BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= P32523
(503 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
5LJ5-t nrPDB 1042 0.0
4ZB4-A nrPDB 757 0.0
5Z56-q nrPDB 102 3e-22
3JB9-S nrPDB 101 9e-22
5M88-A nrPDB 86 3e-17
1Y80-A nrPDB 33 0.28
4LG8-A nrPDB 32 0.56
5OPT-p nrPDB 31 0.96
4XI1-A nrPDB 31 1.2
5MRF-DD nrPDB 31 1.2
4V8M-A7 nrPDB 31 1.4
2C2L-A nrPDB 30 2.4
2F42-A nrPDB 30 2.9
4WZ3-B nrPDB 30 2.9
5L75-G nrPDB 29 5.2
2C2V-S nrPDB 29 5.3
1WGM-A nrPDB 28 6.8
2JLW-A nrPDB 28 7.3
2WZQ-A nrPDB 28 8.5
>5LJ5-t nrPDB
Length = 503
Score = 1042 bits (2695), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/503 (100%), Positives = 503/503 (100%)
Query: 1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVPSAQQA 60
MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVPSAQQA
Sbjct: 1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVPSAQQA 60
Query: 61 SLTESTNSATLKANYSIPNLLTSLQNEWDAIMLENFKLRSTLDSLTKKLSTVMYERDAAK 120
SLTESTNSATLKANYSIPNLLTSLQNEWDAIMLENFKLRSTLDSLTKKLSTVMYERDAAK
Sbjct: 61 SLTESTNSATLKANYSIPNLLTSLQNEWDAIMLENFKLRSTLDSLTKKLSTVMYERDAAK 120
Query: 121 LVAAQLLMEKNEDSKDLPKSSQQAVAITREEFLQGLLQSSRDFVARGKLKAPKWPILKNL 180
LVAAQLLMEKNEDSKDLPKSSQQAVAITREEFLQGLLQSSRDFVARGKLKAPKWPILKNL
Sbjct: 121 LVAAQLLMEKNEDSKDLPKSSQQAVAITREEFLQGLLQSSRDFVARGKLKAPKWPILKNL 180
Query: 181 ELLQAQNYSRNIKTFPYKELNKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPR 240
ELLQAQNYSRNIKTFPYKELNKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPR
Sbjct: 181 ELLQAQNYSRNIKTFPYKELNKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPR 240
Query: 241 TGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTE 300
TGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTE
Sbjct: 241 TGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTE 300
Query: 301 YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLS 360
YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLS
Sbjct: 301 YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLS 360
Query: 361 SPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFK 420
SPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFK
Sbjct: 361 SPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFK 420
Query: 421 TGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTKDEESALCLQSDTADFTDMDVV 480
TGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTKDEESALCLQSDTADFTDMDVV
Sbjct: 421 TGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTKDEESALCLQSDTADFTDMDVV 480
Query: 481 CGDGGIAAILKTNDSFNIVALTP 503
CGDGGIAAILKTNDSFNIVALTP
Sbjct: 481 CGDGGIAAILKTNDSFNIVALTP 503
>4ZB4-A nrPDB
Length = 360
Score = 757 bits (1954), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/360 (100%), Positives = 360/360 (100%)
Query: 144 AVAITREEFLQGLLQSSRDFVARGKLKAPKWPILKNLELLQAQNYSRNIKTFPYKELNKS 203
AVAITREEFLQGLLQSSRDFVARGKLKAPKWPILKNLELLQAQNYSRNIKTFPYKELNKS
Sbjct: 1 AVAITREEFLQGLLQSSRDFVARGKLKAPKWPILKNLELLQAQNYSRNIKTFPYKELNKS 60
Query: 204 MYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLYPG 263
MYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLYPG
Sbjct: 61 MYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLYPG 120
Query: 264 NQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYI 323
NQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYI
Sbjct: 121 NQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYI 180
Query: 324 VHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFA 383
VHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFA
Sbjct: 181 VHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFA 240
Query: 384 DNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESN 443
DNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESN
Sbjct: 241 DNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESN 300
Query: 444 SLTIYKFDKKTKNWTKDEESALCLQSDTADFTDMDVVCGDGGIAAILKTNDSFNIVALTP 503
SLTIYKFDKKTKNWTKDEESALCLQSDTADFTDMDVVCGDGGIAAILKTNDSFNIVALTP
Sbjct: 301 SLTIYKFDKKTKNWTKDEESALCLQSDTADFTDMDVVCGDGGIAAILKTNDSFNIVALTP 360
>5Z56-q nrPDB
Length = 504
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 81/129 (62%), Gaps = 8/129 (6%)
Query: 1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVPSAQQA 60
++C+IS +VP P +SP S ++E+ L+E+Y+ + G DPI N+PLS E++++I
Sbjct: 3 LICSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLIDI---KVAH 59
Query: 61 SLTESTNSATLKANYSIPNLLTSLQNEWDAIMLENFKLRSTLDSLTKKLSTVMYERDAAK 120
+ SAT SIP +L +LQ+EWDA+ML +F LR L + ++LS +Y+ DAA
Sbjct: 60 PIRPKPPSAT-----SIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAAC 114
Query: 121 LVAAQLLME 129
V A+L E
Sbjct: 115 RVIARLTKE 123
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 338 LHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTV 397
H D L+ + D + +++L ++ FP I + F++NGY++ D +
Sbjct: 358 FHPDGLIFGTGTMDSQIKIWDLKERTNVAN-FP-GHSGPITSIAFSENGYYLATAADDSS 415
Query: 398 V-CFDLRK 404
V +DLRK
Sbjct: 416 VKLWDLRK 423
>3JB9-S nrPDB
Length = 488
Score = 101 bits (251), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 133/510 (26%), Positives = 215/510 (42%), Gaps = 111/510 (21%)
Query: 1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEI-VPSAQQ 59
M C+ISG+ P+ PV+S S ++EK L+EQ +++T DP+T + ++E++V + VP +
Sbjct: 1 MFCSISGETPKEPVISRVSGNVYEKRLIEQVIRETSKDPVTQQECTLEDLVPVKVPDFVR 60
Query: 60 ASLTESTNSATLKANYSIPNLLTSLQNEWDAIMLENFKLRSTLDSLTKKLSTVMY----- 114
+T S+P LL+ Q EWD++ LE F+LR L ++LST +Y
Sbjct: 61 PRPPSAT---------SLPALLSLFQEEWDSVALEQFELRRNLTETKQELSTALYSLDAA 111
Query: 115 ---------ERDAAKLVAAQLL---------------MEKNEDSKDLPKSSQQAVAITRE 150
ERD A+ A+ +E E L S + V T +
Sbjct: 112 LRVISRLTKERDEAREALAKFSDNIGTVSSKTIEVQEVEMGESDDQLKTSLRSTVEKTFQ 171
Query: 151 EFLQGLLQSSRDFVARGKLKAPKWPILKNL-ELLQAQNYS--RNIKT------FPYKELN 201
E L S R R KL+ PKW + +LLQA + N++T FP E N
Sbjct: 172 E-----LSSKRK---RTKLQ-PKWATDDAVSQLLQATPSTILENLETESTTSFFPSPE-N 221
Query: 202 KS----MYYDKWVCM--------CRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAII 249
S ++ D+ +C+ E AL L SK + T + + E P +
Sbjct: 222 SSFVLCLHKDELLCLDIQSNSTLKIFEGSALACCWLTSSKI--AVATADAISIFEFP-VS 278
Query: 250 SRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRG 309
S G + + P + I I D K N ++ H + EY + A N
Sbjct: 279 SSGLQS---VGEPTSSIPI-DEKVN---------------FLQAHP--SGEYLLAASNEK 317
Query: 310 TIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRF 369
F V++ +S +H D L +G L + SS ++ +
Sbjct: 318 CYIFSLKSQ-----VYNITVAQHITSLAVHPDGNLFVAGLENGELRFFETSSGNELTKFG 372
Query: 370 PVDEEAKIKEVKFADNGYWMVVEC--DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYD 427
P + +K ++F +NGYW+VV D + +DLRK P T K V+ D
Sbjct: 373 P--HSSPVKTLQFGENGYWLVVTTNDDSDIFIWDLRKSELVQKIPLQT----KVAAVSLD 426
Query: 428 IDDSGKNMIAYSNESNSLTIYKFDKKTKNW 457
I + + S++ +L ++ + K +K+W
Sbjct: 427 I----TSQLLVSSDGETLYVHIYVKSSKSW 452
>5M88-A nrPDB
Length = 136
Score = 86.3 bits (212), Expect = 3e-17, Method: Composition-based stats.
Identities = 50/140 (35%), Positives = 84/140 (60%), Gaps = 8/140 (5%)
Query: 1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGN-DPITNEPLSIEEIVEIVPSAQQ 59
MLCA+SG++P PV+S K+ +FEK L+ +Y+++ N +P T E L E +++P
Sbjct: 1 MLCALSGEIPEEPVVSKKTGVLFEKRLILKYLEEHNNIEPGTTEELDPE--TDLLPIKTS 58
Query: 60 ASLTESTNSATLKANYSIPNLLTSLQNEWDAIMLENFKLRSTLDSLTKKLSTVMYERDAA 119
+ + T SIP+LL + Q+EWDA++LE + R L + ++L+T +Y+ DAA
Sbjct: 59 RVVRPRPPNFT-----SIPSLLKAFQDEWDALVLETYTTREQLARVREELATALYQHDAA 113
Query: 120 KLVAAQLLMEKNEDSKDLPK 139
V A+L E++E + L +
Sbjct: 114 VRVIARLTRERDEAREALAR 133
>1Y80-A nrPDB
Length = 210
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 410 AYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIY---------KFDKKTKNWTKD 460
A+ ++ + GTV D+ D GKN++A ES T+Y KF + K + D
Sbjct: 82 AFDMPSVGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPD 141
>4LG8-A nrPDB
Length = 354
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 338 LHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTV 397
H D L+ + D + +++L ++ FP I + F++NGY++ D +
Sbjct: 208 FHPDGLIFGTGTMDSQIKIWDLKERTNVAN-FP-GHSGPITSIAFSENGYYLATAADDSS 265
Query: 398 V-CFDLRK 404
V +DLRK
Sbjct: 266 VKLWDLRK 273
>5OPT-p nrPDB
Length = 318
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 341 DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCF 400
D L A DG+ +++L+ + S + A I ++ F+ N YWM ++ + F
Sbjct: 207 DGSLCASSDKDGVARLWDLTKGEALSE---MAAGAPINQICFSPNRYWMCAATEKGIRIF 263
Query: 401 DLR-KDV 406
DL KDV
Sbjct: 264 DLENKDV 270
>4XI1-A nrPDB
Length = 101
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIV 51
LC IS + + PV++ + + ++++ L ++ TGN T + LSI+++V
Sbjct: 29 FLCPISKTLIKTPVITAQGK-VYDQEALSNFLIATGNKDETGKKLSIDDVV 78
>5MRF-DD nrPDB
Length = 486
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 42 NEPLSIEEIVEIVPSAQQASLTESTNSA 69
NEPLSI+E+ + +P Q + L ES N+A
Sbjct: 260 NEPLSIDELKQGLPEIQDSQLLESLNNA 287
>4V8M-A7 nrPDB
Length = 318
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 341 DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCF 400
D L A DG+ +++L+ + S + A I ++ F+ N YWM ++ + F
Sbjct: 207 DGSLCASSDKDGVARLWDLTKGEALSE---MAAGAPINQICFSPNRYWMCAATEKGIRIF 263
Query: 401 DLR-KDV 406
DL KD+
Sbjct: 264 DLENKDI 270
>2C2L-A nrPDB
Length = 281
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Query: 2 LCA-ISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGN-DPITNEPLSIEEIV 51
LC IS ++ R P ++P T +++ +E++++ G+ +P+T PL+ E+++
Sbjct: 209 LCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLTQEQLI 259
>2F42-A nrPDB
Length = 179
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Query: 2 LCA-ISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGN-DPITNEPLSIEEIV 51
LC IS ++ R P ++P T +++ +E++++ G+ DP+T PL+ ++++
Sbjct: 107 LCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFDPVTRSPLTQDQLI 157
>4WZ3-B nrPDB
Length = 215
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIV 51
LC IS + + PV++ + + ++++ L ++ TGN T + LSI+++V
Sbjct: 130 FLCPISKTLIKTPVITAQGK-VYDQEALSNFLIATGNKDETGKKLSIDDVV 179
>5L75-G nrPDB
Length = 360
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 10/58 (17%)
Query: 449 KFDKKTKNWTKDEESALCLQSDTADFTDMDVVCGDGGIAAILKTN---DSFNIVALTP 503
KFD + K W Q D +D TD V G ++ KTN D +VAL P
Sbjct: 196 KFDSENKVWRLS-------QVDESDLTDPKQVTGSQMVSGTWKTNLTPDKLGVVALDP 246
>2C2V-S nrPDB
Length = 78
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Query: 2 LCA-ISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGN-DPITNEPLSIEEIV 51
LC IS ++ R P ++P T +++ +E++++ G+ +P+T PL+ E+++
Sbjct: 6 LCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLTQEQLI 56
>1WGM-A nrPDB
Length = 98
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 13 PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI 50
PV+ P SR ++S + +++ DP PL++++I
Sbjct: 35 PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQI 72
>2JLW-A nrPDB
Length = 451
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 305 ADNRGTIGFQSYEDDSQYIVHS--AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSP 362
A RG IG ++D QY+ K+D +++ K LL +Y+P+GI+ L P
Sbjct: 288 AQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAK-MLLDNIYTPEGIIP--TLFGP 344
Query: 363 DQASSRFPVDEEAKIK 378
++ ++ +D E +++
Sbjct: 345 EREKTQ-AIDGEFRLR 359
>2WZQ-A nrPDB
Length = 619
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 305 ADNRGTIGFQSYEDDSQYIVHS--AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSP 362
A RG IG ++D QY+ K+D +++ K LL +Y+P+GI+ L P
Sbjct: 456 AQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAK-MLLDNIYTPEGIIP--TLFGP 512
Query: 363 DQASSRFPVDEEAKIK 378
++ ++ +D E +++
Sbjct: 513 EREKTQ-AIDGEFRLR 527
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
5LJ5-t nrPDB 858 0.0
4ZB4-A nrPDB 659 0.0
3JB9-S nrPDB 504 e-143
5Z56-q nrPDB 248 3e-66
5M88-A nrPDB 191 5e-49
Sequences not found previously or not previously below threshold:
5M89-A nrPDB 90 2e-18
4LG8-A nrPDB 68 1e-11
5OPT-p nrPDB 63 2e-10
4V8M-A7 nrPDB 56 3e-08
3DM0-A nrPDB 49 4e-06
6G51-g nrPDB 48 9e-06
4V6W-Ag nrPDB 45 6e-05
5WLC-LO nrPDB 45 7e-05
5I2T-A nrPDB 45 7e-05
5WYK-BB nrPDB 45 7e-05
3JAP-g nrPDB 44 1e-04
6HHQ-h nrPDB 44 2e-04
2C2V-S nrPDB 43 2e-04
2C2L-A nrPDB 43 2e-04
6CHG-A nrPDB 43 3e-04
2F42-A nrPDB 43 3e-04
2H9P-A nrPDB 42 6e-04
2OXQ-C nrPDB 42 7e-04
5WLC-LN nrPDB 41 0.001
6EMK-B nrPDB 41 0.001
5M25-A nrPDB 41 0.002
5MWJ-A nrPDB 39 0.005
3CRC-A nrPDB 39 0.006
4WZ3-B nrPDB 38 0.007
6GMH-W nrPDB 37 0.016
4WZ0-A nrPDB 36 0.055
3ACP-A nrPDB 35 0.062
4V7E-Bg nrPDB 34 0.11
2QJ0-A nrPDB 34 0.12
4E5Z-B nrPDB 34 0.12
5K19-A nrPDB 33 0.25
5K0Y-T nrPDB 33 0.27
3H15-A nrPDB 33 0.39
3DW8-B nrPDB 33 0.40
1WGM-A nrPDB 32 0.81
3MKQ-A nrPDB 31 0.92
2YNP-A nrPDB 31 0.92
1J37-A nrPDB 31 0.95
6EOJ-D nrPDB 31 1.1
2P9P-C nrPDB 31 1.1
3PXI-A nrPDB 31 1.5
3PXG-A nrPDB 31 1.5
3J3U-A nrPDB 31 1.5
3HTK-C nrPDB 30 1.9
>5LJ5-t nrPDB
Length = 503
Score = 858 bits (2217), Expect = 0.0, Method: Composition-based stats.
Identities = 503/503 (100%), Positives = 503/503 (100%)
Query: 1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVPSAQQA 60
MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVPSAQQA
Sbjct: 1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVPSAQQA 60
Query: 61 SLTESTNSATLKANYSIPNLLTSLQNEWDAIMLENFKLRSTLDSLTKKLSTVMYERDAAK 120
SLTESTNSATLKANYSIPNLLTSLQNEWDAIMLENFKLRSTLDSLTKKLSTVMYERDAAK
Sbjct: 61 SLTESTNSATLKANYSIPNLLTSLQNEWDAIMLENFKLRSTLDSLTKKLSTVMYERDAAK 120
Query: 121 LVAAQLLMEKNEDSKDLPKSSQQAVAITREEFLQGLLQSSRDFVARGKLKAPKWPILKNL 180
LVAAQLLMEKNEDSKDLPKSSQQAVAITREEFLQGLLQSSRDFVARGKLKAPKWPILKNL
Sbjct: 121 LVAAQLLMEKNEDSKDLPKSSQQAVAITREEFLQGLLQSSRDFVARGKLKAPKWPILKNL 180
Query: 181 ELLQAQNYSRNIKTFPYKELNKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPR 240
ELLQAQNYSRNIKTFPYKELNKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPR
Sbjct: 181 ELLQAQNYSRNIKTFPYKELNKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPR 240
Query: 241 TGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTE 300
TGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTE
Sbjct: 241 TGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTE 300
Query: 301 YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLS 360
YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLS
Sbjct: 301 YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLS 360
Query: 361 SPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFK 420
SPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFK
Sbjct: 361 SPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFK 420
Query: 421 TGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTKDEESALCLQSDTADFTDMDVV 480
TGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTKDEESALCLQSDTADFTDMDVV
Sbjct: 421 TGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTKDEESALCLQSDTADFTDMDVV 480
Query: 481 CGDGGIAAILKTNDSFNIVALTP 503
CGDGGIAAILKTNDSFNIVALTP
Sbjct: 481 CGDGGIAAILKTNDSFNIVALTP 503
>4ZB4-A nrPDB
Length = 360
Score = 659 bits (1700), Expect = 0.0, Method: Composition-based stats.
Identities = 360/360 (100%), Positives = 360/360 (100%)
Query: 144 AVAITREEFLQGLLQSSRDFVARGKLKAPKWPILKNLELLQAQNYSRNIKTFPYKELNKS 203
AVAITREEFLQGLLQSSRDFVARGKLKAPKWPILKNLELLQAQNYSRNIKTFPYKELNKS
Sbjct: 1 AVAITREEFLQGLLQSSRDFVARGKLKAPKWPILKNLELLQAQNYSRNIKTFPYKELNKS 60
Query: 204 MYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLYPG 263
MYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLYPG
Sbjct: 61 MYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLYPG 120
Query: 264 NQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYI 323
NQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYI
Sbjct: 121 NQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYI 180
Query: 324 VHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFA 383
VHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFA
Sbjct: 181 VHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFA 240
Query: 384 DNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESN 443
DNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESN
Sbjct: 241 DNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESN 300
Query: 444 SLTIYKFDKKTKNWTKDEESALCLQSDTADFTDMDVVCGDGGIAAILKTNDSFNIVALTP 503
SLTIYKFDKKTKNWTKDEESALCLQSDTADFTDMDVVCGDGGIAAILKTNDSFNIVALTP
Sbjct: 301 SLTIYKFDKKTKNWTKDEESALCLQSDTADFTDMDVVCGDGGIAAILKTNDSFNIVALTP 360
>3JB9-S nrPDB
Length = 488
Score = 504 bits (1297), Expect = e-143, Method: Composition-based stats.
Identities = 131/509 (25%), Positives = 215/509 (42%), Gaps = 109/509 (21%)
Query: 1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEI-VPSAQQ 59
M C+ISG+ P+ PV+S S ++EK L+EQ +++T DP+T + ++E++V + VP +
Sbjct: 1 MFCSISGETPKEPVISRVSGNVYEKRLIEQVIRETSKDPVTQQECTLEDLVPVKVPDFVR 60
Query: 60 ASLTESTNSATLKANYSIPNLLTSLQNEWDAIMLENFKLRSTLDSLTKKLSTVMYERDAA 119
+T S+P LL+ Q EWD++ LE F+LR L ++LST +Y DAA
Sbjct: 61 PRPPSAT---------SLPALLSLFQEEWDSVALEQFELRRNLTETKQELSTALYSLDAA 111
Query: 120 KLVAAQLLMEKN-----------------------------EDSKDLPKSSQQAVAITRE 150
V ++L E++ E L S + V T +
Sbjct: 112 LRVISRLTKERDEAREALAKFSDNIGTVSSKTIEVQEVEMGESDDQLKTSLRSTVEKTFQ 171
Query: 151 EFLQGLLQSSRDFVARGKLKAPKWPILKNL-ELLQAQNYS--RNIKT------FPYKELN 201
E L S R R KL+ PKW + +LLQA + N++T FP E +
Sbjct: 172 E-----LSSKRK---RTKLQ-PKWATDDAVSQLLQATPSTILENLETESTTSFFPSPENS 222
Query: 202 K---SMYYDKWVC--------MCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAIIS 250
++ D+ +C + E AL L SK + T + + E P + S
Sbjct: 223 SFVLCLHKDELLCLDIQSNSTLKIFEGSALACCWLTSSKI--AVATADAISIFEFP-VSS 279
Query: 251 RGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGT 310
G + + P + I I D K N ++ H + EY + A N
Sbjct: 280 SGLQS---VGEPTSSIPI-DEKVN---------------FLQAHP--SGEYLLAASNEKC 318
Query: 311 IGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFP 370
F V++ +S +H D L +G L + SS ++ + P
Sbjct: 319 YIFSLKSQ-----VYNITVAQHITSLAVHPDGNLFVAGLENGELRFFETSSGNELTKFGP 373
Query: 371 VDEEAKIKEVKFADNGYWMVVEC--DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDI 428
+ +K ++F +NGYW+VV D + +DLRK P T K V+ DI
Sbjct: 374 --HSSPVKTLQFGENGYWLVVTTNDDSDIFIWDLRKSELVQKIPLQT----KVAAVSLDI 427
Query: 429 DDSGKNMIAYSNESNSLTIYKFDKKTKNW 457
+ + S++ +L ++ + K +K+W
Sbjct: 428 ----TSQLLVSSDGETLYVHIYVKSSKSW 452
>5Z56-q nrPDB
Length = 504
Score = 248 bits (633), Expect = 3e-66, Method: Composition-based stats.
Identities = 106/486 (21%), Positives = 191/486 (39%), Gaps = 48/486 (9%)
Query: 1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVPSAQQA 60
++C+IS +VP P +SP S ++E+ L+E+Y+ + G DPI N+PLS E++++I
Sbjct: 3 LICSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLIDI---KVAH 59
Query: 61 SLTESTNSATLKANYSIPNLLTSLQNEWDAIMLENFKLRSTLDSLTKKLSTVMYERDAAK 120
+ SAT SIP +L +LQ+EWDA+ML +F LR L + ++LS +Y+ DAA
Sbjct: 60 PIRPKPPSAT-----SIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAAC 114
Query: 121 LVAAQLLMEKNEDSKDLPKSSQQAVAITREEFL--QGLLQSSRDFVARGKLKAPKWPILK 178
V A+L E + L QA I + Q + + + + G+L I++
Sbjct: 115 RVIARLTKEVTAAREALATLKPQAGLIVPQAVPSSQPSVVGAGEPMDLGELVGMTPEIIQ 174
Query: 179 NLE---LLQAQNYSRNIKTFPY---KELNKSMYYDKWVCMCRCEDG-----ALHFTQLKD 227
L+ + + KT P K S Y + AL
Sbjct: 175 KLQDKATVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSASIPGILALDLCPSDT 234
Query: 228 SKTITTITTPNPR----TGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVD 283
+K +T N + + A + +++ +Q + + + +R V
Sbjct: 235 NKILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVFSASPDATIRIWSVP 294
Query: 284 SANEIIYMYGHNE--------VNTEYFIWADNRGTIGFQ-SYEDDSQYIVHSAKSDVEYS 334
+A+ + + H +Y + + + F V S +
Sbjct: 295 NASCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDETSGCSLT 354
Query: 335 SGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC- 393
H D L+ + D + +++L ++ I + F++NGY++
Sbjct: 355 CAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANF--PGHSGPITSIAFSENGYYLATAAD 412
Query: 394 DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK 453
D +V +DLRK E K + D SG + + + +
Sbjct: 413 DSSVKLWDLRKLKNFKTLQLDNNFEVK----SLIFDQSGTYLALGGTD-----VQIYI-- 461
Query: 454 TKNWTK 459
K WT+
Sbjct: 462 CKQWTE 467
>5M88-A nrPDB
Length = 136
Score = 191 bits (486), Expect = 5e-49, Method: Composition-based stats.
Identities = 50/140 (35%), Positives = 84/140 (60%), Gaps = 8/140 (5%)
Query: 1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGN-DPITNEPLSIEEIVEIVPSAQQ 59
MLCA+SG++P PV+S K+ +FEK L+ +Y+++ N +P T E L E +++P
Sbjct: 1 MLCALSGEIPEEPVVSKKTGVLFEKRLILKYLEEHNNIEPGTTEELDPE--TDLLPIKTS 58
Query: 60 ASLTESTNSATLKANYSIPNLLTSLQNEWDAIMLENFKLRSTLDSLTKKLSTVMYERDAA 119
+ + T SIP+LL + Q+EWDA++LE + R L + ++L+T +Y+ DAA
Sbjct: 59 RVVRPRPPNFT-----SIPSLLKAFQDEWDALVLETYTTREQLARVREELATALYQHDAA 113
Query: 120 KLVAAQLLMEKNEDSKDLPK 139
V A+L E++E + L +
Sbjct: 114 VRVIARLTRERDEAREALAR 133
>5M89-A nrPDB
Length = 329
Score = 90.3 bits (222), Expect = 2e-18, Method: Composition-based stats.
Identities = 62/332 (18%), Positives = 119/332 (35%), Gaps = 45/332 (13%)
Query: 133 DSKDLPKSSQQAVAITREEFLQGLLQSSRDFVARGKLKAPK-WPILKNLELLQAQNYSR- 190
DS+ L + + V +++ ++ R K P+ W ++ LQ Y+
Sbjct: 2 DSESLSEGLVEHVNEVQQQLMK----------TRKKRPIPQGWATADDVAALQQVAYTDL 51
Query: 191 NIKTFPYKELNKSMYYDKWVCMCRCE-DGALHFTQLKDSKTITTITTPNPRTGGEHPAII 249
N+ +L C DG L + +K T+ P T E
Sbjct: 52 NVTQASSLDLENE-------CAAVGGLDGKLDIYSVVANKVERTLDIGEPVTATEWTG-- 102
Query: 250 SRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRG 309
++++ + + D+ + A + + H
Sbjct: 103 -----TKVVIGTAKGWVKVYDAGRESATFQTH---AGPVTGLAVHP--GGRILASVGVDK 152
Query: 310 TIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRF 369
+ F Y+ ++ V +D ++ H D L A + G + V++ ++ +QA S F
Sbjct: 153 SFVF--YDLETGERVARGYADAALTTCAFHPDGNLFAAGTQTGHILVFHTTTLEQAES-F 209
Query: 370 PVDEEAKIKEVKFADNGYWMVVECD--QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYD 427
P+ I+ + F++NG+W +V FDLRK A + E +TG V
Sbjct: 210 PLG--TPIQALAFSENGFWFAATGKGTSSVTIFDLRKSGAAAA-----VKELQTGEV-LS 261
Query: 428 IDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK 459
I + +T+ + K TK+W++
Sbjct: 262 ISWDYTGQYLATGGGTGVTVQMYTKATKSWSE 293
>4LG8-A nrPDB
Length = 354
Score = 67.6 bits (163), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/212 (15%), Positives = 71/212 (33%), Gaps = 24/212 (11%)
Query: 258 LLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEV--------NTEYFIWADNRG 309
++ +P + + + + +R V +A+ + + H +Y + + +
Sbjct: 120 VVFHPSQDL-VFSASPDATIRIWSVPNASCVQVVRAHESAVTGLSLHATGDYLLSSSDDQ 178
Query: 310 TIGFQ-SYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSR 368
F V S + H D L+ + D + +++L ++
Sbjct: 179 YWAFSDIQTGRVLTKVTDETSGCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANF 238
Query: 369 FPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYD 427
I + F++NGY++ D +V +DLRK E K +
Sbjct: 239 --PGHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQLDNNFEVK----SLI 292
Query: 428 IDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK 459
D SG + + + + K WT+
Sbjct: 293 FDQSGTYLALGGTD-----VQIYI--CKQWTE 317
Score = 32.5 bits (72), Expect = 0.39, Method: Composition-based stats.
Identities = 14/106 (13%), Positives = 35/106 (33%), Gaps = 4/106 (3%)
Query: 295 NEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGIL 354
+ ++ + F + + + +S V H L+ SPD +
Sbjct: 81 PSDTNKILTGGADKNVVVFDKSSEQILATLKGHT--KKVTSVVFHPSQDLVFSASPDATI 138
Query: 355 DVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCF 400
++ S P+ + + E+ + + G +++ D F
Sbjct: 139 RIW--SVPNASCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAF 182
>5OPT-p nrPDB
Length = 318
Score = 63.3 bits (152), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/238 (19%), Positives = 82/238 (34%), Gaps = 38/238 (15%)
Query: 249 ISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYG---HNEVNTEYFIWA 305
+ G C L + + +++ S N+ + D+A + + G H + W
Sbjct: 96 LQTGVCQHKFLGHTKDVLSVTFSPDNRQIVSGGRDNALRVWNVKGECLHTLGRGAHTDWV 155
Query: 306 DNRGTIGFQSYED---------DSQYIVHSAKSDV----------EYSSGVLHKDSLLLA 346
+ F + D+ V S +S + D L A
Sbjct: 156 S---CVRFSPSLETPLIVSGGWDNLVKVWDIASGRLLTDLKGHTNYITSVTVSPDGSLCA 212
Query: 347 LYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLR-KD 405
DG+ +++L+ + S + A I ++ F+ N YWM ++ + FDL KD
Sbjct: 213 SSDKDGVARLWDLTKGEALSE---MAAGAPINQICFSPNRYWMCAATEKGIRIFDLENKD 269
Query: 406 VGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTKDEES 463
V P KT IA+S + N+L D + W+ E +
Sbjct: 270 VIVELAPEAQQKSKKTPECM---------SIAWSADGNTLYSGYTDNVIRVWSVSEHA 318
>4V8M-A7 nrPDB
Length = 318
Score = 56.4 bits (134), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 13/133 (9%)
Query: 332 EYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVV 391
+S + D L A DG+ +++L+ + S + A I ++ F+ N YWM
Sbjct: 198 YVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSE---MAAGAPINQICFSPNRYWMCA 254
Query: 392 ECDQTVVCFDLR-KDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKF 450
++ + FDL KD+ P + + IA+S + ++L
Sbjct: 255 ATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECV---------SIAWSADGSTLYSGYT 305
Query: 451 DKKTKNWTKDEES 463
D + W E +
Sbjct: 306 DNVIRVWGVSENA 318
>3DM0-A nrPDB
Length = 694
Score = 49.1 bits (115), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/130 (16%), Positives = 47/130 (36%), Gaps = 7/130 (5%)
Query: 332 EYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVV 391
S+ + D L A DG++ +++L+ + S ++ + I + F+ N YW+
Sbjct: 563 YVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS---LEANSVIHALCFSPNRYWLCA 619
Query: 392 ECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGK----NMIAYSNESNSLTI 447
+ + +DL E + + K + +S + ++L
Sbjct: 620 ATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFS 679
Query: 448 YKFDKKTKNW 457
D + W
Sbjct: 680 GYTDGVIRVW 689
>6G51-g nrPDB
Length = 317
Score = 47.9 bits (112), Expect = 9e-06, Method: Composition-based stats.
Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 9/126 (7%)
Query: 332 EYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVV 391
++ + D L A DG +++L+ + +D I + F+ N YW+
Sbjct: 194 YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL---YTLDGGDIINALCFSPNRYWLCA 250
Query: 392 ECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFD 451
++ +DL + I + + + +A+S + +L D
Sbjct: 251 ATGPSIKIWDLEGKIIVDELKQEVI------STSSKAEPPQCTSLAWSADGQTLFAGYTD 304
Query: 452 KKTKNW 457
+ W
Sbjct: 305 NLVRVW 310
>4V6W-Ag nrPDB
Length = 318
Score = 45.2 bits (105), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/128 (18%), Positives = 46/128 (35%), Gaps = 13/128 (10%)
Query: 332 EYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVV 391
++ + D L D +++L+ + ++ I + F+ N YW+ V
Sbjct: 195 YLNTVTVSPDGSLCTSGGKDSKALLWDLNDGKNL---YTLEHNDIINALCFSPNRYWLCV 251
Query: 392 ECDQTVVCFDL--RKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYK 449
++ +DL +K V L P P K D +A+S + +L
Sbjct: 252 AYGPSIKIWDLACKKTVEELR-PEVVSPTSKA-------DQPQCLSLAWSTDGQTLFAGY 303
Query: 450 FDKKTKNW 457
D + W
Sbjct: 304 SDNTIRVW 311
>5WLC-LO nrPDB
Length = 923
Score = 45.2 bits (105), Expect = 7e-05, Method: Composition-based stats.
Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 3/106 (2%)
Query: 298 NTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVY 357
E+ + ++ YI+ +S D + S DG + V+
Sbjct: 313 TGEWLAFGSSKLGQLLVYEWQSESYILKQQGHFDSTNSLAYSPDGSRVVTASEDGKIKVW 372
Query: 358 NLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDL 402
+++S ++ + + + V+FA G M D TV +DL
Sbjct: 373 DITSGFCLATF--EEHTSSVTAVQFAKRGQVMFSSSLDGTVRAWDL 416
Score = 36.0 bits (81), Expect = 0.041, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 44/131 (33%), Gaps = 17/131 (12%)
Query: 339 HKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVV 398
H + LLA+ G +Y+L PD + + + V G W+
Sbjct: 269 HPATRLLAVGFTSGEFRLYDL--PDFTLIQQLSMGQNPVNTVSVNQTGEWLA-------- 318
Query: 399 CFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWT 458
F K L Y + +D N +AYS + + + D K K W
Sbjct: 319 -FGSSKLGQLLVYEWQSESYILKQQGHFD----STNSLAYSPDGSRVVTASEDGKIKVW- 372
Query: 459 KDEESALCLQS 469
D S CL +
Sbjct: 373 -DITSGFCLAT 382
>5I2T-A nrPDB
Length = 742
Score = 45.2 bits (105), Expect = 7e-05, Method: Composition-based stats.
Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 3/106 (2%)
Query: 298 NTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVY 357
E+ + ++ YI+ +S D + S DG + V+
Sbjct: 338 TGEWLAFGSSKLGQLLVYEWQSESYILKQQGHFDSTNSLAYSPDGSRVVTASEDGKIKVW 397
Query: 358 NLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDL 402
+++S ++ + + + V+FA G M D TV +DL
Sbjct: 398 DITSGFCLATF--EEHTSSVTAVQFAKRGQVMFSSSLDGTVRAWDL 441
Score = 36.0 bits (81), Expect = 0.041, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 44/131 (33%), Gaps = 17/131 (12%)
Query: 339 HKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVV 398
H + LLA+ G +Y+L PD + + + V G W+
Sbjct: 294 HPATRLLAVGFTSGEFRLYDL--PDFTLIQQLSMGQNPVNTVSVNQTGEWLA-------- 343
Query: 399 CFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWT 458
F K L Y + +D N +AYS + + + D K K W
Sbjct: 344 -FGSSKLGQLLVYEWQSESYILKQQGHFD----STNSLAYSPDGSRVVTASEDGKIKVW- 397
Query: 459 KDEESALCLQS 469
D S CL +
Sbjct: 398 -DITSGFCLAT 407
>5WYK-BB nrPDB
Length = 943
Score = 45.2 bits (105), Expect = 7e-05, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 332 EYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVV 391
E + HKD+ LLA+ DG++ V++L S + +A I ++F G ++
Sbjct: 81 ECTYLEAHKDTDLLAVGYADGVIKVWDLMSKTVLLNF--NGHKAAITLLQFDGTGTRLIS 138
Query: 392 -ECDQTVVCFDLRKDVGTLAY 411
D ++ +DL +VG
Sbjct: 139 GSKDSNIIVWDLVGEVGLYKL 159
>3JAP-g nrPDB
Length = 326
Score = 44.1 bits (102), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 19/154 (12%)
Query: 304 WADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPD 363
W+ N SY ++ +I H+ +V S D L A DG + V+NL
Sbjct: 186 WSLNE-----DSYRIEADFIGHNNYINVVQPS----PDGSLAASAGKDGQIYVWNLK--- 233
Query: 364 QASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGT 423
S+ D + ++ + F+ + +W+ + +DL +V PEF T
Sbjct: 234 HKSAFMNFDAKDEVFALAFSPSRFWLTAATASGIKIYDLENEVLIDEL----KPEFAGYT 289
Query: 424 VTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNW 457
D +A+S + +L D + W
Sbjct: 290 KA---QDPHAVSLAWSADGQTLFAGYTDNVIRVW 320
>6HHQ-h nrPDB
Length = 319
Score = 43.7 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 58/160 (36%), Gaps = 19/160 (11%)
Query: 302 FIWADNRG---TIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYN 358
I A N ++ ++ +I H++ ++ D L+A DG + ++N
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNS----NINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 359 LSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPE 418
L++ + DE + + F+ N YW+ + F L P Y + +
Sbjct: 225 LAAKKAMYTLSAQDE---VFSLAFSPNRYWLAAATATGIKVFSLD--------PQYLVDD 273
Query: 419 FKTGTVTYD-IDDSGKNMIAYSNESNSLTIYKFDKKTKNW 457
+ Y + +A+S + +L D + W
Sbjct: 274 LRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
>2C2V-S nrPDB
Length = 78
Score = 43.3 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 2 LCA-ISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGN-DPITNEPLSIEEIVEIVPSA 57
LC IS ++ R P ++P S +++ +E++++ G+ +P+T PL+ E+++ +
Sbjct: 6 LCGKISFELMREPCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMK 62
>2C2L-A nrPDB
Length = 281
Score = 43.3 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 2 LCA-ISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGN-DPITNEPLSIEEIVEIVPSA 57
LC IS ++ R P ++P S +++ +E++++ G+ +P+T PL+ E+++ +
Sbjct: 209 LCGKISFELMREPCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMK 265
>6CHG-A nrPDB
Length = 312
Score = 42.9 bits (99), Expect = 3e-04, Method: Composition-based stats.
Identities = 52/221 (23%), Positives = 84/221 (38%), Gaps = 32/221 (14%)
Query: 270 DSKTNKVLREIEVDSANEIIY-----MYGH--NEVNTEYFIWADNRGTIGFQSYEDDSQY 322
DSK E IIY + GH ++ Y +N+G I S D+S
Sbjct: 65 DSKCIASGSEDFTVEITHIIYGRIRRLMGHTAPVISICY----NNKGNILCSSSMDESIK 120
Query: 323 IVH----------SAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASS----- 367
H SA SD S + DS +L+ S DG++ +++ S +
Sbjct: 121 EWHVLSGTALKTMSAHSDAVVSIDIPKFDSSILSSGSYDGLIRIFDTESGHCLKTLTYDK 180
Query: 368 -RFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAY--PTY-TIPEFKTG 422
D I VKF+ NG +++V+ D V ++ + + P T + K
Sbjct: 181 DWIAEDGVVPISTVKFSRNGKFLLVKSLDNVVKLWEYTRGTVVRTFLWPHQETKAKLKYN 240
Query: 423 TVTYDIDDSGKNMIAYS-NESNSLTIYKFDKKTKNWTKDEE 462
I GK+ + S N+S S+ ++ K DE+
Sbjct: 241 CGLELIYPQGKDPLVISGNDSGSMCVWNVYSKNLVQKIDEK 281
>2F42-A nrPDB
Length = 179
Score = 42.9 bits (99), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 2 LCA-ISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGN-DPITNEPLSIEEIVEIVPSA 57
LC IS ++ R P ++P S +++ +E++++ G+ DP+T PL+ ++++ +
Sbjct: 107 LCGKISFELMREPCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMK 163
>2H9P-A nrPDB
Length = 329
Score = 42.1 bits (97), Expect = 6e-04, Method: Composition-based stats.
Identities = 38/222 (17%), Positives = 71/222 (31%), Gaps = 28/222 (12%)
Query: 250 SRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRG 309
S G N + K N L+ + + N E+ +
Sbjct: 8 SSGRENLYFQGTQSKPTPV---KPNYALKFTLAGHTKAVSSVKFSP--NGEWLASSSADK 62
Query: 310 TI-GFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSR 368
I + +Y+ + + K S DS LL S D L ++++SS +
Sbjct: 63 LIKIWGAYDGKFEKTISGHKLG--ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 120
Query: 369 FPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYD 427
+ F +V D++V +D++ P ++ P V ++
Sbjct: 121 --KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP---VSAVHFN 175
Query: 428 IDDSGKNMIAYSNESNSLTIYKFDKKTKNWTKDEESALCLQS 469
D S + S+ +D + W D S CL++
Sbjct: 176 RDGS----LIVSSS--------YDGLCRIW--DTASGQCLKT 203
>2OXQ-C nrPDB
Length = 80
Score = 41.8 bits (96), Expect = 7e-04, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 2 LCA-ISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGN-DPITNEPLSIEEIVEIVPSA 57
LC IS ++ P ++P S +++ +E++++ G+ DP+T PL+ ++++ +
Sbjct: 14 LCGKISFELMAEPCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMK 70
>5WLC-LN nrPDB
Length = 776
Score = 41.0 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 5/85 (5%)
Query: 326 SAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEE----AKIKEVK 381
+ K D S+ L D +L + P + ++ +D + K VK
Sbjct: 421 TLKDDQNISTCSLSPDGQVLVVGRPSTTKVFHLQPVGNKL-KVTKLDNDLLLRTSTKLVK 479
Query: 382 FADNGYWMVVECDQTVVCFDLRKDV 406
F DN ++ C+ V DL +
Sbjct: 480 FIDNSKIVICSCEDDVFIVDLESEE 504
>6EMK-B nrPDB
Length = 303
Score = 40.6 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 30/201 (14%), Positives = 73/201 (36%), Gaps = 21/201 (10%)
Query: 274 NKVLREIEVDSANEIIYMYGHN--------EVNTEYFIWADNRGTIGFQSYEDDSQYIVH 325
N L +I + N + GH + + + + + GTI + ++ S I
Sbjct: 54 NVRLYDIRTTNPNPVASFEGHRGNVTSVSFQQDNRWMVTSSEDGTI--KVWDVRSPSIPR 111
Query: 326 SAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADN 385
+ K + + V+H + L DG + +++L +Q + + +++ ++ + A +
Sbjct: 112 NYKHNAPVNEVVIHPNQGELISCDRDGNIRIWDLGE-NQCTHQLTPEDDTSLQSLSMASD 170
Query: 386 GYWM-VVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNS 444
G + +++ P +T + + I S++
Sbjct: 171 GSMLAAANTKGNCYVWEM---------PNHTDASHLKPVTKFRAHSTYITRILLSSDVKH 221
Query: 445 LTIYKFDKKTKNWTKDEESAL 465
L D + W+ D++ L
Sbjct: 222 LATCSADHTARVWSIDDDFKL 242
>5M25-A nrPDB
Length = 434
Score = 40.6 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 32/174 (18%), Positives = 61/174 (35%), Gaps = 23/174 (13%)
Query: 298 NTEYFIWADNRGTI-GFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV 356
N E+ + I + +Y+ + + K S DS LL S D L +
Sbjct: 156 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--ISDVAWSSDSNLLVSASDDKTLKI 213
Query: 357 YNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYT 415
+++SS + + F +V D++V +D++ P ++
Sbjct: 214 WDVSSGKCLKTL--KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 271
Query: 416 IPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTKDEESALCLQS 469
P V ++ D S + S+ +D + W D S CL++
Sbjct: 272 DP---VSAVHFNRDGS----LIVSSS--------YDGLCRIW--DTASGQCLKT 308
Score = 37.9 bits (86), Expect = 0.011, Method: Composition-based stats.
Identities = 26/109 (23%), Positives = 40/109 (36%), Gaps = 18/109 (16%)
Query: 362 PDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFK 420
P+ A + VKF+ NG W+ D+ + + TI K
Sbjct: 133 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTISGHK 187
Query: 421 TGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTKDEESALCLQS 469
G + +A+S++SN L DK K W D S CL++
Sbjct: 188 LGI----------SDVAWSSDSNLLVSASDDKTLKIW--DVSSGKCLKT 224
>5MWJ-A nrPDB
Length = 337
Score = 39.1 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 28/151 (18%), Positives = 45/151 (29%), Gaps = 28/151 (18%)
Query: 330 DVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPD-----QASSRFPVDEEAKIKEVKFAD 384
D S L D L + L +++L++P + +S P I D
Sbjct: 97 DNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP----D 152
Query: 385 NGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNS 444
+ D + +DL + +T G + I SN+
Sbjct: 153 SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT---------------DGASCIDISNDGTK 197
Query: 445 LTIYKFDKKTKNWTKDEESALCLQSDTADFT 475
L D ++W E L DFT
Sbjct: 198 LWTGGLDNTVRSWDLREGRQL----QQHDFT 224
>3CRC-A nrPDB
Length = 265
Score = 38.7 bits (88), Expect = 0.006, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 55/136 (40%), Gaps = 9/136 (6%)
Query: 41 TNEPLSIEEIVEIVPSAQQASLTESTNSATLKANYSIPNLLTS--LQNEWDAIMLENFKL 98
++ S E + + ++ +SA S+P L+ + +Q + + L
Sbjct: 105 SSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTL 164
Query: 99 RSTLDSLTKKLSTVMYERDAAKLVAAQLLMEKNE-------DSKDLPKSSQQAVAITREE 151
+D + +++ VMYE A + A+L E + ++ L ++ A+ E+
Sbjct: 165 GPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEK 224
Query: 152 FLQGLLQSSRDFVARG 167
F + + R ARG
Sbjct: 225 FERRFREVERIVAARG 240
>4WZ3-B nrPDB
Length = 215
Score = 38.3 bits (87), Expect = 0.007, Method: Composition-based stats.
Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
Query: 1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEI--VPSAQ 58
+ C I + PV++P ++ KS + ++++ DP + +PL+ +++ +
Sbjct: 35 LTCPIDSGFLKDPVITP-EGFVYNKSSILKWLETKKEDPQSRKPLTAKDLQPFPELLIIV 93
Query: 59 QASLTESTNSATLKANYSIPNLLTSLQNEWDAI 91
+ TN LK + + Q E+ I
Sbjct: 94 NRFVETQTNYEKLKNRLVQNARVAARQKEYTEI 126
>6GMH-W nrPDB
Length = 305
Score = 37.1 bits (84), Expect = 0.016, Method: Composition-based stats.
Identities = 16/112 (14%), Positives = 42/112 (37%), Gaps = 6/112 (5%)
Query: 298 NTEYFIWADNRGTI-GFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV 356
+++Y + G + F +Y + S D LA + DGI+++
Sbjct: 117 DSQYLATGTHVGKVNIFGVESGKKEYSLD--TRGKFILSIAYSPDGKYLASGAIDGIINI 174
Query: 357 YNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQT-VVCFDLRKDVG 407
+++++ + I+ + F+ + +V D + +D++
Sbjct: 175 FDIATGKLLHTL--EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL 224
>4WZ0-A nrPDB
Length = 109
Score = 35.6 bits (80), Expect = 0.055, Method: Composition-based stats.
Identities = 11/52 (21%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVE 52
+ C I + PV++P ++ KS + ++++ DP + +PL+ +++
Sbjct: 27 LTCPIDSGFLKDPVITP-EGFVYNKSSILKWLETKKEDPQSRKPLTAKDLQP 77
>3ACP-A nrPDB
Length = 417
Score = 35.2 bits (79), Expect = 0.062, Method: Composition-based stats.
Identities = 57/326 (17%), Positives = 115/326 (35%), Gaps = 28/326 (8%)
Query: 132 EDSKDLPKSSQQAVAITREEFLQGLLQSSRDFVARGKLKAPKWPILKNLELLQAQNYSRN 191
+ SK L ++ AV + + + +L ++ + K+ + + + ++ ++
Sbjct: 86 DGSKMLKRADYTAVDTAKLQMRRFILGTTEGDI---KVLDSNFNLQREIDQAHVSEITK- 141
Query: 192 IKTFPYKELNKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAIISR 251
+K FP E S D + + +DG+ T + T+T I + ++S
Sbjct: 142 LKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID-----RGRNVLSA 196
Query: 252 GPCNRLLLLYPGNQITI--------LDSKTNKVLREIEVDSANEIIYMYGHNEVN----T 299
+ L G TI N + + D I N +
Sbjct: 197 SLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG 256
Query: 300 EYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLH-KDSLLLALYSPDGILDVYN 358
+Y I G I + Q I +K +S + ++ + +G+L ++
Sbjct: 257 KYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWD 316
Query: 359 LSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPE 418
L SP+ F ++E I V FA ++ D ++ + D+ + E
Sbjct: 317 LRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSI-----KLDIISDPESERPAIE 371
Query: 419 FKTGTVTYDIDDSGKNMIAYSNESNS 444
F+T T DD + Y ++ S
Sbjct: 372 FETPTFLVSNDDE-VSQFCYVSDDES 396
>4V7E-Bg nrPDB
Length = 380
Score = 34.4 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 25/167 (14%), Positives = 53/167 (31%), Gaps = 20/167 (11%)
Query: 291 MYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLH----------K 340
+ GH+ Y + + D + IV +A + + + LH
Sbjct: 62 LQGHS--GKVYSLDWTPEKNWIVSA-SQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAP 118
Query: 341 DSLLLALYSPDGILDVYNLSS-----PDQASSRFPVDEEAKIKEVKFADNGYWMVVE--C 393
+ +A D ++NLSS + SR + ++ + ++
Sbjct: 119 NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSG 178
Query: 394 DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSN 440
DQT V +D+ + + ++ I+ NM +
Sbjct: 179 DQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGS 225
>2QJ0-A nrPDB
Length = 982
Score = 34.4 bits (77), Expect = 0.12, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 11 RRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVE 52
+ PV+ P S+ ++S ++ ++ DP PL +E++
Sbjct: 916 KDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTP 957
>4E5Z-B nrPDB
Length = 436
Score = 34.4 bits (77), Expect = 0.12, Method: Composition-based stats.
Identities = 31/166 (18%), Positives = 64/166 (38%), Gaps = 7/166 (4%)
Query: 255 NRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQ 314
+ + + G I + + I+ A I N +NT F + GT Q
Sbjct: 133 STVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192
Query: 315 SYEDDSQYIVHSA-KSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDE 373
++ + + S+ ++ + S + S ++ G + + N+ + + R
Sbjct: 193 DFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRM---H 249
Query: 374 EAKIKEVKFADNGYWMVVEC--DQTVVCFDLRKDVGTLAYPTYTIP 417
+ K+ V W + DQTV +DLR+ G ++ Y++P
Sbjct: 250 KKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASF-LYSLP 294
>5K19-A nrPDB
Length = 569
Score = 33.3 bits (74), Expect = 0.25, Method: Composition-based stats.
Identities = 22/147 (14%), Positives = 47/147 (31%), Gaps = 29/147 (19%)
Query: 244 EHPAIISRGPCNRLLLLYPGNQITILD---SKTNKVLREIEVDSANEIIYMYGHNEVNTE 300
+ + + LL+ + Q+ ++D +T+K+ E + + + + +
Sbjct: 105 DFNHLTATAESVSLLVGFSAGQVQLIDPIKKETSKLFNEERLIDKSRVTCVKWVPGSESL 164
Query: 301 YFIWADNRGTIGF-------------QSYEDDSQYIVHSAKSDV-------------EYS 334
+ + + + Q + + VH+ KS +
Sbjct: 165 FLVAHSSGNMYLYNVEHTCGTTAPHYQLLKQGESFAVHTCKSKSTRNPLLKWTVGEGALN 224
Query: 335 SGVLHKDSLLLALYSPDGILDVYNLSS 361
D LA S DG L V+N S
Sbjct: 225 EFAFSPDGKFLACVSQDGFLRVFNFDS 251
>5K0Y-T nrPDB
Length = 329
Score = 33.3 bits (74), Expect = 0.27, Method: Composition-based stats.
Identities = 38/212 (17%), Positives = 75/212 (35%), Gaps = 16/212 (7%)
Query: 256 RLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQS 315
RL G Q+ +L KTN +R D II ++ + F+ F
Sbjct: 77 RLWDCETGKQLALL--KTNSAVRTCGFDFGGNIIMFSTDKQMGYQCFVS-------FFDL 127
Query: 316 YE----DDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV 371
+ D+++ + +D + +S V + G L+ Y+ S + +
Sbjct: 128 RDPSQIDNNEPYMKIPCNDSKITSAVWGPLGECIIAGHESGELNQYSAKSGEVLVNV--K 185
Query: 372 DEEAKIKEVKFA-DNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD 430
+ +I +++ + + ++ D T FD + T E + Y+
Sbjct: 186 EHSRQINDIQLSREMTMFVTASKDNTAKLFDSTTLEHQKTFRTEPPRELAALSPNYEHVV 245
Query: 431 SGKNMIAYSNESNSLTIYKFDKKTKNWTKDEE 462
G A + S I KF+ + + +EE
Sbjct: 246 VGGGQEAMDVTTTSTRIGKFEARFFHLAFEEE 277
>3H15-A nrPDB
Length = 198
Score = 32.5 bits (72), Expect = 0.39, Method: Composition-based stats.
Identities = 34/174 (19%), Positives = 55/174 (31%), Gaps = 7/174 (4%)
Query: 138 PKSSQQAVAITREEFLQGLLQSSRDFVARGKLKAPKWPILKNLELLQAQNYSRNIKTFPY 197
P+ S + L ++ +A KL+ W + S N KTF
Sbjct: 20 PRVSSSEMERKMNGRKLIRLAQLQNKIATEKLEEEDWVTFGVIVKKITPQSSNNGKTFSI 79
Query: 198 KELNKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPN---PRTGGEHPAIISRGPC 254
LN DK++ + D T+ + N P+ G + + P
Sbjct: 80 WRLNDLKDLDKYISLFLF-GDVHKEHWKTDQGTVIGLLNANPMKPKEGTDEVCLSVDNPQ 138
Query: 255 NRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNR 308
LL+ + T K N V+ N+ Y H V +Y + R
Sbjct: 139 KVLLMGDAVDLGTCKARKKNGDPCTQMVN-LNDCEYCQYH--VQAQYKKVSSKR 189
>3DW8-B nrPDB
Length = 447
Score = 32.5 bits (72), Expect = 0.40, Method: Composition-based stats.
Identities = 27/153 (17%), Positives = 59/153 (38%), Gaps = 29/153 (18%)
Query: 279 EIEVDSANEIIYMYGHN------EVNTEY--FIWADNRGTIGFQSYEDDSQYIVHSAKSD 330
++ V+++ I+ H +N++Y ++ AD+ + D + + K
Sbjct: 161 DLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPA 220
Query: 331 ------VEYSSGVLHKDS-LLLALYSPDGILDVYNLSSP---DQASSRF--PVDEE---- 374
++ H +S S G + + ++ + D+ S F P D
Sbjct: 221 NMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSF 280
Query: 375 -----AKIKEVKFADNGYWMVVECDQTVVCFDL 402
+ I +VKF+ +G +M+ +V +DL
Sbjct: 281 FSEIISSISDVKFSHSGRYMMTRDYLSVKVWDL 313
>1WGM-A nrPDB
Length = 98
Score = 31.7 bits (70), Expect = 0.81, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 12 RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVE 52
PV+ P SR ++S + +++ DP PL++++I
Sbjct: 34 DPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRP 74
>3MKQ-A nrPDB
Length = 814
Score = 31.4 bits (69), Expect = 0.92, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 288 IIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSG---VLHKDSLL 344
+ Y+ + + Y I A + TI Y+ S A + S+ V H +
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV----ATLEGHMSNVSFAVFHPTLPI 242
Query: 345 LALYSPDGILDVYNLSS 361
+ S DG L ++N S+
Sbjct: 243 IISGSEDGTLKIWNSST 259
>2YNP-A nrPDB
Length = 604
Score = 31.4 bits (69), Expect = 0.92, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 288 IIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSG---VLHKDSLL 344
+ Y+ + + Y I A + TI Y+ S A + S+ V H +
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV----ATLEGHMSNVSFAVFHPTLPI 242
Query: 345 LALYSPDGILDVYNLSS 361
+ S DG L ++N S+
Sbjct: 243 IISGSEDGTLKIWNSST 259
>1J37-A nrPDB
Length = 607
Score = 31.4 bits (69), Expect = 0.95, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 9/110 (8%)
Query: 90 AIMLENFKLRSTLDSLTKKLSTVM-YERDAAKLVAAQLLME----KNEDSKDLPKSSQQA 144
A++ E + + L++L K+L+ E +AA + + E KNE S +L K ++
Sbjct: 4 ALVKEEIQAKEYLENLNKELAKRTNVETEAAWAYRSAITDENEKKKNEISAELAKFMKEV 63
Query: 145 VAITREEFLQGLLQS---SRDFVARGKLKAPKWPILKNLELLQAQNYSRN 191
+ T +F QS R F A KL P ELL + +
Sbjct: 64 ASDT-TKFQWRSYQSEDLKRQFKALTKLGYAALPEDDYAELLDTLSAMES 112
>6EOJ-D nrPDB
Length = 470
Score = 31.4 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 26/67 (38%)
Query: 339 HKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVV 398
H + L+A S D ++ +++ S + SS + M + D++
Sbjct: 228 HPEMGLIASASKDNLVKLWDPRSGNCISSILKFKHTVLKTRFQPTKGNLLMAISKDKSCR 287
Query: 399 CFDLRKD 405
FD+R
Sbjct: 288 VFDIRYS 294
>2P9P-C nrPDB
Length = 372
Score = 31.0 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 52/151 (34%), Gaps = 29/151 (19%)
Query: 304 WADNRGTIGFQS----------YEDDSQYIVHSAKSDVEYSSGVL--HKDSLLLALYSPD 351
WA N S +++ ++ K + + L H +S+LLA S D
Sbjct: 104 WAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD 163
Query: 352 GILDVY--------NLSSPDQASSRFPVDE---EAK-----IKEVKFADNGYWMV-VECD 394
++ +P S+ P E E+ + V F+ NG + V D
Sbjct: 164 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD 223
Query: 395 QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVT 425
TV D K + + T+P +T
Sbjct: 224 STVCLADADKKMAVATLASETLPLLAVTFIT 254
>3PXI-A nrPDB
Length = 758
Score = 30.6 bits (67), Expect = 1.5, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 91 IMLENFKLRSTLDSLTKKLSTVMYERDAAKLVAAQLLMEKNEDSKDLPKSSQQAVAITRE 150
+ L +F L L +KL V E+DAA EK +D + ++ V T++
Sbjct: 385 VRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQE---FEKAASLRDTEQRLREQVEDTKK 441
Query: 151 EFLQ 154
+ +
Sbjct: 442 SWKE 445
>3PXG-A nrPDB
Length = 468
Score = 30.6 bits (67), Expect = 1.5, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 91 IMLENFKLRSTLDSLTKKLSTVMYERDAAKLVAAQLLMEKNEDSKDLPKSSQQAVAITRE 150
+ L +F L L +KL V E+DAA EK +D + ++ V T++
Sbjct: 385 VRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQE---FEKAASLRDTEQRLREQVEDTKK 441
Query: 151 EFLQ 154
+ +
Sbjct: 442 SWKE 445
>3J3U-A nrPDB
Length = 810
Score = 30.6 bits (67), Expect = 1.5, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 91 IMLENFKLRSTLDSLTKKLSTVMYERDAAKLVAAQLLMEKNEDSKDLPKSSQQAVAITRE 150
+ L +F L L +KL V E+DAA EK +D + ++ V T++
Sbjct: 402 VRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQE---FEKAASLRDTEQRLREQVEDTKK 458
Query: 151 EFLQ 154
+ +
Sbjct: 459 SWKE 462
>3HTK-C nrPDB
Length = 267
Score = 30.2 bits (66), Expect = 1.9, Method: Composition-based stats.
Identities = 9/46 (19%), Positives = 20/46 (43%)
Query: 1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS 46
+ C I+ K P++S K +F++ ++ Y++ S
Sbjct: 182 LTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACS 227
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.304 0.119 0.307
Lambda K H
0.267 0.0363 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,201,206
Number of Sequences: 36641
Number of extensions: 582434
Number of successful extensions: 1436
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 1354
Number of HSP's gapped (non-prelim): 88
length of query: 503
length of database: 10,336,785
effective HSP length: 101
effective length of query: 402
effective length of database: 6,636,044
effective search space: 2667689688
effective search space used: 2667689688
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.5 bits)
S2: 61 (28.3 bits)