BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= P30419
(496 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
1RXT-A nrPDB 1038 0.0
6FZ3-A nrPDB 803 0.0
4C2X-A nrPDB 699 0.0
6B1L-A nrPDB 439 e-123
5T6E-A nrPDB 367 e-102
5AG6-A nrPDB 354 4e-98
2P6F-A nrPDB 338 5e-93
1IYL-A nrPDB 327 7e-90
6D72-A nrPDB 29 4.0
3WSY-A nrPDB 29 5.8
>1RXT-A nrPDB
Length = 496
Score = 1038 bits (2684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/496 (99%), Positives = 496/496 (100%)
Query: 1 MADESETAVKPPAPPLPQMMEGNGNGHEHCSDCENEEDNSYNRGGLSPANDTGAKKKKKK 60
MADESETAVKPPAPPLPQMMEGNGNGHEHCSDCENEEDNSYNRGGLSPANDTGAKKKKKK
Sbjct: 1 MADESETAVKPPAPPLPQMMEGNGNGHEHCSDCENEEDNSYNRGGLSPANDTGAKKKKKK 60
Query: 61 QKKKKEKGSETDSAQDQPVKMNSLPAERIQEIQKAIELFSVGQGPAKTMEEASKRSYQFW 120
QKKKKEKGSETDSAQDQPVKMNSLPAERIQEIQKAIELFSVGQGPAKTMEEASKRSYQFW
Sbjct: 61 QKKKKEKGSETDSAQDQPVKMNSLPAERIQEIQKAIELFSVGQGPAKTMEEASKRSYQFW 120
Query: 121 DTQPVPKLGEVVNTHGPVEPDKDNIRQEPYTLPQGFTWDALDLGDRGVLKELYTLLNENY 180
DTQPVPKLGEVVNTHGPVEPDKDNIRQEPYTLPQGFTWDALDLGDRGVLKELYTLLNENY
Sbjct: 121 DTQPVPKLGEVVNTHGPVEPDKDNIRQEPYTLPQGFTWDALDLGDRGVLKELYTLLNENY 180
Query: 181 VEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVRVVSSRKLVGFISAIPANIHIYDTEK 240
VEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVRVVSSRKLVGFISAIPANIHIYDTEK
Sbjct: 181 VEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVRVVSSRKLVGFISAIPANIHIYDTEK 240
Query: 241 KMVEINFLCVHKKLRSKRVAPVLIREITRRVHLEGIFQAVYTAGVVLPKPVGTCRYWHRS 300
KMVEINFLCVHKKLRSKRVAPVLIREITRRVHLEGIFQAVYTAGVVLPKPVGTCRYWHRS
Sbjct: 241 KMVEINFLCVHKKLRSKRVAPVLIREITRRVHLEGIFQAVYTAGVVLPKPVGTCRYWHRS 300
Query: 301 LNPRKLIEVKFSHLSRNMTMQRTMKLYRLPETPKTAGLRPMETKDIPVVHQLLTRYLKQF 360
LNPRKLIEVKFSHLSRNMTMQRTMKLYRLPETPKTAGLRPMETKDIPVVHQLLTRYLKQF
Sbjct: 301 LNPRKLIEVKFSHLSRNMTMQRTMKLYRLPETPKTAGLRPMETKDIPVVHQLLTRYLKQF 360
Query: 361 HLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMNHPTHKSLKAAY 420
HLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMNHPTHKSLKAAY
Sbjct: 361 HLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMNHPTHKSLKAAY 420
Query: 421 SFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYLYN 480
SFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYLYN
Sbjct: 421 SFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYLYN 480
Query: 481 WKCPSMGAEKVGLVLQ 496
WKCPSMGAEKVG+VLQ
Sbjct: 481 WKCPSMGAEKVGIVLQ 496
>6FZ3-A nrPDB
Length = 403
Score = 803 bits (2074), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/382 (100%), Positives = 382/382 (100%)
Query: 115 RSYQFWDTQPVPKLGEVVNTHGPVEPDKDNIRQEPYTLPQGFTWDALDLGDRGVLKELYT 174
RSYQFWDTQPVPKLGEVVNTHGPVEPDKDNIRQEPYTLPQGFTWDALDLGDRGVLKELYT
Sbjct: 22 RSYQFWDTQPVPKLGEVVNTHGPVEPDKDNIRQEPYTLPQGFTWDALDLGDRGVLKELYT 81
Query: 175 LLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVRVVSSRKLVGFISAIPANIH 234
LLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVRVVSSRKLVGFISAIPANIH
Sbjct: 82 LLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVRVVSSRKLVGFISAIPANIH 141
Query: 235 IYDTEKKMVEINFLCVHKKLRSKRVAPVLIREITRRVHLEGIFQAVYTAGVVLPKPVGTC 294
IYDTEKKMVEINFLCVHKKLRSKRVAPVLIREITRRVHLEGIFQAVYTAGVVLPKPVGTC
Sbjct: 142 IYDTEKKMVEINFLCVHKKLRSKRVAPVLIREITRRVHLEGIFQAVYTAGVVLPKPVGTC 201
Query: 295 RYWHRSLNPRKLIEVKFSHLSRNMTMQRTMKLYRLPETPKTAGLRPMETKDIPVVHQLLT 354
RYWHRSLNPRKLIEVKFSHLSRNMTMQRTMKLYRLPETPKTAGLRPMETKDIPVVHQLLT
Sbjct: 202 RYWHRSLNPRKLIEVKFSHLSRNMTMQRTMKLYRLPETPKTAGLRPMETKDIPVVHQLLT 261
Query: 355 RYLKQFHLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMNHPTHK 414
RYLKQFHLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMNHPTHK
Sbjct: 262 RYLKQFHLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMNHPTHK 321
Query: 415 SLKAAYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNL 474
SLKAAYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNL
Sbjct: 322 SLKAAYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNL 381
Query: 475 QYYLYNWKCPSMGAEKVGLVLQ 496
QYYLYNWKCPSMGAEKVGLVLQ
Sbjct: 382 QYYLYNWKCPSMGAEKVGLVLQ 403
>4C2X-A nrPDB
Length = 410
Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/394 (82%), Positives = 358/394 (90%), Gaps = 2/394 (0%)
Query: 103 QGPAKTMEEASKRSYQFWDTQPVPKLGEVVNTHGPVEPDKDNIRQEPYTLPQGFTWDALD 162
QGP M+EA+K YQFWDTQPVPKL EV+ +HG +EPDKDN+RQEPY+LPQGF WD LD
Sbjct: 19 QGPH--MDEAAKHRYQFWDTQPVPKLDEVITSHGAIEPDKDNVRQEPYSLPQGFMWDTLD 76
Query: 163 LGDRGVLKELYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVRVVSSRKL 222
L D VLKELYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWL QWHCGVRV S++KL
Sbjct: 77 LSDAEVLKELYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLLQWHCGVRVSSNKKL 136
Query: 223 VGFISAIPANIHIYDTEKKMVEINFLCVHKKLRSKRVAPVLIREITRRVHLEGIFQAVYT 282
VGFISAIPANI IYD+ KKMVEINFLCVHKKLRSKRVAPVLIREITRRV+LEGIFQAVYT
Sbjct: 137 VGFISAIPANIRIYDSVKKMVEINFLCVHKKLRSKRVAPVLIREITRRVNLEGIFQAVYT 196
Query: 283 AGVVLPKPVGTCRYWHRSLNPRKLIEVKFSHLSRNMTMQRTMKLYRLPETPKTAGLRPME 342
AGVVLPKP+ TCRYWHRSLNP+KL+EVKFSHLSRNMT+QRTMKLYRLP+ KT+GLRPME
Sbjct: 197 AGVVLPKPIATCRYWHRSLNPKKLVEVKFSHLSRNMTLQRTMKLYRLPDVTKTSGLRPME 256
Query: 343 TKDIPVVHQLLTRYLKQFHLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYT 402
KDI V +L+ YLKQFHL PVM +EEV HWF P+E+IIDTFVVE+ NG++TDFLSFYT
Sbjct: 257 PKDIKSVRELINTYLKQFHLAPVMDEEEVAHWFLPREHIIDTFVVESPNGKLTDFLSFYT 316
Query: 403 LPSTIMNHPTHKSLKAAYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFL 462
LPST+M+HP HKSLKAAYSFYN+HT+TPLLDLMSDAL+LAK KGFDVFNALDLMENKTFL
Sbjct: 317 LPSTVMHHPAHKSLKAAYSFYNIHTETPLLDLMSDALILAKSKGFDVFNALDLMENKTFL 376
Query: 463 EKLKFGIGDGNLQYYLYNWKCPSMGAEKVGLVLQ 496
EKLKFGIGDGNLQYYLYNW+CP +EKVGLVLQ
Sbjct: 377 EKLKFGIGDGNLQYYLYNWRCPGTDSEKVGLVLQ 410
>6B1L-A nrPDB
Length = 405
Score = 439 bits (1129), Expect = e-123, Method: Compositional matrix adjust.
Identities = 209/383 (54%), Positives = 275/383 (71%), Gaps = 5/383 (1%)
Query: 117 YQFWDTQPVPKLGEVVN--THGPVEPDK--DNIRQEPYTLPQGFTWDALDLGDRGVLKEL 172
Y+FW TQPVPK+ + N + P D +++R++ Y LP G++W D+ D E+
Sbjct: 23 YKFWYTQPVPKINDEFNESVNEPFISDNKVEDVRKDEYKLPPGYSWYVCDVKDEKDRSEI 82
Query: 173 YTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVRVVSSRKLVGFISAIPAN 232
YTLL +NYVEDDDN+FRF+YS EFLLWAL P +L WH GV+ +S KL+GFISAIP +
Sbjct: 83 YTLLTDNYVEDDDNIFRFNYSAEFLLWALTSPNYLKTWHIGVKYDASNKLIGFISAIPTD 142
Query: 233 IHIYDTEKKMVEINFLCVHKKLRSKRVAPVLIREITRRVHLEGIFQAVYTAGVVLPKPVG 292
I I+ KM E+NFLCVHK LRSKR+APVLI+EITRR++LE I+QA+YTAGV LPKPV
Sbjct: 143 ICIHKRTIKMAEVNFLCVHKTLRSKRLAPVLIKEITRRINLENIWQAIYTAGVYLPKPVS 202
Query: 293 TCRYWHRSLNPRKLIEVKFSHLSRNMTMQRTMKLYRLPETPKTAGLRPMETKDIPVVHQL 352
RY+HRS+N +KLIE+ FS L+ +TM R +KLYR+ +T +R M+ KD+ VH+L
Sbjct: 203 DARYYHRSINVKKLIEIGFSSLNSRLTMSRAIKLYRVEDTLNIKNMRLMKKKDVEGVHKL 262
Query: 353 LTRYLKQFHLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMNHPT 412
L YL+QF+L V ++EE+ HWF P EN+I T+V E NG++ D +SFY+LPS I+ +
Sbjct: 263 LGSYLEQFNLYAVFTKEEIAHWFLPIENVIYTYVNEE-NGKIKDMISFYSLPSQILGNDK 321
Query: 413 HKSLKAAYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDG 472
+ +L AAYSFYNV T LM DA++LAK FDVFNAL++M+NK+ E LKFG GDG
Sbjct: 322 YSTLNAAYSFYNVTTTATFKQLMQDAILLAKRNNFDVFNALEVMQNKSVFEDLKFGEGDG 381
Query: 473 NLQYYLYNWKCPSMGAEKVGLVL 495
+L+YYLYNWKC S VG+VL
Sbjct: 382 SLKYYLYNWKCASFAPAHVGIVL 404
>5T6E-A nrPDB
Length = 411
Score = 367 bits (942), Expect = e-102, Method: Compositional matrix adjust.
Identities = 193/380 (50%), Positives = 249/380 (65%), Gaps = 20/380 (5%)
Query: 122 TQPVPKLGEV-VNTHGPVEP-DKDNIRQEPYTLPQGFTWDALDLGDRGVLKELYTLLNEN 179
TQPVP+ E +T GP++ D + + +EP L +GF W LDL + L+EL+ LL +
Sbjct: 6 TQPVPRFDETSTDTGGPIKIIDPEKVSKEPDALLEGFEWATLDLTNETELQELWDLLTYH 65
Query: 180 YVEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVRVVSSRKLVGFISAIPANIHIYDTE 239
YVEDD+ MFRF YS FL WAL PGW +WH GVR SRKLV I +P I++ + +
Sbjct: 66 YVEDDNAMFRFRYSQSFLHWALMSPGWKKEWHVGVRATKSRKLVASICGVPTEINVRNQK 125
Query: 240 KKMVEINFLCVHKKLRSKRVAPVLIREITRRVHLEGIFQAVYTAGVVLPKPVGTCRYWHR 299
K+VEINFLC+HKKLRSKR+ PVLI+EITRR +L GI+QA+YTAGVVLP PV +CRY+HR
Sbjct: 126 LKVVEINFLCIHKKLRSKRLTPVLIKEITRRCYLNGIYQAIYTAGVVLPTPVSSCRYYHR 185
Query: 300 SLNPRKLIEVKFSHLSRNMTMQRTMKLYRLPETPKTAGLRPMETKDIPVVHQLLTRYLKQ 359
L+ KL EV FS L T R + LP T T GLRPME KDI VH LL RYL +
Sbjct: 186 PLDWLKLYEVGFSPLPAGSTKARQITKNHLPSTTSTPGLRPMEPKDIDTVHDLLQRYLSR 245
Query: 360 FHLTPVMSQEEVEHWFY-----PQENIIDTFVVEN-ANGEVTDFLSFYTLPSTIMNHPTH 413
F L ++EEV+HW +E ++ +VVE+ ++TDF SFY L ST++ +P H
Sbjct: 246 FALNQAFTREEVDHWLVHKPETVKEQVVWAYVVEDPETHKITDFFSFYNLESTVIQNPKH 305
Query: 414 KSLKAAYSFYNVHTQTP-----------LLDLMSDALVLAKMKGFDVFNALDLMENKTFL 462
+++AAY +Y T+T LL LM+DAL+LAK FDVFNAL L +N FL
Sbjct: 306 DNVRAAYLYYYA-TETAFTNNMKALKERLLMLMNDALILAKKAHFDVFNALTLHDNPLFL 364
Query: 463 EKLKFGIGDGNLQYYLYNWK 482
E+LKFG GDG L +YLYN++
Sbjct: 365 EQLKFGAGDGQLHFYLYNYR 384
>5AG6-A nrPDB
Length = 438
Score = 354 bits (909), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 178/424 (41%), Positives = 263/424 (62%), Gaps = 37/424 (8%)
Query: 103 QGPAKTMEEASKRSYQFWDTQPVPKL---GEVVNTHGPVEPDKD--NIRQEPYTLPQGFT 157
QGP+ S ++ FW TQPVP+ E + GP++ K +I +EPY + F
Sbjct: 20 QGPSN-----SDAAHAFWSTQPVPQTEDETEKIVFAGPMDEPKTVADIPEEPYPIASTFE 74
Query: 158 WDALDLGDRGVLKELYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVRVV 217
W ++ + +Y LL +NYVEDDD+MFRF+YS EFL WAL PP ++P WH VR
Sbjct: 75 WWTPNMEAADDIHAIYELLRDNYVEDDDSMFRFNYSEEFLQWALCPPNYIPDWHVAVRRK 134
Query: 218 SSRKLVGFISAIPANIHI---------------------YDTEKKMVEINFLCVHKKLRS 256
+ +KL+ FI+ +P + + YD + + EINFLCVHK+LR
Sbjct: 135 ADKKLLAFIAGVPVTLRMGTPKYMKVKAQEKGEGEEAAKYDEPRHICEINFLCVHKQLRE 194
Query: 257 KRVAPVLIREITRRVHLEGIFQAVYTAGVVLPKPVGTCRYWHRSLNPRKLIEVKFSHL-S 315
KR+AP+LI+E TRRV+ ++QAVYTAGV+LP P + +Y+HRSLNP KL+E++FS + +
Sbjct: 195 KRLAPILIKEATRRVNRTNVWQAVYTAGVLLPTPYASGQYFHRSLNPEKLVEIRFSGIPA 254
Query: 316 RNMTMQRTMKL----YRLPETPKTAGLRPMETKDIPVVHQLLTRYLKQFHLTPVMSQEEV 371
+ Q M + Y+LP PK +GLR M+ D+P V ++L YL F + PV S E+
Sbjct: 255 QYQKFQNPMAMLKRNYQLPSAPKNSGLREMKPSDVPQVRRILMNYLDSFDVGPVFSDAEI 314
Query: 372 EHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMNHPTHKSLKAAYSFYNVHTQTPL 431
H+ P++ ++ T+VVEN + +VTDF SFY +PST++ + + L AAY Y T PL
Sbjct: 315 SHYLLPRDGVVFTYVVEN-DKKVTDFFSFYRIPSTVIGNSNYNLLNAAYVHYYAATSIPL 373
Query: 432 LDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYLYNWKCPSMGAEKV 491
L+ D L++A +GFDV N +++++N++F+E+LKFG GDG+L+YY YNW P + +V
Sbjct: 374 HQLILDLLIVAHSRGFDVCNMVEILDNRSFVEQLKFGAGDGHLRYYFYNWAYPKIKPSQV 433
Query: 492 GLVL 495
LV+
Sbjct: 434 ALVM 437
>2P6F-A nrPDB
Length = 455
Score = 338 bits (866), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 176/399 (44%), Positives = 246/399 (61%), Gaps = 25/399 (6%)
Query: 110 EEASKRSYQFWDTQPVPKLGEVVNTHGPVEPDK--DNIRQEPYTLPQGFTWDALDLGDRG 167
++ + + ++FW TQPV E V GP++ K ++I +P L F W ++D+ ++
Sbjct: 31 QKKAMKDHKFWRTQPVKDFDEKVVEEGPIDKPKTPEDISDKPLPLLSSFEWCSIDVDNKK 90
Query: 168 VLKELYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVRVVSSRKLVGFIS 227
L++++ LLNENYVED D FRF+Y+ EF WAL+ PGW WH GVRV ++KLV FIS
Sbjct: 91 QLEDVFVLLNENYVEDRDAGFRFNYTKEFFNWALKSPGWKKDWHIGVRVKETQKLVAFIS 150
Query: 228 AIPANIHIYDTEKKMVEINFLCVHKKLRSKRVAPVLIREITRRVHLEGIFQAVYTAGVVL 287
AIP + + + VEINFLCVHK+LRSKR+ PVLI+EITRRV+ I+ A+YTAG+VL
Sbjct: 151 AIPVTLGVRGKQVPSVEINFLCVHKQLRSKRLTPVLIKEITRRVNKCDIWHALYTAGIVL 210
Query: 288 PKPVGTCRYWHRSLNPRKLIEVKFSHLSRNMTMQRTMKLYRLPETPKTAGLRPMETKDIP 347
P PV TCRY HR LN +KL EV F+ L T + + LP KTAGLR ++ +DI
Sbjct: 211 PAPVSTCRYTHRPLNWKKLYEVDFTGLPDGHTEEDMIAENALPAKTKTAGLRKLKKEDID 270
Query: 348 VVHQLLTRYLKQFHLTPVMSQEEVEHWFYPQEN------IIDTFVVENANGEVTDFLSFY 401
V +L RY +F L + ++EE EH F +E+ +I ++VVE +G++TDF SFY
Sbjct: 271 QVFELFKRYQSRFELIQIFTKEEFEHNFIGEESLPLDKQVIFSYVVEQPDGKITDFFSFY 330
Query: 402 TLPSTIMNHPTHKSLKAAYSFYNV-----------------HTQTPLLDLMSDALVLAKM 444
+LP TI+N+ +K L Y +Y +T L +L+ DA +LAK
Sbjct: 331 SLPFTILNNTKYKDLGIGYLYYYATDADFQFKDRFDPKATKALKTRLCELIYDACILAKN 390
Query: 445 KGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYLYNWKC 483
DVFNAL +N FL+ LKFG GDG L +YL+N++
Sbjct: 391 ANMDVFNALTSQDNTLFLDDLKFGPGDGFLNFYLFNYRA 429
>1IYL-A nrPDB
Length = 392
Score = 327 bits (838), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 168/369 (45%), Positives = 229/369 (62%), Gaps = 16/369 (4%)
Query: 136 GPVEPDK--DNIRQEPYTLPQGFTWDALDLGDRGVLKELYTLLNENYVEDDDNMFRFDYS 193
GP++ K +++ +P L F W LD+ D L ELY LL +NYVED D FRF YS
Sbjct: 2 GPIDKLKTPEDVPNDPLPLISDFEWSTLDIDDNLQLDELYKLLYDNYVEDIDATFRFKYS 61
Query: 194 PEFLLWALRPPGWLPQWHCGVRVVSSRKLVGFISAIPANIHIYDTEKKM--VEINFLCVH 251
EF WAL+PPGW WH GVRV S+ KLV FI+A P + + K + VEINFLC+H
Sbjct: 62 HEFFQWALKPPGWRKDWHVGVRVKSTGKLVAFIAATPVTFKLNKSNKVIDSVEINFLCIH 121
Query: 252 KKLRSKRVAPVLIREITRRVHLEGIFQAVYTAGVVLPKPVGTCRYWHRSLNPRKLIEVKF 311
KKLR+KR+APVLI+EITRRV+ + I+QA+YT G +LP P+ TCRY HR +N KL +V F
Sbjct: 122 KKLRNKRLAPVLIKEITRRVNKQNIWQALYTGGSILPTPLTTCRYQHRPINWSKLHDVGF 181
Query: 312 SHLSRNMTMQRTMKLYRLPETPKTAGLRPMETKDIPVVHQLLTRYLKQFHLTPVMSQEEV 371
SHL N T + Y LP PK GLRPM KD+ V LL +Y ++F + + ++EE
Sbjct: 182 SHLPPNQTKSSMVASYTLPNNPKLKGLRPMTGKDVSTVLSLLYKYQERFDIVQLFTEEEF 241
Query: 372 EHWFYPQE-----NIIDTFVVENANGEVTDFLSFYTLPSTIMNHPTHKSLKAAYSFYNV- 425
+HW + N++ ++VVE+ NG +TD+ S+Y LP T++++ H L AY FY
Sbjct: 242 KHWMLGHDENSDSNVVKSYVVEDENGIITDYFSYYLLPFTVLDNAQHDELGIAYLFYYAS 301
Query: 426 ------HTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYLY 479
+ + L +L++DAL+ +K G DVFN L +N FL+ KFG GDG L YYL+
Sbjct: 302 DSFEKPNYKKRLNELITDALITSKKFGVDVFNCLTCQDNTYFLKDCKFGSGDGFLNYYLF 361
Query: 480 NWKCPSMGA 488
N++ M
Sbjct: 362 NYRTFPMDG 370
>6D72-A nrPDB
Length = 184
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 332 TPKTAGLRPMETKDIPVVHQL 352
T + LRP+E +D+P VHQL
Sbjct: 6 TTSSVRLRPLEREDLPFVHQL 26
>3WSY-A nrPDB
Length = 678
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 431 LLDLMSDALVLAKMKGFDVFNALDLMEN-KTFLEKLKFGIGD 471
++ L D+L LA+ K DV+ + D ++ K +KL FG+G+
Sbjct: 33 IVALARDSLALARPKSSDVYVSYDYGKSFKKISDKLNFGLGN 74
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
1RXT-A nrPDB 942 0.0
6FZ3-A nrPDB 709 0.0
4C2X-A nrPDB 703 0.0
6B1L-A nrPDB 611 e-175
2P6F-A nrPDB 598 e-171
5AG6-A nrPDB 598 e-171
5T6E-A nrPDB 581 e-166
1IYL-A nrPDB 570 e-163
Sequences not found previously or not previously below threshold:
1VHS-A nrPDB 35 0.11
1Z5X-E nrPDB 33 0.31
2CJU-H nrPDB 32 0.51
2FAU-A nrPDB 32 0.60
6CV9-A nrPDB 31 1.2
1QB4-A nrPDB 31 1.4
2G1D-A nrPDB 30 1.8
6C95-D nrPDB 30 2.3
1Z5X-U nrPDB 30 2.6
4PF1-A nrPDB 30 2.9
2JES-A nrPDB 29 5.4
CONVERGED!
>1RXT-A nrPDB
Length = 496
Score = 942 bits (2434), Expect = 0.0, Method: Composition-based stats.
Identities = 495/496 (99%), Positives = 496/496 (100%)
Query: 1 MADESETAVKPPAPPLPQMMEGNGNGHEHCSDCENEEDNSYNRGGLSPANDTGAKKKKKK 60
MADESETAVKPPAPPLPQMMEGNGNGHEHCSDCENEEDNSYNRGGLSPANDTGAKKKKKK
Sbjct: 1 MADESETAVKPPAPPLPQMMEGNGNGHEHCSDCENEEDNSYNRGGLSPANDTGAKKKKKK 60
Query: 61 QKKKKEKGSETDSAQDQPVKMNSLPAERIQEIQKAIELFSVGQGPAKTMEEASKRSYQFW 120
QKKKKEKGSETDSAQDQPVKMNSLPAERIQEIQKAIELFSVGQGPAKTMEEASKRSYQFW
Sbjct: 61 QKKKKEKGSETDSAQDQPVKMNSLPAERIQEIQKAIELFSVGQGPAKTMEEASKRSYQFW 120
Query: 121 DTQPVPKLGEVVNTHGPVEPDKDNIRQEPYTLPQGFTWDALDLGDRGVLKELYTLLNENY 180
DTQPVPKLGEVVNTHGPVEPDKDNIRQEPYTLPQGFTWDALDLGDRGVLKELYTLLNENY
Sbjct: 121 DTQPVPKLGEVVNTHGPVEPDKDNIRQEPYTLPQGFTWDALDLGDRGVLKELYTLLNENY 180
Query: 181 VEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVRVVSSRKLVGFISAIPANIHIYDTEK 240
VEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVRVVSSRKLVGFISAIPANIHIYDTEK
Sbjct: 181 VEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVRVVSSRKLVGFISAIPANIHIYDTEK 240
Query: 241 KMVEINFLCVHKKLRSKRVAPVLIREITRRVHLEGIFQAVYTAGVVLPKPVGTCRYWHRS 300
KMVEINFLCVHKKLRSKRVAPVLIREITRRVHLEGIFQAVYTAGVVLPKPVGTCRYWHRS
Sbjct: 241 KMVEINFLCVHKKLRSKRVAPVLIREITRRVHLEGIFQAVYTAGVVLPKPVGTCRYWHRS 300
Query: 301 LNPRKLIEVKFSHLSRNMTMQRTMKLYRLPETPKTAGLRPMETKDIPVVHQLLTRYLKQF 360
LNPRKLIEVKFSHLSRNMTMQRTMKLYRLPETPKTAGLRPMETKDIPVVHQLLTRYLKQF
Sbjct: 301 LNPRKLIEVKFSHLSRNMTMQRTMKLYRLPETPKTAGLRPMETKDIPVVHQLLTRYLKQF 360
Query: 361 HLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMNHPTHKSLKAAY 420
HLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMNHPTHKSLKAAY
Sbjct: 361 HLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMNHPTHKSLKAAY 420
Query: 421 SFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYLYN 480
SFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYLYN
Sbjct: 421 SFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYLYN 480
Query: 481 WKCPSMGAEKVGLVLQ 496
WKCPSMGAEKVG+VLQ
Sbjct: 481 WKCPSMGAEKVGIVLQ 496
>6FZ3-A nrPDB
Length = 403
Score = 709 bits (1830), Expect = 0.0, Method: Composition-based stats.
Identities = 382/382 (100%), Positives = 382/382 (100%)
Query: 115 RSYQFWDTQPVPKLGEVVNTHGPVEPDKDNIRQEPYTLPQGFTWDALDLGDRGVLKELYT 174
RSYQFWDTQPVPKLGEVVNTHGPVEPDKDNIRQEPYTLPQGFTWDALDLGDRGVLKELYT
Sbjct: 22 RSYQFWDTQPVPKLGEVVNTHGPVEPDKDNIRQEPYTLPQGFTWDALDLGDRGVLKELYT 81
Query: 175 LLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVRVVSSRKLVGFISAIPANIH 234
LLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVRVVSSRKLVGFISAIPANIH
Sbjct: 82 LLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVRVVSSRKLVGFISAIPANIH 141
Query: 235 IYDTEKKMVEINFLCVHKKLRSKRVAPVLIREITRRVHLEGIFQAVYTAGVVLPKPVGTC 294
IYDTEKKMVEINFLCVHKKLRSKRVAPVLIREITRRVHLEGIFQAVYTAGVVLPKPVGTC
Sbjct: 142 IYDTEKKMVEINFLCVHKKLRSKRVAPVLIREITRRVHLEGIFQAVYTAGVVLPKPVGTC 201
Query: 295 RYWHRSLNPRKLIEVKFSHLSRNMTMQRTMKLYRLPETPKTAGLRPMETKDIPVVHQLLT 354
RYWHRSLNPRKLIEVKFSHLSRNMTMQRTMKLYRLPETPKTAGLRPMETKDIPVVHQLLT
Sbjct: 202 RYWHRSLNPRKLIEVKFSHLSRNMTMQRTMKLYRLPETPKTAGLRPMETKDIPVVHQLLT 261
Query: 355 RYLKQFHLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMNHPTHK 414
RYLKQFHLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMNHPTHK
Sbjct: 262 RYLKQFHLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMNHPTHK 321
Query: 415 SLKAAYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNL 474
SLKAAYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNL
Sbjct: 322 SLKAAYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNL 381
Query: 475 QYYLYNWKCPSMGAEKVGLVLQ 496
QYYLYNWKCPSMGAEKVGLVLQ
Sbjct: 382 QYYLYNWKCPSMGAEKVGLVLQ 403
>4C2X-A nrPDB
Length = 410
Score = 703 bits (1814), Expect = 0.0, Method: Composition-based stats.
Identities = 326/394 (82%), Positives = 358/394 (90%), Gaps = 2/394 (0%)
Query: 103 QGPAKTMEEASKRSYQFWDTQPVPKLGEVVNTHGPVEPDKDNIRQEPYTLPQGFTWDALD 162
QGP M+EA+K YQFWDTQPVPKL EV+ +HG +EPDKDN+RQEPY+LPQGF WD LD
Sbjct: 19 QGPH--MDEAAKHRYQFWDTQPVPKLDEVITSHGAIEPDKDNVRQEPYSLPQGFMWDTLD 76
Query: 163 LGDRGVLKELYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVRVVSSRKL 222
L D VLKELYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWL QWHCGVRV S++KL
Sbjct: 77 LSDAEVLKELYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLLQWHCGVRVSSNKKL 136
Query: 223 VGFISAIPANIHIYDTEKKMVEINFLCVHKKLRSKRVAPVLIREITRRVHLEGIFQAVYT 282
VGFISAIPANI IYD+ KKMVEINFLCVHKKLRSKRVAPVLIREITRRV+LEGIFQAVYT
Sbjct: 137 VGFISAIPANIRIYDSVKKMVEINFLCVHKKLRSKRVAPVLIREITRRVNLEGIFQAVYT 196
Query: 283 AGVVLPKPVGTCRYWHRSLNPRKLIEVKFSHLSRNMTMQRTMKLYRLPETPKTAGLRPME 342
AGVVLPKP+ TCRYWHRSLNP+KL+EVKFSHLSRNMT+QRTMKLYRLP+ KT+GLRPME
Sbjct: 197 AGVVLPKPIATCRYWHRSLNPKKLVEVKFSHLSRNMTLQRTMKLYRLPDVTKTSGLRPME 256
Query: 343 TKDIPVVHQLLTRYLKQFHLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYT 402
KDI V +L+ YLKQFHL PVM +EEV HWF P+E+IIDTFVVE+ NG++TDFLSFYT
Sbjct: 257 PKDIKSVRELINTYLKQFHLAPVMDEEEVAHWFLPREHIIDTFVVESPNGKLTDFLSFYT 316
Query: 403 LPSTIMNHPTHKSLKAAYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFL 462
LPST+M+HP HKSLKAAYSFYN+HT+TPLLDLMSDAL+LAK KGFDVFNALDLMENKTFL
Sbjct: 317 LPSTVMHHPAHKSLKAAYSFYNIHTETPLLDLMSDALILAKSKGFDVFNALDLMENKTFL 376
Query: 463 EKLKFGIGDGNLQYYLYNWKCPSMGAEKVGLVLQ 496
EKLKFGIGDGNLQYYLYNW+CP +EKVGLVLQ
Sbjct: 377 EKLKFGIGDGNLQYYLYNWRCPGTDSEKVGLVLQ 410
>6B1L-A nrPDB
Length = 405
Score = 611 bits (1575), Expect = e-175, Method: Composition-based stats.
Identities = 209/384 (54%), Positives = 275/384 (71%), Gaps = 5/384 (1%)
Query: 116 SYQFWDTQPVPKLGEVVNT--HGPVEPDK--DNIRQEPYTLPQGFTWDALDLGDRGVLKE 171
Y+FW TQPVPK+ + N + P D +++R++ Y LP G++W D+ D E
Sbjct: 22 DYKFWYTQPVPKINDEFNESVNEPFISDNKVEDVRKDEYKLPPGYSWYVCDVKDEKDRSE 81
Query: 172 LYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVRVVSSRKLVGFISAIPA 231
+YTLL +NYVEDDDN+FRF+YS EFLLWAL P +L WH GV+ +S KL+GFISAIP
Sbjct: 82 IYTLLTDNYVEDDDNIFRFNYSAEFLLWALTSPNYLKTWHIGVKYDASNKLIGFISAIPT 141
Query: 232 NIHIYDTEKKMVEINFLCVHKKLRSKRVAPVLIREITRRVHLEGIFQAVYTAGVVLPKPV 291
+I I+ KM E+NFLCVHK LRSKR+APVLI+EITRR++LE I+QA+YTAGV LPKPV
Sbjct: 142 DICIHKRTIKMAEVNFLCVHKTLRSKRLAPVLIKEITRRINLENIWQAIYTAGVYLPKPV 201
Query: 292 GTCRYWHRSLNPRKLIEVKFSHLSRNMTMQRTMKLYRLPETPKTAGLRPMETKDIPVVHQ 351
RY+HRS+N +KLIE+ FS L+ +TM R +KLYR+ +T +R M+ KD+ VH+
Sbjct: 202 SDARYYHRSINVKKLIEIGFSSLNSRLTMSRAIKLYRVEDTLNIKNMRLMKKKDVEGVHK 261
Query: 352 LLTRYLKQFHLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMNHP 411
LL YL+QF+L V ++EE+ HWF P EN+I T+V E NG++ D +SFY+LPS I+ +
Sbjct: 262 LLGSYLEQFNLYAVFTKEEIAHWFLPIENVIYTYVNE-ENGKIKDMISFYSLPSQILGND 320
Query: 412 THKSLKAAYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGD 471
+ +L AAYSFYNV T LM DA++LAK FDVFNAL++M+NK+ E LKFG GD
Sbjct: 321 KYSTLNAAYSFYNVTTTATFKQLMQDAILLAKRNNFDVFNALEVMQNKSVFEDLKFGEGD 380
Query: 472 GNLQYYLYNWKCPSMGAEKVGLVL 495
G+L+YYLYNWKC S VG+VL
Sbjct: 381 GSLKYYLYNWKCASFAPAHVGIVL 404
>2P6F-A nrPDB
Length = 455
Score = 598 bits (1543), Expect = e-171, Method: Composition-based stats.
Identities = 176/404 (43%), Positives = 246/404 (60%), Gaps = 25/404 (6%)
Query: 110 EEASKRSYQFWDTQPVPKLGEVVNTHGPVEPDK--DNIRQEPYTLPQGFTWDALDLGDRG 167
++ + + ++FW TQPV E V GP++ K ++I +P L F W ++D+ ++
Sbjct: 31 QKKAMKDHKFWRTQPVKDFDEKVVEEGPIDKPKTPEDISDKPLPLLSSFEWCSIDVDNKK 90
Query: 168 VLKELYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVRVVSSRKLVGFIS 227
L++++ LLNENYVED D FRF+Y+ EF WAL+ PGW WH GVRV ++KLV FIS
Sbjct: 91 QLEDVFVLLNENYVEDRDAGFRFNYTKEFFNWALKSPGWKKDWHIGVRVKETQKLVAFIS 150
Query: 228 AIPANIHIYDTEKKMVEINFLCVHKKLRSKRVAPVLIREITRRVHLEGIFQAVYTAGVVL 287
AIP + + + VEINFLCVHK+LRSKR+ PVLI+EITRRV+ I+ A+YTAG+VL
Sbjct: 151 AIPVTLGVRGKQVPSVEINFLCVHKQLRSKRLTPVLIKEITRRVNKCDIWHALYTAGIVL 210
Query: 288 PKPVGTCRYWHRSLNPRKLIEVKFSHLSRNMTMQRTMKLYRLPETPKTAGLRPMETKDIP 347
P PV TCRY HR LN +KL EV F+ L T + + LP KTAGLR ++ +DI
Sbjct: 211 PAPVSTCRYTHRPLNWKKLYEVDFTGLPDGHTEEDMIAENALPAKTKTAGLRKLKKEDID 270
Query: 348 VVHQLLTRYLKQFHLTPVMSQEEVEHWFYPQE------NIIDTFVVENANGEVTDFLSFY 401
V +L RY +F L + ++EE EH F +E +I ++VVE +G++TDF SFY
Sbjct: 271 QVFELFKRYQSRFELIQIFTKEEFEHNFIGEESLPLDKQVIFSYVVEQPDGKITDFFSFY 330
Query: 402 TLPSTIMNHPTHKSLKAAYSFYNV-----------------HTQTPLLDLMSDALVLAKM 444
+LP TI+N+ +K L Y +Y +T L +L+ DA +LAK
Sbjct: 331 SLPFTILNNTKYKDLGIGYLYYYATDADFQFKDRFDPKATKALKTRLCELIYDACILAKN 390
Query: 445 KGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYLYNWKCPSMGA 488
DVFNAL +N FL+ LKFG GDG L +YL+N++ +
Sbjct: 391 ANMDVFNALTSQDNTLFLDDLKFGPGDGFLNFYLFNYRAKPITG 434
>5AG6-A nrPDB
Length = 438
Score = 598 bits (1542), Expect = e-171, Method: Composition-based stats.
Identities = 178/424 (41%), Positives = 262/424 (61%), Gaps = 37/424 (8%)
Query: 103 QGPAKTMEEASKRSYQFWDTQPVPKL---GEVVNTHGPVEPDKD--NIRQEPYTLPQGFT 157
QGP+ S ++ FW TQPVP+ E + GP++ K +I +EPY + F
Sbjct: 20 QGPSN-----SDAAHAFWSTQPVPQTEDETEKIVFAGPMDEPKTVADIPEEPYPIASTFE 74
Query: 158 WDALDLGDRGVLKELYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVRVV 217
W ++ + +Y LL +NYVEDDD+MFRF+YS EFL WAL PP ++P WH VR
Sbjct: 75 WWTPNMEAADDIHAIYELLRDNYVEDDDSMFRFNYSEEFLQWALCPPNYIPDWHVAVRRK 134
Query: 218 SSRKLVGFISAIPANIHI---------------------YDTEKKMVEINFLCVHKKLRS 256
+ +KL+ FI+ +P + + YD + + EINFLCVHK+LR
Sbjct: 135 ADKKLLAFIAGVPVTLRMGTPKYMKVKAQEKGEGEEAAKYDEPRHICEINFLCVHKQLRE 194
Query: 257 KRVAPVLIREITRRVHLEGIFQAVYTAGVVLPKPVGTCRYWHRSLNPRKLIEVKFSHLS- 315
KR+AP+LI+E TRRV+ ++QAVYTAGV+LP P + +Y+HRSLNP KL+E++FS +
Sbjct: 195 KRLAPILIKEATRRVNRTNVWQAVYTAGVLLPTPYASGQYFHRSLNPEKLVEIRFSGIPA 254
Query: 316 RNMTMQRTMKL----YRLPETPKTAGLRPMETKDIPVVHQLLTRYLKQFHLTPVMSQEEV 371
+ Q M + Y+LP PK +GLR M+ D+P V ++L YL F + PV S E+
Sbjct: 255 QYQKFQNPMAMLKRNYQLPSAPKNSGLREMKPSDVPQVRRILMNYLDSFDVGPVFSDAEI 314
Query: 372 EHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMNHPTHKSLKAAYSFYNVHTQTPL 431
H+ P++ ++ T+VVEN + +VTDF SFY +PST++ + + L AAY Y T PL
Sbjct: 315 SHYLLPRDGVVFTYVVEN-DKKVTDFFSFYRIPSTVIGNSNYNLLNAAYVHYYAATSIPL 373
Query: 432 LDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYLYNWKCPSMGAEKV 491
L+ D L++A +GFDV N +++++N++F+E+LKFG GDG+L+YY YNW P + +V
Sbjct: 374 HQLILDLLIVAHSRGFDVCNMVEILDNRSFVEQLKFGAGDGHLRYYFYNWAYPKIKPSQV 433
Query: 492 GLVL 495
LV+
Sbjct: 434 ALVM 437
>5T6E-A nrPDB
Length = 411
Score = 581 bits (1497), Expect = e-166, Method: Composition-based stats.
Identities = 191/385 (49%), Positives = 248/385 (64%), Gaps = 18/385 (4%)
Query: 122 TQPVPKLGEV-VNTHGPVEP-DKDNIRQEPYTLPQGFTWDALDLGDRGVLKELYTLLNEN 179
TQPVP+ E +T GP++ D + + +EP L +GF W LDL + L+EL+ LL +
Sbjct: 6 TQPVPRFDETSTDTGGPIKIIDPEKVSKEPDALLEGFEWATLDLTNETELQELWDLLTYH 65
Query: 180 YVEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVRVVSSRKLVGFISAIPANIHIYDTE 239
YVEDD+ MFRF YS FL WAL PGW +WH GVR SRKLV I +P I++ + +
Sbjct: 66 YVEDDNAMFRFRYSQSFLHWALMSPGWKKEWHVGVRATKSRKLVASICGVPTEINVRNQK 125
Query: 240 KKMVEINFLCVHKKLRSKRVAPVLIREITRRVHLEGIFQAVYTAGVVLPKPVGTCRYWHR 299
K+VEINFLC+HKKLRSKR+ PVLI+EITRR +L GI+QA+YTAGVVLP PV +CRY+HR
Sbjct: 126 LKVVEINFLCIHKKLRSKRLTPVLIKEITRRCYLNGIYQAIYTAGVVLPTPVSSCRYYHR 185
Query: 300 SLNPRKLIEVKFSHLSRNMTMQRTMKLYRLPETPKTAGLRPMETKDIPVVHQLLTRYLKQ 359
L+ KL EV FS L T R + LP T T GLRPME KDI VH LL RYL +
Sbjct: 186 PLDWLKLYEVGFSPLPAGSTKARQITKNHLPSTTSTPGLRPMEPKDIDTVHDLLQRYLSR 245
Query: 360 FHLTPVMSQEEVEHWFY-----PQENIIDTFVVENA-NGEVTDFLSFYTLPSTIMNHPTH 413
F L ++EEV+HW +E ++ +VVE+ ++TDF SFY L ST++ +P H
Sbjct: 246 FALNQAFTREEVDHWLVHKPETVKEQVVWAYVVEDPETHKITDFFSFYNLESTVIQNPKH 305
Query: 414 KSLKAAYSFYNV----------HTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLE 463
+++AAY +Y + LL LM+DAL+LAK FDVFNAL L +N FLE
Sbjct: 306 DNVRAAYLYYYATETAFTNNMKALKERLLMLMNDALILAKKAHFDVFNALTLHDNPLFLE 365
Query: 464 KLKFGIGDGNLQYYLYNWKCPSMGA 488
+LKFG GDG L +YLYN++ +
Sbjct: 366 QLKFGAGDGQLHFYLYNYRTAPVPG 390
>1IYL-A nrPDB
Length = 392
Score = 570 bits (1469), Expect = e-163, Method: Composition-based stats.
Identities = 168/370 (45%), Positives = 229/370 (61%), Gaps = 16/370 (4%)
Query: 135 HGPVEPDK--DNIRQEPYTLPQGFTWDALDLGDRGVLKELYTLLNENYVEDDDNMFRFDY 192
GP++ K +++ +P L F W LD+ D L ELY LL +NYVED D FRF Y
Sbjct: 1 EGPIDKLKTPEDVPNDPLPLISDFEWSTLDIDDNLQLDELYKLLYDNYVEDIDATFRFKY 60
Query: 193 SPEFLLWALRPPGWLPQWHCGVRVVSSRKLVGFISAIPANIHIYDTEKKM--VEINFLCV 250
S EF WAL+PPGW WH GVRV S+ KLV FI+A P + + K + VEINFLC+
Sbjct: 61 SHEFFQWALKPPGWRKDWHVGVRVKSTGKLVAFIAATPVTFKLNKSNKVIDSVEINFLCI 120
Query: 251 HKKLRSKRVAPVLIREITRRVHLEGIFQAVYTAGVVLPKPVGTCRYWHRSLNPRKLIEVK 310
HKKLR+KR+APVLI+EITRRV+ + I+QA+YT G +LP P+ TCRY HR +N KL +V
Sbjct: 121 HKKLRNKRLAPVLIKEITRRVNKQNIWQALYTGGSILPTPLTTCRYQHRPINWSKLHDVG 180
Query: 311 FSHLSRNMTMQRTMKLYRLPETPKTAGLRPMETKDIPVVHQLLTRYLKQFHLTPVMSQEE 370
FSHL N T + Y LP PK GLRPM KD+ V LL +Y ++F + + ++EE
Sbjct: 181 FSHLPPNQTKSSMVASYTLPNNPKLKGLRPMTGKDVSTVLSLLYKYQERFDIVQLFTEEE 240
Query: 371 VEHWFYPQE-----NIIDTFVVENANGEVTDFLSFYTLPSTIMNHPTHKSLKAAYSFYNV 425
+HW + N++ ++VVE+ NG +TD+ S+Y LP T++++ H L AY FY
Sbjct: 241 FKHWMLGHDENSDSNVVKSYVVEDENGIITDYFSYYLLPFTVLDNAQHDELGIAYLFYYA 300
Query: 426 -------HTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYL 478
+ + L +L++DAL+ +K G DVFN L +N FL+ KFG GDG L YYL
Sbjct: 301 SDSFEKPNYKKRLNELITDALITSKKFGVDVFNCLTCQDNTYFLKDCKFGSGDGFLNYYL 360
Query: 479 YNWKCPSMGA 488
+N++ M
Sbjct: 361 FNYRTFPMDG 370
>1VHS-A nrPDB
Length = 175
Score = 34.6 bits (78), Expect = 0.11, Method: Composition-based stats.
Identities = 32/149 (21%), Positives = 52/149 (34%), Gaps = 16/149 (10%)
Query: 338 LRPMETKDIPVVHQLLTRYLKQFHLTP---VMSQEEVEHWFYPQENIIDTFVVENANGEV 394
LR E +D+ V + + +T ++ E+ WF +V E+ NG V
Sbjct: 5 LRLAEHRDLEAVVAIYNSTIASRMVTADTEPVTPEDRMEWFSGHTESRPLYVAEDENGNV 64
Query: 395 TDFLSFYTLPSTIMNHPTHKSLKAAYSFYNVHTQTPLLD----LMSDALVLAKMKGFDVF 450
++SF T P + K A + L+ +AL +A G
Sbjct: 65 AAWISF----ETFYGRPAYN--KTAEVSIYIDEACRGKGVGSYLLQEALRIAPNLGIRSL 118
Query: 451 NALDLMENKTFLEKLKFGIGDGNLQYYLY 479
A NK LK G ++ L+
Sbjct: 119 MAFIFGHNK---PSLKLFEKHGFAEWGLF 144
>1Z5X-E nrPDB
Length = 310
Score = 33.1 bits (74), Expect = 0.31, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 11/105 (10%)
Query: 48 PANDTGAKKKKKKQKKKKEKGSETDSAQDQPVKMNSLPAERIQEIQKAIELFSV-GQGPA 106
P K+K+KK +K K+K + T S +K P Q + +L SV G P
Sbjct: 19 PEFQCAVKRKEKKAQKDKDKPNSTTSCSPDGIKQEIDP----QRLDTDSQLLSVNGVKPI 74
Query: 107 KTMEEASKRSYQFW---DTQPVPKLGEVVNTHGPVEPDKDNIRQE 148
+E ++ P P+ + + P +++N+ +E
Sbjct: 75 TPEQEELIHRLVYFQNEYEHPSPEDIKRIVNAAP---EEENVAEE 116
>2CJU-H nrPDB
Length = 121
Score = 32.3 bits (72), Expect = 0.51, Method: Composition-based stats.
Identities = 11/62 (17%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 190 FDYSPEFLLWALRPPGWLPQWHCGVRVVSSRKLVGFISAIPANIHIYDTEKKMV---EIN 246
F ++ ++ W +PPG +W +R ++ + +++ I + + E+N
Sbjct: 27 FTFTNYYMNWVRQPPGKALEWLVSIRNKANGYTTDYSASVKGRFTISRDNSQSILYLEMN 86
Query: 247 FL 248
L
Sbjct: 87 NL 88
>2FAU-A nrPDB
Length = 341
Score = 31.9 bits (71), Expect = 0.60, Method: Composition-based stats.
Identities = 21/109 (19%), Positives = 44/109 (40%), Gaps = 7/109 (6%)
Query: 305 KLIEVKFSHL-SRNMTMQRTMKLYRLPETPKTAG----LRP-METKD-IPVVHQLLTRYL 357
+LI+ + + + T T+ Y + + G +R + D P + + ++
Sbjct: 212 QLIKKEITGIGPSTTTETETIAKYEIMDGAPVKGESIPIRLFLAGYDPTPTMRDVNKKFS 271
Query: 358 KQFHLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPST 406
++ L V+ EE +F QE I+ E + T+F + P +
Sbjct: 272 VRYFLNLVLVDEEDRRYFKQQEIILWRKAPEKLRKQRTNFHQRFESPES 320
>6CV9-A nrPDB
Length = 842
Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats.
Identities = 29/148 (19%), Positives = 58/148 (39%), Gaps = 22/148 (14%)
Query: 18 QMMEGNGNGHEHCSDCENEEDNSYNRGGLSPANDTGAKKKKKKQKKKKEKGSETDSAQDQ 77
++++G G + D E + N + G+S +++ +K K + K S T S++D
Sbjct: 697 ELIQGQKQGFQE--DAEMNKRNEEKKFGISGSHEDLSKFSLDKNQLAHNKQSSTRSSEDY 754
Query: 78 PVKMNSLPAERIQEIQKAIELFSVGQGPAKTMEEASKRSYQFWDTQPVPKLGEVVNTHGP 137
+ S P + Q+I K + V Q +++ S G
Sbjct: 755 HLNSFSNPPRQYQKIMKRLIKRYVLQA---QIDKESDE-----------------VNEGE 794
Query: 138 VEPDKDNIRQEPYTLPQGFTWDALDLGD 165
++ K +I Y L + + + DL +
Sbjct: 795 LKEIKQDISSLRYELLEEKSQNTEDLAE 822
>1QB4-A nrPDB
Length = 883
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 215 RVVSSRKLVGFISAIPANIHIYDTEKKMVEINFLCVHKKLRSKRVAPVLIREITRRVHLE 274
+ V S L ++A P I KMVE+N C+ K+L +K +A ++ RR+ +
Sbjct: 124 KAVESLSLELVLTAHPTEITRRTLIHKMVEVN-ACL-KQLDNKDIADYEHNQLMRRL-RQ 180
Query: 275 GIFQAVYTAGV--VLPKPVGTCRY 296
I Q+ +T + + P PV ++
Sbjct: 181 LIAQSWHTDEIRKLRPSPVDEAKW 204
>2G1D-A nrPDB
Length = 98
Score = 30.4 bits (67), Expect = 1.8, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 342 ETKDIPVVHQLLTRYLKQFHLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVT------ 395
E +D P++ + +Y+ +F + S+EE++ E + V+ + N ++T
Sbjct: 7 EKRDNPILKRKEIKYVLKFDSSRTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIE 66
Query: 396 DFLSFYT-LPSTIMNHPTHKSLK 417
+ Y PS ++ P ++ ++
Sbjct: 67 GYTKIYADKPSAMLYEPDYELIR 89
>6C95-D nrPDB
Length = 129
Score = 30.0 bits (66), Expect = 2.3, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 4 ESETAVKPPAPPLPQMMEGNGNGHEHCSD-CENEEDNSYN-RGGLSPANDTGAKKKKKKQ 61
E+ET+ P P+ + E +D E +E S N +S D ++++K KQ
Sbjct: 20 ETETSGPERPPEKPRKHDSGAADLERVTDYAEEKEIQSSNLETAMSVIGDRRSREQKAKQ 79
Query: 62 KKKKEKGSETDSAQDQPVKMNSLPAER 88
+++KE T +D + M + R
Sbjct: 80 EREKELAKVTIKKEDLELIMTEMEISR 106
>1Z5X-U nrPDB
Length = 262
Score = 30.0 bits (66), Expect = 2.6, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 25/48 (52%)
Query: 50 NDTGAKKKKKKQKKKKEKGSETDSAQDQPVKMNSLPAERIQEIQKAIE 97
+D G K++ ++++++ K + + N +P ERI E + +E
Sbjct: 7 DDKGPKREAVQEERQRNKEKSENEVESTSNSQNDMPIERILEAELRVE 54
>4PF1-A nrPDB
Length = 626
Score = 29.6 bits (65), Expect = 2.9, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 328 RLPETPKTAGLRPMETKDIPVVHQLLTRYLKQFHLTPVMSQEEVEHWFYPQENIIDTFV 386
+PE PK G + M + DI RY + F + + ++V + P + TF+
Sbjct: 514 EVPENPKLGGYQQMLSADI-----FRGRYREDFAVAKPLVPDKVLEYRIPLPQVSHTFL 567
>2JES-A nrPDB
Length = 503
Score = 28.9 bits (63), Expect = 5.4, Method: Composition-based stats.
Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 12/94 (12%)
Query: 107 KTMEEASKRSYQFWDTQPVPKLGEV-------VNTHGPVEPDKDNIRQEPYTLPQGFTWD 159
+T++ S + ++W P + E + KDN R++ + +++
Sbjct: 132 ETVKNMSNKGIEYWH----PFVDEEGEFDYVIFPAEEMIVVYKDNTRRDILFALRYYSYK 187
Query: 160 ALDLGDRGVLKELYTLLNENYVEDDDNMFRFDYS 193
+ +G+ ELYT + Y E D +++ DYS
Sbjct: 188 GI-MGEETQKAELYTDTHVYYYEKIDGVYQMDYS 220
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.306 0.136 0.399
Lambda K H
0.267 0.0417 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,725,582
Number of Sequences: 36641
Number of extensions: 894057
Number of successful extensions: 3117
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 2859
Number of HSP's gapped (non-prelim): 164
length of query: 496
length of database: 10,336,785
effective HSP length: 101
effective length of query: 395
effective length of database: 6,636,044
effective search space: 2621237380
effective search space used: 2621237380
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.0 bits)
S2: 61 (28.1 bits)