BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P31386 (333 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 4D4O-A nrPDB 692 0.0 4X33-B nrPDB 689 0.0 5XGS-A nrPDB 45 6e-05 4NC4-A nrPDB 44 8e-05 5TBK-I nrPDB 43 2e-04 5HQ2-K nrPDB 36 0.029 3PAJ-A nrPDB 31 0.65 4H51-A nrPDB 30 1.0 4WB0-B nrPDB 29 2.4 4W7K-A nrPDB 28 4.8 1NBW-A nrPDB 28 5.4 1TAR-A nrPDB 28 6.4 4FZC-A nrPDB 27 8.5 >4D4O-A nrPDB Length = 427 Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/333 (100%), Positives = 333/333 (100%) Query: 1 MSCVYAFGSNGQRQLGLGHDEDMDTPQRSVPGDDGAIVRKIACGGNHSVMLTNDGNLVGC 60 MSCVYAFGSNGQRQLGLGHDEDMDTPQRSVPGDDGAIVRKIACGGNHSVMLTNDGNLVGC Sbjct: 3 MSCVYAFGSNGQRQLGLGHDEDMDTPQRSVPGDDGAIVRKIACGGNHSVMLTNDGNLVGC 62 Query: 61 GDNRRGELDSAQALRQVHDWRPVEVPAPVVDVACGWDTTVIVDADGRVWQRGGGCYEFTQ 120 GDNRRGELDSAQALRQVHDWRPVEVPAPVVDVACGWDTTVIVDADGRVWQRGGGCYEFTQ Sbjct: 63 GDNRRGELDSAQALRQVHDWRPVEVPAPVVDVACGWDTTVIVDADGRVWQRGGGCYEFTQ 122 Query: 121 QHVPLNSNDERIAVYGCFQNFVVVQGTRVYGWGSNTKCQLQEPKSRSLKEPVLVYDTGSV 180 QHVPLNSNDERIAVYGCFQNFVVVQGTRVYGWGSNTKCQLQEPKSRSLKEPVLVYDTGSV Sbjct: 123 QHVPLNSNDERIAVYGCFQNFVVVQGTRVYGWGSNTKCQLQEPKSRSLKEPVLVYDTGSV 182 Query: 181 AVDYVAMGKDFMVIVDEGGRIVHASGRLPTGFELKQQQKRHNLVVLCMWTSIHLWNARLN 240 AVDYVAMGKDFMVIVDEGGRIVHASGRLPTGFELKQQQKRHNLVVLCMWTSIHLWNARLN Sbjct: 183 AVDYVAMGKDFMVIVDEGGRIVHASGRLPTGFELKQQQKRHNLVVLCMWTSIHLWNARLN 242 Query: 241 TVESFGRGTHSQLFPQERLDFPIVGVATGSEHGILTTANQEGKSHCYNVYCWGWGEHGNC 300 TVESFGRGTHSQLFPQERLDFPIVGVATGSEHGILTTANQEGKSHCYNVYCWGWGEHGNC Sbjct: 243 TVESFGRGTHSQLFPQERLDFPIVGVATGSEHGILTTANQEGKSHCYNVYCWGWGEHGNC 302 Query: 301 GPQKGSQPGLQLVGQYSGKPRVFGGCATTWIVL 333 GPQKGSQPGLQLVGQYSGKPRVFGGCATTWIVL Sbjct: 303 GPQKGSQPGLQLVGQYSGKPRVFGGCATTWIVL 335 >4X33-B nrPDB Length = 333 Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/333 (100%), Positives = 333/333 (100%) Query: 1 MSCVYAFGSNGQRQLGLGHDEDMDTPQRSVPGDDGAIVRKIACGGNHSVMLTNDGNLVGC 60 MSCVYAFGSNGQRQLGLGHDEDMDTPQRSVPGDDGAIVRKIACGGNHSVMLTNDGNLVGC Sbjct: 1 MSCVYAFGSNGQRQLGLGHDEDMDTPQRSVPGDDGAIVRKIACGGNHSVMLTNDGNLVGC 60 Query: 61 GDNRRGELDSAQALRQVHDWRPVEVPAPVVDVACGWDTTVIVDADGRVWQRGGGCYEFTQ 120 GDNRRGELDSAQALRQVHDWRPVEVPAPVVDVACGWDTTVIVDADGRVWQRGGGCYEFTQ Sbjct: 61 GDNRRGELDSAQALRQVHDWRPVEVPAPVVDVACGWDTTVIVDADGRVWQRGGGCYEFTQ 120 Query: 121 QHVPLNSNDERIAVYGCFQNFVVVQGTRVYGWGSNTKCQLQEPKSRSLKEPVLVYDTGSV 180 QHVPLNSNDERIAVYGCFQNFVVVQGTRVYGWGSNTKCQLQEPKSRSLKEPVLVYDTGSV Sbjct: 121 QHVPLNSNDERIAVYGCFQNFVVVQGTRVYGWGSNTKCQLQEPKSRSLKEPVLVYDTGSV 180 Query: 181 AVDYVAMGKDFMVIVDEGGRIVHASGRLPTGFELKQQQKRHNLVVLCMWTSIHLWNARLN 240 AVDYVAMGKDFMVIVDEGGRIVHASGRLPTGFELKQQQKRHNLVVLCMWTSIHLWNARLN Sbjct: 181 AVDYVAMGKDFMVIVDEGGRIVHASGRLPTGFELKQQQKRHNLVVLCMWTSIHLWNARLN 240 Query: 241 TVESFGRGTHSQLFPQERLDFPIVGVATGSEHGILTTANQEGKSHCYNVYCWGWGEHGNC 300 TVESFGRGTHSQLFPQERLDFPIVGVATGSEHGILTTANQEGKSHCYNVYCWGWGEHGNC Sbjct: 241 TVESFGRGTHSQLFPQERLDFPIVGVATGSEHGILTTANQEGKSHCYNVYCWGWGEHGNC 300 Query: 301 GPQKGSQPGLQLVGQYSGKPRVFGGCATTWIVL 333 GPQKGSQPGLQLVGQYSGKPRVFGGCATTWIVL Sbjct: 301 GPQKGSQPGLQLVGQYSGKPRVFGGCATTWIVL 333 >5XGS-A nrPDB Length = 427 Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 38 VRKIACGGNHSVMLTNDGNLVGCGDNRRGELDSAQALRQVHDWRPVEVPAPVVDVACGWD 97 V +I CG +H LTN G L G N RG L + Q WR V +P VDVACG D Sbjct: 359 VSRIRCGLSHFAALTNKGELFVWGKNIRGCLGIGRLEDQYFPWR-VTMPGEPVDVACGVD 417 Query: 98 TTVIV 102 V + Sbjct: 418 HMVTL 422 Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 47/180 (26%), Positives = 76/180 (42%), Gaps = 24/180 (13%) Query: 4 VYAFGSNGQRQLGL---GHDEDMDTPQRSVPGDDGAIVR--KIACGGNHSVMLTNDGNLV 58 V+ G N QLG G++ ++ S+P D R +++CG HS++LT+ + Sbjct: 100 VWGMGLNKDSQLGFHGGGYEYVLEPSPVSLPLDRPQETRVLQVSCGRAHSLVLTDREGVF 159 Query: 59 GCGDNRRGELDSAQALRQVHD-----WRPVEVPAPVVDVACGWDTTVIVDADGRVW---- 109 G+N G+ +++ R + VV VACG D ++ + G V+ Sbjct: 160 SMGNNSYGQCGRKVVENEIYSESHRVHRMQDFDGQVVQVACGQDHSLFLTDKGEVYSCGW 219 Query: 110 ----QRGGGCYEFTQQHVPLNS-----NDERIAVYGCFQNFVVVQGTRVYGWGSNTKCQL 160 Q G G Y T L N ++A YG V G ++GWG++ QL Sbjct: 220 GADGQTGLGHYNITSSPTKLGGDLAGVNVIQVATYGDCCLAVSADGG-LFGWGNSEYLQL 278 Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 2/113 (1%) Query: 4 VYAFGSNGQRQLGLGHDEDMDTPQRSVPGDDGAIVRKIACGGNHSVMLTNDGNLVGCGDN 63 VY+ G Q GLGH +P + G V ++A G+ + ++ DG L G G++ Sbjct: 214 VYSCGWGADGQTGLGHYNITSSPTKLGGDLAGVNVIQVATYGDCCLAVSADGGLFGWGNS 273 Query: 64 RRGELDSAQALRQVHDWRPVEVP--APVVDVACGWDTTVIVDADGRVWQRGGG 114 +L S QV+ R + V ACG +++ +G V+ G G Sbjct: 274 EYLQLASVTDSTQVNVPRCLHFSGVGKVRQAACGGTGCAVLNGEGHVFVWGYG 326 >4NC4-A nrPDB Length = 377 Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 66/291 (22%), Positives = 123/291 (42%), Gaps = 36/291 (12%) Query: 4 VYAFGSNGQRQLGLGHDEDMDTPQRSVPGDDGAIVRKIACGGNHSVMLTNDGNLVGCGDN 63 VY++G +LG G+ D+ TP + G +++IACG +H + +T +G + G N Sbjct: 77 VYSWGWGDFGRLGHGNSSDLFTP-LPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRN 135 Query: 64 RRGEL---DSAQAL--RQVHDWRPVEVPAPVVDVACGWDTTVIVDADGRVWQRGGGCY-- 116 + G+L D+ +L +++ + + + VA G + T V DG ++ G G Y Sbjct: 136 QNGQLGLGDTEDSLVPQKIQAFEGIRIKM----VAAGAEHTAAVTEDGDLYGWGWGRYGN 191 Query: 117 ----EFTQQHVP---LNSNDERIAVYGC--FQNFVVVQGTRVYGWGSNTKCQLQEPKSRS 167 + T + VP ++ E++++ C V +Y +G + QL Sbjct: 192 LGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLED 251 Query: 168 LKEPVLVYDTGSVAVDYVAMGKDFMVIVDEGGRIV----HASGRLPTGFELKQ------- 216 P + + + ++ G + + G++ + G++ G L Q Sbjct: 252 HLIPHKLEALSNSFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVR 311 Query: 217 -QQKRHNLVVLCMWTSIHLWNARLNTVESFGRGTHSQLFPQERLD--FPIV 264 + + V C W R N V ++GRGT+ QL E +D FP + Sbjct: 312 FPDDQKVVQVSCGWRHTLAVTER-NNVFAWGRGTNGQLGIGESVDRNFPKI 361 Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust. Identities = 48/196 (24%), Positives = 65/196 (33%), Gaps = 35/196 (17%) Query: 132 IAVYGCFQNFVVVQGTRVYGWGSNTKCQLQEPKSRSLKEPVLVYDTGSVAVDYVAMGKDF 191 I G + ++ G V WG QL + P + + V G D Sbjct: 7 IISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADH 66 Query: 192 MVIVDEGGRIVHASG-----------------RLPT----GFELKQQQ--KRHNLVVLCM 228 V + G V++ G LP G +KQ H L V M Sbjct: 67 TVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAV-TM 125 Query: 229 WTSIHLWNARLNTVESFGRGTHSQLFPQERLDFP---IVGVATGSEHGILTTANQEGKSH 285 + W N G T L PQ+ F I VA G+EH T + + Sbjct: 126 EGEVQSWGRNQNGQLGLGD-TEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGD---- 180 Query: 286 CYNVYCWGWGEHGNCG 301 +Y WGWG +GN G Sbjct: 181 ---LYGWGWGRYGNLG 193 Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust. Identities = 78/343 (22%), Positives = 120/343 (34%), Gaps = 62/343 (18%) Query: 3 CVYAFGSNGQRQLGLGHDEDMDTPQRSVPGDDGAIVRKIACGGNHSVMLTNDGNLV---G 59 C + G +GQ LG G ED +P + + DG + + CG +H+V + G V G Sbjct: 25 CSWGRGEDGQ--LGHGDAEDRPSPTQ-LSALDGHQIVSVTCGADHTVAYSQSGMEVYSWG 81 Query: 60 CGDNRR------GELDSAQALRQVHDWRPVEVPAPVVDVACGWDTTVIVDADGRV--WQR 111 GD R +L + ++ +H R + +ACG + V +G V W R Sbjct: 82 WGDFGRLGHGNSSDLFTPLPIKALHGIR-------IKQIACGDSHCLAVTMEGEVQSWGR 134 Query: 112 ------GGGCYEFT---QQHVPLNSNDERIAVYGCFQNFVVVQGTRVYGWGSNTKCQLQE 162 G G E + Q+ ++ G V + +YGWG L Sbjct: 135 NQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGL 194 Query: 163 PKSRSLKEPVLVYDTGSVAVDYVAMGKDFMVIVDEGGRIV----HASGRLPTGFELKQQQ 218 P V TG + VA G + V G + G+L G +L+ Sbjct: 195 GDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHG-DLEDHL 253 Query: 219 KRHNLVVL----------------CMWTSIHLWNARLNTVESFGRGTHSQLFPQERLDFP 262 H L L + + L+ N G G + ++ FP Sbjct: 254 IPHKLEALSNSFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP 313 Query: 263 ----IVGVATGSEHGILTTANQEGKSHCYNVYCWGWGEHGNCG 301 +V V+ G H + T NV+ WG G +G G Sbjct: 314 DDQKVVQVSCGWRHTLAVTERN-------NVFAWGRGTNGQLG 349 >5TBK-I nrPDB Length = 421 Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/195 (26%), Positives = 82/195 (42%), Gaps = 34/195 (17%) Query: 4 VYAFGSNGQRQLGLGHDEDMDTPQRSVPG--DDGAIVRKIACGGNHSVMLTNDGNLV--G 59 VY+FG N + LG D ++ + VPG + V +++ G +H+ LT+DG + G Sbjct: 88 VYSFGCNDEG--ALGRDTSVEGSEM-VPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWG 144 Query: 60 CGDNRRGELDSAQALRQVHDWRPVEVPAPVVDVACGWDTTVIVDADGRVWQRG------- 112 + G + + +++ V++ PVV VA G D V++ ADG ++ G Sbjct: 145 SFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQL 204 Query: 113 ----------GGCYEFTQQHVP----LNSNDER------IAVYGCFQNFVVVQGTRVYGW 152 GG + VP L S R A G + F + VYG+ Sbjct: 205 GRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGF 264 Query: 153 GSNTKCQLQEPKSRS 167 G + QL P + S Sbjct: 265 GLSNYHQLGTPGTES 279 Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 10/74 (13%) Query: 228 MWTSIHLWNARLNTVESFGRGTHSQLFPQERLDFPIVGVATGSEHGILTTANQEGKSHCY 287 +W S N + +E + S + Q +LD P+V VA+G++H ++ TA+ Sbjct: 142 LWGSFRDNNGVIGLLEPMKK---SMVPVQVQLDVPVVKVASGNDHLVMLTADG------- 191 Query: 288 NVYCWGWGEHGNCG 301 ++Y G GE G G Sbjct: 192 DLYTLGCGEQGQLG 205 Score = 33.9 bits (76), Expect = 0.098, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 48/110 (43%), Gaps = 9/110 (8%) Query: 4 VYAFGSNGQRQLGLGHD--EDMDTPQRSVPGDDGAIVRKIACGGNHSVMLTNDGNLVGCG 61 V G QLGLG + E S+P D V + GG H+V L+ G + G Sbjct: 37 VLTLGQGDVGQLGLGENVMERKKPALVSIPED----VVQAEAGGMHTVCLSKSGQVYSFG 92 Query: 62 DNRRGELDSAQALRQVHDWRP--VEVPAPVVDVACGWDTTVIVDADGRVW 109 N G L ++ + + P VE+ VV V+ G T + DGRV+ Sbjct: 93 CNDEGALGRDTSV-EGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVF 141 Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 4 VYAFGSNGQRQLGLGHDEDMDTPQRSVPGD-DGAIVRKIACGGNHSVMLTND 54 V+A+G QLG G DED +P + + +V ++ GG H+V+L D Sbjct: 366 VFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKD 417 Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust. Identities = 29/112 (25%), Positives = 41/112 (36%), Gaps = 1/112 (0%) Query: 4 VYAFGSNGQRQLGLGHDEDMDTPQRSVPGDDGAIV-RKIACGGNHSVMLTNDGNLVGCGD 62 VY FG + QLG E PQ + + G +H+V + ++G G Sbjct: 261 VYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGR 320 Query: 63 NRRGELDSAQALRQVHDWRPVEVPAPVVDVACGWDTTVIVDADGRVWQRGGG 114 G L + + + V VACG V DGRV+ G G Sbjct: 321 AEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMG 372 Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust. Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 15/110 (13%) Query: 4 VYAFGSNGQRQLGLGHDEDMDTPQRSVPGDDGAI--VRKIACGGNHSVMLTNDGNLVGCG 61 Y+ G +LGLG + ++S+P + V +ACG + +T DG + G Sbjct: 315 AYSLGRAEYGRLGLGEGAE----EKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWG 370 Query: 62 DNRRGELDSAQALRQVHDWRPVEVPAP------VVDVACGWDTTVIVDAD 105 +L + Q W PVE+ V+ V+ G TV++ D Sbjct: 371 MGTNYQLGTGQ---DEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKD 417 >5HQ2-K nrPDB Length = 483 Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 3/61 (4%) Query: 4 VYAFGSNGQRQLGLGHD-ED--MDTPQRSVPGDDGAIVRKIACGGNHSVMLTNDGNLVGC 60 + ++G N Q G+ D ED + T + + D ++R IA G +HS++L+ DG+L C Sbjct: 296 LVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSC 355 Query: 61 G 61 G Sbjct: 356 G 356 Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 5/114 (4%) Query: 4 VYAFGSNGQRQLGLGHDEDMDTPQRSVPGDDGAIVRKIACGGNHSVMLTNDGNLVGCGDN 63 V+A+G+ Q QLG E V+ IA G NH LT D LV G N Sbjct: 243 VFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLN 302 Query: 64 RRGELDSAQALRQ---VHDWRPVEVPAPVV--DVACGWDTTVIVDADGRVWQRG 112 + G+ ++ + V + + +P VV +A G ++I+ DG ++ G Sbjct: 303 QFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCG 356 >3PAJ-A nrPDB Length = 320 Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 12/70 (17%) Query: 23 MDTPQRSVPGDDGAIVRKIACGG--NHSV-----MLTNDGNLVGCGDNRRGELDSAQALR 75 +DT ++++PG A+ +ACGG NH + L + +++ CG R+ + + Sbjct: 172 LDT-RKTIPGLRSALKYAVACGGGYNHRIGVFDAYLIKENHIIACGGIRQ----AISTAK 226 Query: 76 QVHDWRPVEV 85 Q++ +PVEV Sbjct: 227 QLNPGKPVEV 236 >4H51-A nrPDB Length = 420 Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust. Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 24/96 (25%) Query: 175 YDTGSVAVDYVAMGKDFMVIVDEGGRIVHASGRLPTGFELKQQQKRHNLVVLCMWTSIHL 234 YD +V++++ M KD + D I+H PTG + Q+Q W Sbjct: 168 YDPKTVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQ----------W----- 212 Query: 235 WNARLNTVESFGRGTHSQLFPQERLDFPIVGVATGS 270 N + S H Q+F D G A+GS Sbjct: 213 -----NEIASLMLAKHHQVF----FDSAYQGYASGS 239 >4WB0-B nrPDB Length = 414 Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust. Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 24/96 (25%) Query: 175 YDTGSVAVDYVAMGKDFMVIVDEGGRIVHASGRLPTGFELKQQQKRHNLVVLCMWTSIHL 234 YD ++ +D+ M KD + D ++H PTG + Q+Q W Sbjct: 162 YDHKTLGLDFEGMKKDILAAPDGSVFLLHQCAHNPTGVDPSQEQ----------W----- 206 Query: 235 WNARLNTVESFGRGTHSQLFPQERLDFPIVGVATGS 270 N + S H Q+F D G A+GS Sbjct: 207 -----NEIASLMLAKHHQVF----FDSAYQGYASGS 233 >4W7K-A nrPDB Length = 449 Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%) Query: 268 TGSEHGILTTANQEGKSHCYNVYCWGWGEHGNCGPQKG-SQPGLQ-LVGQYSGKPRVFGG 325 T E G+ A Q S ++ W ++ N P K + GL ++GQ +G+PRV G Sbjct: 352 TTQERGLAFVAYQAQLSQGFHFLQQTWADNANFPPGKTPATVGLDPIIGQNNGQPRVVNG 411 Query: 326 C 326 Sbjct: 412 L 412 >1NBW-A nrPDB Length = 607 Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 28 RSVPGDDGAIVRKIACGGNHSVMLTNDGNLVGCGDNRRGELDSAQALRQVHDWRPVEVPA 87 R++ G+ A+V K G S ++ GNL G+ RRGE D A+ + + + A Sbjct: 238 RALIGNRSAVVLKTPQGDVQSRVIPA-GNLYISGEKRRGEADVAEGAEAI--MQAMSACA 294 Query: 88 PVVDV 92 PV D+ Sbjct: 295 PVRDI 299 >1TAR-A nrPDB Length = 401 Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust. Identities = 12/44 (27%), Positives = 24/44 (54%) Query: 175 YDTGSVAVDYVAMGKDFMVIVDEGGRIVHASGRLPTGFELKQQQ 218 YD + ++D+ +D I ++ ++HA PTG + +Q+Q Sbjct: 153 YDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQ 196 >4FZC-A nrPDB Length = 250 Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust. Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 3/37 (8%) Query: 169 KEPVLVYDTGSVAVDYVAMGKDFMVIVDEGGRIVHAS 205 K +L D G+V Y MG D+ V+VD+ ++ H S Sbjct: 63 KVSLLTPDIGAV---YSGMGPDYRVLVDKSRKVAHTS 96 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 4D4O-A nrPDB 565 e-161 4X33-B nrPDB 555 e-158 4NC4-A nrPDB 320 5e-88 5TBK-I nrPDB 224 5e-59 5XGS-A nrPDB 151 4e-37 Sequences not found previously or not previously below threshold: 5HQ2-K nrPDB 97 7e-21 4W7K-A nrPDB 30 1.7 6HIV-Ap nrPDB 29 2.5 3BJS-A nrPDB 29 3.1 5GHG-A nrPDB 28 6.1 5AYN-A nrPDB 27 9.4 >4D4O-A nrPDB Length = 427 Score = 565 bits (1455), Expect = e-161, Method: Composition-based stats. Identities = 333/333 (100%), Positives = 333/333 (100%) Query: 1 MSCVYAFGSNGQRQLGLGHDEDMDTPQRSVPGDDGAIVRKIACGGNHSVMLTNDGNLVGC 60 MSCVYAFGSNGQRQLGLGHDEDMDTPQRSVPGDDGAIVRKIACGGNHSVMLTNDGNLVGC Sbjct: 3 MSCVYAFGSNGQRQLGLGHDEDMDTPQRSVPGDDGAIVRKIACGGNHSVMLTNDGNLVGC 62 Query: 61 GDNRRGELDSAQALRQVHDWRPVEVPAPVVDVACGWDTTVIVDADGRVWQRGGGCYEFTQ 120 GDNRRGELDSAQALRQVHDWRPVEVPAPVVDVACGWDTTVIVDADGRVWQRGGGCYEFTQ Sbjct: 63 GDNRRGELDSAQALRQVHDWRPVEVPAPVVDVACGWDTTVIVDADGRVWQRGGGCYEFTQ 122 Query: 121 QHVPLNSNDERIAVYGCFQNFVVVQGTRVYGWGSNTKCQLQEPKSRSLKEPVLVYDTGSV 180 QHVPLNSNDERIAVYGCFQNFVVVQGTRVYGWGSNTKCQLQEPKSRSLKEPVLVYDTGSV Sbjct: 123 QHVPLNSNDERIAVYGCFQNFVVVQGTRVYGWGSNTKCQLQEPKSRSLKEPVLVYDTGSV 182 Query: 181 AVDYVAMGKDFMVIVDEGGRIVHASGRLPTGFELKQQQKRHNLVVLCMWTSIHLWNARLN 240 AVDYVAMGKDFMVIVDEGGRIVHASGRLPTGFELKQQQKRHNLVVLCMWTSIHLWNARLN Sbjct: 183 AVDYVAMGKDFMVIVDEGGRIVHASGRLPTGFELKQQQKRHNLVVLCMWTSIHLWNARLN 242 Query: 241 TVESFGRGTHSQLFPQERLDFPIVGVATGSEHGILTTANQEGKSHCYNVYCWGWGEHGNC 300 TVESFGRGTHSQLFPQERLDFPIVGVATGSEHGILTTANQEGKSHCYNVYCWGWGEHGNC Sbjct: 243 TVESFGRGTHSQLFPQERLDFPIVGVATGSEHGILTTANQEGKSHCYNVYCWGWGEHGNC 302 Query: 301 GPQKGSQPGLQLVGQYSGKPRVFGGCATTWIVL 333 GPQKGSQPGLQLVGQYSGKPRVFGGCATTWIVL Sbjct: 303 GPQKGSQPGLQLVGQYSGKPRVFGGCATTWIVL 335 >4X33-B nrPDB Length = 333 Score = 555 bits (1430), Expect = e-158, Method: Composition-based stats. Identities = 333/333 (100%), Positives = 333/333 (100%) Query: 1 MSCVYAFGSNGQRQLGLGHDEDMDTPQRSVPGDDGAIVRKIACGGNHSVMLTNDGNLVGC 60 MSCVYAFGSNGQRQLGLGHDEDMDTPQRSVPGDDGAIVRKIACGGNHSVMLTNDGNLVGC Sbjct: 1 MSCVYAFGSNGQRQLGLGHDEDMDTPQRSVPGDDGAIVRKIACGGNHSVMLTNDGNLVGC 60 Query: 61 GDNRRGELDSAQALRQVHDWRPVEVPAPVVDVACGWDTTVIVDADGRVWQRGGGCYEFTQ 120 GDNRRGELDSAQALRQVHDWRPVEVPAPVVDVACGWDTTVIVDADGRVWQRGGGCYEFTQ Sbjct: 61 GDNRRGELDSAQALRQVHDWRPVEVPAPVVDVACGWDTTVIVDADGRVWQRGGGCYEFTQ 120 Query: 121 QHVPLNSNDERIAVYGCFQNFVVVQGTRVYGWGSNTKCQLQEPKSRSLKEPVLVYDTGSV 180 QHVPLNSNDERIAVYGCFQNFVVVQGTRVYGWGSNTKCQLQEPKSRSLKEPVLVYDTGSV Sbjct: 121 QHVPLNSNDERIAVYGCFQNFVVVQGTRVYGWGSNTKCQLQEPKSRSLKEPVLVYDTGSV 180 Query: 181 AVDYVAMGKDFMVIVDEGGRIVHASGRLPTGFELKQQQKRHNLVVLCMWTSIHLWNARLN 240 AVDYVAMGKDFMVIVDEGGRIVHASGRLPTGFELKQQQKRHNLVVLCMWTSIHLWNARLN Sbjct: 181 AVDYVAMGKDFMVIVDEGGRIVHASGRLPTGFELKQQQKRHNLVVLCMWTSIHLWNARLN 240 Query: 241 TVESFGRGTHSQLFPQERLDFPIVGVATGSEHGILTTANQEGKSHCYNVYCWGWGEHGNC 300 TVESFGRGTHSQLFPQERLDFPIVGVATGSEHGILTTANQEGKSHCYNVYCWGWGEHGNC Sbjct: 241 TVESFGRGTHSQLFPQERLDFPIVGVATGSEHGILTTANQEGKSHCYNVYCWGWGEHGNC 300 Query: 301 GPQKGSQPGLQLVGQYSGKPRVFGGCATTWIVL 333 GPQKGSQPGLQLVGQYSGKPRVFGGCATTWIVL Sbjct: 301 GPQKGSQPGLQLVGQYSGKPRVFGGCATTWIVL 333 >4NC4-A nrPDB Length = 377 Score = 320 bits (820), Expect = 5e-88, Method: Composition-based stats. Identities = 64/291 (21%), Positives = 119/291 (40%), Gaps = 36/291 (12%) Query: 4 VYAFGSNGQRQLGLGHDEDMDTPQRSVPGDDGAIVRKIACGGNHSVMLTNDGNLVGCGDN 63 VY++G +LG G+ D+ TP + G +++IACG +H + +T +G + G N Sbjct: 77 VYSWGWGDFGRLGHGNSSDLFTP-LPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRN 135 Query: 64 RRGELDSAQAL-----RQVHDWRPVEVPAPVVDVACGWDTTVIVDADGRVWQRGGGCY-- 116 + G+L +++ + + + VA G + T V DG ++ G G Y Sbjct: 136 QNGQLGLGDTEDSLVPQKIQAFEGIRIKM----VAAGAEHTAAVTEDGDLYGWGWGRYGN 191 Query: 117 ----EFTQQHVP---LNSNDERIAVYGC--FQNFVVVQGTRVYGWGSNTKCQLQEPKSRS 167 + T + VP ++ E++++ C V +Y +G + QL Sbjct: 192 LGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLED 251 Query: 168 LKEPVLVYDTGSVAVDYVAMGKDFMVIVDEGGRIV----HASGRLPTGFELKQ------- 216 P + + + ++ G + + G++ + G++ G L Q Sbjct: 252 HLIPHKLEALSNSFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVR 311 Query: 217 -QQKRHNLVVLCMWTSIHLWNARLNTVESFGRGTHSQLFPQERLD--FPIV 264 + + V C W R N V ++GRGT+ QL E +D FP + Sbjct: 312 FPDDQKVVQVSCGWRHTLAVTER-NNVFAWGRGTNGQLGIGESVDRNFPKI 361 Score = 127 bits (319), Expect = 7e-30, Method: Composition-based stats. Identities = 64/305 (20%), Positives = 101/305 (33%), Gaps = 47/305 (15%) Query: 35 GAIVRKIACGGNHSVMLTNDGNLVGCGDNRRGELDSAQALRQVHDWRPVEVPA-PVVDVA 93 V I+ G +HSV L + + G G+L A + + + +V V Sbjct: 2 PRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVT 61 Query: 94 CGWDTTVIVDADG-RVWQRGGGCYEF------TQQHVPL------NSNDERIAVYGCFQN 140 CG D TV G V+ G G + + PL ++IA G Sbjct: 62 CGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIA-CGDSHC 120 Query: 141 FVVVQGTRVYGWGSNTKCQLQEPKSRSLKEPVLVYDTGSVAVDYVAMGKDFMVIVDEGGR 200 V V WG N QL + P + + + VA G + V E G Sbjct: 121 LAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGD 180 Query: 201 IV----HASGRLPTGFELKQ--QQK------RHNLVVLCMWTSIHLWNARLNTVESFGRG 248 + G L G + ++ +V C W + + ++G Sbjct: 181 LYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVS-YSGALYTYGWS 239 Query: 249 THSQLFPQERLD--FP----------IVGVATGSEHGILTTANQEGKSHCYNVYCWGWGE 296 + QL + D P I ++ G H + T+ +GK +Y WGW + Sbjct: 240 KYGQLGHGDLEDHLIPHKLEALSNSFISQISGGFRHTMALTS--DGK-----LYGWGWNK 292 Query: 297 HGNCG 301 G G Sbjct: 293 FGQVG 297 >5TBK-I nrPDB Length = 421 Score = 224 bits (570), Expect = 5e-59, Method: Composition-based stats. Identities = 72/335 (21%), Positives = 129/335 (38%), Gaps = 60/335 (17%) Query: 4 VYAFGSNGQRQLGLGHDEDMDTPQR-SVPGDDGAIVRKIACGGNHSVMLTNDGNLVGCG- 61 VY+FG N + LG D ++ + + V +++ G +H+ LT+DG + G Sbjct: 88 VYSFGCNDEG--ALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGS 145 Query: 62 -DNRRGELDSAQALRQVHDWRPVEVPAPVVDVACGWDTTVIVDADGRVWQRG-------- 112 + G + + +++ V++ PVV VA G D V++ ADG ++ G Sbjct: 146 FRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLG 205 Query: 113 ---------GGCYEFTQQHVP----LNSNDER------IAVYGCFQNFVVVQGTRVYGWG 153 GG + VP L S R A G + F + VYG+G Sbjct: 206 RVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFG 265 Query: 154 SNTKCQLQEPKSRSLKEPVLVYDTGSVAVDYV--AMGKDFMVIVDEGGRIVH----ASGR 207 + QL P + S P + + +V + G+ V +D G+ GR Sbjct: 266 LSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGR 325 Query: 208 LPTGFELKQQQKRHNL-------VVLCMWTSIHLWNARLNTVESFGRGTHSQLFPQERLD 260 L G +++ + V C + + + V ++G GT+ QL + D Sbjct: 326 LGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAVT-KDGRVFAWGMGTNYQLGTGQDED 384 Query: 261 F--------------PIVGVATGSEHGILTTANQE 281 ++ V++G +H +L ++E Sbjct: 385 AWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKE 419 Score = 63.6 bits (153), Expect = 1e-10, Method: Composition-based stats. Identities = 75/338 (22%), Positives = 114/338 (33%), Gaps = 72/338 (21%) Query: 28 RSVPGDDGAIVRKIACGGNHSVMLTNDGNLVGCGDNRRGELDSAQALRQVHDWRPVEVPA 87 RS P D +K+ +H T G ++ G G+L + + + V +P Sbjct: 10 RSPPADAIPKSKKVKV--SHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPE 67 Query: 88 PVVDVACGWDTTVIVDADGRVWQRG------GGC------YEFTQQHVPLNSNDERIAVY 135 VV G TV + G+V+ G G E V L +++ Sbjct: 68 DVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSA- 126 Query: 136 GCFQNFVVVQGTRVYGWG----SNTKCQLQEPKSRSLKEPVLVYDTGSVAVDYVAMGKDF 191 G + RV+ WG +N L EP +S PV V V V VA G D Sbjct: 127 GDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKS-MVPVQVQL--DVPVVKVASGNDH 183 Query: 192 MVIVDEGGRIVH-------ASGRLPTGFE------------------LKQQQKRHNLV-- 224 +V++ G + GR+P F LK + R ++ Sbjct: 184 LVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQ 243 Query: 225 -VLCMWTSIHLWNARLNTVESFGRGTHSQLF---------PQERLDFPI-----VGVATG 269 C + + V FG + QL PQ F VG + G Sbjct: 244 DAFCGAYFTFAISHEGH-VYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGG 302 Query: 270 SEHGILTTANQEGKSHCYNVYCWGWGEHGNCGPQKGSQ 307 H + + EGK+ Y G E+G G +G++ Sbjct: 303 QHHTV--CMDSEGKA-----YSLGRAEYGRLGLGEGAE 333 >5XGS-A nrPDB Length = 427 Score = 151 bits (381), Expect = 4e-37, Method: Composition-based stats. Identities = 70/321 (21%), Positives = 116/321 (36%), Gaps = 54/321 (16%) Query: 4 VYAFGSNGQRQLGL---GHDEDMDTPQRSVPGDDGA--IVRKIACGGNHSVMLTNDGNLV 58 V+ G N QLG G++ ++ S+P D V +++CG HS++LT+ + Sbjct: 100 VWGMGLNKDSQLGFHGGGYEYVLEPSPVSLPLDRPQETRVLQVSCGRAHSLVLTDREGVF 159 Query: 59 GCGDNRRGELDSAQALRQVH-----DWRPVEVPAPVVDVACGWDTTVIVDADGRVW---- 109 G+N G+ +++ R + VV VACG D ++ + G V+ Sbjct: 160 SMGNNSYGQCGRKVVENEIYSESHRVHRMQDFDGQVVQVACGQDHSLFLTDKGEVYSCGW 219 Query: 110 ----QRGGGCYEFTQQHVPLNS-----NDERIAVYGCFQNFVVVQGTRVYGWGSNTKCQL 160 Q G G Y T L N ++A YG V G ++GWG++ QL Sbjct: 220 GADGQTGLGHYNITSSPTKLGGDLAGVNVIQVATYGDCCLAVSADGG-LFGWGNSEYLQL 278 Query: 161 QE-PKSRSLKEPVLVYDTGSVAVDYVAMGKDFMVIVDEGGRI-VHASGRLPTGFELKQQQ 218 S + P ++ +G V A G +++ G + V G L G L + Sbjct: 279 ASVTDSTQVNVPRCLHFSGVGKVRQAACGGTGCAVLNGEGHVFVWGYGILGKGPNLVESA 338 Query: 219 -----------------KRHNLVVLCMWTSIHLWNARLNTVESFGRGTHSQLFPQERLD- 260 + + C + + + +G+ L D Sbjct: 339 VPEMIPPTLFGLTEFNPEIQVSRIRCGLSHFAALTNK-GELFVWGKNIRGCLGIGRLEDQ 397 Query: 261 -FP--------IVGVATGSEH 272 FP V VA G +H Sbjct: 398 YFPWRVTMPGEPVDVACGVDH 418 Score = 98.2 bits (243), Expect = 5e-21, Method: Composition-based stats. Identities = 34/106 (32%), Positives = 45/106 (42%), Gaps = 12/106 (11%) Query: 4 VYAFGSNGQRQLGLGHDEDMDTPQRSVPGDDG-------AIVRKIACGGNHSVMLTNDGN 56 V+ +G G+ + + P+ P G V +I CG +H LTN G Sbjct: 322 VWGYGILGKGP----NLVESAVPEMIPPTLFGLTEFNPEIQVSRIRCGLSHFAALTNKGE 377 Query: 57 LVGCGDNRRGELDSAQALRQVHDWRPVEVPAPVVDVACGWDTTVIV 102 L G N RG L + Q WR V +P VDVACG D V + Sbjct: 378 LFVWGKNIRGCLGIGRLEDQYFPWR-VTMPGEPVDVACGVDHMVTL 422 Score = 76.7 bits (187), Expect = 1e-14, Method: Composition-based stats. Identities = 49/213 (23%), Positives = 76/213 (35%), Gaps = 25/213 (11%) Query: 4 VYAFGSNGQRQLGLGHDEDMDTPQRSVPGDD-GAIVRKIACGGNHSVMLTNDGNLVGCGD 62 VY+ G Q GLGH ++ + + GD G V ++A G+ + ++ DG L G G+ Sbjct: 214 VYSCGWGADGQTGLGH-YNITSSPTKLGGDLAGVNVIQVATYGDCCLAVSADGGLFGWGN 272 Query: 63 NRRGELDSAQALRQVHDWRPVEVP--APVVDVACGWDTTVIVDADGRVWQRGGGCYEFTQ 120 + +L S QV+ R + V ACG +++ +G V+ G G Sbjct: 273 SEYLQLASVTDSTQVNVPRCLHFSGVGKVRQAACGGTGCAVLNGEGHVFVWGYGILGKGP 332 Query: 121 QHVPLNS------------------NDERIAVYGCFQNFVVVQGTRVYGWGSNTKCQLQE 162 V RI G + ++ WG N + L Sbjct: 333 NLVESAVPEMIPPTLFGLTEFNPEIQVSRIR-CGLSHFAALTNKGELFVWGKNIRGCLGI 391 Query: 163 PKSRSLKEPVLVYDTGSVAVDYVAMGKDFMVIV 195 + P V G VA G D MV + Sbjct: 392 GRLEDQYFPWRVTMPGEPV--DVACGVDHMVTL 422 >5HQ2-K nrPDB Length = 483 Score = 97.5 bits (241), Expect = 7e-21, Method: Composition-based stats. Identities = 64/349 (18%), Positives = 111/349 (31%), Gaps = 83/349 (23%) Query: 2 SCVYAFGSNGQRQLGLGHDED------------------------MDTPQRSVPGD---- 33 S V+++G N LG D +++ +P + Sbjct: 104 SNVWSWGCNDVG--ALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPP 161 Query: 34 --DGAIVRKIACGGNHSVMLTNDGNLVGCG--DNRRGELDSAQALRQVH--DWR-PVEVP 86 +G V ++A N S L ++G + G G L Q ++ W+ P Sbjct: 162 LAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSK 221 Query: 87 APVVDVACGWDTTVIVDADGRVWQRGGGCYE------------FTQQHVPLNSNDERIAV 134 +V +A G D + +D +G V+ G G T P + Sbjct: 222 YNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIA 281 Query: 135 YGCFQNFVVVQGTRVYGWGSNTKCQLQ-EPKSRS---LKEPVLVYDTGSVAVDYVAMGKD 190 G F + + ++ WG N Q + +P + +V + +A G+ Sbjct: 282 SGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEH 341 Query: 191 FMVIVDEGGRIVHASGRLPTGFELKQQQK---RHNLVVLCMWTSIHLWNARLNTVESFGR 247 +I+ + G + + GRL FE+ + + + +LN V F Sbjct: 342 HSLILSQDGDLY-SCGRLDM-FEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFK- 398 Query: 248 GTHSQLFPQERLDFPIVGVATGSEHGILTTANQEGKSHCYNVYCWGWGE 296 VA GS H + N Y WG+GE Sbjct: 399 -----------------SVAAGSHHSVAVAQNGIA-------YSWGFGE 423 Score = 76.3 bits (186), Expect = 2e-14, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 82/244 (33%), Gaps = 48/244 (19%) Query: 4 VYAFGSNGQRQLGLG-----HDEDMDTPQRSVPGDDGAIVRKIACGGNHSVMLTNDGNLV 58 V+A+G+ Q QLG + +D + V+ IA G NH LT D LV Sbjct: 243 VFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLR-----HVKYIASGENHCFALTKDNKLV 297 Query: 59 GCGDNRRGELD-SAQALRQVHDWRPVEVPAP----VVDVACGWDTTVIVDADGRVWQRG- 112 G N+ G+ S +P + P + +A G ++I+ DG ++ G Sbjct: 298 SWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGR 357 Query: 113 ------------GGCYEFTQQH-----VPLNSNDERIAVY-----GCFQNFVVVQGTRVY 150 Y + H VPL + + + G + V Q Y Sbjct: 358 LDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQNGIAY 417 Query: 151 GWGSNTKCQLQEPKSRSLKE-PVLVYDTGSVAVDYVAMGKDFMVIVDEGGRIVHASGRLP 209 WG + E P + +T + +D +I+ G SG + Sbjct: 418 SWGFGETYAVGLGPFEDDTEVPTRIKNTAT---------QDHNIILVGCGGQFSVSGGVK 468 Query: 210 TGFE 213 E Sbjct: 469 LSDE 472 >4W7K-A nrPDB Length = 449 Score = 29.7 bits (65), Expect = 1.7, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%) Query: 268 TGSEHGILTTANQEGKSHCYNVYCWGWGEHGNCGPQKG-SQPGLQ-LVGQYSGKPRVFGG 325 T E G+ A Q S ++ W ++ N P K + GL ++GQ +G+PRV G Sbjct: 352 TTQERGLAFVAYQAQLSQGFHFLQQTWADNANFPPGKTPATVGLDPIIGQNNGQPRVVNG 411 >6HIV-Ap nrPDB Length = 309 Score = 29.3 bits (64), Expect = 2.5, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 2/55 (3%) Query: 150 YGWGSNTKCQLQEPKSRSLKEPVLVYDTGSVAVDYVAMGKDFMVIVDEGGRIVHA 204 Y + +T C E +RS+ Y DY G++F + + G+++ Sbjct: 58 YTYNKSTVCLWGEGDTRSMYHQH--YAHAKCPTDYGRGGREFEYLTVKRGKMLQK 110 >3BJS-A nrPDB Length = 428 Score = 28.9 bits (63), Expect = 3.1, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 20/70 (28%), Gaps = 5/70 (7%) Query: 38 VRKIACGGNH-----SVMLTNDGNLVGCGDNRRGELDSAQALRQVHDWRPVEVPAPVVDV 92 + IA G NH + + G + + + +R +P Sbjct: 281 LVPIAAGENHYTRFEFGQMLDAGAVQVWQPDLSKCGGITEGIRIAAMASAYRIPINAHSS 340 Query: 93 ACGWDTTVIV 102 A G + + Sbjct: 341 ATGLNHAATI 350 >5GHG-A nrPDB Length = 456 Score = 28.1 bits (61), Expect = 6.1, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 4/67 (5%) Query: 203 HASGRLPTGFELKQQQKRHNLVVLCMWTSIHLWNARLNTVESFGRGTHSQLFPQERLDFP 262 H G L TGF H + ++ + R + RGT+ Q +E D P Sbjct: 314 HKIGTLGTGFTASG----HPVAAAVALENLAIIEERDLVANARDRGTYMQKRLRELQDHP 369 Query: 263 IVGVATG 269 +VG G Sbjct: 370 LVGEVRG 376 >5AYN-A nrPDB Length = 440 Score = 27.4 bits (59), Expect = 9.4, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 6/69 (8%) Query: 68 LDSAQALRQVHDWRPVEVPAPVVDVACGWDTTV------IVDADGRVWQRGGGCYEFTQQ 121 L + R ++ V + V A G +V I+ + ++ G +E Q+ Sbjct: 305 LGLISSSRWHLGFQGVTLGIAVTAFAMGSTASVYVFLGCILLSRVGLYGFSNGEFELRQR 364 Query: 122 HVPLNSNDE 130 +P E Sbjct: 365 LIPEGRRGE 373 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.312 0.131 0.371 Lambda K H 0.267 0.0408 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,502,922 Number of Sequences: 36641 Number of extensions: 552733 Number of successful extensions: 1305 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 13 Number of HSP's that attempted gapping in prelim test: 1136 Number of HSP's gapped (non-prelim): 61 length of query: 333 length of database: 10,336,785 effective HSP length: 98 effective length of query: 235 effective length of database: 6,745,967 effective search space: 1585302245 effective search space used: 1585302245 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.4 bits) S2: 59 (27.3 bits)