BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P31941 (199 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 5KEG-A nrPDB 417 e-117 2NBQ-A nrPDB 355 9e-99 5CQD-A nrPDB 326 4e-90 3V4J-A nrPDB 239 4e-64 6BWY-A nrPDB 239 5e-64 6BUX-A nrPDB 239 8e-64 5JJ4-C nrPDB 178 2e-45 5W0U-B nrPDB 147 3e-36 5ZVB-A nrPDB 130 3e-31 5W2M-A nrPDB 124 4e-29 3VM8-A nrPDB 120 4e-28 5TKM-A nrPDB 114 2e-26 5W3V-B nrPDB 113 6e-26 5Z98-A nrPDB 99 2e-21 6BBO-A nrPDB 94 3e-20 1H2A-L nrPDB 28 1.8 5HHZ-A nrPDB 28 2.1 5D1Y-A nrPDB 28 2.2 2WGH-A nrPDB 28 2.3 3S9B-A nrPDB 28 3.5 1WWK-A nrPDB 27 4.6 4L6H-A nrPDB 27 5.5 3J9M-A4 nrPDB 27 5.5 6GAZ-Ao nrPDB 27 6.9 6GAW-Ao nrPDB 27 7.8 4AYL-A nrPDB 26 8.9 >5KEG-A nrPDB Length = 203 Score = 417 bits (1071), Expect = e-117, Method: Compositional matrix adjust. Identities = 197/199 (98%), Positives = 197/199 (98%) Query: 1 MEASPASGPRHLMDPHIFTSNFNNGIGRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQAK 60 MEASPASGPRHLMDPHIFTSNFNNGIGRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQAK Sbjct: 5 MEASPASGPRHLMDPHIFTSNFNNGIGRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQAK 64 Query: 61 NLLCGFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHV 120 NLLCGFYGRHA LRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHV Sbjct: 65 NLLCGFYGRHAALRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHV 124 Query: 121 RLRIFAARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGCPFQPWDGLD 180 RLRIFAARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQG PFQPWDGLD Sbjct: 125 RLRIFAARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGAPFQPWDGLD 184 Query: 181 EHSQALSGRLRAILQNQGN 199 EHSQALSGRLRAILQNQGN Sbjct: 185 EHSQALSGRLRAILQNQGN 203 >2NBQ-A nrPDB Length = 205 Score = 355 bits (910), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 171/193 (88%), Positives = 178/193 (92%), Gaps = 3/193 (1%) Query: 10 RHLMDPHIFTSNFNNG---IGRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQAKNLLCGF 66 R+LMDP FT NFNN + R +TYLCYEVERLDNGT V MDQH GFL N+AKNLLCGF Sbjct: 5 RYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHMGFLCNEAKNLLCGF 64 Query: 67 YGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFA 126 YGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFA Sbjct: 65 YGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFA 124 Query: 127 ARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGCPFQPWDGLDEHSQAL 186 ARIYDYDPLYKEALQMLRDAGAQVSIMTYDEF++CWDTFV QGCPFQPWDGL+EHSQAL Sbjct: 125 ARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFVYRQGCPFQPWDGLEEHSQAL 184 Query: 187 SGRLRAILQNQGN 199 SGRLRAILQNQGN Sbjct: 185 SGRLRAILQNQGN 197 >5CQD-A nrPDB Length = 186 Score = 326 bits (836), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 160/189 (84%), Positives = 168/189 (88%), Gaps = 11/189 (5%) Query: 10 RHLMDPHIFTSNFNNG---IGRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQAKNLLCGF 66 R+LMDP FTSNFNN + R +TYLCYEVERLDNGTSVKMDQH GFL N++ Sbjct: 5 RYLMDPDTFTSNFNNDPLVLRRRQTYLCYEVERLDNGTSVKMDQHMGFLCNES------- 57 Query: 67 YGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFA 126 GRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRI A Sbjct: 58 -GRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIKA 116 Query: 127 ARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGCPFQPWDGLDEHSQAL 186 ARIYDYDPLYKEALQMLRDAGAQVSIMTYDEF++CWDTFV QGCPFQPWDGL+EHSQAL Sbjct: 117 ARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFVYRQGCPFQPWDGLEEHSQAL 176 Query: 187 SGRLRAILQ 195 SGRLRAILQ Sbjct: 177 SGRLRAILQ 185 >3V4J-A nrPDB Length = 207 Score = 239 bits (611), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 125/193 (64%), Positives = 141/193 (73%), Gaps = 5/193 (2%) Query: 10 RHLMDPHIFTSNFNNGI---GRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQAKNLLCGF 66 RH MDP FT NFNN GRH+TYLCYEVER+ N T VK++Q RGFL NQA + Sbjct: 17 RHSMDPPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVKLNQRRGFLANQAPHKHGFL 76 Query: 67 YGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFA 126 GRHAEL FLD++P +LD Q YRVT F SWSPCFS CA E+ F+ +N HV L I Sbjct: 77 EGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFS--CAQEMAKFISKNKHVSLCIKT 134 Query: 127 ARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGCPFQPWDGLDEHSQAL 186 ARIYD +E L+ L +AGA++SIMTY EFKHCWDTFVDHQG PFQPWDGLDEHSQ L Sbjct: 135 ARIYDDQGRAQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQGAPFQPWDGLDEHSQDL 194 Query: 187 SGRLRAILQNQGN 199 SGRLRAILQNQ N Sbjct: 195 SGRLRAILQNQEN 207 >6BWY-A nrPDB Length = 361 Score = 239 bits (610), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 124/192 (64%), Positives = 140/192 (72%), Gaps = 5/192 (2%) Query: 11 HLMDPHIFTSNFNNGI---GRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQAKNLLCGFY 67 H MDP FT NFNN GRH+TYLCYEVER+ N T VK++Q RGFL NQA + Sbjct: 172 HSMDPPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVKLNQRRGFLANQAPHKHGFLE 231 Query: 68 GRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFAA 127 GRHAEL FLD++P +LD Q YRVT F SWSPCFS CA E+ F+ +N HV L I A Sbjct: 232 GRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFS--CAQEMAKFISKNKHVSLCIKTA 289 Query: 128 RIYDYDPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGCPFQPWDGLDEHSQALS 187 RIYD +E L+ L +AGA++SIMTY EFKHCWDTFVDHQG PFQPWDGLDEHSQ LS Sbjct: 290 RIYDDQGRAQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQGAPFQPWDGLDEHSQDLS 349 Query: 188 GRLRAILQNQGN 199 GRLRAILQNQ N Sbjct: 350 GRLRAILQNQEN 361 >6BUX-A nrPDB Length = 199 Score = 239 bits (609), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 125/193 (64%), Positives = 139/193 (72%), Gaps = 5/193 (2%) Query: 10 RHLMDPHIFTSNFNNGI---GRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQAKNLLCGF 66 RH MDP FT NFNN GRH+TYLCYEVER+ N T VK+ Q RGFL NQAK+ Sbjct: 9 RHSMDPATFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVKLAQRRGFLANQAKHKHGFL 68 Query: 67 YGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFA 126 GRHA L FLD++P +LD Q YRVT F SWSPCFS CA E+ F+ +N HV L I Sbjct: 69 EGRHAALCFLDVIPFWKLDLDQDYRVTCFTSWSPCFS--CAQEMAKFISKNKHVSLCIKT 126 Query: 127 ARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGCPFQPWDGLDEHSQAL 186 ARIYD E L+ L +AGA++SIMTY EFKHCWDTFVDHQG PFQPWDGLDEHSQ L Sbjct: 127 ARIYDDKGRAAEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQGAPFQPWDGLDEHSQDL 186 Query: 187 SGRLRAILQNQGN 199 SGRLRAILQNQ N Sbjct: 187 SGRLRAILQNQEN 199 >5JJ4-C nrPDB Length = 546 Score = 178 bits (451), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 95/185 (51%), Positives = 121/185 (65%), Gaps = 14/185 (7%) Query: 12 LMDPHIFTSNFNNGIGRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQAKNLLCGFYGRHA 71 LMDPHIFTSNFNNGIGRHKTYLCYEVERLD+ TS +D G+L N+ G H Sbjct: 371 LMDPHIFTSNFNNGIGRHKTYLCYEVERLDSATSFSLD--FGYLRNKN--------GCHV 420 Query: 72 ELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFAARIY- 130 EL FL + LDP + YRVTWF SWSPC+ CA V FL+ N ++ LRIF AR+Y Sbjct: 421 ELLFLRYISDWDLDPGRCYRVTWFTSWSPCYD--CARHVADFLRGNPNLSLRIFTARLYF 478 Query: 131 -DYDPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGCPFQPWDGLDEHSQALSGR 189 + E L+ L AG Q++IMT+ ++ +CW+TFV++ F+ W+GL E+S LS + Sbjct: 479 CEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHENSVRLSRQ 538 Query: 190 LRAIL 194 LR IL Sbjct: 539 LRRIL 543 >5W0U-B nrPDB Length = 549 Score = 147 bits (371), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 83/190 (43%), Positives = 112/190 (58%), Gaps = 17/190 (8%) Query: 11 HLMDPHIFTSNFNN---GIGRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQAKNLLCGFY 67 MDP FT F N GR +TYLCY V+R D+ TS +D G+L N+ Sbjct: 372 EFMDPATFTYQFKNVRWAKGRRETYLCYVVKRRDSATSESLD--FGYLRNKN-------- 421 Query: 68 GRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFAA 127 G H L FL + LDP + YRVTWF SWSPC+ CA V FL+ N ++ LRIF A Sbjct: 422 GCHVALLFLRYISDWDLDPGRCYRVTWFTSWSPCYD--CARHVADFLRGNPNLSLRIFTA 479 Query: 128 RIY--DYDPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGCPFQPWDGLDEHSQA 185 R+Y + E L+ L +AG Q++IMTY ++++CW+TFV++ F+ W+GL E+S Sbjct: 480 RLYFCEDRKAEPEGLRRLAEAGVQIAIMTYKDYEYCWNTFVENHERTFKAWEGLHENSVR 539 Query: 186 LSGRLRAILQ 195 LS +LR ILQ Sbjct: 540 LSRQLRRILQ 549 >5ZVB-A nrPDB Length = 209 Score = 130 bits (327), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 80/188 (42%), Positives = 103/188 (54%), Gaps = 14/188 (7%) Query: 13 MDPHIFTSNFNNGI---GRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQAK-NLLCGFYG 68 MDP FT NFNN GRH+TYLC+ +E + + + V RG NQ C Sbjct: 31 MDPPTFTFNFNNEPWVRGRHETYLCFTMEVVKHHSPVSWK--RGVFRNQVDPETHC---- 84 Query: 69 RHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFAAR 128 HAE FL L P Y VTW+ SWSPC CAGEV FL +++V L IF AR Sbjct: 85 -HAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPE--CAGEVAEFLARHSNVNLTIFTAR 141 Query: 129 IYDY-DPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGCPFQPWDGLDEHSQALS 187 +Y + D Y+E L+ L GA V IM Y +FK+CW+ FV + PF+PW GL + L Sbjct: 142 LYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDDEPFKPWKGLKYNFLFLD 201 Query: 188 GRLRAILQ 195 +L+ IL+ Sbjct: 202 SKLQEILE 209 >5W2M-A nrPDB Length = 184 Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 76/193 (39%), Positives = 103/193 (53%), Gaps = 14/193 (7%) Query: 8 GPRHLMDPHIFTSNFNN---GIGRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQAK-NLL 63 P M PHIF +F N GR++++LC+ +E + + + V RG NQ Sbjct: 1 NPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWK--RGVFRNQVDPETH 58 Query: 64 CGFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLR 123 C HAE FL L P Y VTW+ SWSPC CAGEV FL +++V L Sbjct: 59 C-----HAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPE--CAGEVAEFLARHSNVNLT 111 Query: 124 IFAARIYDY-DPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGCPFQPWDGLDEH 182 IF AR+Y + D Y+E L+ L GA V IM Y +FK+CW+ FV + PF+PW GL + Sbjct: 112 IFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDDEPFKPWKGLKYN 171 Query: 183 SQALSGRLRAILQ 195 L +L+ IL+ Sbjct: 172 FLFLDSKLQEILE 184 >3VM8-A nrPDB Length = 190 Score = 120 bits (301), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 75/193 (38%), Positives = 99/193 (51%), Gaps = 14/193 (7%) Query: 8 GPRHLMDPHIFTSNFNN---GIGRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQAKNLL- 63 P M P F F N R++T+LC+ VE + + V G NQ + Sbjct: 7 NPMKAMYPGTFYFQFKNLWEANDRNETWLCFTVEGIKRRSVVSWKT--GVFRNQVDSETH 64 Query: 64 CGFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLR 123 C HAE FL L P Y+VTW+ SWSPC CAGEV FL +++V L Sbjct: 65 C-----HAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPD--CAGEVAEFLARHSNVNLT 117 Query: 124 IFAARIYDYD-PLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGCPFQPWDGLDEH 182 IF AR+Y + P Y+E L+ L G V IM Y++FK+CW+ FV + PF+PW GL + Sbjct: 118 IFTARLYYFQYPCYQEGLRSLSQEGVAVEIMDYEDFKYCWENFVYNDNEPFKPWKGLKTN 177 Query: 183 SQALSGRLRAILQ 195 + L RLR LQ Sbjct: 178 FRLLKRRLRESLQ 190 >5TKM-A nrPDB Length = 198 Score = 114 bits (286), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 72/193 (37%), Positives = 103/193 (53%), Gaps = 16/193 (8%) Query: 9 PRHLMDPHIFTSNFNNG---IGRHKTYLCYEVERLDNGTSVKMDQ--HRGFLHNQAKNLL 63 P MD F NF N GR T+LCYEV+ +++ D RG ++ + + Sbjct: 15 PMERMDRDTFYDNFENEPILSGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVYFKPQ--- 71 Query: 64 CGFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLR 123 HAE+ FL QL + +++TWF+SW+PC C ++ FL E+ +V L Sbjct: 72 -----YHAEMCFLSWFCGNQLPADKCFQITWFVSWTPCPD--CVAKLAEFLSEHPNVTLT 124 Query: 124 IFAARIYDYDPL-YKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGCPFQPWDGLDEH 182 I AAR+Y Y Y+ AL L AGA+V IM Y+EF +CW+ FVD++G F PW DE+ Sbjct: 125 ISAARLYYYSERDYRRALCRLSQAGARVKIMDYEEFAYCWENFVDNEGQQFMPWYKFDEN 184 Query: 183 SQALSGRLRAILQ 195 L L+ IL+ Sbjct: 185 YAFLHRTLKEILR 197 >5W3V-B nrPDB Length = 215 Score = 113 bits (282), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 71/193 (36%), Positives = 107/193 (55%), Gaps = 26/193 (13%) Query: 12 LMDPHIFTSNFNNGIGRHKTY------LCYEVERLDNGTSVKMDQHRGFLHNQAKNLLCG 65 L+ F+ FNN +K Y LCY++ + T RG L N+ ++ Sbjct: 5 LLTAKTFSLQFNNKRRVNKPYYPRKALLCYQLTPQNGSTPT-----RGHLINKKED---- 55 Query: 66 FYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIF 125 HAE+RF++ + S+ LD Q Y+VT +++WSPC S CAGE+ F++ + H+ LRIF Sbjct: 56 ----HAEIRFINEIKSMGLDETQCYQVTCYLTWSPCPS--CAGELVDFIKAHRHLNLRIF 109 Query: 126 AARI-YDYDPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGCP-FQPWDG---LD 180 A+R+ Y + P Y+E L +L + V +M EF CW+ FVDH+ P F P + LD Sbjct: 110 ASRLYYHWHPNYQEGLLLLCGSQVPVEVMGLPEFTDCWENFVDHKEPPSFNPSEKLKELD 169 Query: 181 EHSQALSGRLRAI 193 ++SQA+ RL I Sbjct: 170 KNSQAIKRRLERI 182 >5Z98-A nrPDB Length = 185 Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 65/200 (32%), Positives = 102/200 (51%), Gaps = 26/200 (13%) Query: 8 GPRHLMDPHIFTSNFNNGIGRH------KTYLCYEVERLDNGTSVKMDQHRGFLHNQAKN 61 G L+ F FNN K LCY++ + T RG+ N+ K Sbjct: 1 GSMALLTAETFRLQFNNRRRLRRPYYPRKALLCYQLTPQNGSTPT-----RGYFENKKKC 55 Query: 62 LLCGFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVR 121 HAE+ F++ + S+ LD Q Y+VT +++WSPC S CA ++ F+Q + H+ Sbjct: 56 --------HAEICFINEIKSMGLDETQCYQVTCYLTWSPCSS--CAWKLVDFIQAHDHLN 105 Query: 122 LRIFAARI-YDYDPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGC----PFQPW 176 LRIFA+R+ Y + +E L++L + V +M EF CW+ FVDH+ P + Sbjct: 106 LRIFASRLYYHWCKPQQEGLRLLCGSQVPVEVMGLPEFNDCWENFVDHEKPLSFDPCKML 165 Query: 177 DGLDEHSQALSGRLRAILQN 196 + LD++S+A+ RL I Q+ Sbjct: 166 EELDKNSRAIKRRLERIKQS 185 >6BBO-A nrPDB Length = 180 Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 61/195 (31%), Positives = 101/195 (51%), Gaps = 26/195 (13%) Query: 12 LMDPHIFTSNFNNGIGRH------KTYLCYEVERLDNGTSVKMDQHRGFLHNQAKNLLCG 65 L+ F FNN K LCY++ + T RG+ N+ + Sbjct: 1 LLTAETFRLQFNNKRRLRRPYYPRKALLCYQLTPQNGSTPT-----RGYFENKKEC---- 51 Query: 66 FYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIF 125 HA + F++ + S+ LD Q Y+VT +++WSPC S CA E+ F++ + H+ LRIF Sbjct: 52 ----HAAICFINEIKSMGLDETQCYQVTCYLTWSPCSS--CAWELVDFIKAHDHLNLRIF 105 Query: 126 AARI-YDYDPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQG----CPFQPWDGLD 180 A+R+ Y + ++ L++L + V +M + EF CW+ FVDH+ P++ + LD Sbjct: 106 ASRLYYHWCKPQQDGLRLLCGSQVPVEVMGFPEFADCWENFVDHEKPLSFNPYKMLEELD 165 Query: 181 EHSQALSGRLRAILQ 195 ++S+A+ RL I Q Sbjct: 166 KNSRAIKRRLDRIKQ 180 >1H2A-L nrPDB Length = 567 Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 15/68 (22%) Query: 40 LDNGTSVKMDQHRGFLHNQAKNLLCG----------FYGRHAELRFLDLVPSLQLDPAQI 89 +DN V + ++ ++ +NL+ G FY HA L F+D+ +L+ DPA+ Sbjct: 96 VDNAVGVHIPKNATYI----RNLVLGAQYLHDHIVHFYHLHA-LDFVDVTAALKADPAKA 150 Query: 90 YRVTWFIS 97 +V IS Sbjct: 151 AKVASSIS 158 >5HHZ-A nrPDB Length = 524 Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%) Query: 116 ENTHVRLRIF--AARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFKHCWD 163 E H L +F A+RI D+D + R AGA ++ Y KH WD Sbjct: 367 EVPHPWLNLFVPASRIADFDRGVFRGVLGGRTAGAGGPVLIYPMNKHKWD 416 >5D1Y-A nrPDB Length = 812 Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust. Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 8/74 (10%) Query: 51 HRGFLHNQAKNLLCGFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEV 110 RG H + KN + G + +P + D Q+Y+ W IS A E Sbjct: 667 ERGLWHEEMKNQIIACNGS------IQSIPEIPDDLKQLYKTVWEISQKTVLK--MAAER 718 Query: 111 RAFLQENTHVRLRI 124 AF+ ++ + + I Sbjct: 719 GAFIDQSQSLNIHI 732 >2WGH-A nrPDB Length = 676 Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust. Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 8/74 (10%) Query: 51 HRGFLHNQAKNLLCGFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEV 110 RG H + KN + G + +P + D Q+Y+ W IS A E Sbjct: 574 ERGLWHEEMKNQIIACNGS------IQSIPEIPDDLKQLYKTVWEISQKTVLK--MAAER 625 Query: 111 RAFLQENTHVRLRI 124 AF+ ++ + + I Sbjct: 626 GAFIDQSQSLNIHI 639 >3S9B-A nrPDB Length = 234 Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust. Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%) Query: 148 AQVSIMTYDEFKHCWDTF-VDHQGC-PFQPWDGLDEHS 183 ++S TY + HC + F V H+ C P PW D + Sbjct: 126 GKISTTTYPDVPHCTNIFIVKHKWCEPLYPWVPADSRT 163 >1WWK-A nrPDB Length = 307 Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust. Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 8/38 (21%) Query: 121 RLRIFAARIYDYDPLYKEALQMLRDAGAQVSIMTYDEF 158 R+++ A PL+++A+Q+L+DAG +V Y+E+ Sbjct: 3 RMKVLVAA-----PLHEKAIQVLKDAGLEV---IYEEY 32 >4L6H-A nrPDB Length = 789 Score = 26.9 bits (58), Expect = 5.5, Method: Composition-based stats. Identities = 13/20 (65%), Positives = 16/20 (80%), Gaps = 1/20 (5%) Query: 134 PLYKEALQMLRDAGA-QVSI 152 P+YKE LQ L++AGA QV I Sbjct: 220 PVYKELLQKLKEAGAEQVQI 239 >3J9M-A4 nrPDB Length = 579 Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 5/54 (9%) Query: 33 LCYEVERL----DNGTSVKMDQHRGFLHNQAKNLLCGFYGRHAELR-FLDLVPS 81 L Y+V L DN + DQHR F +++ +L+C L+ + DL+PS Sbjct: 321 LAYQVHGLLKTGDNWKFIGPDQHRNFYYSKFFDLICLMEQIDVTLKWYEDLIPS 374 >6GAZ-Ao nrPDB Length = 692 Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 5/80 (6%) Query: 8 GPRHLMDPHIFTSNFNNGIGRHKTYLCYEVERL----DNGTSVKMDQHRGFLHNQAKNLL 63 PR D F S L Y+V L DN + D R F +++ NLL Sbjct: 409 SPRDPDDDMFFQSAMRVCSSLRDLELAYQVHGLLNTGDNWKLIGSDHRRNFYYSKFFNLL 468 Query: 64 CGFYGRHAELR-FLDLVPSL 82 C L+ + DL+PS+ Sbjct: 469 CFMEQIDVTLKWYKDLIPSV 488 >6GAW-Ao nrPDB Length = 692 Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 5/80 (6%) Query: 8 GPRHLMDPHIFTSNFNNGIGRHKTYLCYEVERL----DNGTSVKMDQHRGFLHNQAKNLL 63 PR D F S L Y+V L DN + D R F +++ NLL Sbjct: 409 SPRDPDDDMFFQSAMRVCSSLRDLELAYQVHGLLNTGDNWKLIGSDHRRNFYYSKFFNLL 468 Query: 64 CGFYGRHAELR-FLDLVPSL 82 C L+ + DL+PS+ Sbjct: 469 CFMEQIDVTLKWYKDLIPSV 488 >4AYL-A nrPDB Length = 246 Score = 26.2 bits (56), Expect = 8.9, Method: Compositional matrix adjust. Identities = 10/27 (37%), Positives = 15/27 (55%) Query: 75 FLDLVPSLQLDPAQIYRVTWFISWSPC 101 FLD P++ L PA +Y W + + P Sbjct: 199 FLDNPPAITLSPAYLYPEGWLLPFEPI 225 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 5KEG-A nrPDB 340 3e-94 2NBQ-A nrPDB 307 2e-84 6BWY-A nrPDB 286 5e-78 5CQD-A nrPDB 282 6e-77 3V4J-A nrPDB 281 1e-76 6BUX-A nrPDB 277 3e-75 5JJ4-C nrPDB 262 8e-71 5W0U-B nrPDB 253 3e-68 5ZVB-A nrPDB 251 1e-67 5W2M-A nrPDB 249 7e-67 3VM8-A nrPDB 245 8e-66 5TKM-A nrPDB 234 2e-62 5W3V-B nrPDB 223 3e-59 5Z98-A nrPDB 222 6e-59 6BBO-A nrPDB 216 4e-57 Sequences not found previously or not previously below threshold: 5HHZ-A nrPDB 33 0.076 3ECM-A nrPDB 30 0.46 2GTT-A nrPDB 28 2.2 6H7W-J nrPDB 28 2.3 2F8A-A nrPDB 27 5.0 4P1T-A nrPDB 27 5.8 6BU2-A nrPDB 27 6.6 4BWV-A nrPDB 26 9.6 CONVERGED! >5KEG-A nrPDB Length = 203 Score = 340 bits (871), Expect = 3e-94, Method: Composition-based stats. Identities = 197/199 (98%), Positives = 197/199 (98%) Query: 1 MEASPASGPRHLMDPHIFTSNFNNGIGRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQAK 60 MEASPASGPRHLMDPHIFTSNFNNGIGRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQAK Sbjct: 5 MEASPASGPRHLMDPHIFTSNFNNGIGRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQAK 64 Query: 61 NLLCGFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHV 120 NLLCGFYGRHA LRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHV Sbjct: 65 NLLCGFYGRHAALRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHV 124 Query: 121 RLRIFAARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGCPFQPWDGLD 180 RLRIFAARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQG PFQPWDGLD Sbjct: 125 RLRIFAARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGAPFQPWDGLD 184 Query: 181 EHSQALSGRLRAILQNQGN 199 EHSQALSGRLRAILQNQGN Sbjct: 185 EHSQALSGRLRAILQNQGN 203 >2NBQ-A nrPDB Length = 205 Score = 307 bits (786), Expect = 2e-84, Method: Composition-based stats. Identities = 171/193 (88%), Positives = 177/193 (91%), Gaps = 3/193 (1%) Query: 10 RHLMDPHIFTSNFNNGI---GRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQAKNLLCGF 66 R+LMDP FT NFNN R +TYLCYEVERLDNGT V MDQH GFL N+AKNLLCGF Sbjct: 5 RYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHMGFLCNEAKNLLCGF 64 Query: 67 YGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFA 126 YGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFA Sbjct: 65 YGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFA 124 Query: 127 ARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGCPFQPWDGLDEHSQAL 186 ARIYDYDPLYKEALQMLRDAGAQVSIMTYDEF++CWDTFV QGCPFQPWDGL+EHSQAL Sbjct: 125 ARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFVYRQGCPFQPWDGLEEHSQAL 184 Query: 187 SGRLRAILQNQGN 199 SGRLRAILQNQGN Sbjct: 185 SGRLRAILQNQGN 197 >6BWY-A nrPDB Length = 361 Score = 286 bits (731), Expect = 5e-78, Method: Composition-based stats. Identities = 124/192 (64%), Positives = 140/192 (72%), Gaps = 5/192 (2%) Query: 11 HLMDPHIFTSNFNNGI---GRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQAKNLLCGFY 67 H MDP FT NFNN GRH+TYLCYEVER+ N T VK++Q RGFL NQA + Sbjct: 172 HSMDPPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVKLNQRRGFLANQAPHKHGFLE 231 Query: 68 GRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFAA 127 GRHAEL FLD++P +LD Q YRVT F SWSPCFS CA E+ F+ +N HV L I A Sbjct: 232 GRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFS--CAQEMAKFISKNKHVSLCIKTA 289 Query: 128 RIYDYDPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGCPFQPWDGLDEHSQALS 187 RIYD +E L+ L +AGA++SIMTY EFKHCWDTFVDHQG PFQPWDGLDEHSQ LS Sbjct: 290 RIYDDQGRAQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQGAPFQPWDGLDEHSQDLS 349 Query: 188 GRLRAILQNQGN 199 GRLRAILQNQ N Sbjct: 350 GRLRAILQNQEN 361 >5CQD-A nrPDB Length = 186 Score = 282 bits (721), Expect = 6e-77, Method: Composition-based stats. Identities = 160/189 (84%), Positives = 167/189 (88%), Gaps = 11/189 (5%) Query: 10 RHLMDPHIFTSNFNNGI---GRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQAKNLLCGF 66 R+LMDP FTSNFNN R +TYLCYEVERLDNGTSVKMDQH GFL N++ Sbjct: 5 RYLMDPDTFTSNFNNDPLVLRRRQTYLCYEVERLDNGTSVKMDQHMGFLCNES------- 57 Query: 67 YGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFA 126 GRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRI A Sbjct: 58 -GRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIKA 116 Query: 127 ARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGCPFQPWDGLDEHSQAL 186 ARIYDYDPLYKEALQMLRDAGAQVSIMTYDEF++CWDTFV QGCPFQPWDGL+EHSQAL Sbjct: 117 ARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFVYRQGCPFQPWDGLEEHSQAL 176 Query: 187 SGRLRAILQ 195 SGRLRAILQ Sbjct: 177 SGRLRAILQ 185 >3V4J-A nrPDB Length = 207 Score = 281 bits (719), Expect = 1e-76, Method: Composition-based stats. Identities = 125/193 (64%), Positives = 141/193 (73%), Gaps = 5/193 (2%) Query: 10 RHLMDPHIFTSNFNNGI---GRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQAKNLLCGF 66 RH MDP FT NFNN GRH+TYLCYEVER+ N T VK++Q RGFL NQA + Sbjct: 17 RHSMDPPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVKLNQRRGFLANQAPHKHGFL 76 Query: 67 YGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFA 126 GRHAEL FLD++P +LD Q YRVT F SWSPCFS CA E+ F+ +N HV L I Sbjct: 77 EGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFS--CAQEMAKFISKNKHVSLCIKT 134 Query: 127 ARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGCPFQPWDGLDEHSQAL 186 ARIYD +E L+ L +AGA++SIMTY EFKHCWDTFVDHQG PFQPWDGLDEHSQ L Sbjct: 135 ARIYDDQGRAQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQGAPFQPWDGLDEHSQDL 194 Query: 187 SGRLRAILQNQGN 199 SGRLRAILQNQ N Sbjct: 195 SGRLRAILQNQEN 207 >6BUX-A nrPDB Length = 199 Score = 277 bits (708), Expect = 3e-75, Method: Composition-based stats. Identities = 125/193 (64%), Positives = 139/193 (72%), Gaps = 5/193 (2%) Query: 10 RHLMDPHIFTSNFNNGI---GRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQAKNLLCGF 66 RH MDP FT NFNN GRH+TYLCYEVER+ N T VK+ Q RGFL NQAK+ Sbjct: 9 RHSMDPATFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVKLAQRRGFLANQAKHKHGFL 68 Query: 67 YGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFA 126 GRHA L FLD++P +LD Q YRVT F SWSPCFS CA E+ F+ +N HV L I Sbjct: 69 EGRHAALCFLDVIPFWKLDLDQDYRVTCFTSWSPCFS--CAQEMAKFISKNKHVSLCIKT 126 Query: 127 ARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGCPFQPWDGLDEHSQAL 186 ARIYD E L+ L +AGA++SIMTY EFKHCWDTFVDHQG PFQPWDGLDEHSQ L Sbjct: 127 ARIYDDKGRAAEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQGAPFQPWDGLDEHSQDL 186 Query: 187 SGRLRAILQNQGN 199 SGRLRAILQNQ N Sbjct: 187 SGRLRAILQNQEN 199 >5JJ4-C nrPDB Length = 546 Score = 262 bits (669), Expect = 8e-71, Method: Composition-based stats. Identities = 95/185 (51%), Positives = 121/185 (65%), Gaps = 14/185 (7%) Query: 12 LMDPHIFTSNFNNGIGRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQAKNLLCGFYGRHA 71 LMDPHIFTSNFNNGIGRHKTYLCYEVERLD+ TS +D G+L N+ G H Sbjct: 371 LMDPHIFTSNFNNGIGRHKTYLCYEVERLDSATSFSLD--FGYLRNKN--------GCHV 420 Query: 72 ELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFAARIY- 130 EL FL + LDP + YRVTWF SWSPC+ CA V FL+ N ++ LRIF AR+Y Sbjct: 421 ELLFLRYISDWDLDPGRCYRVTWFTSWSPCYD--CARHVADFLRGNPNLSLRIFTARLYF 478 Query: 131 -DYDPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGCPFQPWDGLDEHSQALSGR 189 + E L+ L AG Q++IMT+ ++ +CW+TFV++ F+ W+GL E+S LS + Sbjct: 479 CEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHENSVRLSRQ 538 Query: 190 LRAIL 194 LR IL Sbjct: 539 LRRIL 543 >5W0U-B nrPDB Length = 549 Score = 253 bits (647), Expect = 3e-68, Method: Composition-based stats. Identities = 83/190 (43%), Positives = 112/190 (58%), Gaps = 17/190 (8%) Query: 11 HLMDPHIFTSNFNN---GIGRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQAKNLLCGFY 67 MDP FT F N GR +TYLCY V+R D+ TS +D G+L N+ Sbjct: 372 EFMDPATFTYQFKNVRWAKGRRETYLCYVVKRRDSATSESLD--FGYLRNKN-------- 421 Query: 68 GRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFAA 127 G H L FL + LDP + YRVTWF SWSPC+ CA V FL+ N ++ LRIF A Sbjct: 422 GCHVALLFLRYISDWDLDPGRCYRVTWFTSWSPCYD--CARHVADFLRGNPNLSLRIFTA 479 Query: 128 RIY--DYDPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGCPFQPWDGLDEHSQA 185 R+Y + E L+ L +AG Q++IMTY ++++CW+TFV++ F+ W+GL E+S Sbjct: 480 RLYFCEDRKAEPEGLRRLAEAGVQIAIMTYKDYEYCWNTFVENHERTFKAWEGLHENSVR 539 Query: 186 LSGRLRAILQ 195 LS +LR ILQ Sbjct: 540 LSRQLRRILQ 549 >5ZVB-A nrPDB Length = 209 Score = 251 bits (641), Expect = 1e-67, Method: Composition-based stats. Identities = 79/188 (42%), Positives = 102/188 (54%), Gaps = 12/188 (6%) Query: 12 LMDPHIFTSNFNNGI---GRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQAKNLLCGFYG 68 MDP FT NFNN GRH+TYLC+ +E + + + V RG NQ Sbjct: 30 AMDPPTFTFNFNNEPWVRGRHETYLCFTMEVVKHHSPVSWK--RGVFRNQVDPET----H 83 Query: 69 RHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFAAR 128 HAE FL L P Y VTW+ SWSPC CAGEV FL +++V L IF AR Sbjct: 84 CHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPE--CAGEVAEFLARHSNVNLTIFTAR 141 Query: 129 IYD-YDPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGCPFQPWDGLDEHSQALS 187 +Y +D Y+E L+ L GA V IM Y +FK+CW+ FV + PF+PW GL + L Sbjct: 142 LYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDDEPFKPWKGLKYNFLFLD 201 Query: 188 GRLRAILQ 195 +L+ IL+ Sbjct: 202 SKLQEILE 209 >5W2M-A nrPDB Length = 184 Score = 249 bits (635), Expect = 7e-67, Method: Composition-based stats. Identities = 75/192 (39%), Positives = 102/192 (53%), Gaps = 12/192 (6%) Query: 8 GPRHLMDPHIFTSNFNN---GIGRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQAKNLLC 64 P M PHIF +F N GR++++LC+ +E + + + V RG NQ Sbjct: 1 NPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWK--RGVFRNQVDPET- 57 Query: 65 GFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRI 124 HAE FL L P Y VTW+ SWSPC CAGEV FL +++V L I Sbjct: 58 ---HCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPE--CAGEVAEFLARHSNVNLTI 112 Query: 125 FAARIYD-YDPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGCPFQPWDGLDEHS 183 F AR+Y +D Y+E L+ L GA V IM Y +FK+CW+ FV + PF+PW GL + Sbjct: 113 FTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDDEPFKPWKGLKYNF 172 Query: 184 QALSGRLRAILQ 195 L +L+ IL+ Sbjct: 173 LFLDSKLQEILE 184 >3VM8-A nrPDB Length = 190 Score = 245 bits (626), Expect = 8e-66, Method: Composition-based stats. Identities = 74/192 (38%), Positives = 98/192 (51%), Gaps = 12/192 (6%) Query: 8 GPRHLMDPHIFTSNFNN---GIGRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQAKNLLC 64 P M P F F N R++T+LC+ VE + + V G NQ + Sbjct: 7 NPMKAMYPGTFYFQFKNLWEANDRNETWLCFTVEGIKRRSVVSWKT--GVFRNQVDSET- 63 Query: 65 GFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRI 124 HAE FL L P Y+VTW+ SWSPC CAGEV FL +++V L I Sbjct: 64 ---HCHAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPD--CAGEVAEFLARHSNVNLTI 118 Query: 125 FAARIYDYD-PLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGCPFQPWDGLDEHS 183 F AR+Y + P Y+E L+ L G V IM Y++FK+CW+ FV + PF+PW GL + Sbjct: 119 FTARLYYFQYPCYQEGLRSLSQEGVAVEIMDYEDFKYCWENFVYNDNEPFKPWKGLKTNF 178 Query: 184 QALSGRLRAILQ 195 + L RLR LQ Sbjct: 179 RLLKRRLRESLQ 190 >5TKM-A nrPDB Length = 198 Score = 234 bits (596), Expect = 2e-62, Method: Composition-based stats. Identities = 72/195 (36%), Positives = 104/195 (53%), Gaps = 16/195 (8%) Query: 8 GPRHLMDPHIFTSNFNNGI---GRHKTYLCYEVERLDNGTSVKMDQ--HRGFLHNQAKNL 62 P MD F NF N GR T+LCYEV+ +++ D RG ++ + + Sbjct: 14 NPMERMDRDTFYDNFENEPILSGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVYFKPQ-- 71 Query: 63 LCGFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRL 122 HAE+ FL QL + +++TWF+SW+PC C ++ FL E+ +V L Sbjct: 72 ------YHAEMCFLSWFCGNQLPADKCFQITWFVSWTPCPD--CVAKLAEFLSEHPNVTL 123 Query: 123 RIFAARIYDYDPL-YKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGCPFQPWDGLDE 181 I AAR+Y Y Y+ AL L AGA+V IM Y+EF +CW+ FVD++G F PW DE Sbjct: 124 TISAARLYYYSERDYRRALCRLSQAGARVKIMDYEEFAYCWENFVDNEGQQFMPWYKFDE 183 Query: 182 HSQALSGRLRAILQN 196 + L L+ IL++ Sbjct: 184 NYAFLHRTLKEILRH 198 >5W3V-B nrPDB Length = 215 Score = 223 bits (569), Expect = 3e-59, Method: Composition-based stats. Identities = 71/195 (36%), Positives = 107/195 (54%), Gaps = 26/195 (13%) Query: 11 HLMDPHIFTSNFNNGIGRHKTY------LCYEVERLDNGTSVKMDQHRGFLHNQAKNLLC 64 L+ F+ FNN +K Y LCY++ + T RG L N+ ++ Sbjct: 4 ALLTAKTFSLQFNNKRRVNKPYYPRKALLCYQLTPQNGSTPT-----RGHLINKKED--- 55 Query: 65 GFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRI 124 HAE+RF++ + S+ LD Q Y+VT +++WSPC S CAGE+ F++ + H+ LRI Sbjct: 56 -----HAEIRFINEIKSMGLDETQCYQVTCYLTWSPCPS--CAGELVDFIKAHRHLNLRI 108 Query: 125 FAARIY-DYDPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGCP-FQPWDG---L 179 FA+R+Y + P Y+E L +L + V +M EF CW+ FVDH+ P F P + L Sbjct: 109 FASRLYYHWHPNYQEGLLLLCGSQVPVEVMGLPEFTDCWENFVDHKEPPSFNPSEKLKEL 168 Query: 180 DEHSQALSGRLRAIL 194 D++SQA+ RL I Sbjct: 169 DKNSQAIKRRLERIK 183 >5Z98-A nrPDB Length = 185 Score = 222 bits (566), Expect = 6e-59, Method: Composition-based stats. Identities = 65/200 (32%), Positives = 102/200 (51%), Gaps = 26/200 (13%) Query: 8 GPRHLMDPHIFTSNFNNGIGRH------KTYLCYEVERLDNGTSVKMDQHRGFLHNQAKN 61 G L+ F FNN K LCY++ + T RG+ N+ K Sbjct: 1 GSMALLTAETFRLQFNNRRRLRRPYYPRKALLCYQLTPQNGSTPT-----RGYFENKKKC 55 Query: 62 LLCGFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVR 121 HAE+ F++ + S+ LD Q Y+VT +++WSPC S CA ++ F+Q + H+ Sbjct: 56 --------HAEICFINEIKSMGLDETQCYQVTCYLTWSPCSS--CAWKLVDFIQAHDHLN 105 Query: 122 LRIFAARIY-DYDPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGC----PFQPW 176 LRIFA+R+Y + +E L++L + V +M EF CW+ FVDH+ P + Sbjct: 106 LRIFASRLYYHWCKPQQEGLRLLCGSQVPVEVMGLPEFNDCWENFVDHEKPLSFDPCKML 165 Query: 177 DGLDEHSQALSGRLRAILQN 196 + LD++S+A+ RL I Q+ Sbjct: 166 EELDKNSRAIKRRLERIKQS 185 >6BBO-A nrPDB Length = 180 Score = 216 bits (551), Expect = 4e-57, Method: Composition-based stats. Identities = 61/195 (31%), Positives = 101/195 (51%), Gaps = 26/195 (13%) Query: 12 LMDPHIFTSNFNNGIGRH------KTYLCYEVERLDNGTSVKMDQHRGFLHNQAKNLLCG 65 L+ F FNN K LCY++ + T RG+ N+ + Sbjct: 1 LLTAETFRLQFNNKRRLRRPYYPRKALLCYQLTPQNGSTPT-----RGYFENKKEC---- 51 Query: 66 FYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIF 125 HA + F++ + S+ LD Q Y+VT +++WSPC S CA E+ F++ + H+ LRIF Sbjct: 52 ----HAAICFINEIKSMGLDETQCYQVTCYLTWSPCSS--CAWELVDFIKAHDHLNLRIF 105 Query: 126 AARIY-DYDPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGC----PFQPWDGLD 180 A+R+Y + ++ L++L + V +M + EF CW+ FVDH+ P++ + LD Sbjct: 106 ASRLYYHWCKPQQDGLRLLCGSQVPVEVMGFPEFADCWENFVDHEKPLSFNPYKMLEELD 165 Query: 181 EHSQALSGRLRAILQ 195 ++S+A+ RL I Q Sbjct: 166 KNSRAIKRRLDRIKQ 180 >5HHZ-A nrPDB Length = 524 Score = 33.2 bits (74), Expect = 0.076, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 10/88 (11%) Query: 117 NTHVRLRIFAARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFKHCWD---TFVDHQGCPF 173 + + L + A+RI D+D + R AGA ++ Y KH WD + V F Sbjct: 370 HPWLNLFVPASRIADFDRGVFRGVLGGRTAGAGGPVLIYPMNKHKWDPRSSAVTPDEEVF 429 Query: 174 -------QPWDGLDEHSQALSGRLRAIL 194 G E +AL+ + + IL Sbjct: 430 YLVAFLRSALPGAPESLEALARQNQRIL 457 >3ECM-A nrPDB Length = 338 Score = 30.5 bits (67), Expect = 0.46, Method: Composition-based stats. Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 8/41 (19%) Query: 149 QVSIMTY--DEFKHCWDTFVD------HQGCPFQPWDGLDE 181 Q+S + Y + WD FVD H F+ W GLDE Sbjct: 297 QISFIDYFITDMFDAWDAFVDLPDLMQHLDNNFKYWKGLDE 337 >2GTT-A nrPDB Length = 450 Score = 28.2 bits (61), Expect = 2.2, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Query: 106 CAGEVRAFLQENTHVRLRIFAARIYDYDPLYKEALQMLRDAGAQVSI 152 C+G + +F + L A +Y + ++E ++ + + G + ++ Sbjct: 236 CSG-LVSFTGFIKQINLTAREAILYFFHKNFEEEIRRMFEPGQETAV 281 >6H7W-J nrPDB Length = 292 Score = 28.2 bits (61), Expect = 2.3, Method: Composition-based stats. Identities = 8/26 (30%), Positives = 13/26 (50%) Query: 7 SGPRHLMDPHIFTSNFNNGIGRHKTY 32 + P L P F NF N ++++Y Sbjct: 88 AAPGELQHPQTFDFNFKNVEKQYESY 113 >2F8A-A nrPDB Length = 208 Score = 27.0 bits (58), Expect = 5.0, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 1/63 (1%) Query: 68 GRHAELRFLDL-VPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFA 126 G H FL +P+ D + I+WSP A FL V LR ++ Sbjct: 131 GAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYS 190 Query: 127 ARI 129 R Sbjct: 191 RRF 193 >4P1T-A nrPDB Length = 746 Score = 27.0 bits (58), Expect = 5.8, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 4/62 (6%) Query: 19 TSNFNNGIGRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQAKNLLCGFYGRHAELRFLDL 78 +NN ++ LCY E+ ++ T K + L N R +L +L Sbjct: 371 YYKYNNAEKKNNKLLCY--EKDNDMTWSKKYIKK--LENGRSLEGVYVPPRRQQLCLYEL 426 Query: 79 VP 80 P Sbjct: 427 FP 428 >6BU2-A nrPDB Length = 151 Score = 26.6 bits (57), Expect = 6.6, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 1/75 (1%) Query: 117 NTHVRLRIFAARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGCPFQPW 176 + H+ + + I D + +EAL + + AQ+ +M + F+D +G Q Sbjct: 32 HDHLGMILVHEEINDDQGI-REALLAVPGSAAQIQLMAPLDESSVIAKFLDKRGPGIQQL 90 Query: 177 DGLDEHSQALSGRLR 191 A+ RLR Sbjct: 91 ACRVSDLDAMCRRLR 105 >4BWV-A nrPDB Length = 283 Score = 26.2 bits (56), Expect = 9.6, Method: Composition-based stats. Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 1/29 (3%) Query: 148 AQVSIMTYDEFKHCWDTFVDHQGCPFQPW 176 +V + Y EF+ CWD ++ P+ P Sbjct: 201 VKVQPLAYWEFRDCWD-YLTKYSLPYHPL 228 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.310 0.129 0.383 Lambda K H 0.267 0.0391 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 7,992,995 Number of Sequences: 36641 Number of extensions: 299102 Number of successful extensions: 1047 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 14 Number of HSP's that attempted gapping in prelim test: 924 Number of HSP's gapped (non-prelim): 52 length of query: 199 length of database: 10,336,785 effective HSP length: 92 effective length of query: 107 effective length of database: 6,965,813 effective search space: 745341991 effective search space used: 745341991 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (20.8 bits) S2: 56 (26.2 bits)