BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P30043 (206 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 1HE4-A nrPDB 420 e-118 2ZCU-A nrPDB 35 0.027 4NQY-A nrPDB 34 0.051 2BKA-A nrPDB 32 0.14 6GCS-E nrPDB 32 0.25 5JFC-L nrPDB 30 0.66 5VJ7-A nrPDB 30 0.67 1I3M-A nrPDB 29 1.5 5NMX-A nrPDB 29 1.7 1UDA-A nrPDB 28 2.4 5F56-A nrPDB 28 2.7 4B03-A nrPDB 28 3.0 1XTP-A nrPDB 28 3.4 4GSX-A nrPDB 28 3.8 6GPK-A nrPDB 27 5.3 1QYC-A nrPDB 27 5.7 4ZP1-A nrPDB 27 8.6 2Q4B-A nrPDB 26 9.8 >1HE4-A nrPDB Length = 206 Score = 420 bits (1079), Expect = e-118, Method: Compositional matrix adjust. Identities = 206/206 (100%), Positives = 206/206 (100%) Query: 1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAAD 60 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAAD Sbjct: 1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAAD 60 Query: 61 VDKTVAGQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTK 120 VDKTVAGQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTK Sbjct: 61 VDKTVAGQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTK 120 Query: 121 VPPRLQAVTDDHIRMHKVLRESGLKYVAVMPPHIGDQPLTGAYTVTLDGRGPSRVISKHD 180 VPPRLQAVTDDHIRMHKVLRESGLKYVAVMPPHIGDQPLTGAYTVTLDGRGPSRVISKHD Sbjct: 121 VPPRLQAVTDDHIRMHKVLRESGLKYVAVMPPHIGDQPLTGAYTVTLDGRGPSRVISKHD 180 Query: 181 LGHFMLRCLTTDEYDGHSTYPSHQYQ 206 LGHFMLRCLTTDEYDGHSTYPSHQYQ Sbjct: 181 LGHFMLRCLTTDEYDGHSTYPSHQYQ 206 >2ZCU-A nrPDB Length = 286 Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 18/145 (12%) Query: 6 IAIFGATGQTG---LTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVD 62 IAI GATGQ G + +L + V A ++ +VR+ ++ + + V D A + Sbjct: 2 IAITGATGQLGHYVIESLMKTVPAS-QIVAIVRNPAKAQALAAQGITVRQADYGDEAALT 60 Query: 63 KTVAGQDAVIVLLGTR-NDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTKV 121 + G + ++++ + +P RN++ A KA GV K +A TS L D + + Sbjct: 61 SALQGVEKLLLISSSEVGQRAPQH------RNVINAAKAAGV-KFIAYTS-LLHADTSPL 112 Query: 122 PPRLQAVTDDHIRMHKVLRESGLKY 146 + D+HI K+L +SG+ Y Sbjct: 113 -----GLADEHIETEKMLADSGIVY 132 >4NQY-A nrPDB Length = 443 Score = 33.9 bits (76), Expect = 0.051, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 95 VAAMKAHGVDKVVACTSAFLLWDPTKVPPRLQAVTDDHIRMHKVLRESGLKY 146 V +K +G++KV +L+D +VP ++HI M K ++E G+KY Sbjct: 62 VNTLKEYGIEKVWNPEKIVILFD-HQVPADSIKAAENHILMRKFVKEQGIKY 112 >2BKA-A nrPDB Length = 242 Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%) Query: 1 MAVKKIAIFGATGQTGLTTLAQAVQAGY--EVTVLVRDSSRLPSEGPRPAHVVVGDVLQA 58 M K + I GA+G+TG L + ++ G +VT++ R E + + V D + Sbjct: 16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKL 75 Query: 59 ADVDKTVAGQDAVIVLLGT 77 D G D LGT Sbjct: 76 DDYASAFQGHDVGFCCLGT 94 >6GCS-E nrPDB Length = 375 Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 8/113 (7%) Query: 8 IFGATGQTGLTTLAQAVQAGYEVTVLVRDS---SRLPSEGPR-PAHVVVGDVLQAADVDK 63 +FGA G G A+ + G V V R+ L G + + D+ +D+ Sbjct: 58 VFGANGFLGSYLTAKLAKHGTTVVVPYREEMAKRHLKVTGDLGVVNFLEMDLRNLESIDE 117 Query: 64 TVAGQDAVIVLLGTR---NDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAF 113 V D V+ L+G + + V EGAR I A+K H + + + SAF Sbjct: 118 AVRHSDIVVNLIGREYETKNFNYYDVHVEGARRIAEAVKKHNIARYIHV-SAF 169 >5JFC-L nrPDB Length = 474 Score = 30.0 bits (66), Expect = 0.66, Method: Compositional matrix adjust. Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 1/29 (3%) Query: 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTV 32 KK+AI GA G GLT A + GYEVT+ Sbjct: 155 KKVAIIGA-GPAGLTCAADLAKMGYEVTI 182 >5VJ7-A nrPDB Length = 476 Score = 30.0 bits (66), Expect = 0.67, Method: Compositional matrix adjust. Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 1/29 (3%) Query: 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTV 32 KK+AI GA G GLT A + GYEVT+ Sbjct: 155 KKVAIIGA-GPAGLTCAADLAKMGYEVTI 182 >1I3M-A nrPDB Length = 348 Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust. Identities = 35/142 (24%), Positives = 56/142 (39%), Gaps = 24/142 (16%) Query: 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVL------VRDSSRLPSEGPRPAHVVVGDVLQ 57 +K+ + G G G T+ + ++AGY V+ R LP E R + G ++ Sbjct: 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLP-ESLRRVQELTGRSVE 61 Query: 58 AADVDKTVAGQ----------DAVIVLLGTR-------NDLSPTTVMSEGARNIVAAMKA 100 ++D G AVI G + L V G ++ MKA Sbjct: 62 FEEMDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQLLEIMKA 121 Query: 101 HGVDKVVACTSAFLLWDPTKVP 122 HGV +V +SA + +P +P Sbjct: 122 HGVKNLVFSSSATVYGNPQYLP 143 >5NMX-A nrPDB Length = 425 Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust. Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%) Query: 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVR 35 ++++A+ GA G +GLT QAG+EV V R Sbjct: 1 MRRVAVLGA-GPSGLTAARYLKQAGFEVMVFER 32 >1UDA-A nrPDB Length = 338 Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust. Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 16/134 (11%) Query: 5 KIAIFGATGQTGLTTLAQAVQAGYEVTVL--VRDSSR-----LPSEGPRPAHVVVGDVLQ 57 ++ + G +G G T Q +Q G++V +L + +S R + G + V GD+ Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61 Query: 58 AADVDKTVAGQ--DAVIVLLGTR-------NDLSPTTVMSEGARNIVAAMKAHGVDKVVA 108 A + + + D VI G + L G +++AM+A V + Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF 121 Query: 109 CTSAFLLWDPTKVP 122 +SA + D K+P Sbjct: 122 SSSATVYGDNPKIP 135 >5F56-A nrPDB Length = 705 Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust. Identities = 14/39 (35%), Positives = 23/39 (58%) Query: 61 VDKTVAGQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMK 99 V + + G+D LL +L+P + E AR+IVAA++ Sbjct: 31 VAQVLCGRDLRTELLALPLELTPNPALREAARHIVAAVR 69 >4B03-A nrPDB Length = 495 Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 6/58 (10%) Query: 137 KVLRESGLKYVAVMPPHIGDQPLTG------AYTVTLDGRGPSRVISKHDLGHFMLRC 188 K+++ LKY ++ H GDQ G T T+ + P+ I D G L C Sbjct: 128 KIVQYENLKYSVIVTVHTGDQHQVGNETTEHGTTATITPQAPTSEIQLTDYGALTLDC 185 >1XTP-A nrPDB Length = 254 Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust. Identities = 8/21 (38%), Positives = 14/21 (66%) Query: 89 EGARNIVAAMKAHGVDKVVAC 109 EG+RN +A++ HG + + C Sbjct: 80 EGSRNFIASLPGHGTSRALDC 100 >4GSX-A nrPDB Length = 427 Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 6/58 (10%) Query: 137 KVLRESGLKYVAVMPPHIGDQPLTGAYTV------TLDGRGPSRVISKHDLGHFMLRC 188 K+++ LKY ++ H GDQ G T T+ + P+ I D G L C Sbjct: 144 KIVQYENLKYSVIVTVHTGDQHQVGNETTEHGTIATITPQAPTSEIQLTDYGALTLDC 201 >6GPK-A nrPDB Length = 373 Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust. Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 15/95 (15%) Query: 8 IFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPS-------EGPRPAHVVVGDVLQAAD 60 I G TGQ G ++ GYEV +VR SS + + P+ AH+ L D Sbjct: 29 ITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQ-AHIEGNMKLHYGD 87 Query: 61 VDKTVAGQDAVIVLLGTRNDLSPTTVMSEGARNIV 95 + + L+ N++ PT + + GA++ V Sbjct: 88 LTDSTC-------LVKIINEVKPTEIYNLGAQSHV 115 >1QYC-A nrPDB Length = 308 Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust. Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 17/110 (15%) Query: 5 KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSR---------LPSEGPRPAHVVVGDV 55 +I + GATG G ++ G+ +LVR+S+ L S A++V G + Sbjct: 6 RILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSI 65 Query: 56 LQAADVDKTVAGQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDK 105 A + + V D VI +G ++ E NI+ A+K G K Sbjct: 66 DDHASLVEAVKNVDVVISTVG--------SLQIESQVNIIKAIKEVGTVK 107 >4ZP1-A nrPDB Length = 568 Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 1/58 (1%) Query: 27 GYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTRNDLSPT 84 G V + S P E P G+V V+KT+ DAVI L ND S T Sbjct: 237 GGAVATMAAAKSFFPEENPHYIGTSWGEV-SYPGVEKTMKEADAVIALAPVFNDYSTT 293 >2Q4B-A nrPDB Length = 253 Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 5/90 (5%) Query: 6 IAIFGATGQTGLTTLAQAVQAGYEVTV---LVRDSSRLPSEGPRPAHVVVGDVLQAADVD 62 + + GA+G+TG + + ++ G + V LVR + G A V +GD+ A ++ Sbjct: 7 VLVTGASGRTG-QIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGE-ADVFIGDITDADSIN 64 Query: 63 KTVAGQDAVIVLLGTRNDLSPTTVMSEGAR 92 G DA+++L + P ++G R Sbjct: 65 PAFQGIDALVILTSAVPKMKPGFDPTKGGR 94 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 1HE4-A nrPDB 425 e-120 Sequences not found previously or not previously below threshold: 2ZCU-A nrPDB 40 8e-04 4NQY-A nrPDB 33 0.12 5VJ7-A nrPDB 32 0.28 5JFC-L nrPDB 32 0.28 6GCS-E nrPDB 30 0.52 1QYC-A nrPDB 30 0.53 2BKA-A nrPDB 30 0.71 4B03-A nrPDB 30 0.98 1I3M-A nrPDB 30 0.99 2Q4B-A nrPDB 29 1.3 5F56-A nrPDB 29 1.5 4GSX-A nrPDB 29 1.7 5NMX-A nrPDB 28 1.9 1UDA-A nrPDB 28 3.1 6GRC-A nrPDB 27 4.8 5CO8-C nrPDB 27 4.8 1XTP-A nrPDB 27 5.7 3K6F-A nrPDB 27 6.0 3K5R-A nrPDB 27 6.0 4G65-A nrPDB 27 6.5 2GFH-A nrPDB 27 6.9 4ZP1-A nrPDB 27 7.1 4LIS-A nrPDB 27 7.7 6GPK-A nrPDB 27 7.9 4D3S-A nrPDB 27 8.7 1T5O-A nrPDB 26 9.2 >1HE4-A nrPDB Length = 206 Score = 425 bits (1092), Expect = e-120, Method: Composition-based stats. Identities = 206/206 (100%), Positives = 206/206 (100%) Query: 1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAAD 60 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAAD Sbjct: 1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAAD 60 Query: 61 VDKTVAGQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTK 120 VDKTVAGQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTK Sbjct: 61 VDKTVAGQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTK 120 Query: 121 VPPRLQAVTDDHIRMHKVLRESGLKYVAVMPPHIGDQPLTGAYTVTLDGRGPSRVISKHD 180 VPPRLQAVTDDHIRMHKVLRESGLKYVAVMPPHIGDQPLTGAYTVTLDGRGPSRVISKHD Sbjct: 121 VPPRLQAVTDDHIRMHKVLRESGLKYVAVMPPHIGDQPLTGAYTVTLDGRGPSRVISKHD 180 Query: 181 LGHFMLRCLTTDEYDGHSTYPSHQYQ 206 LGHFMLRCLTTDEYDGHSTYPSHQYQ Sbjct: 181 LGHFMLRCLTTDEYDGHSTYPSHQYQ 206 >2ZCU-A nrPDB Length = 286 Score = 39.7 bits (91), Expect = 8e-04, Method: Composition-based stats. Identities = 40/144 (27%), Positives = 69/144 (47%), Gaps = 16/144 (11%) Query: 6 IAIFGATGQTG---LTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVD 62 IAI GATGQ G + +L + V A ++ +VR+ ++ + + V D A + Sbjct: 2 IAITGATGQLGHYVIESLMKTVPAS-QIVAIVRNPAKAQALAAQGITVRQADYGDEAALT 60 Query: 63 KTVAGQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTKVP 122 + G + ++++ S + RN++ A KA GV K +A TS L D + + Sbjct: 61 SALQGVEKLLLI-----SSSEVGQRAPQHRNVINAAKAAGV-KFIAYTS-LLHADTSPL- 112 Query: 123 PRLQAVTDDHIRMHKVLRESGLKY 146 + D+HI K+L +SG+ Y Sbjct: 113 ----GLADEHIETEKMLADSGIVY 132 >4NQY-A nrPDB Length = 443 Score = 32.7 bits (73), Expect = 0.12, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 95 VAAMKAHGVDKVVACTSAFLLWDPTKVPPRLQAVTDDHIRMHKVLRESGLKY 146 V +K +G++KV +L+D +VP ++HI M K ++E G+KY Sbjct: 62 VNTLKEYGIEKVWNPEKIVILFD-HQVPADSIKAAENHILMRKFVKEQGIKY 112 >5VJ7-A nrPDB Length = 476 Score = 31.6 bits (70), Expect = 0.28, Method: Composition-based stats. Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 1/29 (3%) Query: 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTV 32 KK+AI GA G GLT A + GYEVT+ Sbjct: 155 KKVAIIGA-GPAGLTCAADLAKMGYEVTI 182 >5JFC-L nrPDB Length = 474 Score = 31.6 bits (70), Expect = 0.28, Method: Composition-based stats. Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 1/29 (3%) Query: 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTV 32 KK+AI GA G GLT A + GYEVT+ Sbjct: 155 KKVAIIGA-GPAGLTCAADLAKMGYEVTI 182 >6GCS-E nrPDB Length = 375 Score = 30.4 bits (67), Expect = 0.52, Method: Composition-based stats. Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 10/114 (8%) Query: 8 IFGATGQTGLTTLAQAVQAGYEVTVLVRDS---SRLPSEGPRPA-HVVVGDVLQAADVDK 63 +FGA G G A+ + G V V R+ L G + + D+ +D+ Sbjct: 58 VFGANGFLGSYLTAKLAKHGTTVVVPYREEMAKRHLKVTGDLGVVNFLEMDLRNLESIDE 117 Query: 64 TVAGQDAVIVLLG----TRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAF 113 V D V+ L+G T+N + V EGAR I A+K H + + + SAF Sbjct: 118 AVRHSDIVVNLIGREYETKN-FNYYDVHVEGARRIAEAVKKHNIARYIH-VSAF 169 >1QYC-A nrPDB Length = 308 Score = 30.4 bits (67), Expect = 0.53, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 17/110 (15%) Query: 5 KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSR---------LPSEGPRPAHVVVGDV 55 +I + GATG G ++ G+ +LVR+S+ L S A++V G + Sbjct: 6 RILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSI 65 Query: 56 LQAADVDKTVAGQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDK 105 A + + V D VI +G ++ E NI+ A+K G K Sbjct: 66 DDHASLVEAVKNVDVVISTVG--------SLQIESQVNIIKAIKEVGTVK 107 >2BKA-A nrPDB Length = 242 Score = 30.0 bits (66), Expect = 0.71, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%) Query: 1 MAVKKIAIFGATGQTGLTTLAQAVQAGY--EVTVLVRDSSRLPSEGPRPAHVVVGDVLQA 58 M K + I GA+G+TG L + ++ G +VT++ R E + + V D + Sbjct: 16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKL 75 Query: 59 ADVDKTVAGQDAVIVLLGT 77 D G D LGT Sbjct: 76 DDYASAFQGHDVGFCCLGT 94 >4B03-A nrPDB Length = 495 Score = 29.6 bits (65), Expect = 0.98, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 6/58 (10%) Query: 137 KVLRESGLKYVAVMPPHIGDQPLTG------AYTVTLDGRGPSRVISKHDLGHFMLRC 188 K+++ LKY ++ H GDQ G T T+ + P+ I D G L C Sbjct: 128 KIVQYENLKYSVIVTVHTGDQHQVGNETTEHGTTATITPQAPTSEIQLTDYGALTLDC 185 >1I3M-A nrPDB Length = 348 Score = 29.6 bits (65), Expect = 0.99, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 56/142 (39%), Gaps = 24/142 (16%) Query: 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVL------VRDSSRLPSEGPRPAHVVVGDVLQ 57 +K+ + G G G T+ + ++AGY V+ R LP E R + G ++ Sbjct: 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLP-ESLRRVQELTGRSVE 61 Query: 58 AADVDKTVAGQ----------DAVIVLLG-------TRNDLSPTTVMSEGARNIVAAMKA 100 ++D G AVI G + L V G ++ MKA Sbjct: 62 FEEMDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQLLEIMKA 121 Query: 101 HGVDKVVACTSAFLLWDPTKVP 122 HGV +V +SA + +P +P Sbjct: 122 HGVKNLVFSSSATVYGNPQYLP 143 >2Q4B-A nrPDB Length = 253 Score = 29.3 bits (64), Expect = 1.3, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 5/90 (5%) Query: 6 IAIFGATGQTGLTTLAQAVQAGYEVTV---LVRDSSRLPSEGPRPAHVVVGDVLQAADVD 62 + + GA+G+TG + + ++ G + V LVR + G A V +GD+ A ++ Sbjct: 7 VLVTGASGRTG-QIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGE-ADVFIGDITDADSIN 64 Query: 63 KTVAGQDAVIVLLGTRNDLSPTTVMSEGAR 92 G DA+++L + P ++G R Sbjct: 65 PAFQGIDALVILTSAVPKMKPGFDPTKGGR 94 >5F56-A nrPDB Length = 705 Score = 28.9 bits (63), Expect = 1.5, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 13/67 (19%) Query: 46 RPAHVVVG-----DVLQAA--------DVDKTVAGQDAVIVLLGTRNDLSPTTVMSEGAR 92 RPAH ++ D L A V + + G+D LL +L+P + E AR Sbjct: 3 RPAHWLLAPPASRDALLATMREWQVSPPVAQVLCGRDLRTELLALPLELTPNPALREAAR 62 Query: 93 NIVAAMK 99 +IVAA++ Sbjct: 63 HIVAAVR 69 >4GSX-A nrPDB Length = 427 Score = 28.9 bits (63), Expect = 1.7, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 6/58 (10%) Query: 137 KVLRESGLKYVAVMPPHIGDQPLTGAYTV------TLDGRGPSRVISKHDLGHFMLRC 188 K+++ LKY ++ H GDQ G T T+ + P+ I D G L C Sbjct: 144 KIVQYENLKYSVIVTVHTGDQHQVGNETTEHGTIATITPQAPTSEIQLTDYGALTLDC 201 >5NMX-A nrPDB Length = 425 Score = 28.5 bits (62), Expect = 1.9, Method: Composition-based stats. Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%) Query: 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVR 35 ++++A+ GA G +GLT QAG+EV V R Sbjct: 1 MRRVAVLGA-GPSGLTAARYLKQAGFEVMVFER 32 >1UDA-A nrPDB Length = 338 Score = 28.1 bits (61), Expect = 3.1, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 16/134 (11%) Query: 5 KIAIFGATGQTGLTTLAQAVQAGYEVTVL--VRDSSR--LP---SEGPRPAHVVVGDVLQ 57 ++ + G +G G T Q +Q G++V +L + +S R LP G + V GD+ Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61 Query: 58 AADVDKTVAGQ--DAVIVLLG-------TRNDLSPTTVMSEGARNIVAAMKAHGVDKVVA 108 A + + + D VI G + L G +++AM+A V + Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF 121 Query: 109 CTSAFLLWDPTKVP 122 +SA + D K+P Sbjct: 122 SSSATVYGDNPKIP 135 >6GRC-A nrPDB Length = 530 Score = 27.3 bits (59), Expect = 4.8, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 31/69 (44%) Query: 32 VLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTRNDLSPTTVMSEGA 91 V +RD S S+G P HV + D + A+ + + V+V L + D P + G Sbjct: 151 VTLRDWSSEGSKGGPPTHVTLHDAKKIAEGPSGLDREGMVLVALMSGGDYLPDGIPGCGI 210 Query: 92 RNIVAAMKA 100 + A KA Sbjct: 211 KVACQAAKA 219 >5CO8-C nrPDB Length = 464 Score = 27.3 bits (59), Expect = 4.8, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 31/69 (44%) Query: 32 VLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTRNDLSPTTVMSEGA 91 V +RD S S+G P HV + D + A+ + + V+V L + D P + G Sbjct: 150 VTLRDWSSEGSKGGPPTHVTLHDAKKIAEGPSGLDREGMVLVALMSGGDYLPDGIPGCGI 209 Query: 92 RNIVAAMKA 100 + A KA Sbjct: 210 KVACQAAKA 218 >1XTP-A nrPDB Length = 254 Score = 27.0 bits (58), Expect = 5.7, Method: Composition-based stats. Identities = 8/21 (38%), Positives = 14/21 (66%) Query: 89 EGARNIVAAMKAHGVDKVVAC 109 EG+RN +A++ HG + + C Sbjct: 80 EGSRNFIASLPGHGTSRALDC 100 >3K6F-A nrPDB Length = 100 Score = 27.0 bits (58), Expect = 6.0, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Query: 12 TGQTGLT-TLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGD 54 TG +T TL + A Y++ V D+S EGP P V+V D Sbjct: 57 TGSVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVID 100 >3K5R-A nrPDB Length = 218 Score = 27.0 bits (58), Expect = 6.0, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Query: 12 TGQTGLT-TLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGD 54 TG +T TL + A Y++ V D+S EGP P V+V D Sbjct: 57 TGSVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVID 100 >4G65-A nrPDB Length = 461 Score = 27.0 bits (58), Expect = 6.5, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 1/76 (1%) Query: 5 KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKT 64 KI I GA GQ G T V ++T++ +D RL + VV DV Sbjct: 5 KIIILGA-GQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHE 63 Query: 65 VAGQDAVIVLLGTRND 80 QDA +++ T D Sbjct: 64 AGAQDADMLVAVTNTD 79 >2GFH-A nrPDB Length = 260 Score = 27.0 bits (58), Expect = 6.9, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%) Query: 13 GQTGLTTLAQAVQAGYEVTVLVRDSSRLP-SEGPRPAHVVVGDVLQ 57 G T T + + AG + TV + S R+P + P P H +V VL+ Sbjct: 200 GDTLETDIQGGLNAGLKATVWINKSGRVPLTSSPMP-HYMVSSVLE 244 >4ZP1-A nrPDB Length = 568 Score = 26.6 bits (57), Expect = 7.1, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 1/58 (1%) Query: 27 GYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTRNDLSPT 84 G V + S P E P G+V V+KT+ DAVI L ND S T Sbjct: 237 GGAVATMAAAKSFFPEENPHYIGTSWGEV-SYPGVEKTMKEADAVIALAPVFNDYSTT 293 >4LIS-A nrPDB Length = 371 Score = 26.6 bits (57), Expect = 7.7, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 52/139 (37%), Gaps = 17/139 (12%) Query: 1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTV---LVRDSS----RLPSEGPRPAHVVVG 53 M + + G TG G T ++AGY+V V L S+ R+ + A Sbjct: 1 MPSGSVLVTGGTGYIGSFTTLALLEAGYKVVVADNLYNSSAEALNRIELISGKKAEFAQL 60 Query: 54 DVLQAADVDKTVAGQ---DAVIVLLGTR-------NDLSPTTVMSEGARNIVAAMKAHGV 103 DV A DK D+VI + L V G ++ +M H V Sbjct: 61 DVTDEAAFDKVFEAHPDIDSVIHFAALKAVGESGEKPLDYYHVNVYGTICLLRSMVRHNV 120 Query: 104 DKVVACTSAFLLWDPTKVP 122 +V +SA + D T+ P Sbjct: 121 TNIVFSSSATVYGDATRFP 139 >6GPK-A nrPDB Length = 373 Score = 26.6 bits (57), Expect = 7.9, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 15/95 (15%) Query: 8 IFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPS-------EGPRPAHVVVGDVLQAAD 60 I G TGQ G ++ GYEV +VR SS + + P+ AH+ L D Sbjct: 29 ITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQ-AHIEGNMKLHYGD 87 Query: 61 VDKTVAGQDAVIVLLGTRNDLSPTTVMSEGARNIV 95 + + L+ N++ PT + + GA++ V Sbjct: 88 LTDSTC-------LVKIINEVKPTEIYNLGAQSHV 115 >4D3S-A nrPDB Length = 293 Score = 26.6 bits (57), Expect = 8.7, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 9/85 (10%) Query: 16 GLTTLAQA-----VQAGYEVTVLVRDSSRLPSEGPRPAHVV--VGDVLQAADVDKTVAGQ 68 GL + QA ++AGYE+TV R ++ + R A V + L+A + Sbjct: 15 GLGPMGQAMAGALLEAGYELTVWNRTKAKAEALAERGAAVADSPAEALRAGGPVLLSLTE 74 Query: 69 DAVI--VLLGTRNDLSPTTVMSEGA 91 AV+ VL G +DL T+++ G+ Sbjct: 75 HAVMYRVLEGAESDLKGRTILNLGS 99 >1T5O-A nrPDB Length = 351 Score = 26.2 bits (56), Expect = 9.2, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 49/120 (40%), Gaps = 25/120 (20%) Query: 15 TGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPR---------------PAHVVVGDVLQAA 59 T L + AV+ G E+ V+ ++ L ++G R +VG V+Q Sbjct: 166 TALGVVRSAVEQGKEIRVIACETRPL-NQGSRLTCWELMEDGIDVTLITDSMVGIVMQKG 224 Query: 60 DVDKTVAGQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPT 119 VDK + G D IV N + TV ++VA K H + VA A W+ T Sbjct: 225 MVDKVIVGADR-IVRDAVFNKIGTYTV------SVVA--KHHNIPFYVAAPKATFDWERT 275 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.319 0.134 0.393 Lambda K H 0.267 0.0411 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,205,964 Number of Sequences: 36641 Number of extensions: 318336 Number of successful extensions: 1039 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 47 Number of HSP's that attempted gapping in prelim test: 1025 Number of HSP's gapped (non-prelim): 59 length of query: 206 length of database: 10,336,785 effective HSP length: 92 effective length of query: 114 effective length of database: 6,965,813 effective search space: 794102682 effective search space used: 794102682 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 57 (26.6 bits)