct: 22 PEGAETRRVIEKLARFVAEGGPELEKVAMEDYKDNPAFTFLHDKNSREFLYYRRKVAE 79
>5YSW-A nrPDB
Length = 441
Score = 32.4 bits (72), Expect = 0.22, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 18 YIKQHGVEFENKLLEDERF--SFIKKDDPLHEYYTKLMN 54
+ K+ EF +L +D+ SFI D P H Y KL+
Sbjct: 105 WFKELSPEFRERLRDDKARAGSFINMDPPEHTRYRKLLT 143
>6CGM-A nrPDB
Length = 700
Score = 32.0 bits (71), Expect = 0.28, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 11/84 (13%)
Query: 111 EQMISKDGEARLNFMNSSHPLHKTFTDFVAQYKRVYSFTGQEIKKSKRTILDNCFERTQY 170
E MI KDG+ + + +H F D++ Q + + LD E QY
Sbjct: 15 EIMIQKDGKFQFD--KDKEAVHSYFVDYINQNT--------VFFHNLKEKLDYLVEN-QY 63
Query: 171 WEFEKDKDREHDKLVELCKIQFAA 194
+E E + + E+ K +A
Sbjct: 64 YEEEFLSLYSFEDIKEVFKTAYAK 87
>3PS9-A nrPDB
Length = 676
Score = 29.7 bits (65), Expect = 1.7, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 62 GEDNDRKSEREIARPPDFLFSQYDTGISRRDMEVIKLTARYYAKDKSIVEQMISKDGEAR 121
G D+D K + +P + F+ T +SR D + + Y++ D + E G +
Sbjct: 2 GTDDDDKMKHYSIQPANLEFNAEGTPVSR-DFDDV-----YFSNDNGLEETRYVFLGGNQ 55
Query: 122 LNFMNSSHP 130
L HP
Sbjct: 56 LEVRFPEHP 64
>5XOM-A nrPDB
Length = 393
Score = 28.5 bits (62), Expect = 3.3, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Query: 154 KKSKRTILDNCFERTQYWEFEKD---KDREHDKLVELCKIQFAAIPWDKFTQVAKFSIPE 210
++S I+D+ + Q E D K ++ E I + W V ++
Sbjct: 8 QRSPVEIIDDVKDEIQKRELIYDALHKLNSPNEEKEYFNIHAWDV-WHDMISVRALTVDS 66
Query: 211 DTEIFEGSLDLEQMRLRRVQTGIK 234
D EI++ + ++ + TG K
Sbjct: 67 DVEIYKVLKAMSSAKITQATTGYK 90
>1IV8-A nrPDB
Length = 720
Score = 28.5 bits (62), Expect = 3.5, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
Query: 84 YDTGISRRDM-EVIKLTARYYAKDKSIVEQM-ISKDGEARLNFMNSSHPLHKTFTDFV-- 139
YD D+ +IK K E++ ++ DG +F+N S+ L + +
Sbjct: 234 YDPEKYINDLRSIIKNKIIIVEKILGFQEELKLNSDGTTGYDFLNYSNLLFNFNQEIMDS 293
Query: 140 --AQYKRVYSFTGQEIKKSKRTILDNCF 165
+ + IKK K I+D F
Sbjct: 294 IYENFTAEKISISESIKKIKAQIIDELF 321
>1T33-A nrPDB
Length = 224
Score = 28.1 bits (61), Expect = 4.1, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 18/125 (14%)
Query: 67 RKSEREIARP-PDFLFSQYDTGISRRDMEVIKLTARYYAKDKSIVEQMISKDGEARLNFM 125
K+ER ++P PD + ++ ++M ++ K I + +S +L
Sbjct: 79 EKAERLFSQPAPDRDAIRELILLACKNMIMLLTQEDTVNLSKFISREQLSPTSAYQLVHE 138
Query: 126 NSSHPLHKTFTDFVAQY-------KRVYSFTGQE------IKKSKRTILDNCFERTQYWE 172
PLH T VA Y R+ T + K TIL RT + +
Sbjct: 139 QVIDPLHTHLTRLVAAYTGCDANDTRMILHTHALLGEVLAFRLGKETIL----LRTGWPQ 194
Query: 173 FEKDK 177
F+++K
Sbjct: 195 FDEEK 199
>4CH7-A nrPDB
Length = 342
Score = 28.1 bits (61), Expect = 4.4, Method: Composition-based stats.
Identities = 21/112 (18%), Positives = 41/112 (36%), Gaps = 17/112 (15%)
Query: 82 SQYDTGISRRDMEVIKLTA-RYYAKDKSIVEQMISKDGEARLNFMNSSH-----PLHKTF 135
IS + +V++L A R KD ++ + +L++ + + T+
Sbjct: 107 LAVPPEISELE-DVVRLMAERERVKDYLVLRVVRLFKIGVKLDYESPAEKESVDTKVYTY 165
Query: 136 TDFVAQYKRVYSFTGQEIKKSKRTILDNCFERTQYWEFEKDKDREHDKLVEL 187
T + KR+ S T +R L E+ K ++L+E
Sbjct: 166 TPLTEEEKRIVSITQGSFPLVERPFL----------EYAKRLRMSEEELLEK 207
>4WTQ-A nrPDB
Length = 293
Score = 27.4 bits (59), Expect = 6.5, Method: Composition-based stats.
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 20 KQHGVEFENKLLEDERFSFIKKDDPLHEYYTK---LMNEPTDTVSGEDND-RKSEREIAR 75
G FE + + F I + H ++ + T ++G D+ + + +I
Sbjct: 170 AHSGPNFEATVGDRVEFVMITHGEYYHTFHMHGHRWADNRTGMLTGPDDPSQVVDNKIVG 229
Query: 76 PPD 78
P D
Sbjct: 230 PAD 232
>4DVY-P nrPDB
Length = 876
Score = 27.4 bits (59), Expect = 7.6, Method: Composition-based stats.
Identities = 35/216 (16%), Positives = 79/216 (36%), Gaps = 20/216 (9%)
Query: 57 TDTVSGEDNDRKSEREIARPPD-------FLFSQYDTGISRRDMEVIKLTARYYAKDKSI 109
+T+ +++ + A P F + D ++ D + + + ++
Sbjct: 3 NETIDQTRTPDQTQSQTAFDPQQFINNLQVAFIKVDNVVASFDPDQKPIVDKNDRDNRQA 62
Query: 110 VEQMISKDGEARLNFMNSSHPLHKTFTDFVAQYKRVYSFTG----QEIKKSKRTILDNCF 165
+ + E + + ++ F+DF+ + + + + KS + D +
Sbjct: 63 FDGISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLIDVESSTKSFQKFGDQRY 122
Query: 166 E-RTQYWEFEKDKDREHDKLVELCKIQFAAIPWDKFTQVAKFSIPEDTEIFEGSLDLEQM 224
+ T + +KD + + + + P + A+F + + F G + Q+
Sbjct: 123 QIFTSWVSMQKDPSKINTRSIRNFMENIIQPPIPDDKEKAEF-LKSAKQSFAGIIIGNQI 181
Query: 225 RLRRVQTGIKLFD-SIKPTNEEEKIVSDQGKQKGGD 259
R + G+ FD S+K E EK G GGD
Sbjct: 182 RTDQKFMGV--FDESLKERQEAEK----NGGPTGGD 211
>4B9C-A nrPDB
Length = 150
Score = 27.0 bits (58), Expect = 8.9, Method: Composition-based stats.
Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 21/111 (18%)
Query: 78 DFLFSQYDTGISRRDMEVIKLTARYYAKDKSIVEQM----------ISKDGEARLNFMNS 127
DF F ++TG D++ +K+ RYY K+ +++M KD + R +
Sbjct: 22 DFSFRMFNTGNEAIDLKDVKV--RYYFKEDVSIDEMNWAVYFYSLGSEKDVQCRFYELPG 79
Query: 128 SHPLHKTFTDFVAQYKRVYSFTGQEIKKSKRTILDNCFERTQYWEFEKDKD 178
+K +F + + + F + + +FE+ D
Sbjct: 80 KKEANKYLE---------ITFKSGTLSPNDVMYITGEFYKNDWTKFEQRDD 121
>4N8U-A nrPDB
Length = 281
Score = 27.0 bits (58), Expect = 9.6, Method: Composition-based stats.
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 20 KQHGVEFENKLLEDERFSFIKKDDPLHEYYTK---LMNEPTDTVSGEDNDRKS-EREIAR 75
G FE + + F I + H ++ + T ++G D+ + + +I
Sbjct: 170 AHSGPNFEATVGDRVEFVMITHGEYYHTFHMHGHRWADNRTGLLTGPDDPSQVIDNKIVG 229
Query: 76 PPD 78
P D
Sbjct: 230 PAD 232
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.307 0.131 0.346
Lambda K H
0.267 0.0408 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,803,007
Number of Sequences: 36641
Number of extensions: 440259
Number of successful extensions: 1300
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1243
Number of HSP's gapped (non-prelim): 60
length of query: 280
length of database: 10,336,785
effective HSP length: 96
effective length of query: 184
effective length of database: 6,819,249
effective search space: 1254741816
effective search space used: 1254741816
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.5 bits)
S2: 58 (27.0 bits)