BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= P32524
         (280 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

5ZWO-w nrPDB                                                          575   e-165
4DGW-B nrPDB                                                          317   5e-87
6AHD-u nrPDB                                                           63   2e-10
2DT7-B nrPDB                                                           42   3e-04
2DT6-A nrPDB                                                           32   0.22 
5GSL-A nrPDB                                                           28   3.1  
4E2O-A nrPDB                                                           27   7.3  

>5ZWO-w nrPDB
          Length = 280

 Score =  575 bits (1483), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 280/280 (100%), Positives = 280/280 (100%)

Query: 1   MEPEDTQLKEDIKTTVNYIKQHGVEFENKLLEDERFSFIKKDDPLHEYYTKLMNEPTDTV 60
           MEPEDTQLKEDIKTTVNYIKQHGVEFENKLLEDERFSFIKKDDPLHEYYTKLMNEPTDTV
Sbjct: 1   MEPEDTQLKEDIKTTVNYIKQHGVEFENKLLEDERFSFIKKDDPLHEYYTKLMNEPTDTV 60

Query: 61  SGEDNDRKSEREIARPPDFLFSQYDTGISRRDMEVIKLTARYYAKDKSIVEQMISKDGEA 120
           SGEDNDRKSEREIARPPDFLFSQYDTGISRRDMEVIKLTARYYAKDKSIVEQMISKDGEA
Sbjct: 61  SGEDNDRKSEREIARPPDFLFSQYDTGISRRDMEVIKLTARYYAKDKSIVEQMISKDGEA 120

Query: 121 RLNFMNSSHPLHKTFTDFVAQYKRVYSFTGQEIKKSKRTILDNCFERTQYWEFEKDKDRE 180
           RLNFMNSSHPLHKTFTDFVAQYKRVYSFTGQEIKKSKRTILDNCFERTQYWEFEKDKDRE
Sbjct: 121 RLNFMNSSHPLHKTFTDFVAQYKRVYSFTGQEIKKSKRTILDNCFERTQYWEFEKDKDRE 180

Query: 181 HDKLVELCKIQFAAIPWDKFTQVAKFSIPEDTEIFEGSLDLEQMRLRRVQTGIKLFDSIK 240
           HDKLVELCKIQFAAIPWDKFTQVAKFSIPEDTEIFEGSLDLEQMRLRRVQTGIKLFDSIK
Sbjct: 181 HDKLVELCKIQFAAIPWDKFTQVAKFSIPEDTEIFEGSLDLEQMRLRRVQTGIKLFDSIK 240

Query: 241 PTNEEEKIVSDQGKQKGGDSKGKKRKIRAVGETRLKKSKK 280
           PTNEEEKIVSDQGKQKGGDSKGKKRKIRAVGETRLKKSKK
Sbjct: 241 PTNEEEKIVSDQGKQKGGDSKGKKRKIRAVGETRLKKSKK 280


>4DGW-B nrPDB
          Length = 152

 Score =  317 bits (811), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 151/151 (100%), Positives = 151/151 (100%)

Query: 87  GISRRDMEVIKLTARYYAKDKSIVEQMISKDGEARLNFMNSSHPLHKTFTDFVAQYKRVY 146
           GISRRDMEVIKLTARYYAKDKSIVEQMISKDGEARLNFMNSSHPLHKTFTDFVAQYKRVY
Sbjct: 2   GISRRDMEVIKLTARYYAKDKSIVEQMISKDGEARLNFMNSSHPLHKTFTDFVAQYKRVY 61

Query: 147 SFTGQEIKKSKRTILDNCFERTQYWEFEKDKDREHDKLVELCKIQFAAIPWDKFTQVAKF 206
           SFTGQEIKKSKRTILDNCFERTQYWEFEKDKDREHDKLVELCKIQFAAIPWDKFTQVAKF
Sbjct: 62  SFTGQEIKKSKRTILDNCFERTQYWEFEKDKDREHDKLVELCKIQFAAIPWDKFTQVAKF 121

Query: 207 SIPEDTEIFEGSLDLEQMRLRRVQTGIKLFD 237
           SIPEDTEIFEGSLDLEQMRLRRVQTGIKLFD
Sbjct: 122 SIPEDTEIFEGSLDLEQMRLRRVQTGIKLFD 152


>6AHD-u nrPDB
          Length = 793

 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 111/235 (47%), Gaps = 38/235 (16%)

Query: 7   QLKEDIKTTVNYIKQHGVEFENKLLEDE----RFSFIKKDDPLHEYYTKLMNE------- 55
           +++  +  T +++ ++G EFE ++ ++E    +F+F+  +DP H YY   ++E       
Sbjct: 48  EVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEGKAQ 107

Query: 56  -PTDTVS----------GEDNDRKSEREIAR--------PPDFLFSQYDTGISRRDMEVI 96
            P+  +            +   +K + ++ +        PP+F F      IS  D++V+
Sbjct: 108 EPSAAIPKVMQQQQQTTQQQLPQKVQAQVIQETIVPKEPPPEFEFIADPPSISAFDLDVV 167

Query: 97  KLTARYYAKD-KSIVEQMISKDGEA-RLNFMNSSHPLHKTFTDFVAQYKRVYSFTGQEIK 154
           KLTA++ A++ +  + Q++ K+    + +F+   H L   FT  V QY ++         
Sbjct: 168 KLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLFS 227

Query: 155 KSK------RTILDNCFERTQYWEFEKDKDREHDKLVELCKIQFAAIPWDKFTQV 203
           K K      R +LD    R ++ +F++ + ++ ++  E  ++ +A I W  F  V
Sbjct: 228 KLKKEAENPREVLDQVCYRVEWAKFQERERKKEEEEKEKERVAYAQIDWHDFVVV 282


>2DT7-B nrPDB
          Length = 85

 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 76  PPDFLFSQYDTGISRRDMEVIKLTARYYAKD-KSIVEQMISKDG-EARLNFMNSSHPLHK 133
           PP+F F      IS  D++V+KLTA++ A++ +  + Q++ K+    + +F+   H L  
Sbjct: 15  PPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFN 74

Query: 134 TFTDFVAQYKR 144
            FT  V QY +
Sbjct: 75  YFTKLVEQYTK 85



 Score = 29.6 bits (65), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 4/50 (8%)

Query: 12 IKTTVNYIKQHGVEFENKLLEDER----FSFIKKDDPLHEYYTKLMNEPT 57
          +K T  ++ ++G +F  +L++ E+    F F++    L  Y+TKL+ + T
Sbjct: 35 VKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYT 84


>2DT6-A nrPDB
          Length = 64

 Score = 32.3 bits (72), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 33/53 (62%), Gaps = 4/53 (7%)

Query: 7  QLKEDIKTTVNYIKQHGVEFENKLLEDE----RFSFIKKDDPLHEYYTKLMNE 55
          +++  +  T +++ ++G EFE ++ ++E    +F+F+  +DP H YY   ++E
Sbjct: 2  EVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSE 54


>5GSL-A nrPDB
          Length = 778

 Score = 28.5 bits (62), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 59/164 (35%), Gaps = 33/164 (20%)

Query: 56  PTDTVSGEDNDRKSEREIARPPDFLFSQYDTGISRRDMEVIKLTARYYAKDKSIVEQMIS 115
           P  +V  E  DR   R +AR                  EV    A  +  DK +   +  
Sbjct: 574 PYLSVDAEGIDRMVVRNVAR------------------EVKGGEAIAWIGDKVVGTIVRK 615

Query: 116 KDGEA-----RLNFMNSSHPLHKTFTDFVAQYKRVYSFTGQEIKKSKRTILDNCFERTQY 170
             G A     RL + +S H +H+ F D + Q + V     +E++ S R I+     R  Y
Sbjct: 616 GKGSAVILGFRLQYYSSYHDMHRKFVDKILQLQGV----KREVEVSNRDII--AIPRIHY 669

Query: 171 WEFEKDKDREHDKLVELCKIQFAAIPWDKFTQVAKFSIPEDTEI 214
                 +D E    V+   ++F      K        IP D EI
Sbjct: 670 LVLVNPRDEEVAGKVKYRGVEFEI----KMKGRGVLFIPVDVEI 709


>4E2O-A nrPDB
          Length = 454

 Score = 27.3 bits (59), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 236 FDSIKPTNEEEKIVSDQGKQKGGDSKGKKRKIRAVGE 272
           F+++ PTN++   V+D     GGD KG   K+  + E
Sbjct: 20  FNNMDPTNDQNVNVNDPKGYFGGDLKGVTAKLDYIKE 56


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

5ZWO-w nrPDB                                                          442   e-125
6AHD-u nrPDB                                                          252   1e-67
4DGW-B nrPDB                                                          250   6e-67
2DT7-B nrPDB                                                          109   1e-24

Sequences not found previously or not previously below threshold:

2DT6-A nrPDB                                                           80   1e-15
1X4O-A nrPDB                                                           41   6e-04
2E5Z-A nrPDB                                                           39   0.002
2E60-A nrPDB                                                           39   0.003
1UG0-A nrPDB                                                           37   0.009
5YSW-A nrPDB                                                           32   0.22 
6CGM-A nrPDB                                                           32   0.28 
3PS9-A nrPDB                                                           30   1.7  
5XOM-A nrPDB                                                           29   3.3  
1IV8-A nrPDB                                                           29   3.5  
1T33-A nrPDB                                                           28   4.1  
4CH7-A nrPDB                                                           28   4.4  
4WTQ-A nrPDB                                                           27   6.5  
4DVY-P nrPDB                                                           27   7.6  
4B9C-A nrPDB                                                           27   8.9  
4N8U-A nrPDB                                                           27   9.6  

>5ZWO-w nrPDB
          Length = 280

 Score =  442 bits (1138), Expect = e-125,   Method: Composition-based stats.
 Identities = 280/280 (100%), Positives = 280/280 (100%)

Query: 1   MEPEDTQLKEDIKTTVNYIKQHGVEFENKLLEDERFSFIKKDDPLHEYYTKLMNEPTDTV 60
           MEPEDTQLKEDIKTTVNYIKQHGVEFENKLLEDERFSFIKKDDPLHEYYTKLMNEPTDTV
Sbjct: 1   MEPEDTQLKEDIKTTVNYIKQHGVEFENKLLEDERFSFIKKDDPLHEYYTKLMNEPTDTV 60

Query: 61  SGEDNDRKSEREIARPPDFLFSQYDTGISRRDMEVIKLTARYYAKDKSIVEQMISKDGEA 120
           SGEDNDRKSEREIARPPDFLFSQYDTGISRRDMEVIKLTARYYAKDKSIVEQMISKDGEA
Sbjct: 61  SGEDNDRKSEREIARPPDFLFSQYDTGISRRDMEVIKLTARYYAKDKSIVEQMISKDGEA 120

Query: 121 RLNFMNSSHPLHKTFTDFVAQYKRVYSFTGQEIKKSKRTILDNCFERTQYWEFEKDKDRE 180
           RLNFMNSSHPLHKTFTDFVAQYKRVYSFTGQEIKKSKRTILDNCFERTQYWEFEKDKDRE
Sbjct: 121 RLNFMNSSHPLHKTFTDFVAQYKRVYSFTGQEIKKSKRTILDNCFERTQYWEFEKDKDRE 180

Query: 181 HDKLVELCKIQFAAIPWDKFTQVAKFSIPEDTEIFEGSLDLEQMRLRRVQTGIKLFDSIK 240
           HDKLVELCKIQFAAIPWDKFTQVAKFSIPEDTEIFEGSLDLEQMRLRRVQTGIKLFDSIK
Sbjct: 181 HDKLVELCKIQFAAIPWDKFTQVAKFSIPEDTEIFEGSLDLEQMRLRRVQTGIKLFDSIK 240

Query: 241 PTNEEEKIVSDQGKQKGGDSKGKKRKIRAVGETRLKKSKK 280
           PTNEEEKIVSDQGKQKGGDSKGKKRKIRAVGETRLKKSKK
Sbjct: 241 PTNEEEKIVSDQGKQKGGDSKGKKRKIRAVGETRLKKSKK 280


>6AHD-u nrPDB
          Length = 793

 Score =  252 bits (644), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 111/235 (47%), Gaps = 38/235 (16%)

Query: 7   QLKEDIKTTVNYIKQHGVEFENKLLEDE----RFSFIKKDDPLHEYYTKLMNE------- 55
           +++  +  T +++ ++G EFE ++ ++E    +F+F+  +DP H YY   ++E       
Sbjct: 48  EVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEGKAQ 107

Query: 56  -PTDTVSG----------EDNDRKSEREIAR--------PPDFLFSQYDTGISRRDMEVI 96
            P+  +            +   +K + ++ +        PP+F F      IS  D++V+
Sbjct: 108 EPSAAIPKVMQQQQQTTQQQLPQKVQAQVIQETIVPKEPPPEFEFIADPPSISAFDLDVV 167

Query: 97  KLTARYYAKD-KSIVEQMISKDG-EARLNFMNSSHPLHKTFTDFVAQYKRVYSFTGQEIK 154
           KLTA++ A++ +  + Q++ K+    + +F+   H L   FT  V QY ++         
Sbjct: 168 KLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLFS 227

Query: 155 KSK------RTILDNCFERTQYWEFEKDKDREHDKLVELCKIQFAAIPWDKFTQV 203
           K K      R +LD    R ++ +F++ + ++ ++  E  ++ +A I W  F  V
Sbjct: 228 KLKKEAENPREVLDQVCYRVEWAKFQERERKKEEEEKEKERVAYAQIDWHDFVVV 282


>4DGW-B nrPDB
          Length = 152

 Score =  250 bits (637), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 151/151 (100%), Positives = 151/151 (100%)

Query: 87  GISRRDMEVIKLTARYYAKDKSIVEQMISKDGEARLNFMNSSHPLHKTFTDFVAQYKRVY 146
           GISRRDMEVIKLTARYYAKDKSIVEQMISKDGEARLNFMNSSHPLHKTFTDFVAQYKRVY
Sbjct: 2   GISRRDMEVIKLTARYYAKDKSIVEQMISKDGEARLNFMNSSHPLHKTFTDFVAQYKRVY 61

Query: 147 SFTGQEIKKSKRTILDNCFERTQYWEFEKDKDREHDKLVELCKIQFAAIPWDKFTQVAKF 206
           SFTGQEIKKSKRTILDNCFERTQYWEFEKDKDREHDKLVELCKIQFAAIPWDKFTQVAKF
Sbjct: 62  SFTGQEIKKSKRTILDNCFERTQYWEFEKDKDREHDKLVELCKIQFAAIPWDKFTQVAKF 121

Query: 207 SIPEDTEIFEGSLDLEQMRLRRVQTGIKLFD 237
           SIPEDTEIFEGSLDLEQMRLRRVQTGIKLFD
Sbjct: 122 SIPEDTEIFEGSLDLEQMRLRRVQTGIKLFD 152


>2DT7-B nrPDB
          Length = 85

 Score =  109 bits (272), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 76  PPDFLFSQYDTGISRRDMEVIKLTARYYAKD-KSIVEQMISKDG-EARLNFMNSSHPLHK 133
           PP+F F      IS  D++V+KLTA++ A++ +  + Q++ K+    + +F+   H L  
Sbjct: 15  PPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFN 74

Query: 134 TFTDFVAQYKR 144
            FT  V QY +
Sbjct: 75  YFTKLVEQYTK 85



 Score = 36.6 bits (83), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 4/52 (7%)

Query: 10 EDIKTTVNYIKQHGVEFENKLLEDE----RFSFIKKDDPLHEYYTKLMNEPT 57
          + +K T  ++ ++G +F  +L++ E    +F F++    L  Y+TKL+ + T
Sbjct: 33 DVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYT 84


>2DT6-A nrPDB
          Length = 64

 Score = 79.8 bits (195), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 36/61 (59%), Gaps = 4/61 (6%)

Query: 7  QLKEDIKTTVNYIKQHGVEFENKLLEDE----RFSFIKKDDPLHEYYTKLMNEPTDTVSG 62
          +++  +  T +++ ++G EFE ++ ++E    +F+F+  +DP H YY   ++E  +  + 
Sbjct: 2  EVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEGKAQ 61

Query: 63 E 63
          E
Sbjct: 62 E 62



 Score = 32.4 bits (72), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 94  EVIKLTARYYAKDKSIVEQMISKDG--EARLNFMNSSHPLHKTFTDFVAQYKR 144
            ++  TA + A++    E  I ++     + NF+N + P H  +   V+++K 
Sbjct: 5   NIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKE 57


>1X4O-A nrPDB
          Length = 78

 Score = 40.8 bits (94), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 3  PEDTQLKEDIKTTVNYIKQHGVEFENKLLEDER----FSFI-KKDDPLHEYYTKLMNE 55
          PED + K   +    +I   G E E   L++ R    FSF+   +   + YY + ++E
Sbjct: 12 PEDEEAKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYDPNSQGYRYYRQKLDE 69


>2E5Z-A nrPDB
          Length = 90

 Score = 38.9 bits (89), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 7  QLKEDIKTTVNYIKQHGVEFENKLL--EDERFSFIKKDDPLHEYYTKL 52
           ++  I     Y+ ++G++FE  +    D+RF F++     + YY   
Sbjct: 23 DVQPVIDKLAEYVARNGLKFETSVRAKNDQRFEFLQPWHQYNAYYEFK 70



 Score = 27.4 bits (59), Expect = 7.9,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 95  VIKLTARYYAKDKSIVEQMISKDGEARLNFMNSSHPLHKTFTDFVAQY 142
           VI   A Y A++    E  +    + R  F+   H  +  + +F  Q+
Sbjct: 27  VIDKLAEYVARNGLKFETSVRAKNDQRFEFLQPWHQ-YNAYYEFKKQF 73


>2E60-A nrPDB
          Length = 101

 Score = 38.5 bits (88), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 3  PEDTQLKEDIKTTVNYIKQHGVEFE----NKLLEDERFSFIKKD---DPLHEYYTKLMNE 55
          P   ++   I+ T +++ + G +FE     K   + +F F++ D   +P +++  K M E
Sbjct: 22 PPTAKMHAIIERTASFVCRQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYYKFIQKAMKE 81

Query: 56 PTDTVSGED 64
             TV  E+
Sbjct: 82 GRYTVLAEN 90



 Score = 30.1 bits (66), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 95  VIKLTARYYAKDKSIVEQMISKDG--EARLNFMNSSHPLHKTFTDFVAQYKR 144
           +I+ TA +  +  +  E M+       ++ +F+   H L+  +  F+ +  +
Sbjct: 30  IIERTASFVCRQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYY-KFIQKAMK 80


>1UG0-A nrPDB
          Length = 88

 Score = 37.0 bits (84), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 3  PEDTQLKEDIKTTVNYIKQHGVEFENKLLEDER----FSFI-KKDDPLHEYYTKLMNE 55
          PE  + +  I+    ++ + G E E   +ED +    F+F+  K+     YY + + E
Sbjct: 22 PEGAETRRVIEKLARFVAEGGPELEKVAMEDYKDNPAFTFLHDKNSREFLYYRRKVAE 79


>5YSW-A nrPDB
          Length = 441

 Score = 32.4 bits (72), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 18  YIKQHGVEFENKLLEDERF--SFIKKDDPLHEYYTKLMN 54
           + K+   EF  +L +D+    SFI  D P H  Y KL+ 
Sbjct: 105 WFKELSPEFRERLRDDKARAGSFINMDPPEHTRYRKLLT 143


>6CGM-A nrPDB
          Length = 700

 Score = 32.0 bits (71), Expect = 0.28,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 11/84 (13%)

Query: 111 EQMISKDGEARLNFMNSSHPLHKTFTDFVAQYKRVYSFTGQEIKKSKRTILDNCFERTQY 170
           E MI KDG+ + +       +H  F D++ Q              + +  LD   E  QY
Sbjct: 15  EIMIQKDGKFQFD--KDKEAVHSYFVDYINQNT--------VFFHNLKEKLDYLVEN-QY 63

Query: 171 WEFEKDKDREHDKLVELCKIQFAA 194
           +E E       + + E+ K  +A 
Sbjct: 64  YEEEFLSLYSFEDIKEVFKTAYAK 87


>3PS9-A nrPDB
          Length = 676

 Score = 29.7 bits (65), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 6/69 (8%)

Query: 62  GEDNDRKSEREIARPPDFLFSQYDTGISRRDMEVIKLTARYYAKDKSIVEQMISKDGEAR 121
           G D+D K +    +P +  F+   T +SR D + +     Y++ D  + E      G  +
Sbjct: 2   GTDDDDKMKHYSIQPANLEFNAEGTPVSR-DFDDV-----YFSNDNGLEETRYVFLGGNQ 55

Query: 122 LNFMNSSHP 130
           L      HP
Sbjct: 56  LEVRFPEHP 64


>5XOM-A nrPDB
          Length = 393

 Score = 28.5 bits (62), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 4/84 (4%)

Query: 154 KKSKRTILDNCFERTQYWEFEKD---KDREHDKLVELCKIQFAAIPWDKFTQVAKFSIPE 210
           ++S   I+D+  +  Q  E   D   K    ++  E   I    + W     V   ++  
Sbjct: 8   QRSPVEIIDDVKDEIQKRELIYDALHKLNSPNEEKEYFNIHAWDV-WHDMISVRALTVDS 66

Query: 211 DTEIFEGSLDLEQMRLRRVQTGIK 234
           D EI++    +   ++ +  TG K
Sbjct: 67  DVEIYKVLKAMSSAKITQATTGYK 90


>1IV8-A nrPDB
          Length = 720

 Score = 28.5 bits (62), Expect = 3.5,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 6/88 (6%)

Query: 84  YDTGISRRDM-EVIKLTARYYAKDKSIVEQM-ISKDGEARLNFMNSSHPLHKTFTDFV-- 139
           YD      D+  +IK       K     E++ ++ DG    +F+N S+ L     + +  
Sbjct: 234 YDPEKYINDLRSIIKNKIIIVEKILGFQEELKLNSDGTTGYDFLNYSNLLFNFNQEIMDS 293

Query: 140 --AQYKRVYSFTGQEIKKSKRTILDNCF 165
               +        + IKK K  I+D  F
Sbjct: 294 IYENFTAEKISISESIKKIKAQIIDELF 321


>1T33-A nrPDB
          Length = 224

 Score = 28.1 bits (61), Expect = 4.1,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 18/125 (14%)

Query: 67  RKSEREIARP-PDFLFSQYDTGISRRDMEVIKLTARYYAKDKSIVEQMISKDGEARLNFM 125
            K+ER  ++P PD    +    ++ ++M ++          K I  + +S     +L   
Sbjct: 79  EKAERLFSQPAPDRDAIRELILLACKNMIMLLTQEDTVNLSKFISREQLSPTSAYQLVHE 138

Query: 126 NSSHPLHKTFTDFVAQY-------KRVYSFTGQE------IKKSKRTILDNCFERTQYWE 172
               PLH   T  VA Y        R+   T          +  K TIL     RT + +
Sbjct: 139 QVIDPLHTHLTRLVAAYTGCDANDTRMILHTHALLGEVLAFRLGKETIL----LRTGWPQ 194

Query: 173 FEKDK 177
           F+++K
Sbjct: 195 FDEEK 199


>4CH7-A nrPDB
          Length = 342

 Score = 28.1 bits (61), Expect = 4.4,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 41/112 (36%), Gaps = 17/112 (15%)

Query: 82  SQYDTGISRRDMEVIKLTA-RYYAKDKSIVEQMISKDGEARLNFMNSSH-----PLHKTF 135
                 IS  + +V++L A R   KD  ++  +       +L++ + +          T+
Sbjct: 107 LAVPPEISELE-DVVRLMAERERVKDYLVLRVVRLFKIGVKLDYESPAEKESVDTKVYTY 165

Query: 136 TDFVAQYKRVYSFTGQEIKKSKRTILDNCFERTQYWEFEKDKDREHDKLVEL 187
           T    + KR+ S T       +R  L          E+ K      ++L+E 
Sbjct: 166 TPLTEEEKRIVSITQGSFPLVERPFL----------EYAKRLRMSEEELLEK 207


>4WTQ-A nrPDB
          Length = 293

 Score = 27.4 bits (59), Expect = 6.5,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 4/63 (6%)

Query: 20  KQHGVEFENKLLEDERFSFIKKDDPLHEYYTK---LMNEPTDTVSGEDND-RKSEREIAR 75
              G  FE  + +   F  I   +  H ++       +  T  ++G D+  +  + +I  
Sbjct: 170 AHSGPNFEATVGDRVEFVMITHGEYYHTFHMHGHRWADNRTGMLTGPDDPSQVVDNKIVG 229

Query: 76  PPD 78
           P D
Sbjct: 230 PAD 232


>4DVY-P nrPDB
          Length = 876

 Score = 27.4 bits (59), Expect = 7.6,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 79/216 (36%), Gaps = 20/216 (9%)

Query: 57  TDTVSGEDNDRKSEREIARPPD-------FLFSQYDTGISRRDMEVIKLTARYYAKDKSI 109
            +T+       +++ + A  P          F + D  ++  D +   +  +    ++  
Sbjct: 3   NETIDQTRTPDQTQSQTAFDPQQFINNLQVAFIKVDNVVASFDPDQKPIVDKNDRDNRQA 62

Query: 110 VEQMISKDGEARLNFMNSSHPLHKTFTDFVAQYKRVYSFTG----QEIKKSKRTILDNCF 165
            + +     E     + +    ++ F+DF+ +   + +       +   KS +   D  +
Sbjct: 63  FDGISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLIDVESSTKSFQKFGDQRY 122

Query: 166 E-RTQYWEFEKDKDREHDKLVELCKIQFAAIPWDKFTQVAKFSIPEDTEIFEGSLDLEQM 224
           +  T +   +KD  + + + +          P     + A+F +    + F G +   Q+
Sbjct: 123 QIFTSWVSMQKDPSKINTRSIRNFMENIIQPPIPDDKEKAEF-LKSAKQSFAGIIIGNQI 181

Query: 225 RLRRVQTGIKLFD-SIKPTNEEEKIVSDQGKQKGGD 259
           R  +   G+  FD S+K   E EK     G   GGD
Sbjct: 182 RTDQKFMGV--FDESLKERQEAEK----NGGPTGGD 211


>4B9C-A nrPDB
          Length = 150

 Score = 27.0 bits (58), Expect = 8.9,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 21/111 (18%)

Query: 78  DFLFSQYDTGISRRDMEVIKLTARYYAKDKSIVEQM----------ISKDGEARLNFMNS 127
           DF F  ++TG    D++ +K+  RYY K+   +++M            KD + R   +  
Sbjct: 22  DFSFRMFNTGNEAIDLKDVKV--RYYFKEDVSIDEMNWAVYFYSLGSEKDVQCRFYELPG 79

Query: 128 SHPLHKTFTDFVAQYKRVYSFTGQEIKKSKRTILDNCFERTQYWEFEKDKD 178
               +K             +F    +  +    +   F +  + +FE+  D
Sbjct: 80  KKEANKYLE---------ITFKSGTLSPNDVMYITGEFYKNDWTKFEQRDD 121


>4N8U-A nrPDB
          Length = 281

 Score = 27.0 bits (58), Expect = 9.6,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 4/63 (6%)

Query: 20  KQHGVEFENKLLEDERFSFIKKDDPLHEYYTK---LMNEPTDTVSGEDNDRKS-EREIAR 75
              G  FE  + +   F  I   +  H ++       +  T  ++G D+  +  + +I  
Sbjct: 170 AHSGPNFEATVGDRVEFVMITHGEYYHTFHMHGHRWADNRTGLLTGPDDPSQVIDNKIVG 229

Query: 76  PPD 78
           P D
Sbjct: 230 PAD 232


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.307    0.131    0.346 

Lambda     K      H
   0.267   0.0408    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,803,007
Number of Sequences: 36641
Number of extensions: 440259
Number of successful extensions: 1300
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1243
Number of HSP's gapped (non-prelim): 60
length of query: 280
length of database: 10,336,785
effective HSP length: 96
effective length of query: 184
effective length of database: 6,819,249
effective search space: 1254741816
effective search space used: 1254741816
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.5 bits)
S2: 58 (27.0 bits)