BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P30086 (187 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 1BEH-A nrPDB 385 e-108 1A44-A nrPDB 358 e-100 6ENS-A nrPDB 336 3e-93 2IQX-A nrPDB 327 2e-90 1KN3-A nrPDB 327 2e-90 6GAW-Bb nrPDB 77 3e-15 3J9M-6 nrPDB 71 3e-13 1WKP-A nrPDB 69 1e-12 3AXY-A nrPDB 67 4e-12 1WKO-A nrPDB 63 6e-11 1WPX-B nrPDB 63 8e-11 1QOU-A nrPDB 60 5e-10 5MRC-1 nrPDB 50 5e-07 2R77-A nrPDB 49 1e-06 4BEG-A nrPDB 33 0.074 6FKM-A nrPDB 32 0.15 2XD4-A nrPDB 30 0.71 4Y23-A nrPDB 28 1.9 3PXX-A nrPDB 28 2.0 4LB0-A nrPDB 28 3.0 5UJ8-A nrPDB 28 3.1 3HJB-A nrPDB 27 3.9 4QLA-A nrPDB 27 4.2 4EZI-A nrPDB 27 5.5 1Q4R-A nrPDB 27 5.5 5O46-B nrPDB 27 5.5 1VPE-A nrPDB 26 8.0 4ZDJ-A nrPDB 26 8.3 >1BEH-A nrPDB Length = 187 Score = 385 bits (989), Expect = e-108, Method: Compositional matrix adjust. Identities = 187/187 (100%), Positives = 187/187 (100%) Query: 1 MPVDLSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDS 60 MPVDLSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDS Sbjct: 1 MPVDLSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDS 60 Query: 61 GKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRY 120 GKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRY Sbjct: 61 GKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRY 120 Query: 121 VWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPKL 180 VWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPKL Sbjct: 121 VWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPKL 180 Query: 181 YEQLSGK 187 YEQLSGK Sbjct: 181 YEQLSGK 187 >1A44-A nrPDB Length = 185 Score = 358 bits (920), Expect = e-100, Method: Compositional matrix adjust. Identities = 174/185 (94%), Positives = 178/185 (96%) Query: 2 PVDLSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDSG 61 PVDLSKWSGPLSLQEVDE+PQHPL V Y GA VDELGKVLTPTQVKNRPTSI+WDGLD G Sbjct: 1 PVDLSKWSGPLSLQEVDERPQHPLQVKYGGAEVDELGKVLTPTQVKNRPTSITWDGLDPG 60 Query: 62 KLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYV 121 KLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGN+ISSGTVLSDYVGSGPPKGTGLHRYV Sbjct: 61 KLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNNISSGTVLSDYVGSGPPKGTGLHRYV 120 Query: 122 WLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPKLY 181 WLVYEQ+ PLKCDEPILSNRSGDHRGKFKVASFRKKYEL APVAGTCYQAEWDDYVPKLY Sbjct: 121 WLVYEQEGPLKCDEPILSNRSGDHRGKFKVASFRKKYELGAPVAGTCYQAEWDDYVPKLY 180 Query: 182 EQLSG 186 EQLSG Sbjct: 181 EQLSG 185 >6ENS-A nrPDB Length = 193 Score = 336 bits (862), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 160/185 (86%), Positives = 170/185 (91%) Query: 3 VDLSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDSGK 62 D+S+W+GPL LQEVDE PQH L V YAG VDELGKVLTPTQV NRP+SISWDGLD GK Sbjct: 9 ADISQWAGPLCLQEVDEPPQHALRVDYAGVTVDELGKVLTPTQVMNRPSSISWDGLDPGK 68 Query: 63 LYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYVW 122 LYTLVLTDPDAPSRKDPK+REWHHFLVVNMKGNDISSGTVLSDYVGSGPP GTGLHRYVW Sbjct: 69 LYTLVLTDPDAPSRKDPKFREWHHFLVVNMKGNDISSGTVLSDYVGSGPPSGTGLHRYVW 128 Query: 123 LVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPKLYE 182 LVYEQ++PL CDEPILSN+SGD+RGKFKV +FRKKY L APVAGTCYQAEWDDYVPKLYE Sbjct: 129 LVYEQEQPLSCDEPILSNKSGDNRGKFKVETFRKKYNLGAPVAGTCYQAEWDDYVPKLYE 188 Query: 183 QLSGK 187 QLSGK Sbjct: 189 QLSGK 193 >2IQX-A nrPDB Length = 187 Score = 327 bits (838), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 155/187 (82%), Positives = 169/187 (90%) Query: 1 MPVDLSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDS 60 M D+S+W+GPLSLQEVDE PQH L V Y G VDELGKVLTPTQV NRP+SISWDGLD Sbjct: 1 MAADISQWAGPLSLQEVDEPPQHALRVDYGGVTVDELGKVLTPTQVMNRPSSISWDGLDP 60 Query: 61 GKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRY 120 GKLYTLVLTDPDAPSRKDPK+REWHHFLVVNMKGNDISSGTVLS+YVGSGPPK TGLHRY Sbjct: 61 GKLYTLVLTDPDAPSRKDPKFREWHHFLVVNMKGNDISSGTVLSEYVGSGPPKDTGLHRY 120 Query: 121 VWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPKL 180 VWLVYEQ++PL CDEPILSN+SGD+RGKFKV FRKKY L APVAGTC+QAEWDD VPKL Sbjct: 121 VWLVYEQEQPLNCDEPILSNKSGDNRGKFKVEEFRKKYHLGAPVAGTCFQAEWDDSVPKL 180 Query: 181 YEQLSGK 187 ++QL+GK Sbjct: 181 HDQLAGK 187 >1KN3-A nrPDB Length = 183 Score = 327 bits (837), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 155/183 (84%), Positives = 167/183 (91%) Query: 5 LSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDSGKLY 64 +S W+GPLSL EVDEQPQH L VTY A V+ELG+VLTPTQVK+RP SISWDGLD GKLY Sbjct: 1 MSMWTGPLSLHEVDEQPQHLLRVTYTEAEVEELGQVLTPTQVKHRPGSISWDGLDPGKLY 60 Query: 65 TLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYVWLV 124 TL+LTDPDAPSRK P YREWHHFLVVNMKGNDISSG VLSDYVGSGPPKGTGLHRYVWLV Sbjct: 61 TLILTDPDAPSRKKPVYREWHHFLVVNMKGNDISSGNVLSDYVGSGPPKGTGLHRYVWLV 120 Query: 125 YEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPKLYEQL 184 Y+QD+PL+CDEPIL+NRSGDHRGKFK A+FRKKY L APVAGTCYQAEWD YVPKLY+QL Sbjct: 121 YQQDKPLRCDEPILTNRSGDHRGKFKTAAFRKKYHLGAPVAGTCYQAEWDSYVPKLYKQL 180 Query: 185 SGK 187 SGK Sbjct: 181 SGK 183 >6GAW-Bb nrPDB Length = 380 Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 90/185 (48%), Gaps = 40/185 (21%) Query: 21 PQHPLHVTYAGAAVDEL----GKVLTPTQVKNRPTSISWDGLDSGKLYTLVLT------- 69 P+ PLHV YA D + G +TPT+ P ++++ D G L+TL+LT Sbjct: 169 PRVPLHVAYAVGEDDLMPVYHGNEVTPTEAAQAP-EVTYEA-DEGSLWTLLLTNLDGHLL 226 Query: 70 DPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQD- 128 +PDA E+ H+LV N+ GN ++ G Y+ P +G+G HR+ +L+++QD Sbjct: 227 EPDA---------EYVHWLVTNIPGNRVTEGQETCPYLPPFPARGSGFHRFAFLLFKQDK 277 Query: 129 --------RPLKCDEPILSNRSGDHRGKFKVASFRKKYE-LRAPVAGTCYQAEWDDYVPK 179 RP C + L+ R+ F F KK++ P +Q WDD V + Sbjct: 278 RIDFSGDTRPSPCYQ--LAQRT------FHTFDFYKKHQDAMTPAGLAFFQCRWDDSVTR 329 Query: 180 LYEQL 184 ++ QL Sbjct: 330 VFHQL 334 >3J9M-6 nrPDB Length = 380 Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 34/182 (18%) Query: 21 PQHPLHVTYAGAAVDEL----GKVLTPTQVKNRPTSISWDGLDSGKLYTLV------LTD 70 P+ PLHV YA D + G +TPT+ P ++++ + L+ L + Sbjct: 169 PRVPLHVAYAVGEDDLMPVYCGNEVTPTEAAQAP-EVTYEAEEGSLWTLLLTSLDGHLLE 227 Query: 71 PDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQDRP 130 PDA E+ H+L+ N+ GN ++ G V Y+ P +G+G+HR +L+++QD+P Sbjct: 228 PDA---------EYLHWLLTNIPGNRVAEGQVTCPYLPPFPARGSGIHRLAFLLFKQDQP 278 Query: 131 LKCDEPI-------LSNRSGDHRGKFKVASFRKKY-ELRAPVAGTCYQAEWDDYVPKLYE 182 + E L+ R+ F+ F KK+ E P + +Q WDD V ++ Sbjct: 279 IDFSEDARPSPCYQLAQRT------FRTFDFYKKHQETMTPAGLSFFQCRWDDSVTYIFH 332 Query: 183 QL 184 QL Sbjct: 333 QL 334 >1WKP-A nrPDB Length = 171 Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 70/150 (46%), Gaps = 14/150 (9%) Query: 25 LHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYREW 84 L VTY V G L P+QV+N+P + G D YTLV+ DPD PS +P RE+ Sbjct: 31 LKVTYGQREVTN-GLNLRPSQVQNKP-RVEIGGEDLRNFYTLVMVDPDVPSPSNPHLREY 88 Query: 85 HHFLVVNMKGNDISSGTVLSDYVGS--GPPKGTGLHRYVWLVYEQDRPLKCDEPILSNRS 142 H+LV ++ ++GT + + S P G+HR V++++ Q P Sbjct: 89 LHWLVTDIPA---TTGTTFGNEIVSYENPSPTAGIHRVVFILFRQLGRQTVYAP------ 139 Query: 143 GDHRGKFKVASFRKKYELRAPVAGTCYQAE 172 R F F + Y L PVA Y ++ Sbjct: 140 -GWRQNFNTREFAEIYNLGLPVAAVFYNSQ 168 >3AXY-A nrPDB Length = 170 Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 70/149 (46%), Gaps = 12/149 (8%) Query: 25 LHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYREW 84 L VTY V G L P+ V ++P + G D YTLV+ DPDAPS DP RE+ Sbjct: 30 LKVTYGSKTVSN-GLELKPSMVTHQP-RVEVGGNDMRTFYTLVMVDPDAPSPSDPNLREY 87 Query: 85 HHFLVVNMKGNDISS-GTVLSDYVGSGPPKGTGLHRYVWLVYEQDRPLKCDEPILSNRSG 143 H+LV ++ G +S G + Y P G+HR V+++++Q P Sbjct: 88 LHWLVTDIPGTTAASFGQEVMSY--ESPRPTMGIHRLVFVLFQQLGRQTVYAP------- 138 Query: 144 DHRGKFKVASFRKKYELRAPVAGTCYQAE 172 R F F + Y L +PVA + ++ Sbjct: 139 GWRQNFNTKDFAELYNLGSPVAAVYFNSQ 167 >1WKO-A nrPDB Length = 180 Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 74/156 (47%), Gaps = 13/156 (8%) Query: 21 PQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPK 80 P ++V+Y V G L P+ V ++P + G D +TLV+ DPD P DP Sbjct: 30 PTTKMNVSYNKKQVSN-GHELFPSSVSSKP-RVEIHGGDLRSFFTLVMIDPDVPGPSDPF 87 Query: 81 YREWHHFLVVNMKG-NDISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQDRPLKCDEPILS 139 +E H++V N+ G D + G + Y P G+HR+V++++ Q K I Sbjct: 88 LKEHLHWIVTNIPGTTDATFGKEVVSY--ELPRPSIGIHRFVFVLFRQ----KQRRVIFP 141 Query: 140 NR-SGDHRGKFKVASFRKKYELRAPVAGTCYQAEWD 174 N S DH F F +Y+L PVA + A+ + Sbjct: 142 NIPSRDH---FNTRKFAVEYDLGLPVAAVFFNAQRE 174 >1WPX-B nrPDB Length = 220 Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 32/148 (21%) Query: 14 LQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPT-SISWDGL-------------D 59 + + QP L V Y+ +A +G L + +++P +++ Sbjct: 26 IHDTSFQPSGILAVEYSSSAPVAMGNTLPTEKARSKPQFQFTFNKQMQKSVPQANAYVPQ 85 Query: 60 SGKLYTLVLTDPDAPSRKDPKYREWHHFL-----VVNMKGNDISSGT------------- 101 L+TLV+TDPDAPS+ D K+ E+ H + ++N ++ S T Sbjct: 86 DDDLFTLVMTDPDAPSKTDHKWSEFCHLVECDLKLLNEATHETSGATEFFASEFNTKGSN 145 Query: 102 VLSDYVGSGPPKGTGLHRYVWLVYEQDR 129 L +Y+G PPKG+G HRYV+L+Y+Q + Sbjct: 146 TLIEYMGPAPPKGSGPHRYVFLLYKQPK 173 >1QOU-A nrPDB Length = 181 Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 66/139 (47%), Gaps = 10/139 (7%) Query: 38 GKVLTPTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKG-ND 96 G L P+ V + P + G D +TL++TDPD P DP RE H++V ++ G D Sbjct: 45 GHELFPSAVTSTP-RVEVHGGDMRSFFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTD 103 Query: 97 ISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQ-DRPLKCDEPILSNRSGDHRGKFKVASFR 155 S G + Y P G+HR+V+L+++Q R P + R G F F Sbjct: 104 SSFGKEVVSY--EMPRPNIGIHRFVFLLFKQKKRGQAMLSPPVVCRDG-----FNTRKFT 156 Query: 156 KKYELRAPVAGTCYQAEWD 174 ++ EL PVA + + + Sbjct: 157 QENELGLPVAAVFFNCQRE 175 >5MRC-1 nrPDB Length = 348 Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 16/135 (11%) Query: 62 KLYTLVLTDPDAPSRKDPKYRE--WHHFLVVNMKGND-------ISSGTVLSDYVGSGPP 112 +LYT+++ +PD P + ++ + + +N+ ND S +++DY+ P Sbjct: 203 QLYTVLIVNPDVPDLSNDSFKTALCYGLVNINLTYNDNLIDPRKFHSSNIIADYLPPVPE 262 Query: 113 KGTGLHRYVWLVYEQDRPLKCDEP----ILSNRSGDHRGKFKVASFRKKYELRAPVAGTC 168 K G R+V V+ Q PL D+ + +R R F + F KKY L A + Sbjct: 263 KNAGKQRFVVWVFRQ--PLIEDKQGPNMLEIDRKELSRDDFDIRQFTKKYNLTA-IGAHI 319 Query: 169 YQAEWDDYVPKLYEQ 183 +++EWD V + E+ Sbjct: 320 WRSEWDAKVAAVREK 334 >2R77-A nrPDB Length = 205 Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 9/114 (7%) Query: 25 LHVTYAGAAVDELGKVLTPTQVKNRPTSISW-DGLDSGKLYTLVLTDPDAPSRKDPKYRE 83 L +++ G VL + P +I + + G + L + DPD PSR P +E Sbjct: 46 LFISFKAGKEVNHGNVLDIAGTGSVPRNIKFSEEPPDGYCFVLFMVDPDYPSRLRPDGKE 105 Query: 84 WHHFLVVNMKGNDISSGT-----VLSDYVGSGPPKGTGLHR---YVWLVYEQDR 129 + H++V +K ++ GT + YVG KGTGLHR + L+ E+D+ Sbjct: 106 YIHWVVSGIKTKELIKGTQKNCVTILPYVGPSIKKGTGLHRISFIISLIKEEDK 159 >4BEG-A nrPDB Length = 178 Score = 33.1 bits (74), Expect = 0.074, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 25/93 (26%) Query: 53 ISWDGLDS-GKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGN------------DISS 99 + W G S + + + + DPDAP+ + H+ V N+ N ++ Sbjct: 52 LRWSGFPSETRSFAVTVYDPDAPTLSG-----FWHWAVANLPANVTELPEGVGDGRELPG 106 Query: 100 G--TVLSD-----YVGSGPPKGTGLHRYVWLVY 125 G T+++D YVG+ PP G G+HRY V+ Sbjct: 107 GALTLVNDAGMRRYVGAAPPPGHGVHRYYVAVH 139 >6FKM-A nrPDB Length = 715 Score = 32.0 bits (71), Expect = 0.15, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 3/61 (4%) Query: 94 GNDISSGTVLSDYVGSGPPKGTGLH-RYVWLVYEQDRPLKCDEPILSNRSGDHRGKFKVA 152 ND +S TV ++ GPP+ + YV + Y + P + + P +++RS + F++A Sbjct: 157 ANDANSSTVA--FIAPGPPQHPVTNVMYVGVTYTNNSPYRSEIPAVASRSLEKTKMFQIA 214 Query: 153 S 153 S Sbjct: 215 S 215 >2XD4-A nrPDB Length = 422 Score = 29.6 bits (65), Expect = 0.71, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 8/64 (12%) Query: 44 TQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVL 103 Q K P I DGL +GK T+ +T+ +A + H FL + K D S+ V+ Sbjct: 133 VQEKGAPIVIKADGLAAGKGVTVAMTEEEAIAC-------LHDFL-EDEKFGDASASVVI 184 Query: 104 SDYV 107 +Y+ Sbjct: 185 EEYL 188 >4Y23-A nrPDB Length = 585 Score = 28.5 bits (62), Expect = 1.9, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 16/102 (15%) Query: 25 LHVTYAGAA--------VD-ELGKVLTPTQVKNRPTSISWDGLD----SGKLYTLVLTDP 71 +H++YA A VD L +L P +K R IS D ++ G + +P Sbjct: 324 MHLSYADRAAYAGDPEFVDVPLRGLLDPDYIKERQKLISLDSMNRDVKEGDPWKYEEGEP 383 Query: 72 D---APSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSG 110 + P +D E HF V + GN +S T + G+G Sbjct: 384 NYEIVPQPEDKTIGEATHFTVTDQWGNVVSYTTTIEQLFGTG 425 >3PXX-A nrPDB Length = 287 Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 7/58 (12%) Query: 28 TYAGAAVD----ELGKVLTPTQVKNR---PTSISWDGLDSGKLYTLVLTDPDAPSRKD 78 +YA VD +L L P ++ PT+++ D L+S +Y D +APSR D Sbjct: 179 SYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLNSAPMYRQFRPDLEAPSRAD 236 >4LB0-A nrPDB Length = 348 Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust. Identities = 13/26 (50%), Positives = 16/26 (61%) Query: 78 DPKYREWHHFLVVNMKGNDISSGTVL 103 DPK RE HFLV+ +G I S +L Sbjct: 45 DPKGRELRHFLVLEPRGAPIGSVNLL 70 >5UJ8-A nrPDB Length = 712 Score = 27.7 bits (60), Expect = 3.1, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 1/75 (1%) Query: 34 VDELGKVLTPTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYREWHH-FLVVNM 92 VD K V R T S D L S + TDP S+K +W +VV + Sbjct: 160 VDIKSKEEESVHVTQRKTHYSMDSLSSWYMTVTQKTDPKMLSKKRTTSSQWQSPPVVVIL 219 Query: 93 KGNDISSGTVLSDYV 107 K + + VL D++ Sbjct: 220 KDMESFATKVLQDFI 234 >3HJB-A nrPDB Length = 574 Score = 27.3 bits (59), Expect = 3.9, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%) Query: 110 GPPKGTGLHRYVWLVYEQDRPLKCD--EPILS-NRSGDHRGKFKVASFRKKYELRAPVAG 166 G P G H + L+++ + + CD P +S N GDH K F + L + Sbjct: 403 GEPGTNGQHAFYQLIHQGTKLIPCDFIAPAVSHNLVGDHHQKLMSNFFAQTEALAFGKSA 462 Query: 167 TCYQAE 172 QAE Sbjct: 463 QAVQAE 468 >4QLA-A nrPDB Length = 447 Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust. Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 5/59 (8%) Query: 1 MP-VDLSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGL 58 MP +DL +W GP L++ + P +T++ V EL + + K RP + +G+ Sbjct: 16 MPKLDLEEWWGPPELKQKQDTSIKPFEITFSETMVKELKERIK----KRRPFAPPLEGV 70 >4EZI-A nrPDB Length = 377 Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%) Query: 72 DAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYV 121 D PSR + K +++ + GN TV+ DY+G G + T LH YV Sbjct: 89 DVPSRNNEK-----NYIYLAAYGNSAGYMTVMPDYLGLGDNELT-LHPYV 132 >1Q4R-A nrPDB Length = 112 Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust. Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%) Query: 13 SLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSIS 54 S + V E HP HV +A + L KVL + +PTS+S Sbjct: 73 SKEAVAEYIAHPAHVEFATIFLGSLDKVLV---IDYKPTSVS 111 >5O46-B nrPDB Length = 120 Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust. Identities = 9/27 (33%), Positives = 17/27 (62%) Query: 78 DPKYREWHHFLVVNMKGNDISSGTVLS 104 DP+Y+EW HF + + N + T+++ Sbjct: 15 DPRYKEWAHFAISSQVENRTNFDTLMT 41 >1VPE-A nrPDB Length = 398 Score = 26.2 bits (56), Expect = 8.0, Method: Compositional matrix adjust. Identities = 11/33 (33%), Positives = 19/33 (57%) Query: 8 WSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKV 40 W+GP+ + E+D+ + V A AA+ E G + Sbjct: 315 WNGPMGVFEIDDFAEGTKQVALAIAALTEKGAI 347 >4ZDJ-A nrPDB Length = 587 Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust. Identities = 11/28 (39%), Positives = 15/28 (53%) Query: 23 HPLHVTYAGAAVDELGKVLTPTQVKNRP 50 HPL V + GAA+D L P ++ P Sbjct: 536 HPLFVAFVGAAIDYKAGELLPVEIPEIP 563 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 1BEH-A nrPDB 297 2e-81 6ENS-A nrPDB 292 7e-80 1A44-A nrPDB 291 1e-79 2IQX-A nrPDB 289 4e-79 1KN3-A nrPDB 283 2e-77 1WKP-A nrPDB 176 5e-45 3AXY-A nrPDB 172 9e-44 1WKO-A nrPDB 170 3e-43 6GAW-Bb nrPDB 168 1e-42 1QOU-A nrPDB 167 3e-42 3J9M-6 nrPDB 158 1e-39 5MRC-1 nrPDB 129 8e-31 2R77-A nrPDB 126 4e-30 1WPX-B nrPDB 126 4e-30 Sequences not found previously or not previously below threshold: 6HIV-Ab nrPDB 44 6e-05 1FUX-A nrPDB 42 2e-04 4BEG-A nrPDB 40 7e-04 3EYB-A nrPDB 31 0.46 2GL8-A nrPDB 29 0.91 5KYA-B nrPDB 29 1.5 1H9U-A nrPDB 29 1.5 6HN6-A nrPDB 27 3.9 5EC9-A nrPDB 27 3.9 4OC7-A nrPDB 27 3.9 4NQA-A nrPDB 27 3.9 3DZU-A nrPDB 27 4.2 >1BEH-A nrPDB Length = 187 Score = 297 bits (760), Expect = 2e-81, Method: Composition-based stats. Identities = 187/187 (100%), Positives = 187/187 (100%) Query: 1 MPVDLSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDS 60 MPVDLSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDS Sbjct: 1 MPVDLSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDS 60 Query: 61 GKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRY 120 GKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRY Sbjct: 61 GKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRY 120 Query: 121 VWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPKL 180 VWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPKL Sbjct: 121 VWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPKL 180 Query: 181 YEQLSGK 187 YEQLSGK Sbjct: 181 YEQLSGK 187 >6ENS-A nrPDB Length = 193 Score = 292 bits (747), Expect = 7e-80, Method: Composition-based stats. Identities = 160/186 (86%), Positives = 170/186 (91%) Query: 2 PVDLSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDSG 61 D+S+W+GPL LQEVDE PQH L V YAG VDELGKVLTPTQV NRP+SISWDGLD G Sbjct: 8 AADISQWAGPLCLQEVDEPPQHALRVDYAGVTVDELGKVLTPTQVMNRPSSISWDGLDPG 67 Query: 62 KLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYV 121 KLYTLVLTDPDAPSRKDPK+REWHHFLVVNMKGNDISSGTVLSDYVGSGPP GTGLHRYV Sbjct: 68 KLYTLVLTDPDAPSRKDPKFREWHHFLVVNMKGNDISSGTVLSDYVGSGPPSGTGLHRYV 127 Query: 122 WLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPKLY 181 WLVYEQ++PL CDEPILSN+SGD+RGKFKV +FRKKY L APVAGTCYQAEWDDYVPKLY Sbjct: 128 WLVYEQEQPLSCDEPILSNKSGDNRGKFKVETFRKKYNLGAPVAGTCYQAEWDDYVPKLY 187 Query: 182 EQLSGK 187 EQLSGK Sbjct: 188 EQLSGK 193 >1A44-A nrPDB Length = 185 Score = 291 bits (745), Expect = 1e-79, Method: Composition-based stats. Identities = 174/185 (94%), Positives = 178/185 (96%) Query: 2 PVDLSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDSG 61 PVDLSKWSGPLSLQEVDE+PQHPL V Y GA VDELGKVLTPTQVKNRPTSI+WDGLD G Sbjct: 1 PVDLSKWSGPLSLQEVDERPQHPLQVKYGGAEVDELGKVLTPTQVKNRPTSITWDGLDPG 60 Query: 62 KLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYV 121 KLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGN+ISSGTVLSDYVGSGPPKGTGLHRYV Sbjct: 61 KLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNNISSGTVLSDYVGSGPPKGTGLHRYV 120 Query: 122 WLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPKLY 181 WLVYEQ+ PLKCDEPILSNRSGDHRGKFKVASFRKKYEL APVAGTCYQAEWDDYVPKLY Sbjct: 121 WLVYEQEGPLKCDEPILSNRSGDHRGKFKVASFRKKYELGAPVAGTCYQAEWDDYVPKLY 180 Query: 182 EQLSG 186 EQLSG Sbjct: 181 EQLSG 185 >2IQX-A nrPDB Length = 187 Score = 289 bits (740), Expect = 4e-79, Method: Composition-based stats. Identities = 155/187 (82%), Positives = 169/187 (90%) Query: 1 MPVDLSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDS 60 M D+S+W+GPLSLQEVDE PQH L V Y G VDELGKVLTPTQV NRP+SISWDGLD Sbjct: 1 MAADISQWAGPLSLQEVDEPPQHALRVDYGGVTVDELGKVLTPTQVMNRPSSISWDGLDP 60 Query: 61 GKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRY 120 GKLYTLVLTDPDAPSRKDPK+REWHHFLVVNMKGNDISSGTVLS+YVGSGPPK TGLHRY Sbjct: 61 GKLYTLVLTDPDAPSRKDPKFREWHHFLVVNMKGNDISSGTVLSEYVGSGPPKDTGLHRY 120 Query: 121 VWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPKL 180 VWLVYEQ++PL CDEPILSN+SGD+RGKFKV FRKKY L APVAGTC+QAEWDD VPKL Sbjct: 121 VWLVYEQEQPLNCDEPILSNKSGDNRGKFKVEEFRKKYHLGAPVAGTCFQAEWDDSVPKL 180 Query: 181 YEQLSGK 187 ++QL+GK Sbjct: 181 HDQLAGK 187 >1KN3-A nrPDB Length = 183 Score = 283 bits (725), Expect = 2e-77, Method: Composition-based stats. Identities = 155/183 (84%), Positives = 167/183 (91%) Query: 5 LSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDSGKLY 64 +S W+GPLSL EVDEQPQH L VTY A V+ELG+VLTPTQVK+RP SISWDGLD GKLY Sbjct: 1 MSMWTGPLSLHEVDEQPQHLLRVTYTEAEVEELGQVLTPTQVKHRPGSISWDGLDPGKLY 60 Query: 65 TLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYVWLV 124 TL+LTDPDAPSRK P YREWHHFLVVNMKGNDISSG VLSDYVGSGPPKGTGLHRYVWLV Sbjct: 61 TLILTDPDAPSRKKPVYREWHHFLVVNMKGNDISSGNVLSDYVGSGPPKGTGLHRYVWLV 120 Query: 125 YEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPKLYEQL 184 Y+QD+PL+CDEPIL+NRSGDHRGKFK A+FRKKY L APVAGTCYQAEWD YVPKLY+QL Sbjct: 121 YQQDKPLRCDEPILTNRSGDHRGKFKTAAFRKKYHLGAPVAGTCYQAEWDSYVPKLYKQL 180 Query: 185 SGK 187 SGK Sbjct: 181 SGK 183 >1WKP-A nrPDB Length = 171 Score = 176 bits (446), Expect = 5e-45, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 68/158 (43%), Gaps = 12/158 (7%) Query: 19 EQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKD 78 L VTY V G L P+QV+N+P + G D YTLV+ DPD PS + Sbjct: 25 FNRSITLKVTYGQREVTN-GLNLRPSQVQNKP-RVEIGGEDLRNFYTLVMVDPDVPSPSN 82 Query: 79 PKYREWHHFLVVNMKGND-ISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQDRPLKCDEPI 137 P RE+ H+LV ++ + G + Y P G+HR V++++ Q P Sbjct: 83 PHLREYLHWLVTDIPATTGTTFGNEIVSY--ENPSPTAGIHRVVFILFRQLGRQTVYAP- 139 Query: 138 LSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDD 175 R F F + Y L PVA Y ++ + Sbjct: 140 ------GWRQNFNTREFAEIYNLGLPVAAVFYNSQRES 171 >3AXY-A nrPDB Length = 170 Score = 172 bits (435), Expect = 9e-44, Method: Composition-based stats. Identities = 48/155 (30%), Positives = 71/155 (45%), Gaps = 12/155 (7%) Query: 22 QHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKY 81 L VTY V G L P+ V ++P + G D YTLV+ DPDAPS DP Sbjct: 27 STNLKVTYGSKTVSN-GLELKPSMVTHQP-RVEVGGNDMRTFYTLVMVDPDAPSPSDPNL 84 Query: 82 REWHHFLVVNMKGNDISS-GTVLSDYVGSGPPKGTGLHRYVWLVYEQDRPLKCDEPILSN 140 RE+ H+LV ++ G +S G + Y P G+HR V+++++Q P Sbjct: 85 REYLHWLVTDIPGTTAASFGQEVMSY--ESPRPTMGIHRLVFVLFQQLGRQTVYAP---- 138 Query: 141 RSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDD 175 R F F + Y L +PVA + ++ + Sbjct: 139 ---GWRQNFNTKDFAELYNLGSPVAAVYFNSQREA 170 >1WKO-A nrPDB Length = 180 Score = 170 bits (431), Expect = 3e-43, Method: Composition-based stats. Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 11/162 (6%) Query: 19 EQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKD 78 P ++V+Y V G L P+ V ++P + G D +TLV+ DPD P D Sbjct: 28 FTPTTKMNVSYNKKQVSN-GHELFPSSVSSKP-RVEIHGGDLRSFFTLVMIDPDVPGPSD 85 Query: 79 PKYREWHHFLVVNMKG-NDISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQDRPLKCDEPI 137 P +E H++V N+ G D + G + Y P G+HR+V++++ Q + I Sbjct: 86 PFLKEHLHWIVTNIPGTTDATFGKEVVSY--ELPRPSIGIHRFVFVLFRQKQR----RVI 139 Query: 138 LSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPK 179 N R F F +Y+L PVA + A+ + K Sbjct: 140 FPNIP--SRDHFNTRKFAVEYDLGLPVAAVFFNAQRETAARK 179 >6GAW-Bb nrPDB Length = 380 Score = 168 bits (425), Expect = 1e-42, Method: Composition-based stats. Identities = 51/177 (28%), Positives = 86/177 (48%), Gaps = 10/177 (5%) Query: 14 LQEVDEQPQHPLHVTYAGAAVDEL----GKVLTPTQVKNRPTSISWDGLDSGKLYTLVLT 69 P+ PLHV YA D + G +TPT+ P ++++ D G L+TL+LT Sbjct: 162 FHGATFVPRVPLHVAYAVGEDDLMPVYHGNEVTPTEAAQAP-EVTYEA-DEGSLWTLLLT 219 Query: 70 DPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQDR 129 + D +P E+ H+LV N+ GN ++ G Y+ P +G+G HR+ +L+++QD+ Sbjct: 220 NLDG-HLLEPD-AEYVHWLVTNIPGNRVTEGQETCPYLPPFPARGSGFHRFAFLLFKQDK 277 Query: 130 PLKCDEPILSNRS-GDHRGKFKVASFRKKY-ELRAPVAGTCYQAEWDDYVPKLYEQL 184 + + + F F KK+ + P +Q WDD V +++ QL Sbjct: 278 RIDFSGDTRPSPCYQLAQRTFHTFDFYKKHQDAMTPAGLAFFQCRWDDSVTRVFHQL 334 >1QOU-A nrPDB Length = 181 Score = 167 bits (422), Expect = 3e-42, Method: Composition-based stats. Identities = 50/185 (27%), Positives = 78/185 (42%), Gaps = 21/185 (11%) Query: 1 MPVDLSKWSGPLSLQEV------DEQPQHPLHVTYAGAAVDEL---GKVLTPTQVKNRPT 51 M +S S PL + V + V Y + G L P+ V + P Sbjct: 1 MAAKVS--SDPLVIGRVIGDVVDHFTSTVKMSVIYNSNNSIKHVYNGHELFPSAVTSTP- 57 Query: 52 SISWDGLDSGKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKG-NDISSGTVLSDYVGSG 110 + G D +TL++TDPD P DP RE H++V ++ G D S G + Y Sbjct: 58 RVEVHGGDMRSFFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSSFGKEVVSY--EM 115 Query: 111 PPKGTGLHRYVWLVYEQDRP-LKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCY 169 P G+HR+V+L+++Q + P + R G F F ++ EL PVA + Sbjct: 116 PRPNIGIHRFVFLLFKQKKRGQAMLSPPVVCRDG-----FNTRKFTQENELGLPVAAVFF 170 Query: 170 QAEWD 174 + + Sbjct: 171 NCQRE 175 >3J9M-6 nrPDB Length = 380 Score = 158 bits (400), Expect = 1e-39, Method: Composition-based stats. Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 22/183 (12%) Query: 14 LQEVDEQPQHPLHVTYAGAAVDEL----GKVLTPTQVKNRPTSISWDGLDSGKLYTLV-- 67 P+ PLHV YA D + G +TPT+ P ++++ + L+ Sbjct: 162 FHGATFVPRVPLHVAYAVGEDDLMPVYCGNEVTPTEAAQAP-EVTYEAEEGSLWTLLLTS 220 Query: 68 ----LTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYVWL 123 L +PDA E+ H+L+ N+ GN ++ G V Y+ P +G+G+HR +L Sbjct: 221 LDGHLLEPDA---------EYLHWLLTNIPGNRVAEGQVTCPYLPPFPARGSGIHRLAFL 271 Query: 124 VYEQDRPLKCDEPILSNRS-GDHRGKFKVASFRKKY-ELRAPVAGTCYQAEWDDYVPKLY 181 +++QD+P+ E + + F+ F KK+ E P + +Q WDD V ++ Sbjct: 272 LFKQDQPIDFSEDARPSPCYQLAQRTFRTFDFYKKHQETMTPAGLSFFQCRWDDSVTYIF 331 Query: 182 EQL 184 QL Sbjct: 332 HQL 334 >5MRC-1 nrPDB Length = 348 Score = 129 bits (323), Expect = 8e-31, Method: Composition-based stats. Identities = 42/184 (22%), Positives = 78/184 (42%), Gaps = 25/184 (13%) Query: 21 PQHPLHVTY----AGAAVDELGKVLTPTQVKNRPTSISWDGLD----SGKLYTLVLTDPD 72 P+ +++ + E G+ L+ RP + +LYT+++ +PD Sbjct: 155 PRAEVNIKFPFSTGVNKWIEPGEFLSSNVTSMRPI-FKIQEYELVNVEKQLYTVLIVNPD 213 Query: 73 APSRKDPKYRE--WHHFLVVNMKGND-------ISSGTVLSDYVGSGPPKGTGLHRYVWL 123 P + ++ + + +N+ ND S +++DY+ P K G R+V Sbjct: 214 VPDLSNDSFKTALCYGLVNINLTYNDNLIDPRKFHSSNIIADYLPPVPEKNAGKQRFVVW 273 Query: 124 VYEQDRPLKCDEP----ILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPK 179 V+ Q PL D+ + +R R F + F KKY L A + +++EWD V Sbjct: 274 VFRQ--PLIEDKQGPNMLEIDRKELSRDDFDIRQFTKKYNLTA-IGAHIWRSEWDAKVAA 330 Query: 180 LYEQ 183 + E+ Sbjct: 331 VREK 334 >2R77-A nrPDB Length = 205 Score = 126 bits (317), Expect = 4e-30, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 59/138 (42%), Gaps = 9/138 (6%) Query: 25 LHVTYAGAAVDELGKVLTPTQVKNRPTSISW-DGLDSGKLYTLVLTDPDAPSRKDPKYRE 83 L +++ G VL + P +I + + G + L + DPD PSR P +E Sbjct: 46 LFISFKAGKEVNHGNVLDIAGTGSVPRNIKFSEEPPDGYCFVLFMVDPDYPSRLRPDGKE 105 Query: 84 WHHFLVVNMKGNDISSGT-----VLSDYVGSGPPKGTGLHRYVW---LVYEQDRPLKCDE 135 + H++V +K ++ GT + YVG KGTGLHR + L+ E+D+ Sbjct: 106 YIHWVVSGIKTKELIKGTQKNCVTILPYVGPSIKKGTGLHRISFIISLIKEEDKDNITGL 165 Query: 136 PILSNRSGDHRGKFKVAS 153 P R KF Sbjct: 166 PHYKGEKYITRVKFNNYE 183 >1WPX-B nrPDB Length = 220 Score = 126 bits (317), Expect = 4e-30, Method: Composition-based stats. Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 36/194 (18%) Query: 14 LQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPT-SISWDG-------------LD 59 + + QP L V Y+ +A +G L + +++P +++ Sbjct: 26 IHDTSFQPSGILAVEYSSSAPVAMGNTLPTEKARSKPQFQFTFNKQMQKSVPQANAYVPQ 85 Query: 60 SGKLYTLVLTDPDAPSRKDPKYREWHHFL-----VVNMKGNDISSGT------------- 101 L+TLV+TDPDAPS+ D K+ E+ H + ++N ++ S T Sbjct: 86 DDDLFTLVMTDPDAPSKTDHKWSEFCHLVECDLKLLNEATHETSGATEFFASEFNTKGSN 145 Query: 102 VLSDYVGSGPPKGTGLHRYVWLVYEQDRPLKCDEPILSNRSGDH---RGKFKVASFRKKY 158 L +Y+G PPKG+G HRYV+L+Y+Q + + + + V + K+ Sbjct: 146 TLIEYMGPAPPKGSGPHRYVFLLYKQPKGVDSSKFSKIKDRPNWGYGTPATGVGKWAKEN 205 Query: 159 ELRAPVAGTCYQAE 172 L+ VA + AE Sbjct: 206 NLQL-VASNFFYAE 218 >6HIV-Ab nrPDB Length = 507 Score = 43.6 bits (101), Expect = 6e-05, Method: Composition-based stats. Identities = 34/205 (16%), Positives = 62/205 (30%), Gaps = 68/205 (33%) Query: 41 LTPTQVKNRPTSISWDGLDSGK---LYTLVLTDPDAP----------------------- 74 L + ++ D + G YTL++ PD P Sbjct: 224 LDTVSATGQGKAVEKDATEEGSDEVWYTLIIASPDYPFRVPASVDASTQRGFFLNYMMSN 283 Query: 75 ----------------SRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLH 118 R++ + R+ LV N G V+ Y P + G Sbjct: 284 LKGGGNSTVLEEYESEQRQNNQKRQHLEELVRN-PAPIAKEGDVIVSYTPPLPTEDAGTT 342 Query: 119 RYVWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKY------------ELRA---- 162 R++ ++++Q + S D + F + + + E+ + Sbjct: 343 RHICMLFKQ----RSYVSGASCALDDSKASFAARANFRLHAQHRDGIPSSSVEMLSRIEQ 398 Query: 163 -----PVAGTCYQAEWDDYVPKLYE 182 P A T +Q +WD V + YE Sbjct: 399 VLPPDPSAVTFFQTKWDIQVQEFYE 423 >1FUX-A nrPDB Length = 166 Score = 42.1 bits (97), Expect = 2e-04, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 62/164 (37%), Gaps = 38/164 (23%) Query: 32 AAVDELGKVLTPTQV--------KNRPTSISWDGLDSG-KLYTLVLTDPDAPSRKDPKYR 82 + + G+ LT + V N S++W G+ G K + + + DPDAP+ Sbjct: 7 SNEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGVPEGTKSFAVTVYDPDAPTGSG---- 62 Query: 83 EWHHFLVVNMK--------------GNDISSGTV-------LSDYVGSGPPKGTGLHRY- 120 W H+ VVN+ G + +G V + + G+ PPKG H Y Sbjct: 63 -WWHWTVVNIPATVTYLPVDAGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQ 121 Query: 121 --VWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRA 162 VW + + P+ + + K A YE++ Sbjct: 122 FKVWALKTEKIPVDSNSSGALVGYMLNANKIATAEITPVYEIKL 165 >4BEG-A nrPDB Length = 178 Score = 39.8 bits (91), Expect = 7e-04, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 25/97 (25%) Query: 44 TQVKNRPTSISWDG-LDSGKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGN------- 95 + + W G + + + + DPDAP+ + H+ V N+ N Sbjct: 43 AGGADASPQLRWSGFPSETRSFAVTVYDPDAPTLSG-----FWHWAVANLPANVTELPEG 97 Query: 96 -----DISSGTVLS-------DYVGSGPPKGTGLHRY 120 ++ G + YVG+ PP G G+HRY Sbjct: 98 VGDGRELPGGALTLVNDAGMRRYVGAAPPPGHGVHRY 134 >3EYB-A nrPDB Length = 219 Score = 30.5 bits (67), Expect = 0.46, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%) Query: 25 LHVTYAGAAVDELGKVLT--PTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYR 82 LHV + A +G + T++ + + D + G L +VL +PDA DP Sbjct: 94 LHVHRSSAHQAGVGTIFDRVLTELVAKMRDMKMDKTELGCLRAIVLFNPDAKGLTDPSLV 153 Query: 83 EWH 85 E Sbjct: 154 ESL 156 >2GL8-A nrPDB Length = 241 Score = 29.4 bits (64), Expect = 0.91, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 25 LHVTYAGAAVDELGKVLT--PTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYR 82 LHV + A +G + T++ ++ + D + G L +VL +PDA +P Sbjct: 109 LHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEV 168 Query: 83 EWH 85 E Sbjct: 169 ETL 171 >5KYA-B nrPDB Length = 256 Score = 28.6 bits (62), Expect = 1.5, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%) Query: 25 LHVTYAGAAVDELGKVLT--PTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYR 82 LHV A +G + T++ ++ + D + G L ++L +PDA +P Sbjct: 110 LHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEV 169 Query: 83 EWH 85 E Sbjct: 170 EVL 172 >1H9U-A nrPDB Length = 224 Score = 28.6 bits (62), Expect = 1.5, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%) Query: 25 LHVTYAGAAVDELGKVLT--PTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYR 82 LHV A +G + T++ ++ + D + G L ++L +PDA +P Sbjct: 103 LHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEV 162 Query: 83 EWH 85 E Sbjct: 163 EVL 165 >6HN6-A nrPDB Length = 282 Score = 27.4 bits (59), Expect = 3.9, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%) Query: 25 LHVTYAGAAVDELGKVLT--PTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYR 82 LHV A +G + T++ ++ + D + G L +VL +PD+ +P Sbjct: 150 LHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEV 209 Query: 83 EWH 85 E Sbjct: 210 EAL 212 >5EC9-A nrPDB Length = 210 Score = 27.4 bits (59), Expect = 3.9, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%) Query: 25 LHVTYAGAAVDELGKVLT--PTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYR 82 LHV A +G + T++ ++ + D + G L +VL +PD+ +P Sbjct: 84 LHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEV 143 Query: 83 EWH 85 E Sbjct: 144 EAL 146 >4OC7-A nrPDB Length = 254 Score = 27.4 bits (59), Expect = 3.9, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%) Query: 25 LHVTYAGAAVDELGKVLT--PTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYR 82 LHV A +G + T++ ++ + D + G L +VL +PD+ +P Sbjct: 122 LHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEV 181 Query: 83 EWH 85 E Sbjct: 182 EAL 184 >4NQA-A nrPDB Length = 365 Score = 27.4 bits (59), Expect = 3.9, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%) Query: 25 LHVTYAGAAVDELGKVLT--PTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYR 82 LHV A +G + T++ ++ + D + G L +VL +PD+ +P Sbjct: 233 LHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEV 292 Query: 83 EWH 85 E Sbjct: 293 EAL 295 >3DZU-A nrPDB Length = 467 Score = 27.4 bits (59), Expect = 4.2, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%) Query: 25 LHVTYAGAAVDELGKVLT--PTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYR 82 LHV A +G + T++ ++ + D + G L +VL +PD+ +P Sbjct: 335 LHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEV 394 Query: 83 EWH 85 E Sbjct: 395 EAL 397 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.304 0.125 0.335 Lambda K H 0.267 0.0386 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 7,599,151 Number of Sequences: 36641 Number of extensions: 291774 Number of successful extensions: 573 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 486 Number of HSP's gapped (non-prelim): 61 length of query: 187 length of database: 10,336,785 effective HSP length: 91 effective length of query: 96 effective length of database: 7,002,454 effective search space: 672235584 effective search space used: 672235584 T: 11 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.4 bits) S2: 56 (26.3 bits)