BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P30533 (357 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 2P01-A nrPDB 642 0.0 2FCW-A nrPDB 215 2e-56 1OV2-A nrPDB 199 2e-51 1NRE-A nrPDB 161 4e-40 1CZD-A nrPDB 32 0.30 6F4A-A nrPDB 29 3.0 3LG3-A nrPDB 29 3.3 2VKH-A nrPDB 28 4.8 6NRU-A nrPDB 28 6.7 1YZY-A nrPDB 28 7.8 2GEN-A nrPDB 28 8.2 >2P01-A nrPDB Length = 323 Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/323 (100%), Positives = 323/323 (100%) Query: 35 YSREKNQPKPSPKRESGEEFRMEKLNQLWEKAQRLHLPPVRLAELHADLKIQERDELAWK 94 YSREKNQPKPSPKRESGEEFRMEKLNQLWEKAQRLHLPPVRLAELHADLKIQERDELAWK Sbjct: 1 YSREKNQPKPSPKRESGEEFRMEKLNQLWEKAQRLHLPPVRLAELHADLKIQERDELAWK 60 Query: 95 KLKLDGLDEDGEKEARLIRNLNVILAKYGLDGKKDARQVTSNSLSGTQEDGLDDPRLEKL 154 KLKLDGLDEDGEKEARLIRNLNVILAKYGLDGKKDARQVTSNSLSGTQEDGLDDPRLEKL Sbjct: 61 KLKLDGLDEDGEKEARLIRNLNVILAKYGLDGKKDARQVTSNSLSGTQEDGLDDPRLEKL 120 Query: 155 WHKAKTSGKFSGEELDKLWREFLHHKEKVHEYNVLLETLSRTEEIHENVISPSDLSDIKG 214 WHKAKTSGKFSGEELDKLWREFLHHKEKVHEYNVLLETLSRTEEIHENVISPSDLSDIKG Sbjct: 121 WHKAKTSGKFSGEELDKLWREFLHHKEKVHEYNVLLETLSRTEEIHENVISPSDLSDIKG 180 Query: 215 SVLHSRHTELKEKLRSINQGLDRLRRVSHQGYSTEAEFEEPRVIDLWDLAQSANLTDKEL 274 SVLHSRHTELKEKLRSINQGLDRLRRVSHQGYSTEAEFEEPRVIDLWDLAQSANLTDKEL Sbjct: 181 SVLHSRHTELKEKLRSINQGLDRLRRVSHQGYSTEAEFEEPRVIDLWDLAQSANLTDKEL 240 Query: 275 EAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEGRTKEL 334 EAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEGRTKEL Sbjct: 241 EAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEGRTKEL 300 Query: 335 GYTVKKHLQDLSGRISRARHNEL 357 GYTVKKHLQDLSGRISRARHNEL Sbjct: 301 GYTVKKHLQDLSGRISRARHNEL 323 >2FCW-A nrPDB Length = 109 Score = 215 bits (548), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 108/108 (100%), Positives = 108/108 (100%) Query: 250 AEFEEPRVIDLWDLAQSANLTDKELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAE 309 AEFEEPRVIDLWDLAQSANLTDKELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAE Sbjct: 2 AEFEEPRVIDLWDLAQSANLTDKELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAE 61 Query: 310 SVGDGERVSRSREKHALLEGRTKELGYTVKKHLQDLSGRISRARHNEL 357 SVGDGERVSRSREKHALLEGRTKELGYTVKKHLQDLSGRISRARHNEL Sbjct: 62 SVGDGERVSRSREKHALLEGRTKELGYTVKKHLQDLSGRISRARHNEL 109 >1OV2-A nrPDB Length = 99 Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 99/99 (100%), Positives = 99/99 (100%) Query: 35 YSREKNQPKPSPKRESGEEFRMEKLNQLWEKAQRLHLPPVRLAELHADLKIQERDELAWK 94 YSREKNQPKPSPKRESGEEFRMEKLNQLWEKAQRLHLPPVRLAELHADLKIQERDELAWK Sbjct: 1 YSREKNQPKPSPKRESGEEFRMEKLNQLWEKAQRLHLPPVRLAELHADLKIQERDELAWK 60 Query: 95 KLKLDGLDEDGEKEARLIRNLNVILAKYGLDGKKDARQV 133 KLKLDGLDEDGEKEARLIRNLNVILAKYGLDGKKDARQV Sbjct: 61 KLKLDGLDEDGEKEARLIRNLNVILAKYGLDGKKDARQV 99 >1NRE-A nrPDB Length = 81 Score = 161 bits (408), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 81/81 (100%), Positives = 81/81 (100%) Query: 51 GEEFRMEKLNQLWEKAQRLHLPPVRLAELHADLKIQERDELAWKKLKLDGLDEDGEKEAR 110 GEEFRMEKLNQLWEKAQRLHLPPVRLAELHADLKIQERDELAWKKLKLDGLDEDGEKEAR Sbjct: 1 GEEFRMEKLNQLWEKAQRLHLPPVRLAELHADLKIQERDELAWKKLKLDGLDEDGEKEAR 60 Query: 111 LIRNLNVILAKYGLDGKKDAR 131 LIRNLNVILAKYGLDGKKDAR Sbjct: 61 LIRNLNVILAKYGLDGKKDAR 81 >1CZD-A nrPDB Length = 228 Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust. Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 7/95 (7%) Query: 26 WPAASHGGKYSREKNQPKPSPKRESGEEFRMEKLNQLWEKAQRLHLPPVRLAELHADLKI 85 WPAA + N+P P P + E + E L QL ++ L + + + + I Sbjct: 92 WPAADPSTVVA--PNKPIPFPVASAVTEIKAEDLQQLLRVSRGLQIDTIAITVKEGKIVI 149 Query: 86 Q-----ERDELAWKKLKLDGLDEDGEKEARLIRNL 115 E L K L D DGE I N+ Sbjct: 150 NGFNKVEDSALTRVKYSLTLGDYDGENTFNFIINM 184 >6F4A-A nrPDB Length = 832 Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust. Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 18/109 (16%) Query: 47 KRESGEEFRMEKLNQLWEKAQRLHLPPVRLAELHADLKIQERDELAWKKL-----KLDGL 101 KRES + +K+ + + + PV +L + + AW +L KL+ + Sbjct: 98 KRESNHPY--QKIGTIKNSSNETEILPVLTRQLIVSFTLATFTKFAWTQLPIVLKKLELI 155 Query: 102 -----DEDGEKEA------RLIRNLNVILAKYGLDGKKDARQVTSNSLS 139 D G K R+I+NLN+ A ++G R+V S+S Sbjct: 156 HRYLQDSRGSKHVNFMSLVRIIKNLNIKEATDAINGDAYVRKVIDESMS 204 >3LG3-A nrPDB Length = 435 Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust. Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 13/84 (15%) Query: 268 NLTDKELEAFREELKHFEAKIE------KHNHYQKQLEIAHEKLRHAESVGDGERVSRSR 321 NLTD+++ +F++EL K + H+ + ++AH + GE + Sbjct: 328 NLTDQQIASFQDELSAMGYKYQFITLAGIHSMWFNMFDLAH-------AYAQGEGMKHYV 380 Query: 322 EKHALLEGRTKELGYTVKKHLQDL 345 EK E + + GYT H Q++ Sbjct: 381 EKVQQPEFASVDRGYTFASHQQEV 404 >2VKH-A nrPDB Length = 546 Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust. Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 4/45 (8%) Query: 263 LAQSANLTDKELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRH 307 + +SA T+ LE+FRE L + + + + Y+K++EI ++K +H Sbjct: 145 IVESA--TNNTLESFRENLN--DPEFDYNKFYRKRMEIIYDKQKH 185 >6NRU-A nrPDB Length = 206 Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust. Identities = 9/32 (28%), Positives = 21/32 (65%) Query: 274 LEAFREELKHFEAKIEKHNHYQKQLEIAHEKL 305 +AF + ++ F A++ ++ HYQ L ++H+ + Sbjct: 124 FQAFSQRVERFIARLSEYQHYQNILIVSHQGV 155 >1YZY-A nrPDB Length = 413 Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust. Identities = 10/31 (32%), Positives = 21/31 (67%) Query: 269 LTDKELEAFREELKHFEAKIEKHNHYQKQLE 299 +T+K++E +RE+ HF+ +E+ H + +E Sbjct: 258 MTNKQVEKYREKAPHFQLDVEQAIHNENYIE 288 >2GEN-A nrPDB Length = 197 Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust. Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 32/154 (20%) Query: 123 GLDGKKDARQVTSNSLSGTQEDGLDDPRLEKLWHKAKTSGKFSGEELDKLWREFLHHKEK 182 G +KD ++ +L+ E G+D +E + + SG + L+ F +KE+ Sbjct: 4 GRSSRKD--EILQAALACFSEHGVDATTIEMIRDR-------SGASIGSLYHHF-GNKER 53 Query: 183 VH---------EYNVLLET-LSRTEEIHENV--ISPSDLSDIKGS------VLHSR---- 220 +H +Y LLE +R E V + S + + + +LHSR Sbjct: 54 IHGELYLAGIGQYAALLEAGFARARSAEETVRLLVTSYIDWVVANPDWARFILHSRGRVE 113 Query: 221 HTELKEKLRSINQGLDRLRRVSHQGYSTEAEFEE 254 EL E+LR+ NQ + GY E F E Sbjct: 114 AGELGERLRADNQAHFARIHAALAGYRAEGLFRE 147 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 2P01-A nrPDB 598 e-171 2FCW-A nrPDB 196 9e-51 1OV2-A nrPDB 188 3e-48 1NRE-A nrPDB 155 2e-38 Sequences not found previously or not previously below threshold: 5M6U-B nrPDB 36 0.025 5OFO-C nrPDB 33 0.23 2GEN-A nrPDB 30 1.5 1YZY-A nrPDB 30 1.5 3CEU-A nrPDB 30 1.7 1XG7-A nrPDB 30 1.8 5TS9-A nrPDB 30 2.2 3LG3-A nrPDB 29 2.6 6NRU-A nrPDB 29 2.6 2H63-A nrPDB 29 4.7 4TMA-B nrPDB 28 5.6 6ID1-L nrPDB 28 8.6 CONVERGED! >2P01-A nrPDB Length = 323 Score = 598 bits (1541), Expect = e-171, Method: Composition-based stats. Identities = 323/323 (100%), Positives = 323/323 (100%) Query: 35 YSREKNQPKPSPKRESGEEFRMEKLNQLWEKAQRLHLPPVRLAELHADLKIQERDELAWK 94 YSREKNQPKPSPKRESGEEFRMEKLNQLWEKAQRLHLPPVRLAELHADLKIQERDELAWK Sbjct: 1 YSREKNQPKPSPKRESGEEFRMEKLNQLWEKAQRLHLPPVRLAELHADLKIQERDELAWK 60 Query: 95 KLKLDGLDEDGEKEARLIRNLNVILAKYGLDGKKDARQVTSNSLSGTQEDGLDDPRLEKL 154 KLKLDGLDEDGEKEARLIRNLNVILAKYGLDGKKDARQVTSNSLSGTQEDGLDDPRLEKL Sbjct: 61 KLKLDGLDEDGEKEARLIRNLNVILAKYGLDGKKDARQVTSNSLSGTQEDGLDDPRLEKL 120 Query: 155 WHKAKTSGKFSGEELDKLWREFLHHKEKVHEYNVLLETLSRTEEIHENVISPSDLSDIKG 214 WHKAKTSGKFSGEELDKLWREFLHHKEKVHEYNVLLETLSRTEEIHENVISPSDLSDIKG Sbjct: 121 WHKAKTSGKFSGEELDKLWREFLHHKEKVHEYNVLLETLSRTEEIHENVISPSDLSDIKG 180 Query: 215 SVLHSRHTELKEKLRSINQGLDRLRRVSHQGYSTEAEFEEPRVIDLWDLAQSANLTDKEL 274 SVLHSRHTELKEKLRSINQGLDRLRRVSHQGYSTEAEFEEPRVIDLWDLAQSANLTDKEL Sbjct: 181 SVLHSRHTELKEKLRSINQGLDRLRRVSHQGYSTEAEFEEPRVIDLWDLAQSANLTDKEL 240 Query: 275 EAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEGRTKEL 334 EAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEGRTKEL Sbjct: 241 EAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEGRTKEL 300 Query: 335 GYTVKKHLQDLSGRISRARHNEL 357 GYTVKKHLQDLSGRISRARHNEL Sbjct: 301 GYTVKKHLQDLSGRISRARHNEL 323 >2FCW-A nrPDB Length = 109 Score = 196 bits (499), Expect = 9e-51, Method: Composition-based stats. Identities = 108/108 (100%), Positives = 108/108 (100%) Query: 250 AEFEEPRVIDLWDLAQSANLTDKELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAE 309 AEFEEPRVIDLWDLAQSANLTDKELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAE Sbjct: 2 AEFEEPRVIDLWDLAQSANLTDKELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAE 61 Query: 310 SVGDGERVSRSREKHALLEGRTKELGYTVKKHLQDLSGRISRARHNEL 357 SVGDGERVSRSREKHALLEGRTKELGYTVKKHLQDLSGRISRARHNEL Sbjct: 62 SVGDGERVSRSREKHALLEGRTKELGYTVKKHLQDLSGRISRARHNEL 109 >1OV2-A nrPDB Length = 99 Score = 188 bits (477), Expect = 3e-48, Method: Composition-based stats. Identities = 99/99 (100%), Positives = 99/99 (100%) Query: 35 YSREKNQPKPSPKRESGEEFRMEKLNQLWEKAQRLHLPPVRLAELHADLKIQERDELAWK 94 YSREKNQPKPSPKRESGEEFRMEKLNQLWEKAQRLHLPPVRLAELHADLKIQERDELAWK Sbjct: 1 YSREKNQPKPSPKRESGEEFRMEKLNQLWEKAQRLHLPPVRLAELHADLKIQERDELAWK 60 Query: 95 KLKLDGLDEDGEKEARLIRNLNVILAKYGLDGKKDARQV 133 KLKLDGLDEDGEKEARLIRNLNVILAKYGLDGKKDARQV Sbjct: 61 KLKLDGLDEDGEKEARLIRNLNVILAKYGLDGKKDARQV 99 >1NRE-A nrPDB Length = 81 Score = 155 bits (392), Expect = 2e-38, Method: Composition-based stats. Identities = 81/81 (100%), Positives = 81/81 (100%) Query: 51 GEEFRMEKLNQLWEKAQRLHLPPVRLAELHADLKIQERDELAWKKLKLDGLDEDGEKEAR 110 GEEFRMEKLNQLWEKAQRLHLPPVRLAELHADLKIQERDELAWKKLKLDGLDEDGEKEAR Sbjct: 1 GEEFRMEKLNQLWEKAQRLHLPPVRLAELHADLKIQERDELAWKKLKLDGLDEDGEKEAR 60 Query: 111 LIRNLNVILAKYGLDGKKDAR 131 LIRNLNVILAKYGLDGKKDAR Sbjct: 61 LIRNLNVILAKYGLDGKKDAR 81 >5M6U-B nrPDB Length = 724 Score = 35.8 bits (81), Expect = 0.025, Method: Composition-based stats. Identities = 44/208 (21%), Positives = 84/208 (40%), Gaps = 33/208 (15%) Query: 150 RLEKLWHKAKTSGKFSGEELDKLWREFLHH--KEKVHEYNVLLET--LSRTEEIHENVIS 205 +L K++H+ G FS E ++H E + +YN L+ L + ++ + Sbjct: 379 KLIKIFHRDGKYG-FSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQDQVV 437 Query: 206 PSDLSDIKGSVLHSRHTELKEKLRSINQGLDRLRRVSHQGYSTEAEFEEPRVIDLWDLAQ 265 D + G LH +T+ +EK R ++ + R S Q Sbjct: 438 KEDNIEAVGKKLHEYNTQFQEKSREYDRLYEDYTRTS----------------------Q 475 Query: 266 SANLTDKELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAESVGDGERVSRSREKHA 325 + +EAF E +K FE + + Y K+ EK + + + +R+ + EK Sbjct: 476 EIQMKRTAIEAFNETIKIFEEQCQTQERYSKEYI---EKFKREGNETEIQRIMHNYEK-- 530 Query: 326 LLEGRTKELGYTVKKHLQDLSGRISRAR 353 L+ R E+ + ++ +DL + + R Sbjct: 531 -LKSRISEIVDSRRRLEEDLKKQAAEYR 557 >5OFO-C nrPDB Length = 871 Score = 32.7 bits (73), Expect = 0.23, Method: Composition-based stats. Identities = 45/191 (23%), Positives = 76/191 (39%), Gaps = 25/191 (13%) Query: 175 EFLHHKEKVHEYNVLLETLSRTEEIHENVISPSDLSDIKGSVLHSRHTELKEKLRSINQG 234 E HH + V TLS I+ L D ++ + ++ ++ S + Sbjct: 362 ELHHHVQITDPAIVAAATLS------HRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEE 415 Query: 235 LDRLRR------VSHQGYSTEAEFEEPRVIDLWDLAQSANLTDKELE--AFREELKHFEA 286 LDRL R + Q E++ + +D+ + L+DKE + EE K +A Sbjct: 416 LDRLDRRIIQLKLEQQALMKESDEASKKRLDMLN----EELSDKERQYSELEEEWKAEKA 471 Query: 287 KIEKHNHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEGRTKELGYTVKKHLQDLS 346 + + +LE A + A VGD R+S L G+ EL ++ Q L Sbjct: 472 SLSGTQTIKAELEQAKIAIEQARRVGDLARMSE------LQYGKIPELEKQLEAATQ-LE 524 Query: 347 GRISRARHNEL 357 G+ R N++ Sbjct: 525 GKTMRLLRNKV 535 >2GEN-A nrPDB Length = 197 Score = 30.0 bits (66), Expect = 1.5, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 61/154 (39%), Gaps = 32/154 (20%) Query: 123 GLDGKKDARQVTSNSLSGTQEDGLDDPRLEKLWHKAKTSGKFSGEELDKLWREFLHHKEK 182 G +KD ++ +L+ E G+D +E + + SG + L+ F +KE+ Sbjct: 4 GRSSRKD--EILQAALACFSEHGVDATTIEMIRDR-------SGASIGSLYHHF-GNKER 53 Query: 183 VH---------EYNVLLET-LSRTEEIHENV----ISPSDL----SDIKGSVLHSRHT-- 222 +H +Y LLE +R E V S D D +LHSR Sbjct: 54 IHGELYLAGIGQYAALLEAGFARARSAEETVRLLVTSYIDWVVANPDWARFILHSRGRVE 113 Query: 223 --ELKEKLRSINQGLDRLRRVSHQGYSTEAEFEE 254 EL E+LR+ NQ + GY E F E Sbjct: 114 AGELGERLRADNQAHFARIHAALAGYRAEGLFRE 147 >1YZY-A nrPDB Length = 413 Score = 30.0 bits (66), Expect = 1.5, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 21/31 (67%) Query: 269 LTDKELEAFREELKHFEAKIEKHNHYQKQLE 299 +T+K++E +RE+ HF+ +E+ H + +E Sbjct: 258 MTNKQVEKYREKAPHFQLDVEQAIHNENYIE 288 >3CEU-A nrPDB Length = 210 Score = 30.0 bits (66), Expect = 1.7, Method: Composition-based stats. Identities = 39/142 (27%), Positives = 58/142 (40%), Gaps = 22/142 (15%) Query: 143 EDGLDDPRLEKLWHKAKTSGKFSGEELDKLWREFLHHKEKVHEYNVLLETLSRTEEIHEN 202 E+GLD L K +T +S E L L E H + HE+ L E + IH N Sbjct: 24 EEGLDILHLRK----PETPAMYS-ERLLTLIPEKYHRRIVTHEHFYLKEEFNLMG-IHLN 77 Query: 203 VISPSDLSDIKGSVLHSRHTELKEKLRS-------INQGLDRLRRVSHQGYSTEAEFEEP 255 +PS+ D G V S H+ + K R ++ D + +V++ T E E Sbjct: 78 ARNPSEPHDYAGHVSCSCHSVEEVKNRKHFYDYVFMSPIYDSISKVNYYSTYTAEELRE- 136 Query: 256 RVIDLWDLAQSANLTDKELEAF 277 AQ A + D ++ A Sbjct: 137 --------AQKAKIIDSKVMAL 150 >1XG7-A nrPDB Length = 250 Score = 30.0 bits (66), Expect = 1.8, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 10/122 (8%) Query: 94 KKLKLDGLDEDGEKEARLIRNLNVILAKYGLDGKKDARQVTSNSLSGTQEDGLDDPRLEK 153 K + ++G E EK R L + D + + V +NSL Q G R E Sbjct: 17 KGIGIEGAKEVEEKVDRQFYALQYLFRHQ--DPEMFIKLVIANSLVSYQLTG----RGED 70 Query: 154 LWHKAKTSGKFSGEELDKLWREFLHHKEKVHEYNVLLET-LSRTEEIHENVISPSDLSDI 212 W + + FSG E+D +W+ + K L+E L+R ++ E +S L D+ Sbjct: 71 WWWE--FARYFSGREVDSIWKAYGEFLPKSKNNRRLIEAKLNRIRKV-EGFLSTLTLKDL 127 Query: 213 KG 214 +G Sbjct: 128 EG 129 >5TS9-A nrPDB Length = 173 Score = 29.7 bits (65), Expect = 2.2, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%) Query: 74 VRLAELHADLKIQERDELAWKKLKLDGLDEDGEKEARLIRNLNVILAKYGLDGKKDARQV 133 V L AD ++ D++A K DG++EA++I N + ++YGL +DA + Sbjct: 16 VPLVRSMAD-RLNTADQVALSKWDTGQPVYDGQREAQVIANAATMASEYGLTA-EDAINI 73 Query: 134 TSNSLSGTQE 143 S+ + +E Sbjct: 74 FSDQVEANKE 83 >3LG3-A nrPDB Length = 435 Score = 29.3 bits (64), Expect = 2.6, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 13/84 (15%) Query: 268 NLTDKELEAFREELKHFEAKIE------KHNHYQKQLEIAHEKLRHAESVGDGERVSRSR 321 NLTD+++ +F++EL K + H+ + ++AH + GE + Sbjct: 328 NLTDQQIASFQDELSAMGYKYQFITLAGIHSMWFNMFDLAH-------AYAQGEGMKHYV 380 Query: 322 EKHALLEGRTKELGYTVKKHLQDL 345 EK E + + GYT H Q++ Sbjct: 381 EKVQQPEFASVDRGYTFASHQQEV 404 >6NRU-A nrPDB Length = 206 Score = 29.3 bits (64), Expect = 2.6, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Query: 265 QSANLTDKE-LEAFREELKHFEAKIEKHNHYQKQLEIAHE 303 Q A T+ E +AF + ++ F A++ ++ HYQ L ++H+ Sbjct: 114 QHAIPTNGEGFQAFSQRVERFIARLSEYQHYQNILIVSHQ 153 >2H63-A nrPDB Length = 292 Score = 28.5 bits (62), Expect = 4.7, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 13/121 (10%) Query: 105 GEKEARLIRNLNVILAKYGLDGKKDARQVTSNSLSGTQEDGLDDPRLEKLWHKAKTSGKF 164 G R +RN + A L G R++ S+ G Q+ L+D + A + Sbjct: 16 GSVRMRDLRNPHPSSAFLNLIGFVSRREL--GSIDGVQQISLEDALSSQEVEVAYICSES 73 Query: 165 SGEELDKLWREFLHH-KEKVHEYNVLLETLSRTEEIHENVISPSDLSDIKGSVLHSRHTE 223 S E R+FL+ K + EY + L +L+ +E+ E L++ KG VLH H E Sbjct: 74 SSHE--DYIRQFLNAGKHVLVEYPMTL-SLAAAQELWE-------LAEQKGKVLHEEHVE 123 Query: 224 L 224 L Sbjct: 124 L 124 >4TMA-B nrPDB Length = 417 Score = 28.1 bits (61), Expect = 5.6, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 11/104 (10%) Query: 175 EFLHHKEKVHEYNVLLETLSRTEEIHENVISPSDLSDIKGSVLHSRHTELKEKLRSINQG 234 +++ E + +Y + + T +H N +P+ + G L +E + IN+ Sbjct: 160 QYIKDDEAMDQYQISIALDGAT--LHTNASAPA----LAGEALEKLVSEYNATQKMINRM 213 Query: 235 LDR-----LRRVSHQGYSTEAEFEEPRVIDLWDLAQSANLTDKE 273 R L+ + +Q TEA+ + + + W A + L DKE Sbjct: 214 ERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKE 257 >6ID1-L nrPDB Length = 802 Score = 27.7 bits (60), Expect = 8.6, Method: Composition-based stats. Identities = 38/146 (26%), Positives = 60/146 (41%), Gaps = 21/146 (14%) Query: 163 KFSGEELDKLWREFLHHKEKVHEYNVLLETLSRT-----EEIHENVISPSDLSDIKGSVL 217 KFS EEL K + E V + E S EE + V+ S + L Sbjct: 623 KFSKEELKKAQDVLVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLYLPGQSRYTRANL 682 Query: 218 HSRHTELK--EKLRSINQG-----------LDRLRRVSHQGYSTEAEFEEPRVIDLWDLA 264 S+ ++ EK IN+G +++ ++ GY + A ++ DLWD Sbjct: 683 ASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQI 742 Query: 265 QSANLTDKELEAFREELKHFEAKIEK 290 + A+L EL F E KH ++ I + Sbjct: 743 EQAHL---ELRTFEELKKHEDSAIPR 765 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.314 0.133 0.381 Lambda K H 0.267 0.0416 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,640,038 Number of Sequences: 36641 Number of extensions: 615773 Number of successful extensions: 1542 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 52 Number of HSP's that attempted gapping in prelim test: 1514 Number of HSP's gapped (non-prelim): 80 length of query: 357 length of database: 10,336,785 effective HSP length: 98 effective length of query: 259 effective length of database: 6,745,967 effective search space: 1747205453 effective search space used: 1747205453 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 60 (27.7 bits)