BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P32320 (146 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 1MQ0-A nrPDB 285 4e-78 2FR6-A nrPDB 261 1e-70 2D30-A nrPDB 130 3e-31 1UX0-A nrPDB 125 6e-30 1R5T-A nrPDB 101 1e-22 3DMO-A nrPDB 100 2e-22 3MPZ-A nrPDB 88 1e-18 3R2N-A nrPDB 82 1e-16 3IJF-X nrPDB 80 3e-16 4EG2-A nrPDB 67 3e-12 2Z3H-A nrPDB 54 2e-08 1CTU-A nrPDB 54 3e-08 3OJ6-A nrPDB 47 3e-06 5D2Y-A nrPDB 28 1.1 3B8F-A nrPDB 28 1.2 5XGV-A nrPDB 27 2.7 3H0W-A nrPDB 27 4.4 >1MQ0-A nrPDB Length = 140 Score = 285 bits (730), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 135/137 (98%), Positives = 137/137 (100%) Query: 10 LKPECVQQLLVCSQEAKKSAYCPYSHFPVGAALLTQEGRIFKGCNIENACYPLGICAERT 69 +KPECVQQLLVCSQEAK+SAYCPYSHFPVGAALLTQEGRIFKGCNIENACYPLGICAERT Sbjct: 4 MKPECVQQLLVCSQEAKQSAYCPYSHFPVGAALLTQEGRIFKGCNIENACYPLGICAERT 63 Query: 70 AIQKAVSEGYKDFRAIAIASDMQDDFISPCGACRQVMREFGTNWPVYMTKPDGTYIVMTV 129 AIQKAVSEGYKDFRAIAIASDMQDDFISPCGACRQVMREFGTNWPVYMTKPDGTYIVMTV Sbjct: 64 AIQKAVSEGYKDFRAIAIASDMQDDFISPCGACRQVMREFGTNWPVYMTKPDGTYIVMTV 123 Query: 130 QELLPSSFGPEDLQKTQ 146 QELLPSSFGPEDLQKTQ Sbjct: 124 QELLPSSFGPEDLQKTQ 140 >2FR6-A nrPDB Length = 146 Score = 261 bits (666), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 119/146 (81%), Positives = 137/146 (93%) Query: 1 MAQKRPACTLKPECVQQLLVCSQEAKKSAYCPYSHFPVGAALLTQEGRIFKGCNIENACY 60 MAQ+RP+C ++PE VQ+LL+ S+EAKKSAYCPYS FPVGAALLT +GRIF GCNIENACY Sbjct: 1 MAQERPSCAVEPEHVQRLLLSSREAKKSAYCPYSRFPVGAALLTGDGRIFSGCNIENACY 60 Query: 61 PLGICAERTAIQKAVSEGYKDFRAIAIASDMQDDFISPCGACRQVMREFGTNWPVYMTKP 120 PLG+CAERTAIQKA+SEGYKDFRAIAI+SD+Q++FISPCGACRQVMREFGT+W VYMTKP Sbjct: 61 PLGVCAERTAIQKAISEGYKDFRAIAISSDLQEEFISPCGACRQVMREFGTDWAVYMTKP 120 Query: 121 DGTYIVMTVQELLPSSFGPEDLQKTQ 146 DGT++V TVQELLP+SFGPEDLQK Q Sbjct: 121 DGTFVVRTVQELLPASFGPEDLQKIQ 146 >2D30-A nrPDB Length = 141 Score = 130 bits (326), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 70/130 (53%), Positives = 90/130 (69%), Gaps = 2/130 (1%) Query: 16 QQLLVCSQEAKKSAYCPYSHFPVGAALLTQEGRIFKGCNIENACYPLGICAERTAIQKAV 75 +QL+ + EA+K AY PYS F VGAALLTQ+G++++GCN+ENA Y L CAERTA+ KAV Sbjct: 13 KQLIQEAIEARKQAYVPYSKFQVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAV 72 Query: 76 SEGYKDFRAIAIASDMQDDFISPCGACRQVMREF-GTNWPVYMTKPDGTYIVMTVQELLP 134 SEG K+F AIAI +D + + PCGACRQVM E + VY++ G TV ELLP Sbjct: 73 SEGDKEFVAIAIVADTKRP-VPPCGACRQVMVELCKQDTKVYLSNLHGDVQETTVGELLP 131 Query: 135 SSFGPEDLQK 144 +F EDL + Sbjct: 132 GAFLAEDLHE 141 >1UX0-A nrPDB Length = 136 Score = 125 bits (315), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 65/129 (50%), Positives = 90/129 (69%), Gaps = 2/129 (1%) Query: 16 QQLLVCSQEAKKSAYCPYSHFPVGAALLTQEGRIFKGCNIENACYPLGICAERTAIQKAV 75 Q+L+ + +A+ AY PYS F VGAALLT++G++++GCNIENA Y + CAE+TA+ KAV Sbjct: 4 QELITEALKARDMAYAPYSKFQVGAALLTKDGKVYRGCNIENAAYSMCNCAEQTALFKAV 63 Query: 76 SEGYKDFRAIAIASDMQDDFISPCGACRQVMREFGT-NWPVYMTKPDGTYIVMTVQELLP 134 SEG +F+ +A+A+D +SPCGACRQV+ E T + V +T G MTV+ELLP Sbjct: 64 SEGDTEFQMLAVAADTPGP-VSPCGACRQVISELCTKDVIVVLTNLQGQIKEMTVEELLP 122 Query: 135 SSFGPEDLQ 143 +F EDL Sbjct: 123 GAFSSEDLH 131 >1R5T-A nrPDB Length = 142 Score = 101 bits (251), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 51/118 (43%), Positives = 73/118 (61%), Gaps = 3/118 (2%) Query: 29 AYCPYSHFPVGAALLTQEGRIFKGCNIENACYPLGICAERTAIQKAVSEGYKD-FRAIAI 87 +Y PYSHF VG ++LT IF G N+ENA Y ICAER+A+ + + G++ ++ + I Sbjct: 25 SYSPYSHFRVGCSILTNNDVIFTGANVENASYSNCICAERSAMIQVLMAGHRSGWKCMVI 84 Query: 88 ASDMQDDFISPCGACRQVMREFGT-NWPVYMTKPDGTYI-VMTVQELLPSSFGPEDLQ 143 D +D +SPCG CRQ + EF ++P+ M G+ VMT+ ELLP +FGP L Sbjct: 85 CGDSEDQCVSPCGVCRQFINEFVVKDFPIVMLNSTGSRSKVMTMGELLPMAFGPSHLN 142 >3DMO-A nrPDB Length = 138 Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 53/109 (48%), Positives = 71/109 (65%), Gaps = 4/109 (3%) Query: 32 PYSHFPVGAALLTQEGRIFKGCNIENACYPLGICAERTAIQKAVSEGYK--DFRAIAIAS 89 PYS+F VGAAL+T +G++F GCN+ENA Y L CAERTA+ A++ GY+ +F AIA+ Sbjct: 28 PYSNFKVGAALVTNDGKVFHGCNVENASYGLCNCAERTALFSALAAGYRPGEFAAIAVVG 87 Query: 90 DMQDDFISPCGACRQVMREFGT-NWPVYMTKPDGTYIVMTVQELLPSSF 137 + I+PCGACRQVM E G V +T G V + +LLP +F Sbjct: 88 ETHGP-IAPCGACRQVMIELGKPTLEVVLTNMQGDVRVTSAGDLLPDAF 135 >3MPZ-A nrPDB Length = 150 Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 49/121 (40%), Positives = 65/121 (53%), Gaps = 5/121 (4%) Query: 24 EAKKSAYCPYSHFPVGAALLTQEGRIFKGCNIENACYPLGICAERTAIQKAVSEGYKDFR 83 E + AY PYS FPVGAA L +GR GCN+EN Y LG+CAE + S G Sbjct: 34 EVSRHAYAPYSGFPVGAAALVDDGRTVTGCNVENVSYGLGLCAECAVVCALHSGGGGRLV 93 Query: 84 AIAIASDMQDDFISPCGACRQVMREFGTNWPVYMTKPDGTYIVMTVQELLPSSFGPEDLQ 143 A++ + PCG CRQV+ E G P + D + ++ELLP +FGP+DL Sbjct: 94 ALSCVGP-DGGVLMPCGRCRQVLLEHGG--PELLI--DHAHGPRPLRELLPDAFGPDDLG 148 Query: 144 K 144 + Sbjct: 149 R 149 >3R2N-A nrPDB Length = 138 Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 46/117 (39%), Positives = 65/117 (55%), Gaps = 5/117 (4%) Query: 25 AKKSAYCPYSHFPVGAALLTQEGRIFKGCNIENACYPLGICAERTAIQKAVSEGYKDFRA 84 A+ ++Y PYS+FPVG A +GR+ G N+ENA Y L +CAE + I + G A Sbjct: 20 ARANSYAPYSNFPVGVAGFVNDGRLITGVNVENASYGLALCAECSMISALYATGGGRLVA 79 Query: 85 IAIASDMQDDFISPCGACRQVMREFGTNWPVYMTKPDGTYIVMTVQELLPSSFGPED 141 + D D + PCG CRQ++ E G MT P G V T+ +LLP +F P++ Sbjct: 80 V-YCVDGNGDSLMPCGRCRQLLYEHGGPELKIMT-PKG---VQTMAQLLPQAFNPQE 131 >3IJF-X nrPDB Length = 133 Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 46/127 (36%), Positives = 66/127 (51%), Gaps = 9/127 (7%) Query: 22 SQEAKKSAYCPYSHFPVGAALLTQEGRIFKGCNIENACYPLGICAERTAIQKAVSEGYKD 81 + +A AY PYS F VGAA L +GR+ GCN+EN Y L +CAE + S G Sbjct: 13 ATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVVCALHSTGGGR 72 Query: 82 FRAIAIASDMQDDFISPCGACRQVMREFGTNWPV--YMTKPDGTYIVMTVQELLPSSFGP 139 A+A D + PCG CRQV+ E G + + + +P + +LLP +FG Sbjct: 73 LLALACV-DGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRP------RRLGDLLPDAFGL 125 Query: 140 EDLQKTQ 146 +DL + + Sbjct: 126 DDLPRER 132 >4EG2-A nrPDB Length = 298 Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 64/149 (42%), Gaps = 23/149 (15%) Query: 8 CTLKPECVQQLLVCSQE------------AKKSAYCPYSHFPVGAALLTQEGRIFKGCNI 55 T E QQLL S A +Y P S F VGA + GR++ G N+ Sbjct: 34 ATFSAEQYQQLLTLSGLEDADLRVALLPIAAAYSYAPISEFYVGAIVRGISGRLYLGANM 93 Query: 56 ENACYPLG--ICAERTAIQKAVSEGYKDFRAIAIASDMQDDFISPCGACRQVMREFGTNW 113 E LG + AE+ AI A +G K I I SPCG CRQ M E T Sbjct: 94 EFTGAQLGQTVHAEQCAISHAWMKGEKGVADITIN-------FSPCGHCRQFMNELTTAS 146 Query: 114 PVYMTKPDGTYIVMTVQELLPSSFGPEDL 142 + + P T+QE LP SFGP DL Sbjct: 147 SLKIQLPKRA--AKTLQEYLPESFGPADL 173 Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust. Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 6/77 (7%) Query: 13 ECVQQLLVCSQEAKKSAYCPYSHFPVGAALLTQEGRIFKGCNIENACYPLGICAERTAIQ 72 E +QQ L A ++ PY+ G AL + G I+ G ENA + + + A+ Sbjct: 194 ELIQQAL----RAMNISHSPYTQNFSGVALKMRSGAIYLGAYAENAAFNPSLPPLQVALA 249 Query: 73 KA--VSEGYKDFRAIAI 87 +A + E ++D A A+ Sbjct: 250 QAMMMGESFEDIEAAAL 266 >2Z3H-A nrPDB Length = 130 Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 2/102 (1%) Query: 36 FPVGAALLTQEGRIFKGCNIENACYPLGICAERTAIQKAVSEGYKDFRAIAIASDMQDDF 95 + V +A L+ +GRIF G N+ + + G CAE + A + + I + Sbjct: 27 YSVASAALSSDGRIFTGVNVYH--FTGGPCAELVVLGTAAAAAAGNLTCIVAIGNENRGI 84 Query: 96 ISPCGACRQVMREFGTNWPVYMTKPDGTYIVMTVQELLPSSF 137 +SPCG CRQV+ + + DG + ++ELLPS + Sbjct: 85 LSPCGRCRQVLLDLHPGIKAIVKDSDGQPTAVGIRELLPSGY 126 >1CTU-A nrPDB Length = 294 Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 11/115 (9%) Query: 31 CPYSHFPVGAALLTQEGRIFKGCNIE--NACYPLGICAERTAIQKAVSEGYKDFRAIAIA 88 P S+F VGA G + G N+E A + AE++AI A G K AI + Sbjct: 66 TPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITVN 125 Query: 89 SDMQDDFISPCGACRQVMREFGTNWPVYMTKPDGTYIVMTVQELLPSSFGPEDLQ 143 +PCG CRQ M E + + + P +++ LP +FGP+DL+ Sbjct: 126 -------YTPCGHCRQFMNELNSGLDLRIHLPGRE--AHALRDYLPDAFGPKDLE 171 Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust. Identities = 15/32 (46%), Positives = 20/32 (62%) Query: 29 AYCPYSHFPVGAALLTQEGRIFKGCNIENACY 60 ++ PYS P G AL ++GRIF G ENA + Sbjct: 202 SHMPYSKSPSGVALECKDGRIFSGSYAENAAF 233 >3OJ6-A nrPDB Length = 158 Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 4/107 (3%) Query: 32 PYSHF-PVGAALLTQEGRIFKGCNIENACYPLGICAERTAIQKAVSEGYKDFRAIAIASD 90 P S F V +A ++ +GR+F G N+ + + G CAE + A + G I ++ Sbjct: 46 PVSDFYSVASAAISDDGRVFSGVNVYH--FNGGPCAELVVLGVAAAAGATKLTHIVAIAN 103 Query: 91 MQDDFISPCGACRQVMREFGTNWPVYMTKPDGTYIVMTVQELLPSSF 137 +SPCG CRQV+ + + +G +V V+ELLPS + Sbjct: 104 EGRGILSPCGRCRQVLADLHPGIKAIVIGKEGPKMV-AVEELLPSIY 149 >5D2Y-A nrPDB Length = 264 Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust. Identities = 10/20 (50%), Positives = 15/20 (75%) Query: 38 VGAALLTQEGRIFKGCNIEN 57 + AAL+ ++GR+ KG N EN Sbjct: 7 IDAALIMKDGRVVKGSNFEN 26 >3B8F-A nrPDB Length = 142 Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust. Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 7/104 (6%) Query: 39 GAALLTQEGRIFKGC--NIENACYPLGICAERTAIQKAVSEGYKDFRAIAIASDMQDD-- 94 AA+ ++G I+ ++ NA L C E AI +A K +I +A + + Sbjct: 26 AAAIRVEDGTIYTSVAPDVINASTEL--CMETGAILEAHKFQKKVTHSICLARENEHSEL 83 Query: 95 -FISPCGACRQVMREFGTNWPVYMTKPDGTYIVMTVQELLPSSF 137 +SPCG C++ + +G +T I ++EL P + Sbjct: 84 KVLSPCGVCQERLFYWGPEVQCAITNAKQDIIFKPLKELQPYHW 127 >5XGV-A nrPDB Length = 462 Score = 27.3 bits (59), Expect = 2.7, Method: Composition-based stats. Identities = 14/36 (38%), Positives = 21/36 (58%) Query: 45 QEGRIFKGCNIENACYPLGICAERTAIQKAVSEGYK 80 +EGRI + + +PLG A T I+ AV+ G+K Sbjct: 265 REGRILLAGDAAHTLFPLGGQALGTGIEDAVNLGWK 300 >3H0W-A nrPDB Length = 266 Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust. Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Query: 96 ISPCGACRQVMREFGTNWPVYMT-KPDGTYI 125 +PCG M+ GT W +++T +P+ +Y+ Sbjct: 155 FNPCGYSMNGMKSDGTYWTIHITPEPEFSYV 185 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 2FR6-A nrPDB 216 3e-57 1MQ0-A nrPDB 209 4e-55 2D30-A nrPDB 166 2e-42 1UX0-A nrPDB 164 1e-41 3IJF-X nrPDB 154 2e-38 3MPZ-A nrPDB 152 4e-38 1R5T-A nrPDB 150 2e-37 3R2N-A nrPDB 143 2e-35 4EG2-A nrPDB 142 4e-35 3DMO-A nrPDB 135 5e-33 1CTU-A nrPDB 126 3e-30 2Z3H-A nrPDB 120 3e-28 3OJ6-A nrPDB 107 2e-24 Sequences not found previously or not previously below threshold: 3B8F-A nrPDB 48 2e-06 2HXV-A nrPDB 31 0.17 5D2Y-A nrPDB 27 2.2 3VML-A nrPDB 27 2.5 3VMK-A nrPDB 27 2.8 4QHR-A nrPDB 27 3.3 3FV3-A nrPDB 27 3.4 2V6G-A nrPDB 27 3.4 3ZPC-A nrPDB 27 4.4 2B3J-A nrPDB 26 4.7 5AFN-A nrPDB 26 5.4 2NX8-A nrPDB 26 6.7 1ZVF-A nrPDB 26 7.2 >2FR6-A nrPDB Length = 146 Score = 216 bits (550), Expect = 3e-57, Method: Composition-based stats. Identities = 119/146 (81%), Positives = 137/146 (93%) Query: 1 MAQKRPACTLKPECVQQLLVCSQEAKKSAYCPYSHFPVGAALLTQEGRIFKGCNIENACY 60 MAQ+RP+C ++PE VQ+LL+ S+EAKKSAYCPYS FPVGAALLT +GRIF GCNIENACY Sbjct: 1 MAQERPSCAVEPEHVQRLLLSSREAKKSAYCPYSRFPVGAALLTGDGRIFSGCNIENACY 60 Query: 61 PLGICAERTAIQKAVSEGYKDFRAIAIASDMQDDFISPCGACRQVMREFGTNWPVYMTKP 120 PLG+CAERTAIQKA+SEGYKDFRAIAI+SD+Q++FISPCGACRQVMREFGT+W VYMTKP Sbjct: 61 PLGVCAERTAIQKAISEGYKDFRAIAISSDLQEEFISPCGACRQVMREFGTDWAVYMTKP 120 Query: 121 DGTYIVMTVQELLPSSFGPEDLQKTQ 146 DGT++V TVQELLP+SFGPEDLQK Q Sbjct: 121 DGTFVVRTVQELLPASFGPEDLQKIQ 146 >1MQ0-A nrPDB Length = 140 Score = 209 bits (531), Expect = 4e-55, Method: Composition-based stats. Identities = 135/137 (98%), Positives = 137/137 (100%) Query: 10 LKPECVQQLLVCSQEAKKSAYCPYSHFPVGAALLTQEGRIFKGCNIENACYPLGICAERT 69 +KPECVQQLLVCSQEAK+SAYCPYSHFPVGAALLTQEGRIFKGCNIENACYPLGICAERT Sbjct: 4 MKPECVQQLLVCSQEAKQSAYCPYSHFPVGAALLTQEGRIFKGCNIENACYPLGICAERT 63 Query: 70 AIQKAVSEGYKDFRAIAIASDMQDDFISPCGACRQVMREFGTNWPVYMTKPDGTYIVMTV 129 AIQKAVSEGYKDFRAIAIASDMQDDFISPCGACRQVMREFGTNWPVYMTKPDGTYIVMTV Sbjct: 64 AIQKAVSEGYKDFRAIAIASDMQDDFISPCGACRQVMREFGTNWPVYMTKPDGTYIVMTV 123 Query: 130 QELLPSSFGPEDLQKTQ 146 QELLPSSFGPEDLQKTQ Sbjct: 124 QELLPSSFGPEDLQKTQ 140 >2D30-A nrPDB Length = 141 Score = 166 bits (421), Expect = 2e-42, Method: Composition-based stats. Identities = 70/130 (53%), Positives = 90/130 (69%), Gaps = 2/130 (1%) Query: 16 QQLLVCSQEAKKSAYCPYSHFPVGAALLTQEGRIFKGCNIENACYPLGICAERTAIQKAV 75 +QL+ + EA+K AY PYS F VGAALLTQ+G++++GCN+ENA Y L CAERTA+ KAV Sbjct: 13 KQLIQEAIEARKQAYVPYSKFQVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAV 72 Query: 76 SEGYKDFRAIAIASDMQDDFISPCGACRQVMREFG-TNWPVYMTKPDGTYIVMTVQELLP 134 SEG K+F AIAI +D + + PCGACRQVM E + VY++ G TV ELLP Sbjct: 73 SEGDKEFVAIAIVADTKRP-VPPCGACRQVMVELCKQDTKVYLSNLHGDVQETTVGELLP 131 Query: 135 SSFGPEDLQK 144 +F EDL + Sbjct: 132 GAFLAEDLHE 141 >1UX0-A nrPDB Length = 136 Score = 164 bits (416), Expect = 1e-41, Method: Composition-based stats. Identities = 65/132 (49%), Positives = 91/132 (68%), Gaps = 2/132 (1%) Query: 16 QQLLVCSQEAKKSAYCPYSHFPVGAALLTQEGRIFKGCNIENACYPLGICAERTAIQKAV 75 Q+L+ + +A+ AY PYS F VGAALLT++G++++GCNIENA Y + CAE+TA+ KAV Sbjct: 4 QELITEALKARDMAYAPYSKFQVGAALLTKDGKVYRGCNIENAAYSMCNCAEQTALFKAV 63 Query: 76 SEGYKDFRAIAIASDMQDDFISPCGACRQVMREFGT-NWPVYMTKPDGTYIVMTVQELLP 134 SEG +F+ +A+A+D +SPCGACRQV+ E T + V +T G MTV+ELLP Sbjct: 64 SEGDTEFQMLAVAADTPGP-VSPCGACRQVISELCTKDVIVVLTNLQGQIKEMTVEELLP 122 Query: 135 SSFGPEDLQKTQ 146 +F EDL + Sbjct: 123 GAFSSEDLHDER 134 >3IJF-X nrPDB Length = 133 Score = 154 bits (388), Expect = 2e-38, Method: Composition-based stats. Identities = 46/125 (36%), Positives = 64/125 (51%), Gaps = 5/125 (4%) Query: 22 SQEAKKSAYCPYSHFPVGAALLTQEGRIFKGCNIENACYPLGICAERTAIQKAVSEGYKD 81 + +A AY PYS F VGAA L +GR+ GCN+EN Y L +CAE + S G Sbjct: 13 ATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVVCALHSTGGGR 72 Query: 82 FRAIAIASDMQDDFISPCGACRQVMREFGTNWPVYMTKPDGTYIVMTVQELLPSSFGPED 141 A+A D + PCG CRQV+ E G + + D + +LLP +FG +D Sbjct: 73 LLALACV-DGHGSVLMPCGRCRQVLLEHGGSELLI----DHPVRPRRLGDLLPDAFGLDD 127 Query: 142 LQKTQ 146 L + + Sbjct: 128 LPRER 132 >3MPZ-A nrPDB Length = 150 Score = 152 bits (385), Expect = 4e-38, Method: Composition-based stats. Identities = 49/127 (38%), Positives = 66/127 (51%), Gaps = 5/127 (3%) Query: 18 LLVCSQEAKKSAYCPYSHFPVGAALLTQEGRIFKGCNIENACYPLGICAERTAIQKAVSE 77 L + E + AY PYS FPVGAA L +GR GCN+EN Y LG+CAE + S Sbjct: 28 LRSKAIEVSRHAYAPYSGFPVGAAALVDDGRTVTGCNVENVSYGLGLCAECAVVCALHSG 87 Query: 78 GYKDFRAIAIASDMQDDFISPCGACRQVMREFGTNWPVYMTKPDGTYIVMTVQELLPSSF 137 G A++ + PCG CRQV+ E G + D + ++ELLP +F Sbjct: 88 GGGRLVALSCVGP-DGGVLMPCGRCRQVLLEHGGPELLI----DHAHGPRPLRELLPDAF 142 Query: 138 GPEDLQK 144 GP+DL + Sbjct: 143 GPDDLGR 149 >1R5T-A nrPDB Length = 142 Score = 150 bits (380), Expect = 2e-37, Method: Composition-based stats. Identities = 53/137 (38%), Positives = 82/137 (59%), Gaps = 3/137 (2%) Query: 10 LKPECVQQLLVCSQEAKKSAYCPYSHFPVGAALLTQEGRIFKGCNIENACYPLGICAERT 69 ++ ++ L + +A + +Y PYSHF VG ++LT IF G N+ENA Y ICAER+ Sbjct: 6 IEDRQLEALKRAALKACELSYSPYSHFRVGCSILTNNDVIFTGANVENASYSNCICAERS 65 Query: 70 AIQKAVSEGYKD-FRAIAIASDMQDDFISPCGACRQVMREF-GTNWPVYMTKPDGTYI-V 126 A+ + + G++ ++ + I D +D +SPCG CRQ + EF ++P+ M G+ V Sbjct: 66 AMIQVLMAGHRSGWKCMVICGDSEDQCVSPCGVCRQFINEFVVKDFPIVMLNSTGSRSKV 125 Query: 127 MTVQELLPSSFGPEDLQ 143 MT+ ELLP +FGP L Sbjct: 126 MTMGELLPMAFGPSHLN 142 >3R2N-A nrPDB Length = 138 Score = 143 bits (361), Expect = 2e-35, Method: Composition-based stats. Identities = 45/124 (36%), Positives = 65/124 (52%), Gaps = 5/124 (4%) Query: 18 LLVCSQEAKKSAYCPYSHFPVGAALLTQEGRIFKGCNIENACYPLGICAERTAIQKAVSE 77 L + A+ ++Y PYS+FPVG A +GR+ G N+ENA Y L +CAE + I + Sbjct: 13 LQKAAVAARANSYAPYSNFPVGVAGFVNDGRLITGVNVENASYGLALCAECSMISALYAT 72 Query: 78 GYKDFRAIAIASDMQDDFISPCGACRQVMREFGTNWPVYMTKPDGTYIVMTVQELLPSSF 137 G A+ D D + PCG CRQ++ E G MT V T+ +LLP +F Sbjct: 73 GGGRLVAV-YCVDGNGDSLMPCGRCRQLLYEHGGPELKIMT----PKGVQTMAQLLPQAF 127 Query: 138 GPED 141 P++ Sbjct: 128 NPQE 131 >4EG2-A nrPDB Length = 298 Score = 142 bits (359), Expect = 4e-35, Method: Composition-based stats. Identities = 53/150 (35%), Positives = 64/150 (42%), Gaps = 23/150 (15%) Query: 8 CTLKPECVQQLLVCSQE------------AKKSAYCPYSHFPVGAALLTQEGRIFKGCNI 55 T E QQLL S A +Y P S F VGA + GR++ G N+ Sbjct: 34 ATFSAEQYQQLLTLSGLEDADLRVALLPIAAAYSYAPISEFYVGAIVRGISGRLYLGANM 93 Query: 56 ENACYPLG--ICAERTAIQKAVSEGYKDFRAIAIASDMQDDFISPCGACRQVMREFGTNW 113 E LG + AE+ AI A +G K I I SPCG CRQ M E T Sbjct: 94 EFTGAQLGQTVHAEQCAISHAWMKGEKGVADITIN-------FSPCGHCRQFMNELTTAS 146 Query: 114 PVYMTKPDGTYIVMTVQELLPSSFGPEDLQ 143 + + P T+QE LP SFGP DL Sbjct: 147 SLKIQLPKRA--AKTLQEYLPESFGPADLG 174 Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 31/64 (48%) Query: 16 QQLLVCSQEAKKSAYCPYSHFPVGAALLTQEGRIFKGCNIENACYPLGICAERTAIQKAV 75 ++L+ + A ++ PY+ G AL + G I+ G ENA + + + A+ +A+ Sbjct: 193 EELIQQALRAMNISHSPYTQNFSGVALKMRSGAIYLGAYAENAAFNPSLPPLQVALAQAM 252 Query: 76 SEGY 79 G Sbjct: 253 MMGE 256 >3DMO-A nrPDB Length = 138 Score = 135 bits (341), Expect = 5e-33, Method: Composition-based stats. Identities = 57/123 (46%), Positives = 79/123 (64%), Gaps = 4/123 (3%) Query: 18 LLVCSQEAKKSAYCPYSHFPVGAALLTQEGRIFKGCNIENACYPLGICAERTAIQKAVSE 77 L+ ++ A++ AY PYS+F VGAAL+T +G++F GCN+ENA Y L CAERTA+ A++ Sbjct: 14 LIEAAKAAREKAYAPYSNFKVGAALVTNDGKVFHGCNVENASYGLCNCAERTALFSALAA 73 Query: 78 GY--KDFRAIAIASDMQDDFISPCGACRQVMREFG-TNWPVYMTKPDGTYIVMTVQELLP 134 GY +F AIA+ + I+PCGACRQVM E G V +T G V + +LLP Sbjct: 74 GYRPGEFAAIAVVGETHGP-IAPCGACRQVMIELGKPTLEVVLTNMQGDVRVTSAGDLLP 132 Query: 135 SSF 137 +F Sbjct: 133 DAF 135 >1CTU-A nrPDB Length = 294 Score = 126 bits (317), Expect = 3e-30, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 11/115 (9%) Query: 31 CPYSHFPVGAALLTQEGRIFKGCNIEN--ACYPLGICAERTAIQKAVSEGYKDFRAIAIA 88 P S+F VGA G + G N+E A + AE++AI A G K AI + Sbjct: 66 TPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITVN 125 Query: 89 SDMQDDFISPCGACRQVMREFGTNWPVYMTKPDGTYIVMTVQELLPSSFGPEDLQ 143 +PCG CRQ M E + + + P +++ LP +FGP+DL+ Sbjct: 126 -------YTPCGHCRQFMNELNSGLDLRIHLPGRE--AHALRDYLPDAFGPKDLE 171 Score = 39.3 bits (90), Expect = 7e-04, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 27/51 (52%) Query: 29 AYCPYSHFPVGAALLTQEGRIFKGCNIENACYPLGICAERTAIQKAVSEGY 79 ++ PYS P G AL ++GRIF G ENA + + + A+ +GY Sbjct: 202 SHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTLPPLQGALILLNLKGY 252 >2Z3H-A nrPDB Length = 130 Score = 120 bits (300), Expect = 3e-28, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 3/107 (2%) Query: 32 PYS-HFPVGAALLTQEGRIFKGCNIENACYPLGICAERTAIQKAVSEGYKDFRAIAIASD 90 P S + V +A L+ +GRIF G N+ + + G CAE + A + + I + Sbjct: 22 PISEDYSVASAALSSDGRIFTGVNVYH--FTGGPCAELVVLGTAAAAAAGNLTCIVAIGN 79 Query: 91 MQDDFISPCGACRQVMREFGTNWPVYMTKPDGTYIVMTVQELLPSSF 137 +SPCG CRQV+ + + DG + ++ELLPS + Sbjct: 80 ENRGILSPCGRCRQVLLDLHPGIKAIVKDSDGQPTAVGIRELLPSGY 126 >3OJ6-A nrPDB Length = 158 Score = 107 bits (266), Expect = 2e-24, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 10/141 (7%) Query: 2 AQKRPACTLKPECV----QQLLVCSQEAKKSAYCPYSHF-PVGAALLTQEGRIFKGCNIE 56 AQ + ++ PE + Q L+ + P S F V +A ++ +GR+F G N+ Sbjct: 14 AQTQGPGSMAPEPLSAAGQNLIDTATSVING--IPVSDFYSVASAAISDDGRVFSGVNVY 71 Query: 57 NACYPLGICAERTAIQKAVSEGYKDFRAIAIASDMQDDFISPCGACRQVMREFGTNWPVY 116 + + G CAE + A + G I ++ +SPCG CRQV+ + Sbjct: 72 H--FNGGPCAELVVLGVAAAAGATKLTHIVAIANEGRGILSPCGRCRQVLADLHPGIKAI 129 Query: 117 MTKPDGTYIVMTVQELLPSSF 137 + +G +V V+ELLPS + Sbjct: 130 VIGKEGPKMV-AVEELLPSIY 149 >3B8F-A nrPDB Length = 142 Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 5/100 (5%) Query: 39 GAALLTQEGRIFKGCNIENACYPLGICAERTAIQKAVSEGYKDFRAIAIASDMQD----D 94 AA+ ++G I+ + +C E AI +A + K + + Sbjct: 26 AAAIRVEDGTIYTSVAPDVINASTELCMETGAILEAH-KFQKKVTHSICLARENEHSELK 84 Query: 95 FISPCGACRQVMREFGTNWPVYMTKPDGTYIVMTVQELLP 134 +SPCG C++ + +G +T I ++EL P Sbjct: 85 VLSPCGVCQERLFYWGPEVQCAITNAKQDIIFKPLKELQP 124 >2HXV-A nrPDB Length = 360 Score = 31.2 bits (69), Expect = 0.17, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 16/102 (15%) Query: 37 PVGAALLTQEGRIFKGCNIENACYPLGICAERTAIQKAVSEGYKDFRAIAIASDMQDDFI 96 PVG A++ ++GRI Y G AER AI+ A +G A I + + Sbjct: 37 PVG-AVVVKDGRIIAEG---FHPYFGGPHAERMAIESARKKGEDLRGATLIVT------L 86 Query: 97 SPCGA------CRQVMREFGTNWPVYMTKPDGTYIVMTVQEL 132 PC C ++ E G V T+ V++ Sbjct: 87 EPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNPVSGNGVEKF 128 >5D2Y-A nrPDB Length = 264 Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 37 PVGAALLTQEGRIFKGCNIEN 57 + AAL+ ++GR+ KG N EN Sbjct: 6 RIDAALIMKDGRVVKGSNFEN 26 >3VML-A nrPDB Length = 375 Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats. Identities = 12/80 (15%), Positives = 25/80 (31%), Gaps = 8/80 (10%) Query: 19 LVCSQEAKKSAYCPYSHFPVGAALLTQEGRIFKGCNIENACYPLGICAERTAIQKAVSEG 78 ++ + EA+ Y+ + VG + GC + A A+ S G Sbjct: 35 VLKAVEARFGLNIEYTEYDVGGIAIDN-----HGCPLPEATLKGCEAADAVLFG---SVG 86 Query: 79 YKDFRAIAIASDMQDDFISP 98 + + + + P Sbjct: 87 GPKWEHLPPNDQPERGALLP 106 >3VMK-A nrPDB Length = 375 Score = 27.0 bits (58), Expect = 2.8, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 8/80 (10%) Query: 19 LVCSQEAKKSAYCPYSHFPVGAALLTQEGRIFKGCNIENACYPLGICAERTAIQKAVSEG 78 ++ + E + YS + VG A + GC + A A+ S G Sbjct: 35 VLAAVEKRFDLSIEYSEYDVGGAAIDN-----HGCPLPEATLKGCEAADAVLFG---SVG 86 Query: 79 YKDFRAIAIASDMQDDFISP 98 + + + + P Sbjct: 87 GPKWEHLPPNDQPERGALLP 106 >4QHR-A nrPDB Length = 356 Score = 27.0 bits (58), Expect = 3.3, Method: Composition-based stats. Identities = 9/26 (34%), Positives = 12/26 (46%) Query: 56 ENACYPLGICAERTAIQKAVSEGYKD 81 E+ Y CA++ VS GY D Sbjct: 250 EHVGYGSTFCAQQAMDIAIVSIGYGD 275 >3FV3-A nrPDB Length = 339 Score = 27.0 bits (58), Expect = 3.4, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 41/113 (36%), Gaps = 9/113 (7%) Query: 19 LVCSQEAKKSAYCPYSHFPVGAALLTQEGRIFKGCNIENACYPLGICAERTAIQKAVSEG 78 L + + +AY Y + P + G I G ++NA Y + AE+ +A++ Sbjct: 147 LKKQGKIRTNAYSLYLNSPSA-----ETGTIIFG-GVDNAKYSGKLVAEQVTSSQALTIS 200 Query: 79 YKDFRAIAIASDMQDDFISPCGACRQVMREFGTNWPVYMTKPDGTYIVMTVQE 131 + D + G + F +++ + G +V ++ Sbjct: 201 LASVNLKGSSFSFGDGALLDSGT---TLTYFPSDFAAQLADKAGARLVQVARD 250 >2V6G-A nrPDB Length = 364 Score = 27.0 bits (58), Expect = 3.4, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 8/56 (14%) Query: 30 YCPYSHFP------VGAALLTQEGRI--FKGCNIENACYPLGICAERTAIQKAVSE 77 + PYS V AA+ EG++ F GC Y A+ A + Sbjct: 184 FSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAWDGYSDCSDADLIAEHHIWAA 239 >3ZPC-A nrPDB Length = 382 Score = 26.6 bits (57), Expect = 4.4, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 5/88 (5%) Query: 13 ECVQQLLVCSQE-AKKSAYCPYSHFPVGAALLTQEGRIFKGCNIENACYPLGICAERTAI 71 + Q + + E AK+ Y + VG ++ + I +G AE A+ Sbjct: 26 KQDQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDDQLIGEG----FHPKAGQPHAEVFAL 81 Query: 72 QKAVSEGYKDFRAIAIASDMQDDFISPC 99 ++A + + + PC Sbjct: 82 RQAGEQAQGATAYVTLEPCAHYGRTPPC 109 >2B3J-A nrPDB Length = 159 Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 5/85 (5%) Query: 18 LLVCSQEAKKSAYCPYSHFPVGAALLTQEGRIFKGCNIENACYPLGICAERTAIQKAVSE 77 + + E K A P+GA + + I + N+ AE AI++A Sbjct: 10 FMTLAIEEAKKA-AQLGEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERA--- 65 Query: 78 GYKDFRAIAIASDMQDDFISPCGAC 102 K + + + PC C Sbjct: 66 -AKVLGSWRLEGCTLYVTLEPCVMC 89 >5AFN-A nrPDB Length = 207 Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 19/40 (47%) Query: 14 CVQQLLVCSQEAKKSAYCPYSHFPVGAALLTQEGRIFKGC 53 ++L + QEA S Y PYS F + + R ++ C Sbjct: 149 HSRELDLQMQEADISGYIPYSRFELVGVTQKRSERFYECC 188 >2NX8-A nrPDB Length = 179 Score = 25.8 bits (55), Expect = 6.7, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 11/89 (12%) Query: 15 VQQLLVCSQEAKKSAYCPYSHFPVGAALLTQEGRIFKGCNIENACYPLGICAERTAIQKA 74 +Q+ L S+++ + A P +G ++ I +G N + AE AI +A Sbjct: 20 MQEALKESEKSLQKAEIP-----IGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEA 74 Query: 75 VS-EGYKDFRAIAIASDMQDDFISPCGAC 102 + EG + I PC C Sbjct: 75 NAHEGNWRLLDTTLFV-----TIEPCVMC 98 >1ZVF-A nrPDB Length = 176 Score = 25.8 bits (55), Expect = 7.2, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 7/37 (18%) Query: 99 CGACRQV-------MREFGTNWPVYMTKPDGTYIVMT 128 C CRQV M + GT + + T Sbjct: 127 CSHCRQVVHESELQMLDLGTQVKEAILDFENDVEKRT 163 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.313 0.133 0.370 Lambda K H 0.267 0.0405 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,101,485 Number of Sequences: 36641 Number of extensions: 166473 Number of successful extensions: 520 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 14 Number of HSP's that attempted gapping in prelim test: 439 Number of HSP's gapped (non-prelim): 53 length of query: 146 length of database: 10,336,785 effective HSP length: 88 effective length of query: 58 effective length of database: 7,112,377 effective search space: 412517866 effective search space used: 412517866 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.4 bits) S2: 54 (25.4 bits)