BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= P30086
(187 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
1BEH-A nrPDB 385 e-108
1A44-A nrPDB 358 e-100
6ENS-A nrPDB 336 3e-93
2IQX-A nrPDB 327 2e-90
1KN3-A nrPDB 327 2e-90
6GAW-Bb nrPDB 77 3e-15
3J9M-6 nrPDB 71 3e-13
1WKP-A nrPDB 69 1e-12
3AXY-A nrPDB 67 4e-12
1WKO-A nrPDB 63 6e-11
1WPX-B nrPDB 63 8e-11
1QOU-A nrPDB 60 5e-10
5MRC-1 nrPDB 50 5e-07
2R77-A nrPDB 49 1e-06
4BEG-A nrPDB 33 0.074
6FKM-A nrPDB 32 0.15
2XD4-A nrPDB 30 0.71
4Y23-A nrPDB 28 1.9
3PXX-A nrPDB 28 2.0
4LB0-A nrPDB 28 3.0
5UJ8-A nrPDB 28 3.1
3HJB-A nrPDB 27 3.9
4QLA-A nrPDB 27 4.2
4EZI-A nrPDB 27 5.5
1Q4R-A nrPDB 27 5.5
5O46-B nrPDB 27 5.5
1VPE-A nrPDB 26 8.0
4ZDJ-A nrPDB 26 8.3
>1BEH-A nrPDB
Length = 187
Score = 385 bits (989), Expect = e-108, Method: Compositional matrix adjust.
Identities = 187/187 (100%), Positives = 187/187 (100%)
Query: 1 MPVDLSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDS 60
MPVDLSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDS
Sbjct: 1 MPVDLSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDS 60
Query: 61 GKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRY 120
GKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRY
Sbjct: 61 GKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRY 120
Query: 121 VWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPKL 180
VWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPKL
Sbjct: 121 VWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPKL 180
Query: 181 YEQLSGK 187
YEQLSGK
Sbjct: 181 YEQLSGK 187
>1A44-A nrPDB
Length = 185
Score = 358 bits (920), Expect = e-100, Method: Compositional matrix adjust.
Identities = 174/185 (94%), Positives = 178/185 (96%)
Query: 2 PVDLSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDSG 61
PVDLSKWSGPLSLQEVDE+PQHPL V Y GA VDELGKVLTPTQVKNRPTSI+WDGLD G
Sbjct: 1 PVDLSKWSGPLSLQEVDERPQHPLQVKYGGAEVDELGKVLTPTQVKNRPTSITWDGLDPG 60
Query: 62 KLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYV 121
KLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGN+ISSGTVLSDYVGSGPPKGTGLHRYV
Sbjct: 61 KLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNNISSGTVLSDYVGSGPPKGTGLHRYV 120
Query: 122 WLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPKLY 181
WLVYEQ+ PLKCDEPILSNRSGDHRGKFKVASFRKKYEL APVAGTCYQAEWDDYVPKLY
Sbjct: 121 WLVYEQEGPLKCDEPILSNRSGDHRGKFKVASFRKKYELGAPVAGTCYQAEWDDYVPKLY 180
Query: 182 EQLSG 186
EQLSG
Sbjct: 181 EQLSG 185
>6ENS-A nrPDB
Length = 193
Score = 336 bits (862), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 160/185 (86%), Positives = 170/185 (91%)
Query: 3 VDLSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDSGK 62
D+S+W+GPL LQEVDE PQH L V YAG VDELGKVLTPTQV NRP+SISWDGLD GK
Sbjct: 9 ADISQWAGPLCLQEVDEPPQHALRVDYAGVTVDELGKVLTPTQVMNRPSSISWDGLDPGK 68
Query: 63 LYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYVW 122
LYTLVLTDPDAPSRKDPK+REWHHFLVVNMKGNDISSGTVLSDYVGSGPP GTGLHRYVW
Sbjct: 69 LYTLVLTDPDAPSRKDPKFREWHHFLVVNMKGNDISSGTVLSDYVGSGPPSGTGLHRYVW 128
Query: 123 LVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPKLYE 182
LVYEQ++PL CDEPILSN+SGD+RGKFKV +FRKKY L APVAGTCYQAEWDDYVPKLYE
Sbjct: 129 LVYEQEQPLSCDEPILSNKSGDNRGKFKVETFRKKYNLGAPVAGTCYQAEWDDYVPKLYE 188
Query: 183 QLSGK 187
QLSGK
Sbjct: 189 QLSGK 193
>2IQX-A nrPDB
Length = 187
Score = 327 bits (838), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 155/187 (82%), Positives = 169/187 (90%)
Query: 1 MPVDLSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDS 60
M D+S+W+GPLSLQEVDE PQH L V Y G VDELGKVLTPTQV NRP+SISWDGLD
Sbjct: 1 MAADISQWAGPLSLQEVDEPPQHALRVDYGGVTVDELGKVLTPTQVMNRPSSISWDGLDP 60
Query: 61 GKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRY 120
GKLYTLVLTDPDAPSRKDPK+REWHHFLVVNMKGNDISSGTVLS+YVGSGPPK TGLHRY
Sbjct: 61 GKLYTLVLTDPDAPSRKDPKFREWHHFLVVNMKGNDISSGTVLSEYVGSGPPKDTGLHRY 120
Query: 121 VWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPKL 180
VWLVYEQ++PL CDEPILSN+SGD+RGKFKV FRKKY L APVAGTC+QAEWDD VPKL
Sbjct: 121 VWLVYEQEQPLNCDEPILSNKSGDNRGKFKVEEFRKKYHLGAPVAGTCFQAEWDDSVPKL 180
Query: 181 YEQLSGK 187
++QL+GK
Sbjct: 181 HDQLAGK 187
>1KN3-A nrPDB
Length = 183
Score = 327 bits (837), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 155/183 (84%), Positives = 167/183 (91%)
Query: 5 LSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDSGKLY 64
+S W+GPLSL EVDEQPQH L VTY A V+ELG+VLTPTQVK+RP SISWDGLD GKLY
Sbjct: 1 MSMWTGPLSLHEVDEQPQHLLRVTYTEAEVEELGQVLTPTQVKHRPGSISWDGLDPGKLY 60
Query: 65 TLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYVWLV 124
TL+LTDPDAPSRK P YREWHHFLVVNMKGNDISSG VLSDYVGSGPPKGTGLHRYVWLV
Sbjct: 61 TLILTDPDAPSRKKPVYREWHHFLVVNMKGNDISSGNVLSDYVGSGPPKGTGLHRYVWLV 120
Query: 125 YEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPKLYEQL 184
Y+QD+PL+CDEPIL+NRSGDHRGKFK A+FRKKY L APVAGTCYQAEWD YVPKLY+QL
Sbjct: 121 YQQDKPLRCDEPILTNRSGDHRGKFKTAAFRKKYHLGAPVAGTCYQAEWDSYVPKLYKQL 180
Query: 185 SGK 187
SGK
Sbjct: 181 SGK 183
>6GAW-Bb nrPDB
Length = 380
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 90/185 (48%), Gaps = 40/185 (21%)
Query: 21 PQHPLHVTYAGAAVDEL----GKVLTPTQVKNRPTSISWDGLDSGKLYTLVLT------- 69
P+ PLHV YA D + G +TPT+ P ++++ D G L+TL+LT
Sbjct: 169 PRVPLHVAYAVGEDDLMPVYHGNEVTPTEAAQAP-EVTYEA-DEGSLWTLLLTNLDGHLL 226
Query: 70 DPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQD- 128
+PDA E+ H+LV N+ GN ++ G Y+ P +G+G HR+ +L+++QD
Sbjct: 227 EPDA---------EYVHWLVTNIPGNRVTEGQETCPYLPPFPARGSGFHRFAFLLFKQDK 277
Query: 129 --------RPLKCDEPILSNRSGDHRGKFKVASFRKKYE-LRAPVAGTCYQAEWDDYVPK 179
RP C + L+ R+ F F KK++ P +Q WDD V +
Sbjct: 278 RIDFSGDTRPSPCYQ--LAQRT------FHTFDFYKKHQDAMTPAGLAFFQCRWDDSVTR 329
Query: 180 LYEQL 184
++ QL
Sbjct: 330 VFHQL 334
>3J9M-6 nrPDB
Length = 380
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 34/182 (18%)
Query: 21 PQHPLHVTYAGAAVDEL----GKVLTPTQVKNRPTSISWDGLDSGKLYTLV------LTD 70
P+ PLHV YA D + G +TPT+ P ++++ + L+ L +
Sbjct: 169 PRVPLHVAYAVGEDDLMPVYCGNEVTPTEAAQAP-EVTYEAEEGSLWTLLLTSLDGHLLE 227
Query: 71 PDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQDRP 130
PDA E+ H+L+ N+ GN ++ G V Y+ P +G+G+HR +L+++QD+P
Sbjct: 228 PDA---------EYLHWLLTNIPGNRVAEGQVTCPYLPPFPARGSGIHRLAFLLFKQDQP 278
Query: 131 LKCDEPI-------LSNRSGDHRGKFKVASFRKKY-ELRAPVAGTCYQAEWDDYVPKLYE 182
+ E L+ R+ F+ F KK+ E P + +Q WDD V ++
Sbjct: 279 IDFSEDARPSPCYQLAQRT------FRTFDFYKKHQETMTPAGLSFFQCRWDDSVTYIFH 332
Query: 183 QL 184
QL
Sbjct: 333 QL 334
>1WKP-A nrPDB
Length = 171
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 25 LHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYREW 84
L VTY V G L P+QV+N+P + G D YTLV+ DPD PS +P RE+
Sbjct: 31 LKVTYGQREVTN-GLNLRPSQVQNKP-RVEIGGEDLRNFYTLVMVDPDVPSPSNPHLREY 88
Query: 85 HHFLVVNMKGNDISSGTVLSDYVGS--GPPKGTGLHRYVWLVYEQDRPLKCDEPILSNRS 142
H+LV ++ ++GT + + S P G+HR V++++ Q P
Sbjct: 89 LHWLVTDIPA---TTGTTFGNEIVSYENPSPTAGIHRVVFILFRQLGRQTVYAP------ 139
Query: 143 GDHRGKFKVASFRKKYELRAPVAGTCYQAE 172
R F F + Y L PVA Y ++
Sbjct: 140 -GWRQNFNTREFAEIYNLGLPVAAVFYNSQ 168
>3AXY-A nrPDB
Length = 170
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 70/149 (46%), Gaps = 12/149 (8%)
Query: 25 LHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYREW 84
L VTY V G L P+ V ++P + G D YTLV+ DPDAPS DP RE+
Sbjct: 30 LKVTYGSKTVSN-GLELKPSMVTHQP-RVEVGGNDMRTFYTLVMVDPDAPSPSDPNLREY 87
Query: 85 HHFLVVNMKGNDISS-GTVLSDYVGSGPPKGTGLHRYVWLVYEQDRPLKCDEPILSNRSG 143
H+LV ++ G +S G + Y P G+HR V+++++Q P
Sbjct: 88 LHWLVTDIPGTTAASFGQEVMSY--ESPRPTMGIHRLVFVLFQQLGRQTVYAP------- 138
Query: 144 DHRGKFKVASFRKKYELRAPVAGTCYQAE 172
R F F + Y L +PVA + ++
Sbjct: 139 GWRQNFNTKDFAELYNLGSPVAAVYFNSQ 167
>1WKO-A nrPDB
Length = 180
Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 74/156 (47%), Gaps = 13/156 (8%)
Query: 21 PQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPK 80
P ++V+Y V G L P+ V ++P + G D +TLV+ DPD P DP
Sbjct: 30 PTTKMNVSYNKKQVSN-GHELFPSSVSSKP-RVEIHGGDLRSFFTLVMIDPDVPGPSDPF 87
Query: 81 YREWHHFLVVNMKG-NDISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQDRPLKCDEPILS 139
+E H++V N+ G D + G + Y P G+HR+V++++ Q K I
Sbjct: 88 LKEHLHWIVTNIPGTTDATFGKEVVSY--ELPRPSIGIHRFVFVLFRQ----KQRRVIFP 141
Query: 140 NR-SGDHRGKFKVASFRKKYELRAPVAGTCYQAEWD 174
N S DH F F +Y+L PVA + A+ +
Sbjct: 142 NIPSRDH---FNTRKFAVEYDLGLPVAAVFFNAQRE 174
>1WPX-B nrPDB
Length = 220
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 32/148 (21%)
Query: 14 LQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPT-SISWDGL-------------D 59
+ + QP L V Y+ +A +G L + +++P +++
Sbjct: 26 IHDTSFQPSGILAVEYSSSAPVAMGNTLPTEKARSKPQFQFTFNKQMQKSVPQANAYVPQ 85
Query: 60 SGKLYTLVLTDPDAPSRKDPKYREWHHFL-----VVNMKGNDISSGT------------- 101
L+TLV+TDPDAPS+ D K+ E+ H + ++N ++ S T
Sbjct: 86 DDDLFTLVMTDPDAPSKTDHKWSEFCHLVECDLKLLNEATHETSGATEFFASEFNTKGSN 145
Query: 102 VLSDYVGSGPPKGTGLHRYVWLVYEQDR 129
L +Y+G PPKG+G HRYV+L+Y+Q +
Sbjct: 146 TLIEYMGPAPPKGSGPHRYVFLLYKQPK 173
>1QOU-A nrPDB
Length = 181
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 66/139 (47%), Gaps = 10/139 (7%)
Query: 38 GKVLTPTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKG-ND 96
G L P+ V + P + G D +TL++TDPD P DP RE H++V ++ G D
Sbjct: 45 GHELFPSAVTSTP-RVEVHGGDMRSFFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTD 103
Query: 97 ISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQ-DRPLKCDEPILSNRSGDHRGKFKVASFR 155
S G + Y P G+HR+V+L+++Q R P + R G F F
Sbjct: 104 SSFGKEVVSY--EMPRPNIGIHRFVFLLFKQKKRGQAMLSPPVVCRDG-----FNTRKFT 156
Query: 156 KKYELRAPVAGTCYQAEWD 174
++ EL PVA + + +
Sbjct: 157 QENELGLPVAAVFFNCQRE 175
>5MRC-1 nrPDB
Length = 348
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 16/135 (11%)
Query: 62 KLYTLVLTDPDAPSRKDPKYRE--WHHFLVVNMKGND-------ISSGTVLSDYVGSGPP 112
+LYT+++ +PD P + ++ + + +N+ ND S +++DY+ P
Sbjct: 203 QLYTVLIVNPDVPDLSNDSFKTALCYGLVNINLTYNDNLIDPRKFHSSNIIADYLPPVPE 262
Query: 113 KGTGLHRYVWLVYEQDRPLKCDEP----ILSNRSGDHRGKFKVASFRKKYELRAPVAGTC 168
K G R+V V+ Q PL D+ + +R R F + F KKY L A +
Sbjct: 263 KNAGKQRFVVWVFRQ--PLIEDKQGPNMLEIDRKELSRDDFDIRQFTKKYNLTA-IGAHI 319
Query: 169 YQAEWDDYVPKLYEQ 183
+++EWD V + E+
Sbjct: 320 WRSEWDAKVAAVREK 334
>2R77-A nrPDB
Length = 205
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 25 LHVTYAGAAVDELGKVLTPTQVKNRPTSISW-DGLDSGKLYTLVLTDPDAPSRKDPKYRE 83
L +++ G VL + P +I + + G + L + DPD PSR P +E
Sbjct: 46 LFISFKAGKEVNHGNVLDIAGTGSVPRNIKFSEEPPDGYCFVLFMVDPDYPSRLRPDGKE 105
Query: 84 WHHFLVVNMKGNDISSGT-----VLSDYVGSGPPKGTGLHR---YVWLVYEQDR 129
+ H++V +K ++ GT + YVG KGTGLHR + L+ E+D+
Sbjct: 106 YIHWVVSGIKTKELIKGTQKNCVTILPYVGPSIKKGTGLHRISFIISLIKEEDK 159
>4BEG-A nrPDB
Length = 178
Score = 33.1 bits (74), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 25/93 (26%)
Query: 53 ISWDGLDS-GKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGN------------DISS 99
+ W G S + + + + DPDAP+ + H+ V N+ N ++
Sbjct: 52 LRWSGFPSETRSFAVTVYDPDAPTLSG-----FWHWAVANLPANVTELPEGVGDGRELPG 106
Query: 100 G--TVLSD-----YVGSGPPKGTGLHRYVWLVY 125
G T+++D YVG+ PP G G+HRY V+
Sbjct: 107 GALTLVNDAGMRRYVGAAPPPGHGVHRYYVAVH 139
>6FKM-A nrPDB
Length = 715
Score = 32.0 bits (71), Expect = 0.15, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 94 GNDISSGTVLSDYVGSGPPKGTGLH-RYVWLVYEQDRPLKCDEPILSNRSGDHRGKFKVA 152
ND +S TV ++ GPP+ + YV + Y + P + + P +++RS + F++A
Sbjct: 157 ANDANSSTVA--FIAPGPPQHPVTNVMYVGVTYTNNSPYRSEIPAVASRSLEKTKMFQIA 214
Query: 153 S 153
S
Sbjct: 215 S 215
>2XD4-A nrPDB
Length = 422
Score = 29.6 bits (65), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 44 TQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVL 103
Q K P I DGL +GK T+ +T+ +A + H FL + K D S+ V+
Sbjct: 133 VQEKGAPIVIKADGLAAGKGVTVAMTEEEAIAC-------LHDFL-EDEKFGDASASVVI 184
Query: 104 SDYV 107
+Y+
Sbjct: 185 EEYL 188
>4Y23-A nrPDB
Length = 585
Score = 28.5 bits (62), Expect = 1.9, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 16/102 (15%)
Query: 25 LHVTYAGAA--------VD-ELGKVLTPTQVKNRPTSISWDGLD----SGKLYTLVLTDP 71
+H++YA A VD L +L P +K R IS D ++ G + +P
Sbjct: 324 MHLSYADRAAYAGDPEFVDVPLRGLLDPDYIKERQKLISLDSMNRDVKEGDPWKYEEGEP 383
Query: 72 D---APSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSG 110
+ P +D E HF V + GN +S T + G+G
Sbjct: 384 NYEIVPQPEDKTIGEATHFTVTDQWGNVVSYTTTIEQLFGTG 425
>3PXX-A nrPDB
Length = 287
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 28 TYAGAAVD----ELGKVLTPTQVKNR---PTSISWDGLDSGKLYTLVLTDPDAPSRKD 78
+YA VD +L L P ++ PT+++ D L+S +Y D +APSR D
Sbjct: 179 SYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLNSAPMYRQFRPDLEAPSRAD 236
>4LB0-A nrPDB
Length = 348
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 78 DPKYREWHHFLVVNMKGNDISSGTVL 103
DPK RE HFLV+ +G I S +L
Sbjct: 45 DPKGRELRHFLVLEPRGAPIGSVNLL 70
>5UJ8-A nrPDB
Length = 712
Score = 27.7 bits (60), Expect = 3.1, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 34 VDELGKVLTPTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYREWHH-FLVVNM 92
VD K V R T S D L S + TDP S+K +W +VV +
Sbjct: 160 VDIKSKEEESVHVTQRKTHYSMDSLSSWYMTVTQKTDPKMLSKKRTTSSQWQSPPVVVIL 219
Query: 93 KGNDISSGTVLSDYV 107
K + + VL D++
Sbjct: 220 KDMESFATKVLQDFI 234
>3HJB-A nrPDB
Length = 574
Score = 27.3 bits (59), Expect = 3.9, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 110 GPPKGTGLHRYVWLVYEQDRPLKCD--EPILS-NRSGDHRGKFKVASFRKKYELRAPVAG 166
G P G H + L+++ + + CD P +S N GDH K F + L +
Sbjct: 403 GEPGTNGQHAFYQLIHQGTKLIPCDFIAPAVSHNLVGDHHQKLMSNFFAQTEALAFGKSA 462
Query: 167 TCYQAE 172
QAE
Sbjct: 463 QAVQAE 468
>4QLA-A nrPDB
Length = 447
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 1 MP-VDLSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGL 58
MP +DL +W GP L++ + P +T++ V EL + + K RP + +G+
Sbjct: 16 MPKLDLEEWWGPPELKQKQDTSIKPFEITFSETMVKELKERIK----KRRPFAPPLEGV 70
>4EZI-A nrPDB
Length = 377
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 72 DAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYV 121
D PSR + K +++ + GN TV+ DY+G G + T LH YV
Sbjct: 89 DVPSRNNEK-----NYIYLAAYGNSAGYMTVMPDYLGLGDNELT-LHPYV 132
>1Q4R-A nrPDB
Length = 112
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 13 SLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSIS 54
S + V E HP HV +A + L KVL + +PTS+S
Sbjct: 73 SKEAVAEYIAHPAHVEFATIFLGSLDKVLV---IDYKPTSVS 111
>5O46-B nrPDB
Length = 120
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 78 DPKYREWHHFLVVNMKGNDISSGTVLS 104
DP+Y+EW HF + + N + T+++
Sbjct: 15 DPRYKEWAHFAISSQVENRTNFDTLMT 41
>1VPE-A nrPDB
Length = 398
Score = 26.2 bits (56), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 8 WSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKV 40
W+GP+ + E+D+ + V A AA+ E G +
Sbjct: 315 WNGPMGVFEIDDFAEGTKQVALAIAALTEKGAI 347
>4ZDJ-A nrPDB
Length = 587
Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 23 HPLHVTYAGAAVDELGKVLTPTQVKNRP 50
HPL V + GAA+D L P ++ P
Sbjct: 536 HPLFVAFVGAAIDYKAGELLPVEIPEIP 563
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
1BEH-A nrPDB 297 2e-81
6ENS-A nrPDB 292 7e-80
1A44-A nrPDB 291 1e-79
2IQX-A nrPDB 289 4e-79
1KN3-A nrPDB 283 2e-77
1WKP-A nrPDB 176 5e-45
3AXY-A nrPDB 172 9e-44
1WKO-A nrPDB 170 3e-43
6GAW-Bb nrPDB 168 1e-42
1QOU-A nrPDB 167 3e-42
3J9M-6 nrPDB 158 1e-39
5MRC-1 nrPDB 129 8e-31
2R77-A nrPDB 126 4e-30
1WPX-B nrPDB 126 4e-30
Sequences not found previously or not previously below threshold:
6HIV-Ab nrPDB 44 6e-05
1FUX-A nrPDB 42 2e-04
4BEG-A nrPDB 40 7e-04
3EYB-A nrPDB 31 0.46
2GL8-A nrPDB 29 0.91
5KYA-B nrPDB 29 1.5
1H9U-A nrPDB 29 1.5
6HN6-A nrPDB 27 3.9
5EC9-A nrPDB 27 3.9
4OC7-A nrPDB 27 3.9
4NQA-A nrPDB 27 3.9
3DZU-A nrPDB 27 4.2
>1BEH-A nrPDB
Length = 187
Score = 297 bits (760), Expect = 2e-81, Method: Composition-based stats.
Identities = 187/187 (100%), Positives = 187/187 (100%)
Query: 1 MPVDLSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDS 60
MPVDLSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDS
Sbjct: 1 MPVDLSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDS 60
Query: 61 GKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRY 120
GKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRY
Sbjct: 61 GKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRY 120
Query: 121 VWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPKL 180
VWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPKL
Sbjct: 121 VWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPKL 180
Query: 181 YEQLSGK 187
YEQLSGK
Sbjct: 181 YEQLSGK 187
>6ENS-A nrPDB
Length = 193
Score = 292 bits (747), Expect = 7e-80, Method: Composition-based stats.
Identities = 160/186 (86%), Positives = 170/186 (91%)
Query: 2 PVDLSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDSG 61
D+S+W+GPL LQEVDE PQH L V YAG VDELGKVLTPTQV NRP+SISWDGLD G
Sbjct: 8 AADISQWAGPLCLQEVDEPPQHALRVDYAGVTVDELGKVLTPTQVMNRPSSISWDGLDPG 67
Query: 62 KLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYV 121
KLYTLVLTDPDAPSRKDPK+REWHHFLVVNMKGNDISSGTVLSDYVGSGPP GTGLHRYV
Sbjct: 68 KLYTLVLTDPDAPSRKDPKFREWHHFLVVNMKGNDISSGTVLSDYVGSGPPSGTGLHRYV 127
Query: 122 WLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPKLY 181
WLVYEQ++PL CDEPILSN+SGD+RGKFKV +FRKKY L APVAGTCYQAEWDDYVPKLY
Sbjct: 128 WLVYEQEQPLSCDEPILSNKSGDNRGKFKVETFRKKYNLGAPVAGTCYQAEWDDYVPKLY 187
Query: 182 EQLSGK 187
EQLSGK
Sbjct: 188 EQLSGK 193
>1A44-A nrPDB
Length = 185
Score = 291 bits (745), Expect = 1e-79, Method: Composition-based stats.
Identities = 174/185 (94%), Positives = 178/185 (96%)
Query: 2 PVDLSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDSG 61
PVDLSKWSGPLSLQEVDE+PQHPL V Y GA VDELGKVLTPTQVKNRPTSI+WDGLD G
Sbjct: 1 PVDLSKWSGPLSLQEVDERPQHPLQVKYGGAEVDELGKVLTPTQVKNRPTSITWDGLDPG 60
Query: 62 KLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYV 121
KLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGN+ISSGTVLSDYVGSGPPKGTGLHRYV
Sbjct: 61 KLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNNISSGTVLSDYVGSGPPKGTGLHRYV 120
Query: 122 WLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPKLY 181
WLVYEQ+ PLKCDEPILSNRSGDHRGKFKVASFRKKYEL APVAGTCYQAEWDDYVPKLY
Sbjct: 121 WLVYEQEGPLKCDEPILSNRSGDHRGKFKVASFRKKYELGAPVAGTCYQAEWDDYVPKLY 180
Query: 182 EQLSG 186
EQLSG
Sbjct: 181 EQLSG 185
>2IQX-A nrPDB
Length = 187
Score = 289 bits (740), Expect = 4e-79, Method: Composition-based stats.
Identities = 155/187 (82%), Positives = 169/187 (90%)
Query: 1 MPVDLSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDS 60
M D+S+W+GPLSLQEVDE PQH L V Y G VDELGKVLTPTQV NRP+SISWDGLD
Sbjct: 1 MAADISQWAGPLSLQEVDEPPQHALRVDYGGVTVDELGKVLTPTQVMNRPSSISWDGLDP 60
Query: 61 GKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRY 120
GKLYTLVLTDPDAPSRKDPK+REWHHFLVVNMKGNDISSGTVLS+YVGSGPPK TGLHRY
Sbjct: 61 GKLYTLVLTDPDAPSRKDPKFREWHHFLVVNMKGNDISSGTVLSEYVGSGPPKDTGLHRY 120
Query: 121 VWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPKL 180
VWLVYEQ++PL CDEPILSN+SGD+RGKFKV FRKKY L APVAGTC+QAEWDD VPKL
Sbjct: 121 VWLVYEQEQPLNCDEPILSNKSGDNRGKFKVEEFRKKYHLGAPVAGTCFQAEWDDSVPKL 180
Query: 181 YEQLSGK 187
++QL+GK
Sbjct: 181 HDQLAGK 187
>1KN3-A nrPDB
Length = 183
Score = 283 bits (725), Expect = 2e-77, Method: Composition-based stats.
Identities = 155/183 (84%), Positives = 167/183 (91%)
Query: 5 LSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDSGKLY 64
+S W+GPLSL EVDEQPQH L VTY A V+ELG+VLTPTQVK+RP SISWDGLD GKLY
Sbjct: 1 MSMWTGPLSLHEVDEQPQHLLRVTYTEAEVEELGQVLTPTQVKHRPGSISWDGLDPGKLY 60
Query: 65 TLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYVWLV 124
TL+LTDPDAPSRK P YREWHHFLVVNMKGNDISSG VLSDYVGSGPPKGTGLHRYVWLV
Sbjct: 61 TLILTDPDAPSRKKPVYREWHHFLVVNMKGNDISSGNVLSDYVGSGPPKGTGLHRYVWLV 120
Query: 125 YEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPKLYEQL 184
Y+QD+PL+CDEPIL+NRSGDHRGKFK A+FRKKY L APVAGTCYQAEWD YVPKLY+QL
Sbjct: 121 YQQDKPLRCDEPILTNRSGDHRGKFKTAAFRKKYHLGAPVAGTCYQAEWDSYVPKLYKQL 180
Query: 185 SGK 187
SGK
Sbjct: 181 SGK 183
>1WKP-A nrPDB
Length = 171
Score = 176 bits (446), Expect = 5e-45, Method: Composition-based stats.
Identities = 47/158 (29%), Positives = 68/158 (43%), Gaps = 12/158 (7%)
Query: 19 EQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKD 78
L VTY V G L P+QV+N+P + G D YTLV+ DPD PS +
Sbjct: 25 FNRSITLKVTYGQREVTN-GLNLRPSQVQNKP-RVEIGGEDLRNFYTLVMVDPDVPSPSN 82
Query: 79 PKYREWHHFLVVNMKGND-ISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQDRPLKCDEPI 137
P RE+ H+LV ++ + G + Y P G+HR V++++ Q P
Sbjct: 83 PHLREYLHWLVTDIPATTGTTFGNEIVSY--ENPSPTAGIHRVVFILFRQLGRQTVYAP- 139
Query: 138 LSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDD 175
R F F + Y L PVA Y ++ +
Sbjct: 140 ------GWRQNFNTREFAEIYNLGLPVAAVFYNSQRES 171
>3AXY-A nrPDB
Length = 170
Score = 172 bits (435), Expect = 9e-44, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 71/155 (45%), Gaps = 12/155 (7%)
Query: 22 QHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKY 81
L VTY V G L P+ V ++P + G D YTLV+ DPDAPS DP
Sbjct: 27 STNLKVTYGSKTVSN-GLELKPSMVTHQP-RVEVGGNDMRTFYTLVMVDPDAPSPSDPNL 84
Query: 82 REWHHFLVVNMKGNDISS-GTVLSDYVGSGPPKGTGLHRYVWLVYEQDRPLKCDEPILSN 140
RE+ H+LV ++ G +S G + Y P G+HR V+++++Q P
Sbjct: 85 REYLHWLVTDIPGTTAASFGQEVMSY--ESPRPTMGIHRLVFVLFQQLGRQTVYAP---- 138
Query: 141 RSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDD 175
R F F + Y L +PVA + ++ +
Sbjct: 139 ---GWRQNFNTKDFAELYNLGSPVAAVYFNSQREA 170
>1WKO-A nrPDB
Length = 180
Score = 170 bits (431), Expect = 3e-43, Method: Composition-based stats.
Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 11/162 (6%)
Query: 19 EQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKD 78
P ++V+Y V G L P+ V ++P + G D +TLV+ DPD P D
Sbjct: 28 FTPTTKMNVSYNKKQVSN-GHELFPSSVSSKP-RVEIHGGDLRSFFTLVMIDPDVPGPSD 85
Query: 79 PKYREWHHFLVVNMKG-NDISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQDRPLKCDEPI 137
P +E H++V N+ G D + G + Y P G+HR+V++++ Q + I
Sbjct: 86 PFLKEHLHWIVTNIPGTTDATFGKEVVSY--ELPRPSIGIHRFVFVLFRQKQR----RVI 139
Query: 138 LSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPK 179
N R F F +Y+L PVA + A+ + K
Sbjct: 140 FPNIP--SRDHFNTRKFAVEYDLGLPVAAVFFNAQRETAARK 179
>6GAW-Bb nrPDB
Length = 380
Score = 168 bits (425), Expect = 1e-42, Method: Composition-based stats.
Identities = 51/177 (28%), Positives = 86/177 (48%), Gaps = 10/177 (5%)
Query: 14 LQEVDEQPQHPLHVTYAGAAVDEL----GKVLTPTQVKNRPTSISWDGLDSGKLYTLVLT 69
P+ PLHV YA D + G +TPT+ P ++++ D G L+TL+LT
Sbjct: 162 FHGATFVPRVPLHVAYAVGEDDLMPVYHGNEVTPTEAAQAP-EVTYEA-DEGSLWTLLLT 219
Query: 70 DPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQDR 129
+ D +P E+ H+LV N+ GN ++ G Y+ P +G+G HR+ +L+++QD+
Sbjct: 220 NLDG-HLLEPD-AEYVHWLVTNIPGNRVTEGQETCPYLPPFPARGSGFHRFAFLLFKQDK 277
Query: 130 PLKCDEPILSNRS-GDHRGKFKVASFRKKY-ELRAPVAGTCYQAEWDDYVPKLYEQL 184
+ + + F F KK+ + P +Q WDD V +++ QL
Sbjct: 278 RIDFSGDTRPSPCYQLAQRTFHTFDFYKKHQDAMTPAGLAFFQCRWDDSVTRVFHQL 334
>1QOU-A nrPDB
Length = 181
Score = 167 bits (422), Expect = 3e-42, Method: Composition-based stats.
Identities = 50/185 (27%), Positives = 78/185 (42%), Gaps = 21/185 (11%)
Query: 1 MPVDLSKWSGPLSLQEV------DEQPQHPLHVTYAGAAVDEL---GKVLTPTQVKNRPT 51
M +S S PL + V + V Y + G L P+ V + P
Sbjct: 1 MAAKVS--SDPLVIGRVIGDVVDHFTSTVKMSVIYNSNNSIKHVYNGHELFPSAVTSTP- 57
Query: 52 SISWDGLDSGKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKG-NDISSGTVLSDYVGSG 110
+ G D +TL++TDPD P DP RE H++V ++ G D S G + Y
Sbjct: 58 RVEVHGGDMRSFFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSSFGKEVVSY--EM 115
Query: 111 PPKGTGLHRYVWLVYEQDRP-LKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCY 169
P G+HR+V+L+++Q + P + R G F F ++ EL PVA +
Sbjct: 116 PRPNIGIHRFVFLLFKQKKRGQAMLSPPVVCRDG-----FNTRKFTQENELGLPVAAVFF 170
Query: 170 QAEWD 174
+ +
Sbjct: 171 NCQRE 175
>3J9M-6 nrPDB
Length = 380
Score = 158 bits (400), Expect = 1e-39, Method: Composition-based stats.
Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 22/183 (12%)
Query: 14 LQEVDEQPQHPLHVTYAGAAVDEL----GKVLTPTQVKNRPTSISWDGLDSGKLYTLV-- 67
P+ PLHV YA D + G +TPT+ P ++++ + L+
Sbjct: 162 FHGATFVPRVPLHVAYAVGEDDLMPVYCGNEVTPTEAAQAP-EVTYEAEEGSLWTLLLTS 220
Query: 68 ----LTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYVWL 123
L +PDA E+ H+L+ N+ GN ++ G V Y+ P +G+G+HR +L
Sbjct: 221 LDGHLLEPDA---------EYLHWLLTNIPGNRVAEGQVTCPYLPPFPARGSGIHRLAFL 271
Query: 124 VYEQDRPLKCDEPILSNRS-GDHRGKFKVASFRKKY-ELRAPVAGTCYQAEWDDYVPKLY 181
+++QD+P+ E + + F+ F KK+ E P + +Q WDD V ++
Sbjct: 272 LFKQDQPIDFSEDARPSPCYQLAQRTFRTFDFYKKHQETMTPAGLSFFQCRWDDSVTYIF 331
Query: 182 EQL 184
QL
Sbjct: 332 HQL 334
>5MRC-1 nrPDB
Length = 348
Score = 129 bits (323), Expect = 8e-31, Method: Composition-based stats.
Identities = 42/184 (22%), Positives = 78/184 (42%), Gaps = 25/184 (13%)
Query: 21 PQHPLHVTY----AGAAVDELGKVLTPTQVKNRPTSISWDGLD----SGKLYTLVLTDPD 72
P+ +++ + E G+ L+ RP + +LYT+++ +PD
Sbjct: 155 PRAEVNIKFPFSTGVNKWIEPGEFLSSNVTSMRPI-FKIQEYELVNVEKQLYTVLIVNPD 213
Query: 73 APSRKDPKYRE--WHHFLVVNMKGND-------ISSGTVLSDYVGSGPPKGTGLHRYVWL 123
P + ++ + + +N+ ND S +++DY+ P K G R+V
Sbjct: 214 VPDLSNDSFKTALCYGLVNINLTYNDNLIDPRKFHSSNIIADYLPPVPEKNAGKQRFVVW 273
Query: 124 VYEQDRPLKCDEP----ILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPK 179
V+ Q PL D+ + +R R F + F KKY L A + +++EWD V
Sbjct: 274 VFRQ--PLIEDKQGPNMLEIDRKELSRDDFDIRQFTKKYNLTA-IGAHIWRSEWDAKVAA 330
Query: 180 LYEQ 183
+ E+
Sbjct: 331 VREK 334
>2R77-A nrPDB
Length = 205
Score = 126 bits (317), Expect = 4e-30, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 59/138 (42%), Gaps = 9/138 (6%)
Query: 25 LHVTYAGAAVDELGKVLTPTQVKNRPTSISW-DGLDSGKLYTLVLTDPDAPSRKDPKYRE 83
L +++ G VL + P +I + + G + L + DPD PSR P +E
Sbjct: 46 LFISFKAGKEVNHGNVLDIAGTGSVPRNIKFSEEPPDGYCFVLFMVDPDYPSRLRPDGKE 105
Query: 84 WHHFLVVNMKGNDISSGT-----VLSDYVGSGPPKGTGLHRYVW---LVYEQDRPLKCDE 135
+ H++V +K ++ GT + YVG KGTGLHR + L+ E+D+
Sbjct: 106 YIHWVVSGIKTKELIKGTQKNCVTILPYVGPSIKKGTGLHRISFIISLIKEEDKDNITGL 165
Query: 136 PILSNRSGDHRGKFKVAS 153
P R KF
Sbjct: 166 PHYKGEKYITRVKFNNYE 183
>1WPX-B nrPDB
Length = 220
Score = 126 bits (317), Expect = 4e-30, Method: Composition-based stats.
Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 36/194 (18%)
Query: 14 LQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPT-SISWDG-------------LD 59
+ + QP L V Y+ +A +G L + +++P +++
Sbjct: 26 IHDTSFQPSGILAVEYSSSAPVAMGNTLPTEKARSKPQFQFTFNKQMQKSVPQANAYVPQ 85
Query: 60 SGKLYTLVLTDPDAPSRKDPKYREWHHFL-----VVNMKGNDISSGT------------- 101
L+TLV+TDPDAPS+ D K+ E+ H + ++N ++ S T
Sbjct: 86 DDDLFTLVMTDPDAPSKTDHKWSEFCHLVECDLKLLNEATHETSGATEFFASEFNTKGSN 145
Query: 102 VLSDYVGSGPPKGTGLHRYVWLVYEQDRPLKCDEPILSNRSGDH---RGKFKVASFRKKY 158
L +Y+G PPKG+G HRYV+L+Y+Q + + + + V + K+
Sbjct: 146 TLIEYMGPAPPKGSGPHRYVFLLYKQPKGVDSSKFSKIKDRPNWGYGTPATGVGKWAKEN 205
Query: 159 ELRAPVAGTCYQAE 172
L+ VA + AE
Sbjct: 206 NLQL-VASNFFYAE 218
>6HIV-Ab nrPDB
Length = 507
Score = 43.6 bits (101), Expect = 6e-05, Method: Composition-based stats.
Identities = 34/205 (16%), Positives = 62/205 (30%), Gaps = 68/205 (33%)
Query: 41 LTPTQVKNRPTSISWDGLDSGK---LYTLVLTDPDAP----------------------- 74
L + ++ D + G YTL++ PD P
Sbjct: 224 LDTVSATGQGKAVEKDATEEGSDEVWYTLIIASPDYPFRVPASVDASTQRGFFLNYMMSN 283
Query: 75 ----------------SRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLH 118
R++ + R+ LV N G V+ Y P + G
Sbjct: 284 LKGGGNSTVLEEYESEQRQNNQKRQHLEELVRN-PAPIAKEGDVIVSYTPPLPTEDAGTT 342
Query: 119 RYVWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKY------------ELRA---- 162
R++ ++++Q + S D + F + + + E+ +
Sbjct: 343 RHICMLFKQ----RSYVSGASCALDDSKASFAARANFRLHAQHRDGIPSSSVEMLSRIEQ 398
Query: 163 -----PVAGTCYQAEWDDYVPKLYE 182
P A T +Q +WD V + YE
Sbjct: 399 VLPPDPSAVTFFQTKWDIQVQEFYE 423
>1FUX-A nrPDB
Length = 166
Score = 42.1 bits (97), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/164 (22%), Positives = 62/164 (37%), Gaps = 38/164 (23%)
Query: 32 AAVDELGKVLTPTQV--------KNRPTSISWDGLDSG-KLYTLVLTDPDAPSRKDPKYR 82
+ + G+ LT + V N S++W G+ G K + + + DPDAP+
Sbjct: 7 SNEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGVPEGTKSFAVTVYDPDAPTGSG---- 62
Query: 83 EWHHFLVVNMK--------------GNDISSGTV-------LSDYVGSGPPKGTGLHRY- 120
W H+ VVN+ G + +G V + + G+ PPKG H Y
Sbjct: 63 -WWHWTVVNIPATVTYLPVDAGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQ 121
Query: 121 --VWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRA 162
VW + + P+ + + K A YE++
Sbjct: 122 FKVWALKTEKIPVDSNSSGALVGYMLNANKIATAEITPVYEIKL 165
>4BEG-A nrPDB
Length = 178
Score = 39.8 bits (91), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 25/97 (25%)
Query: 44 TQVKNRPTSISWDG-LDSGKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGN------- 95
+ + W G + + + + DPDAP+ + H+ V N+ N
Sbjct: 43 AGGADASPQLRWSGFPSETRSFAVTVYDPDAPTLSG-----FWHWAVANLPANVTELPEG 97
Query: 96 -----DISSGTVLS-------DYVGSGPPKGTGLHRY 120
++ G + YVG+ PP G G+HRY
Sbjct: 98 VGDGRELPGGALTLVNDAGMRRYVGAAPPPGHGVHRY 134
>3EYB-A nrPDB
Length = 219
Score = 30.5 bits (67), Expect = 0.46, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 25 LHVTYAGAAVDELGKVLT--PTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYR 82
LHV + A +G + T++ + + D + G L +VL +PDA DP
Sbjct: 94 LHVHRSSAHQAGVGTIFDRVLTELVAKMRDMKMDKTELGCLRAIVLFNPDAKGLTDPSLV 153
Query: 83 EWH 85
E
Sbjct: 154 ESL 156
>2GL8-A nrPDB
Length = 241
Score = 29.4 bits (64), Expect = 0.91, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 25 LHVTYAGAAVDELGKVLT--PTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYR 82
LHV + A +G + T++ ++ + D + G L +VL +PDA +P
Sbjct: 109 LHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEV 168
Query: 83 EWH 85
E
Sbjct: 169 ETL 171
>5KYA-B nrPDB
Length = 256
Score = 28.6 bits (62), Expect = 1.5, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 25 LHVTYAGAAVDELGKVLT--PTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYR 82
LHV A +G + T++ ++ + D + G L ++L +PDA +P
Sbjct: 110 LHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEV 169
Query: 83 EWH 85
E
Sbjct: 170 EVL 172
>1H9U-A nrPDB
Length = 224
Score = 28.6 bits (62), Expect = 1.5, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 25 LHVTYAGAAVDELGKVLT--PTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYR 82
LHV A +G + T++ ++ + D + G L ++L +PDA +P
Sbjct: 103 LHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEV 162
Query: 83 EWH 85
E
Sbjct: 163 EVL 165
>6HN6-A nrPDB
Length = 282
Score = 27.4 bits (59), Expect = 3.9, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 25 LHVTYAGAAVDELGKVLT--PTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYR 82
LHV A +G + T++ ++ + D + G L +VL +PD+ +P
Sbjct: 150 LHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEV 209
Query: 83 EWH 85
E
Sbjct: 210 EAL 212
>5EC9-A nrPDB
Length = 210
Score = 27.4 bits (59), Expect = 3.9, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 25 LHVTYAGAAVDELGKVLT--PTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYR 82
LHV A +G + T++ ++ + D + G L +VL +PD+ +P
Sbjct: 84 LHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEV 143
Query: 83 EWH 85
E
Sbjct: 144 EAL 146
>4OC7-A nrPDB
Length = 254
Score = 27.4 bits (59), Expect = 3.9, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 25 LHVTYAGAAVDELGKVLT--PTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYR 82
LHV A +G + T++ ++ + D + G L +VL +PD+ +P
Sbjct: 122 LHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEV 181
Query: 83 EWH 85
E
Sbjct: 182 EAL 184
>4NQA-A nrPDB
Length = 365
Score = 27.4 bits (59), Expect = 3.9, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 25 LHVTYAGAAVDELGKVLT--PTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYR 82
LHV A +G + T++ ++ + D + G L +VL +PD+ +P
Sbjct: 233 LHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEV 292
Query: 83 EWH 85
E
Sbjct: 293 EAL 295
>3DZU-A nrPDB
Length = 467
Score = 27.4 bits (59), Expect = 4.2, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 25 LHVTYAGAAVDELGKVLT--PTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYR 82
LHV A +G + T++ ++ + D + G L +VL +PD+ +P
Sbjct: 335 LHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEV 394
Query: 83 EWH 85
E
Sbjct: 395 EAL 397
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.304 0.125 0.335
Lambda K H
0.267 0.0386 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,599,151
Number of Sequences: 36641
Number of extensions: 291774
Number of successful extensions: 573
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 486
Number of HSP's gapped (non-prelim): 61
length of query: 187
length of database: 10,336,785
effective HSP length: 91
effective length of query: 96
effective length of database: 7,002,454
effective search space: 672235584
effective search space used: 672235584
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.4 bits)
S2: 56 (26.3 bits)