BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P31939 (592 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 5UY8-A nrPDB 1224 0.0 1M9N-A nrPDB 1059 0.0 4A1O-A nrPDB 221 7e-58 4EHI-A nrPDB 213 1e-55 1ZCZ-A nrPDB 167 1e-41 5VBA-A nrPDB 33 0.42 5VFB-A nrPDB 32 0.74 4HZ6-A nrPDB 32 0.88 3BJI-A nrPDB 31 1.9 3KY9-A nrPDB 30 2.4 3MSU-A nrPDB 30 3.9 >5UY8-A nrPDB Length = 601 Score = 1224 bits (3168), Expect = 0.0, Method: Compositional matrix adjust. Identities = 591/592 (99%), Positives = 592/592 (100%) Query: 1 MAPGQLALFSVSDKTGLVEFARNLTALGLNLVASGGTAKALRDAGLAVRDVSELTGFPEM 60 +APGQLALFSVSDKTGLVEFARNLTALGLNLVASGGTAKALRDAGLAVRDVSELTGFPEM Sbjct: 10 LAPGQLALFSVSDKTGLVEFARNLTALGLNLVASGGTAKALRDAGLAVRDVSELTGFPEM 69 Query: 61 LGGRVKTLHPAVHAGILARNIPEDNADMARLDFNLIRVVACNLYPFVKTVASPGVTVEEA 120 LGGRVKTLHPAVHAGILARNIPEDNADMARLDFNLIRVVACNLYPFVKTVASPGVTVEEA Sbjct: 70 LGGRVKTLHPAVHAGILARNIPEDNADMARLDFNLIRVVACNLYPFVKTVASPGVTVEEA 129 Query: 121 VEQIDIGGVTLLRAAAKNHARVTVVCEPEDYVVVSTEMQSSESKDTSLETRRQLALKAFT 180 VEQIDIGGVTLLRAAAKNHARVTVVCEPEDYVVVSTEMQSSESKDTSLETRRQLALKAFT Sbjct: 130 VEQIDIGGVTLLRAAAKNHARVTVVCEPEDYVVVSTEMQSSESKDTSLETRRQLALKAFT 189 Query: 181 HTAQYDEAISDYFRKQYSKGVSQMPLRYGMNPHQTPAQLYTLQPKLPITVLNGAPGFINL 240 HTAQYDEAISDYFRKQYSKGVSQMPLRYGMNPHQTPAQLYTLQPKLPITVLNGAPGFINL Sbjct: 190 HTAQYDEAISDYFRKQYSKGVSQMPLRYGMNPHQTPAQLYTLQPKLPITVLNGAPGFINL 249 Query: 241 CDALNAWQLVKELKEALGIPAAASFKHVSPAGAAVGIPLSEDEAKVCMVYDLYKTLTPIS 300 CDALNAWQLVKELKEALGIPAAASFKHVSPAGAAVGIPLSEDEAKVCMVYDLYKTLTPIS Sbjct: 250 CDALNAWQLVKELKEALGIPAAASFKHVSPAGAAVGIPLSEDEAKVCMVYDLYKTLTPIS 309 Query: 301 AAYARARGADRMSSFGDFVALSDVCDVPTAKIISREVSDGIIAPGYEEEALTILSKKKNG 360 AAYARARGADRMSSFGDFVALSDVCDVPTAKIISREVSDGIIAPGYEEEALTILSKKKNG Sbjct: 310 AAYARARGADRMSSFGDFVALSDVCDVPTAKIISREVSDGIIAPGYEEEALTILSKKKNG 369 Query: 361 NYCVLQMDQSYKPDENEVRTLFGLHLSQKRNNGVVDKSLFSNVVTKNKDLPESALRDLIV 420 NYCVLQMDQSYKPDENEVRTLFGLHLSQKRNNGVVDKSLFSNVVTKNKDLPESALRDLIV Sbjct: 370 NYCVLQMDQSYKPDENEVRTLFGLHLSQKRNNGVVDKSLFSNVVTKNKDLPESALRDLIV 429 Query: 421 ATIAVKYTQSNSVCYAKNGQVIGIGAGQQSRIHCTRLAGDKANYWWLRHHPQVLSMKFKT 480 ATIAVKYTQSNSVCYAKNGQVIGIGAGQQSRIHCTRLAGDKANYWWLRHHPQVLSMKFKT Sbjct: 430 ATIAVKYTQSNSVCYAKNGQVIGIGAGQQSRIHCTRLAGDKANYWWLRHHPQVLSMKFKT 489 Query: 481 GVKRAEISNAIDQYVTGTIGEDEDLIKWKALFEEVPELLTEAEKKEWVEKLTEVSISSDA 540 GVKRAEISNAIDQYVTGTIGEDEDLIKWKALFEEVPELLTEAEKKEWVEKLTEVSISSDA Sbjct: 490 GVKRAEISNAIDQYVTGTIGEDEDLIKWKALFEEVPELLTEAEKKEWVEKLTEVSISSDA 549 Query: 541 FFPFRDNVDRAKRSGVAYIAAPSGSAADKVVIEACDELGIILAHTNLRLFHH 592 FFPFRDNVDRAKRSGVAYIAAPSGSAADKVVIEACDELGIILAHTNLRLFHH Sbjct: 550 FFPFRDNVDRAKRSGVAYIAAPSGSAADKVVIEACDELGIILAHTNLRLFHH 601 >1M9N-A nrPDB Length = 613 Score = 1059 bits (2739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 493/588 (83%), Positives = 549/588 (93%) Query: 5 QLALFSVSDKTGLVEFARNLTALGLNLVASGGTAKALRDAGLAVRDVSELTGFPEMLGGR 64 QLAL SVS+K GLVEFAR+L ALGL L+ASGGTA ALRDAGL VRDVS+LTGFPEMLGGR Sbjct: 26 QLALLSVSEKAGLVEFARSLNALGLGLIASGGTATALRDAGLPVRDVSDLTGFPEMLGGR 85 Query: 65 VKTLHPAVHAGILARNIPEDNADMARLDFNLIRVVACNLYPFVKTVASPGVTVEEAVEQI 124 VKTLHPAVHAGILARNIPEDNADM + DF+L+RVV CNLYPFVKTV+SPGVTV EAVE+I Sbjct: 86 VKTLHPAVHAGILARNIPEDNADMNKQDFSLVRVVVCNLYPFVKTVSSPGVTVPEAVEKI 145 Query: 125 DIGGVTLLRAAAKNHARVTVVCEPEDYVVVSTEMQSSESKDTSLETRRQLALKAFTHTAQ 184 DIGGV LLRAAAKNHARVTVVC+P DY V+ EM +S+ KDTS+ETRR LALKAFTHTAQ Sbjct: 146 DIGGVALLRAAAKNHARVTVVCDPADYSSVAKEMAASKDKDTSVETRRHLALKAFTHTAQ 205 Query: 185 YDEAISDYFRKQYSKGVSQMPLRYGMNPHQTPAQLYTLQPKLPITVLNGAPGFINLCDAL 244 YD AISDYFRK+YSKGVSQ+PLRYGMNPHQ+PAQLYT +PKLP+TV+NG+PGFINLCDAL Sbjct: 206 YDAAISDYFRKEYSKGVSQLPLRYGMNPHQSPAQLYTTRPKLPLTVVNGSPGFINLCDAL 265 Query: 245 NAWQLVKELKEALGIPAAASFKHVSPAGAAVGIPLSEDEAKVCMVYDLYKTLTPISAAYA 304 NAWQLVKELK+ALGIPAAASFKHVSPAGAAVGIPLSE+EA+VCMV+DL+KTLTP+++AYA Sbjct: 266 NAWQLVKELKQALGIPAAASFKHVSPAGAAVGIPLSEEEAQVCMVHDLHKTLTPLASAYA 325 Query: 305 RARGADRMSSFGDFVALSDVCDVPTAKIISREVSDGIIAPGYEEEALTILSKKKNGNYCV 364 R+RGADRMSSFGDF+ALSD+CDVPTAKIISREVSDG++APGYEEEAL ILSKKKNG YCV Sbjct: 326 RSRGADRMSSFGDFIALSDICDVPTAKIISREVSDGVVAPGYEEEALKILSKKKNGGYCV 385 Query: 365 LQMDQSYKPDENEVRTLFGLHLSQKRNNGVVDKSLFSNVVTKNKDLPESALRDLIVATIA 424 LQMD +Y+PD+NE+RTL+GL L QKRNN V+D+SLF N+VTKNK LPESA+RDLIVA+IA Sbjct: 386 LQMDPNYEPDDNEIRTLYGLQLMQKRNNAVIDRSLFKNIVTKNKTLPESAVRDLIVASIA 445 Query: 425 VKYTQSNSVCYAKNGQVIGIGAGQQSRIHCTRLAGDKANYWWLRHHPQVLSMKFKTGVKR 484 VKYTQSNSVCYAK+GQVIGIGAGQQSRIHCTRLAGDKAN WWLRHHP+VLSMKFK GVKR Sbjct: 446 VKYTQSNSVCYAKDGQVIGIGAGQQSRIHCTRLAGDKANSWWLRHHPRVLSMKFKAGVKR 505 Query: 485 AEISNAIDQYVTGTIGEDEDLIKWKALFEEVPELLTEAEKKEWVEKLTEVSISSDAFFPF 544 AE+SNAIDQYVTGTIGEDEDL+KW+A+FEEVP LTEAEKK+W+ KLT VS+SSDAFFPF Sbjct: 506 AEVSNAIDQYVTGTIGEDEDLVKWQAMFEEVPAQLTEAEKKQWIAKLTAVSLSSDAFFPF 565 Query: 545 RDNVDRAKRSGVAYIAAPSGSAADKVVIEACDELGIILAHTNLRLFHH 592 RDNVDRAKR GV +I APSGSAAD+VVIEAC+ELGI L HTNLRLFHH Sbjct: 566 RDNVDRAKRIGVQFIVAPSGSAADEVVIEACNELGITLIHTNLRLFHH 613 >4A1O-A nrPDB Length = 523 Score = 221 bits (563), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 164/485 (33%), Positives = 254/485 (52%), Gaps = 58/485 (11%) Query: 3 PGQLALFSVSDKTGLVEFARNLTALGLNLVASGGTAKALRDAGLAVRDVSELTGFPEMLG 62 P + AL SV DKTGLV+ A+ L+A G+ ++++G TAK + D G+ V V +LTGFPE+L Sbjct: 9 PIRRALISVYDKTGLVDLAQGLSAAGVEIISTGSTAKTIADTGIPVTPVEQLTGFPEVLD 68 Query: 63 GRVKTLHPAVHAGILAR-NIPEDNADMARLDFNLIRVVACNLYPFVKTVASPGVTVEEAV 121 GRVKTLHP VHAG+LA E A + +L +V NLYPF +TV S G +V++ V Sbjct: 69 GRVKTLHPRVHAGLLADLRKSEHAAALEQLGIEAFELVVVNLYPFSQTVES-GASVDDCV 127 Query: 122 EQIDIGGVTLLRAAAKNHARVTVVCEPEDYVVVSTEMQSSESKDTSLETRRQLALKAFTH 181 EQIDIGG ++RAAAKNH VV +P Y V +++ +L R++LA AF H Sbjct: 128 EQIDIGGPAMVRAAAKNHPSAAVVTDPLGYHGVLAALRAG---GFTLAERKRLASLAFQH 184 Query: 182 TAQYDEAISDYFRKQYS--KGVSQMP------------LRYGMNPHQTPAQLY---TLQP 224 A+YD A++ + ++ + V+ P LRYG NPHQ A LY T P Sbjct: 185 IAEYDIAVASWMQQTLAPEHPVAAFPQWFGRSWRRVAMLRYGENPHQQ-AALYGDPTAWP 243 Query: 225 KLP-ITVLNGAP-GFINLCDALNAWQLVKELKEALGIPAAASFKHVSPAGAAVGIPLSED 282 L L+G + N DA AW+ + ++ A KH +P G A+ Sbjct: 244 GLAQAEQLHGKDMSYNNFTDADAAWRAAFDHEQTC----VAIIKHANPCGIAI------- 292 Query: 283 EAKVCMVYDLYKTLTPISAAYARARGADRMSSFGDFVALSDVCDVPTAKIISREVSDGII 342 + ++ A+ +A D +S++G +A + V A+ +S ++ I+ Sbjct: 293 ------------SSVSVADAHRKAHECDPLSAYGGVIAANTEVSVEMAEYVSTIFTEVIV 340 Query: 343 APGYEEEALTILSKKKNGNYCVLQMDQSYKP--DENEVRTLFGLHLSQKRN--NGVVDKS 398 APGY AL +L++KKN +++ + +P +E+R + G L Q+ + + D Sbjct: 341 APGYAPGALDVLARKKN-----IRVLVAAEPLAGGSELRPISGGLLIQQSDQLDAHGDNP 395 Query: 399 LFSNVVTKNKDLPESALRDLIVATIAVKYTQSNSVCYAKNGQVIGIGAGQQSRIHCTRLA 458 + T + P + L DL+ A A + +SN++ A +G +G+G GQ +R+ RLA Sbjct: 396 ANWTLATGSPADPAT-LTDLVFAWRACRAVKSNAIVIAADGATVGVGMGQVNRVDAARLA 454 Query: 459 GDKAN 463 ++ Sbjct: 455 VERGG 459 Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 34/64 (53%) Query: 529 EKLTEVSISSDAFFPFRDNVDRAKRSGVAYIAAPSGSAADKVVIEACDELGIILAHTNLR 588 E++ +SDAFFPF D ++ +GV + P GS D+ V EA + G+ L T R Sbjct: 460 ERVRGAVAASDAFFPFPDGLETLAAAGVTAVVHPGGSVRDEEVTEAAAKAGVTLYLTGAR 519 Query: 589 LFHH 592 F H Sbjct: 520 HFAH 523 >4EHI-A nrPDB Length = 534 Score = 213 bits (543), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 152/461 (32%), Positives = 231/461 (50%), Gaps = 46/461 (9%) Query: 7 ALFSVSDKTGLVEFARNLTALGLNLVASGGTAKALRDAGLAVRDVSELTGFPEMLGGRVK 66 AL SVSDK G+VEF + L LG ++++GGT K L++ G+ V +VS+ T PE+ GRVK Sbjct: 27 ALLSVSDKEGIVEFGKELENLGFEILSTGGTFKLLKENGIKVIEVSDFTKSPELFEGRVK 86 Query: 67 TLHPAVHAGILARNIPEDNADMARLDFNL-IRVVACNLYPFVKTVASPGVTVEEAVEQID 125 TLHP +H GIL + E++ A+ + L I +V NLYPF KT +E +E ID Sbjct: 87 TLHPKIHGGILHKRSDENHIKQAKENEILGIDLVCVNLYPFKKTTIMSD-DFDEIIENID 145 Query: 126 IGGVTLLRAAAKNHARVTVVCEPEDYVVVSTEMQSSESKDTSLETRRQLALKAFTHTAQY 185 IGG ++R+AAKN+ V V+C+P DY V ++ ++ + R L +KA+ HTA Y Sbjct: 146 IGGPAMIRSAAKNYKDVMVLCDPLDYEKVIETLKKGQNDEN---FRLNLMIKAYEHTANY 202 Query: 186 DEAISDYFRKQYSKG-------VSQ--MPLRYGMNPHQTPAQLYTLQPKLP--ITVLNGA 234 D I++Y ++++ G V Q +YG NPHQ A LY L G Sbjct: 203 DAYIANYMNERFNGGFGASKFIVGQKVFDTKYGENPHQKGA-LYEFDAFFSANFKALKGE 261 Query: 235 PGFINLCDALNAWQLVKELKEALGIPAAASFKHVSPAGAAVGIPLSEDEAKVCMVYDLYK 294 F NL D A L +A PA A KH +P G A+ L + Sbjct: 262 ASFNNLTDINAALNLASSFDKA---PAIAIVKHGNPCGFAIKENLVQ------------- 305 Query: 295 TLTPISAAYARARGADRMSSFGDFVALSDVCDVPTAKIISREVSDGIIAPGYEEEALTIL 354 +Y A D +S++G VA++ D A I+ + IIA +E+AL + Sbjct: 306 -------SYIHALKCDSVSAYGGVVAINGTLDEALANKINEIYVEVIIAANVDEKALAVF 358 Query: 355 SKKKNGNYCVLQ---MDQSYKPDENEVRTLFGLHLSQKRNNGVVDKSLFSNVVTKNKDLP 411 KK + + +S+ D+ + + + G + Q + V + L + + ++ Sbjct: 359 EGKKRIKIFTQESPFLIRSF--DKYDFKHIDGGFVYQNSDE-VGEDELKNAKLMSQREAS 415 Query: 412 ESALRDLIVATIAVKYTQSNSVCYAKNGQVIGIGAGQQSRI 452 + L+DL +A +T+SN+V Y KNG ++ IG G SRI Sbjct: 416 KEELKDLEIAMKIAAFTKSNNVVYVKNGAMVAIGMGMTSRI 456 Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 37/57 (64%) Query: 536 ISSDAFFPFRDNVDRAKRSGVAYIAAPSGSAADKVVIEACDELGIILAHTNLRLFHH 592 ++S+AFFPFRD++D A + GV I P GS D V++A DE G+ L T +R F H Sbjct: 478 LASEAFFPFRDSIDEASKVGVKAIVEPGGSIRDDEVVKAADEYGMALYFTGVRHFLH 534 >1ZCZ-A nrPDB Length = 464 Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 156/471 (33%), Positives = 219/471 (46%), Gaps = 98/471 (20%) Query: 8 LFSVSDKTGLVEFARNLTALGLNLVASGGTAKALRDAGLAVRDVSELTGFPEMLGGRVKT 67 L S+ +K ++ R L G + AS GTAK L+ G+ DVS +TGF +LGG VKT Sbjct: 17 LVSLYEKEKYLDILRELHEKGWEIWASSGTAKFLKSNGIEANDVSTITGFENLLGGLVKT 76 Query: 68 LHPAVHAGILARNIPEDNADMARLDFNLIRVVACNLYPFVKTVASPGVTVEEAVEQIDIG 127 LHP + AGIL PE D VV +LYP P IDIG Sbjct: 77 LHPEIFAGILG---PEPRWD----------VVFVDLYP------PP---------DIDIG 108 Query: 128 GVTLLRAAAKNHARVTVVCEPEDYVVVSTEMQSSESKDTSLETRRQLALKAFTHTAQYDE 187 GV LLRAAAKN +V + E + ++ E+ ETR+ LA F T+ YD Sbjct: 109 GVALLRAAAKNWKKVKPAFDMET-LKLAIEIDDE-------ETRKYLAGMTFAFTSVYDS 160 Query: 188 AISDYFRKQYSKGVS------QMPLRYGMNPHQTPAQLYTLQPKLPITVLNGAPGFINLC 241 ++ Q+ +G+S + LRYG NPH+ A +Y +P I F N+ Sbjct: 161 IRAN----QFVEGISLAFKREDLQLRYGENPHEK-AFVYG-KPAFEILHEGKTISFNNIL 214 Query: 242 DALNAWQLVKELKEALGIPAAASFKHVSPAGAAVGIPLSEDEAKVCMVYDLYKTLTPISA 301 DA NAW + K L A KH SP GAA+G ED+ ++ Sbjct: 215 DAENAWFMAKNLPRM----GAVVVKHQSPCGAAIG----EDKVEIV-------------- 252 Query: 302 AYARARGADRMSSFGDFVALSDVCDVPTAKIISREVSDGIIAPGYEEEALTILSKK---- 357 +A AD SSFG +A++ D AK + + + + I+AP + +EA+ +LSKK Sbjct: 253 --KKAIEADDESSFGGILAVNFEMDEEVAKSLKKYL-EVIVAPSFTQEAIEVLSKKKVRL 309 Query: 358 -KNGNYCVLQMDQSYKPDENEVRTLFGLHLSQKRNNGVVDKSLFSNVVTKNKDLPESALR 416 K G+Y ++ L LS+++ + F VV + L E L Sbjct: 310 LKPGDYASWAGKMAFG----------SLVLSERK----YPEGNFELVV--GEPLSEKELE 353 Query: 417 DLIVATIAVKYTQSNSVCYAKNGQVIGIGAGQQSRIH----CTRLAGDKAN 463 DL A V+ +SN+V AK+G +GIG+GQ SR T +AG+KA Sbjct: 354 DLEFAYRVVEGAKSNAVLIAKDGVTVGIGSGQPSRKRAAWIATVMAGEKAK 404 Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 36/64 (56%) Query: 529 EKLTEVSISSDAFFPFRDNVDRAKRSGVAYIAAPSGSAADKVVIEACDELGIILAHTNLR 588 EK +SDAFFPF D+++ ++GV + AP GS D+ VIE ELGI R Sbjct: 401 EKAKGAVAASDAFFPFPDSLEILAQAGVKAVVAPLGSIRDEEVIEKARELGITFYKAPSR 460 Query: 589 LFHH 592 +F H Sbjct: 461 VFRH 464 >5VBA-A nrPDB Length = 437 Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 47/123 (38%), Gaps = 25/123 (20%) Query: 43 DAGLAVRDVSELTGFPEMLGGRVKTLHPAVHAGILARNIPEDNA-----DMARLDFNLIR 97 D L + D L FP LG R NIP+D+ D R D Sbjct: 190 DGMLVLADRLHLVDFPVALGIR--------------PNIPQDDLREIVWDQVRRDLTAQG 235 Query: 98 VVACNLYP------FVKTVASPGVTVEEAVEQIDIGGVTLLRAAAKNHARVTVVCEPEDY 151 V+ N YP V T++ P T+E + D+GGV + A+ R + D Sbjct: 236 VLDHNGYPHPTVASMVDTLSRPDRTLEARWWRRDVGGVMVRFVVARKDDRHVIAVRNGDL 295 Query: 152 VVV 154 +V+ Sbjct: 296 LVL 298 >5VFB-A nrPDB Length = 728 Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust. Identities = 16/41 (39%), Positives = 22/41 (53%) Query: 483 KRAEISNAIDQYVTGTIGEDEDLIKWKALFEEVPELLTEAE 523 KR E+ ID + G+ D + +KA EE+ LL EAE Sbjct: 59 KRDELQAKIDGWHQARAGQAHDAVAYKAFLEEIGYLLPEAE 99 >4HZ6-A nrPDB Length = 444 Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 12/55 (21%) Query: 261 AAASFKHVSPAGAAVGIPLSEDEAKVCMVYDLYKTLTPISAAYARARGADRMSSF 315 A +F+ +SPAG+ +GI L+ + T+ P+SA A A RM SF Sbjct: 203 ALQAFRALSPAGSQMGITLN------------FNTIYPVSAEPADVEAARRMHSF 245 >3BJI-A nrPDB Length = 378 Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust. Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%) Query: 237 FINLCDALNAW-QLVKELKEALGIPAAASFKHV 268 FIN+ D L +KE+KEALG P AA+ V Sbjct: 49 FINIEDLLRVHTHFLKEMKEALGTPGAANLYQV 81 >3KY9-A nrPDB Length = 587 Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust. Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%) Query: 237 FINLCDALNAW-QLVKELKEALGIPAAASFKHV 268 FIN+ D L +KE+KEALG P AA+ V Sbjct: 240 FINIEDLLRVHTHFLKEMKEALGTPGAANLYQV 272 >3MSU-A nrPDB Length = 427 Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust. Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%) Query: 358 KNGNYCVLQMDQSYKPDENEVR---TLFGLHLSQKRN 391 +N Y + D+SYKPDE ++ T+F LH ++N Sbjct: 201 ENFLYMMFADDESYKPDELHIKAMDTIFMLHADHEQN 237 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 5UY8-A nrPDB 991 0.0 1M9N-A nrPDB 958 0.0 4EHI-A nrPDB 523 e-149 4A1O-A nrPDB 514 e-146 1ZCZ-A nrPDB 422 e-118 Sequences not found previously or not previously below threshold: 5VFB-A nrPDB 33 0.38 2G6V-A nrPDB 32 1.0 4AMG-A nrPDB 31 1.3 1XDW-A nrPDB 31 1.7 6H3L-A nrPDB 30 3.7 4YWJ-A nrPDB 29 5.0 4MPT-A nrPDB 29 8.3 CONVERGED! >5UY8-A nrPDB Length = 601 Score = 991 bits (2561), Expect = 0.0, Method: Composition-based stats. Identities = 591/592 (99%), Positives = 592/592 (100%) Query: 1 MAPGQLALFSVSDKTGLVEFARNLTALGLNLVASGGTAKALRDAGLAVRDVSELTGFPEM 60 +APGQLALFSVSDKTGLVEFARNLTALGLNLVASGGTAKALRDAGLAVRDVSELTGFPEM Sbjct: 10 LAPGQLALFSVSDKTGLVEFARNLTALGLNLVASGGTAKALRDAGLAVRDVSELTGFPEM 69 Query: 61 LGGRVKTLHPAVHAGILARNIPEDNADMARLDFNLIRVVACNLYPFVKTVASPGVTVEEA 120 LGGRVKTLHPAVHAGILARNIPEDNADMARLDFNLIRVVACNLYPFVKTVASPGVTVEEA Sbjct: 70 LGGRVKTLHPAVHAGILARNIPEDNADMARLDFNLIRVVACNLYPFVKTVASPGVTVEEA 129 Query: 121 VEQIDIGGVTLLRAAAKNHARVTVVCEPEDYVVVSTEMQSSESKDTSLETRRQLALKAFT 180 VEQIDIGGVTLLRAAAKNHARVTVVCEPEDYVVVSTEMQSSESKDTSLETRRQLALKAFT Sbjct: 130 VEQIDIGGVTLLRAAAKNHARVTVVCEPEDYVVVSTEMQSSESKDTSLETRRQLALKAFT 189 Query: 181 HTAQYDEAISDYFRKQYSKGVSQMPLRYGMNPHQTPAQLYTLQPKLPITVLNGAPGFINL 240 HTAQYDEAISDYFRKQYSKGVSQMPLRYGMNPHQTPAQLYTLQPKLPITVLNGAPGFINL Sbjct: 190 HTAQYDEAISDYFRKQYSKGVSQMPLRYGMNPHQTPAQLYTLQPKLPITVLNGAPGFINL 249 Query: 241 CDALNAWQLVKELKEALGIPAAASFKHVSPAGAAVGIPLSEDEAKVCMVYDLYKTLTPIS 300 CDALNAWQLVKELKEALGIPAAASFKHVSPAGAAVGIPLSEDEAKVCMVYDLYKTLTPIS Sbjct: 250 CDALNAWQLVKELKEALGIPAAASFKHVSPAGAAVGIPLSEDEAKVCMVYDLYKTLTPIS 309 Query: 301 AAYARARGADRMSSFGDFVALSDVCDVPTAKIISREVSDGIIAPGYEEEALTILSKKKNG 360 AAYARARGADRMSSFGDFVALSDVCDVPTAKIISREVSDGIIAPGYEEEALTILSKKKNG Sbjct: 310 AAYARARGADRMSSFGDFVALSDVCDVPTAKIISREVSDGIIAPGYEEEALTILSKKKNG 369 Query: 361 NYCVLQMDQSYKPDENEVRTLFGLHLSQKRNNGVVDKSLFSNVVTKNKDLPESALRDLIV 420 NYCVLQMDQSYKPDENEVRTLFGLHLSQKRNNGVVDKSLFSNVVTKNKDLPESALRDLIV Sbjct: 370 NYCVLQMDQSYKPDENEVRTLFGLHLSQKRNNGVVDKSLFSNVVTKNKDLPESALRDLIV 429 Query: 421 ATIAVKYTQSNSVCYAKNGQVIGIGAGQQSRIHCTRLAGDKANYWWLRHHPQVLSMKFKT 480 ATIAVKYTQSNSVCYAKNGQVIGIGAGQQSRIHCTRLAGDKANYWWLRHHPQVLSMKFKT Sbjct: 430 ATIAVKYTQSNSVCYAKNGQVIGIGAGQQSRIHCTRLAGDKANYWWLRHHPQVLSMKFKT 489 Query: 481 GVKRAEISNAIDQYVTGTIGEDEDLIKWKALFEEVPELLTEAEKKEWVEKLTEVSISSDA 540 GVKRAEISNAIDQYVTGTIGEDEDLIKWKALFEEVPELLTEAEKKEWVEKLTEVSISSDA Sbjct: 490 GVKRAEISNAIDQYVTGTIGEDEDLIKWKALFEEVPELLTEAEKKEWVEKLTEVSISSDA 549 Query: 541 FFPFRDNVDRAKRSGVAYIAAPSGSAADKVVIEACDELGIILAHTNLRLFHH 592 FFPFRDNVDRAKRSGVAYIAAPSGSAADKVVIEACDELGIILAHTNLRLFHH Sbjct: 550 FFPFRDNVDRAKRSGVAYIAAPSGSAADKVVIEACDELGIILAHTNLRLFHH 601 >1M9N-A nrPDB Length = 613 Score = 958 bits (2477), Expect = 0.0, Method: Composition-based stats. Identities = 493/588 (83%), Positives = 549/588 (93%) Query: 5 QLALFSVSDKTGLVEFARNLTALGLNLVASGGTAKALRDAGLAVRDVSELTGFPEMLGGR 64 QLAL SVS+K GLVEFAR+L ALGL L+ASGGTA ALRDAGL VRDVS+LTGFPEMLGGR Sbjct: 26 QLALLSVSEKAGLVEFARSLNALGLGLIASGGTATALRDAGLPVRDVSDLTGFPEMLGGR 85 Query: 65 VKTLHPAVHAGILARNIPEDNADMARLDFNLIRVVACNLYPFVKTVASPGVTVEEAVEQI 124 VKTLHPAVHAGILARNIPEDNADM + DF+L+RVV CNLYPFVKTV+SPGVTV EAVE+I Sbjct: 86 VKTLHPAVHAGILARNIPEDNADMNKQDFSLVRVVVCNLYPFVKTVSSPGVTVPEAVEKI 145 Query: 125 DIGGVTLLRAAAKNHARVTVVCEPEDYVVVSTEMQSSESKDTSLETRRQLALKAFTHTAQ 184 DIGGV LLRAAAKNHARVTVVC+P DY V+ EM +S+ KDTS+ETRR LALKAFTHTAQ Sbjct: 146 DIGGVALLRAAAKNHARVTVVCDPADYSSVAKEMAASKDKDTSVETRRHLALKAFTHTAQ 205 Query: 185 YDEAISDYFRKQYSKGVSQMPLRYGMNPHQTPAQLYTLQPKLPITVLNGAPGFINLCDAL 244 YD AISDYFRK+YSKGVSQ+PLRYGMNPHQ+PAQLYT +PKLP+TV+NG+PGFINLCDAL Sbjct: 206 YDAAISDYFRKEYSKGVSQLPLRYGMNPHQSPAQLYTTRPKLPLTVVNGSPGFINLCDAL 265 Query: 245 NAWQLVKELKEALGIPAAASFKHVSPAGAAVGIPLSEDEAKVCMVYDLYKTLTPISAAYA 304 NAWQLVKELK+ALGIPAAASFKHVSPAGAAVGIPLSE+EA+VCMV+DL+KTLTP+++AYA Sbjct: 266 NAWQLVKELKQALGIPAAASFKHVSPAGAAVGIPLSEEEAQVCMVHDLHKTLTPLASAYA 325 Query: 305 RARGADRMSSFGDFVALSDVCDVPTAKIISREVSDGIIAPGYEEEALTILSKKKNGNYCV 364 R+RGADRMSSFGDF+ALSD+CDVPTAKIISREVSDG++APGYEEEAL ILSKKKNG YCV Sbjct: 326 RSRGADRMSSFGDFIALSDICDVPTAKIISREVSDGVVAPGYEEEALKILSKKKNGGYCV 385 Query: 365 LQMDQSYKPDENEVRTLFGLHLSQKRNNGVVDKSLFSNVVTKNKDLPESALRDLIVATIA 424 LQMD +Y+PD+NE+RTL+GL L QKRNN V+D+SLF N+VTKNK LPESA+RDLIVA+IA Sbjct: 386 LQMDPNYEPDDNEIRTLYGLQLMQKRNNAVIDRSLFKNIVTKNKTLPESAVRDLIVASIA 445 Query: 425 VKYTQSNSVCYAKNGQVIGIGAGQQSRIHCTRLAGDKANYWWLRHHPQVLSMKFKTGVKR 484 VKYTQSNSVCYAK+GQVIGIGAGQQSRIHCTRLAGDKAN WWLRHHP+VLSMKFK GVKR Sbjct: 446 VKYTQSNSVCYAKDGQVIGIGAGQQSRIHCTRLAGDKANSWWLRHHPRVLSMKFKAGVKR 505 Query: 485 AEISNAIDQYVTGTIGEDEDLIKWKALFEEVPELLTEAEKKEWVEKLTEVSISSDAFFPF 544 AE+SNAIDQYVTGTIGEDEDL+KW+A+FEEVP LTEAEKK+W+ KLT VS+SSDAFFPF Sbjct: 506 AEVSNAIDQYVTGTIGEDEDLVKWQAMFEEVPAQLTEAEKKQWIAKLTAVSLSSDAFFPF 565 Query: 545 RDNVDRAKRSGVAYIAAPSGSAADKVVIEACDELGIILAHTNLRLFHH 592 RDNVDRAKR GV +I APSGSAAD+VVIEAC+ELGI L HTNLRLFHH Sbjct: 566 RDNVDRAKRIGVQFIVAPSGSAADEVVIEACNELGITLIHTNLRLFHH 613 >4EHI-A nrPDB Length = 534 Score = 523 bits (1347), Expect = e-149, Method: Composition-based stats. Identities = 150/463 (32%), Positives = 229/463 (49%), Gaps = 46/463 (9%) Query: 6 LALFSVSDKTGLVEFARNLTALGLNLVASGGTAKALRDAGLAVRDVSELTGFPEMLGGRV 65 AL SVSDK G+VEF + L LG ++++GGT K L++ G+ V +VS+ T PE+ GRV Sbjct: 26 RALLSVSDKEGIVEFGKELENLGFEILSTGGTFKLLKENGIKVIEVSDFTKSPELFEGRV 85 Query: 66 KTLHPAVHAGILARNIPEDNADMARLDFNL-IRVVACNLYPFVKTVASPGVTVEEAVEQI 124 KTLHP +H GIL + E++ A+ + L I +V NLYPF KT +E +E I Sbjct: 86 KTLHPKIHGGILHKRSDENHIKQAKENEILGIDLVCVNLYPFKKTTIMSD-DFDEIIENI 144 Query: 125 DIGGVTLLRAAAKNHARVTVVCEPEDYVVVSTEMQSSESKDTSLETRRQLALKAFTHTAQ 184 DIGG ++R+AAKN+ V V+C+P DY V ++ ++ + R L +KA+ HTA Sbjct: 145 DIGGPAMIRSAAKNYKDVMVLCDPLDYEKVIETLKKGQNDEN---FRLNLMIKAYEHTAN 201 Query: 185 YDEAISDYFRKQYSKGVSQ---------MPLRYGMNPHQTPAQLYTLQPKLP--ITVLNG 233 YD I++Y ++++ G +YG NPHQ A LY L G Sbjct: 202 YDAYIANYMNERFNGGFGASKFIVGQKVFDTKYGENPHQKGA-LYEFDAFFSANFKALKG 260 Query: 234 APGFINLCDALNAWQLVKELKEALGIPAAASFKHVSPAGAAVGIPLSEDEAKVCMVYDLY 293 F NL D A L +A PA A KH +P G A+ L + Sbjct: 261 EASFNNLTDINAALNLASSFDKA---PAIAIVKHGNPCGFAIKENLVQ------------ 305 Query: 294 KTLTPISAAYARARGADRMSSFGDFVALSDVCDVPTAKIISREVSDGIIAPGYEEEALTI 353 +Y A D +S++G VA++ D A I+ + IIA +E+AL + Sbjct: 306 --------SYIHALKCDSVSAYGGVVAINGTLDEALANKINEIYVEVIIAANVDEKALAV 357 Query: 354 LSKKKNGNYCVLQ---MDQSYKPDENEVRTLFGLHLSQKRNNGVVDKSLFSNVVTKNKDL 410 KK + + +S+ D+ + + + G + Q + V + L + + ++ Sbjct: 358 FEGKKRIKIFTQESPFLIRSF--DKYDFKHIDGGFVYQNSDE-VGEDELKNAKLMSQREA 414 Query: 411 PESALRDLIVATIAVKYTQSNSVCYAKNGQVIGIGAGQQSRIH 453 + L+DL +A +T+SN+V Y KNG ++ IG G SRI Sbjct: 415 SKEELKDLEIAMKIAAFTKSNNVVYVKNGAMVAIGMGMTSRID 457 Score = 102 bits (253), Expect = 5e-22, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 38/62 (61%) Query: 531 LTEVSISSDAFFPFRDNVDRAKRSGVAYIAAPSGSAADKVVIEACDELGIILAHTNLRLF 590 L ++S+AFFPFRD++D A + GV I P GS D V++A DE G+ L T +R F Sbjct: 473 LQGCVLASEAFFPFRDSIDEASKVGVKAIVEPGGSIRDDEVVKAADEYGMALYFTGVRHF 532 Query: 591 HH 592 H Sbjct: 533 LH 534 >4A1O-A nrPDB Length = 523 Score = 514 bits (1324), Expect = e-146, Method: Composition-based stats. Identities = 164/485 (33%), Positives = 254/485 (52%), Gaps = 58/485 (11%) Query: 3 PGQLALFSVSDKTGLVEFARNLTALGLNLVASGGTAKALRDAGLAVRDVSELTGFPEMLG 62 P + AL SV DKTGLV+ A+ L+A G+ ++++G TAK + D G+ V V +LTGFPE+L Sbjct: 9 PIRRALISVYDKTGLVDLAQGLSAAGVEIISTGSTAKTIADTGIPVTPVEQLTGFPEVLD 68 Query: 63 GRVKTLHPAVHAGILAR-NIPEDNADMARLDFNLIRVVACNLYPFVKTVASPGVTVEEAV 121 GRVKTLHP VHAG+LA E A + +L +V NLYPF +TV S G +V++ V Sbjct: 69 GRVKTLHPRVHAGLLADLRKSEHAAALEQLGIEAFELVVVNLYPFSQTVES-GASVDDCV 127 Query: 122 EQIDIGGVTLLRAAAKNHARVTVVCEPEDYVVVSTEMQSSESKDTSLETRRQLALKAFTH 181 EQIDIGG ++RAAAKNH VV +P Y V +++ +L R++LA AF H Sbjct: 128 EQIDIGGPAMVRAAAKNHPSAAVVTDPLGYHGVLAALRAG---GFTLAERKRLASLAFQH 184 Query: 182 TAQYDEAISDYFRKQYS--KGVSQMP------------LRYGMNPHQTPAQLY---TLQP 224 A+YD A++ + ++ + V+ P LRYG NPHQ A LY T P Sbjct: 185 IAEYDIAVASWMQQTLAPEHPVAAFPQWFGRSWRRVAMLRYGENPHQQ-AALYGDPTAWP 243 Query: 225 KLP-ITVLNGAP-GFINLCDALNAWQLVKELKEALGIPAAASFKHVSPAGAAVGIPLSED 282 L L+G + N DA AW+ + ++ A KH +P G A+ Sbjct: 244 GLAQAEQLHGKDMSYNNFTDADAAWRAAFDHEQTC----VAIIKHANPCGIAI------- 292 Query: 283 EAKVCMVYDLYKTLTPISAAYARARGADRMSSFGDFVALSDVCDVPTAKIISREVSDGII 342 + ++ A+ +A D +S++G +A + V A+ +S ++ I+ Sbjct: 293 ------------SSVSVADAHRKAHECDPLSAYGGVIAANTEVSVEMAEYVSTIFTEVIV 340 Query: 343 APGYEEEALTILSKKKNGNYCVLQMDQSYKP--DENEVRTLFGLHLSQKRN--NGVVDKS 398 APGY AL +L++KKN +++ + +P +E+R + G L Q+ + + D Sbjct: 341 APGYAPGALDVLARKKN-----IRVLVAAEPLAGGSELRPISGGLLIQQSDQLDAHGDNP 395 Query: 399 LFSNVVTKNKDLPESALRDLIVATIAVKYTQSNSVCYAKNGQVIGIGAGQQSRIHCTRLA 458 + T + P + L DL+ A A + +SN++ A +G +G+G GQ +R+ RLA Sbjct: 396 ANWTLATGSPADPAT-LTDLVFAWRACRAVKSNAIVIAADGATVGVGMGQVNRVDAARLA 454 Query: 459 GDKAN 463 ++ Sbjct: 455 VERGG 459 Score = 102 bits (253), Expect = 6e-22, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 34/64 (53%) Query: 529 EKLTEVSISSDAFFPFRDNVDRAKRSGVAYIAAPSGSAADKVVIEACDELGIILAHTNLR 588 E++ +SDAFFPF D ++ +GV + P GS D+ V EA + G+ L T R Sbjct: 460 ERVRGAVAASDAFFPFPDGLETLAAAGVTAVVHPGGSVRDEEVTEAAAKAGVTLYLTGAR 519 Query: 589 LFHH 592 F H Sbjct: 520 HFAH 523 >1ZCZ-A nrPDB Length = 464 Score = 422 bits (1085), Expect = e-118, Method: Composition-based stats. Identities = 156/474 (32%), Positives = 220/474 (46%), Gaps = 98/474 (20%) Query: 5 QLALFSVSDKTGLVEFARNLTALGLNLVASGGTAKALRDAGLAVRDVSELTGFPEMLGGR 64 + L S+ +K ++ R L G + AS GTAK L+ G+ DVS +TGF +LGG Sbjct: 14 KRILVSLYEKEKYLDILRELHEKGWEIWASSGTAKFLKSNGIEANDVSTITGFENLLGGL 73 Query: 65 VKTLHPAVHAGILARNIPEDNADMARLDFNLIRVVACNLYPFVKTVASPGVTVEEAVEQI 124 VKTLHP + AGIL PE D VV +LYP P I Sbjct: 74 VKTLHPEIFAGILG---PEPRWD----------VVFVDLYP------PP---------DI 105 Query: 125 DIGGVTLLRAAAKNHARVTVVCEPEDYVVVSTEMQSSESKDTSLETRRQLALKAFTHTAQ 184 DIGGV LLRAAAKN +V + E + ++ E+ ETR+ LA F T+ Sbjct: 106 DIGGVALLRAAAKNWKKVKPAFDMET-LKLAIEIDDE-------ETRKYLAGMTFAFTSV 157 Query: 185 YDEAISDYFRKQYSKGVS------QMPLRYGMNPHQTPAQLYTLQPKLPITVLNGAPGFI 238 YD ++ Q+ +G+S + LRYG NPH+ A +Y +P I F Sbjct: 158 YDSIRAN----QFVEGISLAFKREDLQLRYGENPHEK-AFVYG-KPAFEILHEGKTISFN 211 Query: 239 NLCDALNAWQLVKELKEALGIPAAASFKHVSPAGAAVGIPLSEDEAKVCMVYDLYKTLTP 298 N+ DA NAW + K L A KH SP GAA+G ED+ ++ Sbjct: 212 NILDAENAWFMAKNLPRM----GAVVVKHQSPCGAAIG----EDKVEIV----------- 252 Query: 299 ISAAYARARGADRMSSFGDFVALSDVCDVPTAKIISREVSDGIIAPGYEEEALTILSKK- 357 +A AD SSFG +A++ D AK + + + + I+AP + +EA+ +LSKK Sbjct: 253 -----KKAIEADDESSFGGILAVNFEMDEEVAKSLKKYL-EVIVAPSFTQEAIEVLSKKK 306 Query: 358 ----KNGNYCVLQMDQSYKPDENEVRTLFGLHLSQKRNNGVVDKSLFSNVVTKNKDLPES 413 K G+Y ++ L LS+++ + F VV + L E Sbjct: 307 VRLLKPGDYASWAGKMAFG----------SLVLSERK----YPEGNFELVV--GEPLSEK 350 Query: 414 ALRDLIVATIAVKYTQSNSVCYAKNGQVIGIGAGQQSRIH----CTRLAGDKAN 463 L DL A V+ +SN+V AK+G +GIG+GQ SR T +AG+KA Sbjct: 351 ELEDLEFAYRVVEGAKSNAVLIAKDGVTVGIGSGQPSRKRAAWIATVMAGEKAK 404 Score = 101 bits (252), Expect = 7e-22, Method: Composition-based stats. Identities = 27/64 (42%), Positives = 36/64 (56%) Query: 529 EKLTEVSISSDAFFPFRDNVDRAKRSGVAYIAAPSGSAADKVVIEACDELGIILAHTNLR 588 EK +SDAFFPF D+++ ++GV + AP GS D+ VIE ELGI R Sbjct: 401 EKAKGAVAASDAFFPFPDSLEILAQAGVKAVVAPLGSIRDEEVIEKARELGITFYKAPSR 460 Query: 589 LFHH 592 +F H Sbjct: 461 VFRH 464 >5VFB-A nrPDB Length = 728 Score = 32.9 bits (73), Expect = 0.38, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 22/41 (53%) Query: 483 KRAEISNAIDQYVTGTIGEDEDLIKWKALFEEVPELLTEAE 523 KR E+ ID + G+ D + +KA EE+ LL EAE Sbjct: 59 KRDELQAKIDGWHQARAGQAHDAVAYKAFLEEIGYLLPEAE 99 >2G6V-A nrPDB Length = 402 Score = 31.7 bits (70), Expect = 1.0, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 5/35 (14%) Query: 434 CYAKNGQVIGIG----AGQQ-SRIHCTRLAGDKAN 463 K+G+++G G AG+ + +H R+AG+KA Sbjct: 57 VIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAK 91 >4AMG-A nrPDB Length = 400 Score = 31.3 bits (69), Expect = 1.3, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Query: 18 VEFARNLTALGLNL-VASGGTAKALRDAGLAVRDVSELTGFPEML 61 V A+ L ALG + A+GG +A+ +AGL DVS + ++ Sbjct: 40 VPLAQALRALGHEVRYATGGDIRAVAEAGLCAVDVSPGVNYAKLF 84 >1XDW-A nrPDB Length = 331 Score = 30.9 bits (68), Expect = 1.7, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 2/72 (2%) Query: 515 VPELLTEAEKKEWVEKLTEVSISSDAFFPFRDNVDRAKRSGVAYIAAPSGSAADKVVIEA 574 VP+ L E E V + + F + N+D K+ GV YI + D + E Sbjct: 30 VPDYLNTKETAEMAAGFDAVILRGNCF-ANKQNLDIYKKLGVKYILTRTAGT-DHIDKEY 87 Query: 575 CDELGIILAHTN 586 ELG +A Sbjct: 88 AKELGFPMAFVP 99 >6H3L-A nrPDB Length = 643 Score = 29.8 bits (65), Expect = 3.7, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 4/70 (5%) Query: 455 TRLAGDKANYWWLRHHPQ--VLSMKFKTGVKRAEISNAIDQYVTGTIG--EDEDLIKWKA 510 +RL + Y+W RH + +L + G R+ A Y T+G E + W+ Sbjct: 156 SRLMEQEGIYYWFRHEQKRHILVLSDAYGAHRSPGGYASVPYYPPTLGHRERDHFFDWQM 215 Query: 511 LFEEVPELLT 520 E P LT Sbjct: 216 AREVQPGSLT 225 >4YWJ-A nrPDB Length = 276 Score = 29.4 bits (64), Expect = 5.0, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 64/197 (32%), Gaps = 7/197 (3%) Query: 275 VGIPLSEDEAKVCMVYDLYKTLTPISAAYARARGADRMSSFGDFVALSDVCDVPTAKIIS 334 +G+PLS D KVC +D+ T S + D + Sbjct: 63 IGVPLSGDLGKVCEEFDVLIDFTHPSVTLKNIEQCRKARRAMVIGTTGFSADEKLLLAEA 122 Query: 335 REVSDGIIAPGYEEEA---LTILSKKKN--GNYCVLQMDQSYKPDENEVRTLFGLHLSQK 389 + + A + L +L G+ +++ +++ + + + L + + Sbjct: 123 AKDIPIVFAANFSVGVNLCLKLLDTAARVLGDEVDIEIIEAHHRHKVDAPSGTALRMGEV 182 Query: 390 RNNGVVDKSLFSNVVTKNKDLPESALRDLIVAT-IAVKYTQSNSVCYAKNGQVIGIGAGQ 448 + V + A + AT A ++V +A G+ + I Sbjct: 183 VAQALGRDLQEVAVYGREGQTGARARETIGFATVRAGDVVGDHTVLFAAEGERVEITHKA 242 Query: 449 QSRIHCTRLAGDKANYW 465 SR+ R A +A W Sbjct: 243 SSRMTFARGAV-RAALW 258 >4MPT-A nrPDB Length = 380 Score = 28.6 bits (62), Expect = 8.3, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 19/48 (39%) Query: 104 YPFVKTVASPGVTVEEAVEQIDIGGVTLLRAAAKNHARVTVVCEPEDY 151 YP KT P V Q DI V + AK RV ++ E Y Sbjct: 114 YPGEKTGEKPRPNVFSFALQNDIEAVAMGEYLAKKFKRVGIIHESTAY 161 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.307 0.122 0.315 Lambda K H 0.267 0.0375 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 19,891,324 Number of Sequences: 36641 Number of extensions: 747515 Number of successful extensions: 2430 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 2369 Number of HSP's gapped (non-prelim): 31 length of query: 592 length of database: 10,336,785 effective HSP length: 103 effective length of query: 489 effective length of database: 6,562,762 effective search space: 3209190618 effective search space used: 3209190618 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 62 (28.6 bits)