BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P29717 (438 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 2PBO-A nrPDB 825 0.0 1H4P-A nrPDB 494 e-140 1CEO-A nrPDB 62 6e-10 1VJZ-A nrPDB 40 0.002 3NCO-A nrPDB 38 0.009 4W7V-A nrPDB 37 0.013 3W0K-A nrPDB 35 0.049 1V3M-A nrPDB 35 0.055 1A47-A nrPDB 33 0.31 2VRK-A nrPDB 31 0.87 4M24-A nrPDB 31 1.0 4OEP-A nrPDB 30 1.7 5IG4-A nrPDB 30 2.8 1IYN-A nrPDB 30 2.9 2OYK-A nrPDB 30 2.9 5H4R-A nrPDB 29 3.4 3AZS-A nrPDB 29 4.6 5E0C-A nrPDB 29 4.7 1UR0-A nrPDB 28 5.3 4JIE-A nrPDB 28 8.6 >2PBO-A nrPDB Length = 400 Score = 825 bits (2131), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/400 (99%), Positives = 399/400 (99%) Query: 39 GGGHNVAWDYDNNVIRGVNLGGWFVLEPYMTPSLFEPFQNGNDQSGVPVDEYHWTQTLGK 98 GGGHNVAWDYDNNVIRGVNLGGWFVL+PYMTPSLFEPFQNGNDQSGVPVDEYHWTQTLGK Sbjct: 1 GGGHNVAWDYDNNVIRGVNLGGWFVLQPYMTPSLFEPFQNGNDQSGVPVDEYHWTQTLGK 60 Query: 99 EAASRILQKHWSTWITEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQVQYLEKAL 158 EAA RILQKHWSTWITEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQVQYLEKAL Sbjct: 61 EAALRILQKHWSTWITEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQVQYLEKAL 120 Query: 159 GWARKNNIRVWIDLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEY 218 GWARKNNIRVWIDLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEY Sbjct: 121 GWARKNNIRVWIDLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEY 180 Query: 219 SDVVIGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAFQVFGYWNNFLT 278 SDVVIGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAFQVFGYWNNFLT Sbjct: 181 SDVVIGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAFQVFGYWNNFLT 240 Query: 279 VAEGQWNVVVDHHHYQVFSGGELSRNINDHISVACNWGWDAKKESHWNVAGEWSAALTDC 338 VAEGQWNVVVDHHHYQVFSGGELSRNINDHISVACNWGWDAKKESHWNVAGEWSAALTDC Sbjct: 241 VAEGQWNVVVDHHHYQVFSGGELSRNINDHISVACNWGWDAKKESHWNVAGEWSAALTDC 300 Query: 339 AKWLNGVNRGARYEGAYDNAPYIGSCQPMLDISQWSDEHKTDTRRYIEAQLDAFEYTGGW 398 AKWLNGVNRGARYEGAYDNAPYIGSCQP+LDISQWSDEHKTDTRRYIEAQLDAFEYTGGW Sbjct: 301 AKWLNGVNRGARYEGAYDNAPYIGSCQPLLDISQWSDEHKTDTRRYIEAQLDAFEYTGGW 360 Query: 399 VFWSWKTENAPEWSFQTLTYNGLFPQPVTDRQFPNQCGFH 438 VFWSWKTENAPEWSFQTLTYNGLFPQPVTDRQFPNQCGFH Sbjct: 361 VFWSWKTENAPEWSFQTLTYNGLFPQPVTDRQFPNQCGFH 400 >1H4P-A nrPDB Length = 408 Score = 494 bits (1272), Expect = e-140, Method: Compositional matrix adjust. Identities = 241/403 (59%), Positives = 298/403 (73%), Gaps = 12/403 (2%) Query: 46 WDYDNNV----IRGVNLGGWFVLEPYMTPSLFEPFQNGND-QSGVPVDEYHWTQTLGKEA 100 +DYD+ IRGVN+GGW +LEPY+TPSLFE F+ +D G+PVDEYH+ Q LGK+ Sbjct: 2 YDYDHGSLGEPIRGVNIGGWLLLEPYITPSLFEAFRTNDDNDEGIPVDEYHFCQYLGKDL 61 Query: 101 ASRILQKHWSTWITEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQG-QVQYLEKALG 159 A LQ HWST+ EQDF I++ G N VRIPIGYWAFQ+LD+DPYV G Q YL++A+G Sbjct: 62 AKSRLQSHWSTFYQEQDFANIASQGFNLVRIPIGYWAFQILDDDPYVSGLQESYLDQAIG 121 Query: 160 WARKNNIRVWIDLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEYS 219 WAR N+++VW+DLHGA GSQNGFDNSGLRDSY F N VT+NVLN I KKY EY Sbjct: 122 WARNNSLKVWVDLHGAAGSQNGFDNSGLRDSYKFLEDSNLAVTINVLNYILKKYSAEEYL 181 Query: 220 DVVIGIELLNEPLGPVLNMDKLKQFFLD-GYNSLR-QTGSVTPVIIHDAFQVFGYWNNFL 277 D+VIGIEL+NEPLGPVL+MDK+K +L Y LR S +IIHDAFQ + YW++F+ Sbjct: 182 DIVIGIELINEPLGPVLDMDKMKNDYLAPAYEYLRNNIKSDQVIIIHDAFQPYNYWDDFM 241 Query: 278 TVAEGQWNVVVDHHHYQVFSGGELSRNINDHISVACNWGWDAKKESHWNVAGEWSAALTD 337 T +G W V +DHHHYQVF+ +L R+I++HI VAC WG ESHW V GE++AALTD Sbjct: 242 TENDGYWGVTIDHHHYQVFASDQLERSIDEHIKVACEWGTGVLNESHWIVCGEFAAALTD 301 Query: 338 CAKWLNGVNRGARYEGAYDN----APYIGSCQPMLDISQWSDEHKTDTRRYIEAQLDAFE 393 C KWLN V GARY+G++ N + YIGSC DI+ WSDE K +TRRY+EAQLDAFE Sbjct: 302 CIKWLNSVGFGARYDGSWVNGDQTSSYIGSCANNDDIAYWSDERKENTRRYVEAQLDAFE 361 Query: 394 YTGGWVFWSWKTENAPEWSFQTLTYNGLFPQPVTDRQFPNQCG 436 GGW+ W +KTE++ EW Q L +NGLFPQP+TDR++PNQCG Sbjct: 362 MRGGWIIWCYKTESSLEWDAQRLMFNGLFPQPLTDRKYPNQCG 404 >1CEO-A nrPDB Length = 343 Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 79/156 (50%), Gaps = 12/156 (7%) Query: 106 QKHWSTWITEQDFKQISNLGLNFVRIPIGYWAFQLLDN-DPYVQGQVQYLEKALGWARKN 164 ++H+ T+ITE+D + I+ G + VR+P Y + DN Y + + Y+++ L W +K Sbjct: 22 KEHFDTFITEKDIETIAEAGFDHVRLPFDYPIIESDDNVGEYKEDGLSYIDRCLEWCKKY 81 Query: 165 NIRVWIDLHGAPGSQ-NGFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEYSDVVI 223 N+ + +D+H APG + F S L F++ + + +++ + K+Y I Sbjct: 82 NLGLVLDMHHAPGYRFQDFKTSTL-----FEDPNQQKRFVDIWRFLAKRYINEREH---I 133 Query: 224 GIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVT 259 ELLN+ + P + + + L+ ++R+ S Sbjct: 134 AFELLNQVVEP--DSTRWNKLMLECIKAIREIDSTM 167 >1VJZ-A nrPDB Length = 341 Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/155 (22%), Positives = 68/155 (43%), Gaps = 12/155 (7%) Query: 115 EQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQ--VQYLEKALGWARKNNIRVWIDL 172 E+DF ++ NFVRIP+ + + N P++ + + +++ + W K I + I L Sbjct: 39 EEDFLWMAQWDFNFVRIPMCHLLWSDRGN-PFIIREDFFEKIDRVIFWGEKYGIHICISL 97 Query: 173 HGAPGSQNGFDNSGLRDSYNFQNGDNTQ-VTLNVLNTIFKKYGGNEYSDVVIGIELLNEP 231 H APG N + + N + Q ++ + I ++Y G S + L+NEP Sbjct: 98 HRAPGYSV---NKEVEEKTNLWKDETAQEAFIHHWSFIARRYKG--ISSTHLSFNLINEP 152 Query: 232 LGP---VLNMDKLKQFFLDGYNSLRQTGSVTPVII 263 P +++++ +R+ +II Sbjct: 153 PFPDPQIMSVEDHNSLIKRTITEIRKIDPERLIII 187 >3NCO-A nrPDB Length = 320 Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust. Identities = 53/241 (21%), Positives = 97/241 (40%), Gaps = 38/241 (15%) Query: 105 LQKHWSTWITEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQ--VQYLEKALGWAR 162 ++ W +I ++ FK I G + VRIPI W+ + + PY + + ++ + A Sbjct: 34 VEGSWGVYIEDEYFKIIKERGFDSVRIPIR-WSAHISEKYPYEIDKFFLDRVKHVVDVAL 92 Query: 163 KNNIRVWIDLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGG--NEYSD 220 KN++ V I+ H D G VL I+K+ +Y D Sbjct: 93 KNDLVVIINCHHFEELYQAPDKYG-----------------PVLVEIWKQVAQAFKDYPD 135 Query: 221 VVIGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAFQVFGYWNNFLTVA 280 + E+ NEP L K + + +R+T VII W+N+ V Sbjct: 136 KLF-FEIFNEP-AQNLTPTKWNELYPKVLGEIRKTNPSRIVIID-----VPNWSNYSYVR 188 Query: 281 EGQW----NVVVDHHHYQVFSGGELSRN-INDHISVACNW---GWDAKK-ESHWNVAGEW 331 E + N++V H+Y+ F+ ++ + + W W+ ++ +H+ EW Sbjct: 189 ELKLVDDKNIIVSFHYYEPFNFTHQGAEWVSPTLPIGVKWEGKDWEVEQIRNHFKYVSEW 248 Query: 332 S 332 + Sbjct: 249 A 249 >4W7V-A nrPDB Length = 332 Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust. Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 13/123 (10%) Query: 111 TWITEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQVQYLEKALGWARKNNIRVWI 170 T+ DF + G+N +R+P + Q N P Q Q+ ++K+L A+ N + + Sbjct: 48 TYPAASDFSYFAGKGMNTIRLPFLWERVQPELNGPLDQAQLGLIKKSLEAAKANKQYLIL 107 Query: 171 DLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEYSDVVIGIELLNE 230 DLH +Y+ + + V L ++++ D + L+NE Sbjct: 108 DLHN-------------YATYSGKRIGTSDVPAGALADLWRRLALEFKDDKAVIFGLMNE 154 Query: 231 PLG 233 P G Sbjct: 155 PNG 157 >3W0K-A nrPDB Length = 330 Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 17/118 (14%) Query: 121 ISNLGLNFVRIPIGY--WA--FQLLDNDPYVQGQVQYLEKALGWARKNNIRVWIDLHGAP 176 ++ G NFVRIP+ Y W F + D V +Y++ L NI + ++LH AP Sbjct: 31 LAETGFNFVRIPVDYRFWTRNFDYFNPDKKV---FEYIDLYLRECSARNIHMCLNLHRAP 87 Query: 177 G---SQNGFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEYSDVVIGIELLNEP 231 G ++N + L Q+G Q L K+Y G S + +L+NEP Sbjct: 88 GYCINRNDIERDNLWLDKRAQDGFVYQWEL-----FAKRYKG--VSSKFLSFDLVNEP 138 >1V3M-A nrPDB Length = 686 Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 6/95 (6%) Query: 134 GYWAFQLLDNDPYVQGQVQYLEKALGWARKNNIRVWIDL---HGAPGSQNGFDNSGLRDS 190 GYWA +P G +Q + + A +NI+V ID H +P S + D S + Sbjct: 99 GYWARDFKKTNP-AYGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSD--DPSFAENG 155 Query: 191 YNFQNGDNTQVTLNVLNTIFKKYGGNEYSDVVIGI 225 + NG+ N +F YGG ++S + GI Sbjct: 156 RLYDNGNLLGGYTNDTQNLFHHYGGTDFSTIENGI 190 >1A47-A nrPDB Length = 683 Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 6/95 (6%) Query: 134 GYWAFQLLDNDPYVQGQVQYLEKALGWARKNNIRVWIDL---HGAPGSQNGFDNSGLRDS 190 GYWA +PY G + + A +NI+V ID H +P S+ D + + Sbjct: 100 GYWARDFKRTNPYF-GSFTDFQNLINTAHAHNIKVIIDFAPNHTSPASET--DPTYAENG 156 Query: 191 YNFQNGDNTQVTLNVLNTIFKKYGGNEYSDVVIGI 225 + NG N N F YGG ++S GI Sbjct: 157 RLYDNGTLLGGYTNDTNGYFHHYGGTDFSSYEDGI 191 >2VRK-A nrPDB Length = 496 Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 12/69 (17%) Query: 84 GVPVDEYHWTQTLG-KEAASRILQKHWSTWITEQDFKQISNLGLNFVRIPIGYWAFQLLD 142 G DEYHW +G +E R++ HW I F + L +LL Sbjct: 73 GCFADEYHWKDGVGPREKRKRMVNTHWGGVIENNHFGTHEFMML-----------CELLG 121 Query: 143 NDPYVQGQV 151 +PY+ G V Sbjct: 122 CEPYISGNV 130 >4M24-A nrPDB Length = 321 Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust. Identities = 38/182 (20%), Positives = 74/182 (40%), Gaps = 21/182 (11%) Query: 118 FKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQVQYLEKALGWARKNNIRVWIDLHGAPG 177 F+ S G++ VR P+ + Q N ++ L A++N+I+V +D+H Sbjct: 35 FEYWSEQGIHTVRFPLKWERLQPSLNAELDDVYASLVDDMLDQAKENDIKVILDVH---- 90 Query: 178 SQNGFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEYSDVVIGIELLNEPLGPVLN 237 + + R +++ I K++ G+ D + +++NEP G + Sbjct: 91 -----NYARYRKKVIGTEDVPVSAYQDLMERIAKRWQGH---DALFAYDIMNEPYG---S 139 Query: 238 MDKL-KQFFLDGYNSLRQTGSVTPVIIH-----DAFQVFGYWNNFLTVAEGQWNVVVDHH 291 DKL G + +R+ P++I A + Y + L + + N+V H Sbjct: 140 ADKLWPAAAQAGIDGVRKYDKKRPLLIEGASWSSAARWPRYADELLKLKDPADNMVFSAH 199 Query: 292 HY 293 Y Sbjct: 200 VY 201 >4OEP-A nrPDB Length = 107 Score = 30.4 bits (67), Expect = 1.7, Method: Composition-based stats. Identities = 16/37 (43%), Positives = 23/37 (62%) Query: 170 IDLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVL 206 + LH APG G SG RD+ +FQ+G+ + V +VL Sbjct: 11 VTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVL 47 >5IG4-A nrPDB Length = 145 Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust. Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 5/49 (10%) Query: 63 VLEPYMTPSLFEPFQNGNDQSGVPVDEYHWTQTLGKEAA---SRILQKH 108 +++P++T FEPF NGN G+ ++++ TL K + + IL H Sbjct: 43 LVDPHVT--CFEPFSNGNLVEGLEFHKFYFDNTLSKRSVPINTTILSPH 89 >1IYN-A nrPDB Length = 295 Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 4/64 (6%) Query: 179 QNGFDNSGLRDSYNFQNGDNTQV--TLNVLNTIFKKYGGNEYSDV--VIGIELLNEPLGP 234 Q G N LR ++G N + LN+L I KY G Y+D+ + + E GP Sbjct: 48 QRGGANGSLRFDVELKHGANAGLVNALNLLKPIKDKYSGVTYADLFQLASATAIEEAGGP 107 Query: 235 VLNM 238 + M Sbjct: 108 KIPM 111 >2OYK-A nrPDB Length = 481 Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%) Query: 114 TEQDF-KQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQVQYLEKALGWARKNNIRVWIDL 172 TE D ++ +++G NFVR I + + + Y Q + +E +GW + +V +D+ Sbjct: 67 TEADLAREYADMGTNFVRFLISWRSVEPAPGV-YDQQYLDRVEDRVGWYAERGYKVMLDM 125 Query: 173 H 173 H Sbjct: 126 H 126 >5H4R-A nrPDB Length = 396 Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust. Identities = 33/163 (20%), Positives = 66/163 (40%), Gaps = 35/163 (21%) Query: 114 TEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQVQYLEKALGWARKNNIRVWIDLH 173 T+Q + G N +RIP+ + N + + +++ + +A KN + V I++H Sbjct: 82 TKQMIDTVKKAGFNTIRIPVSWHNHVTGSNFTISKRWLDRVQQVVDYAMKNKMYVIINIH 141 Query: 174 GAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGG--NEYSDVVIGIELLNEP 231 + Y + N + Q ++ + +I+ + Y+D +I E +N+P Sbjct: 142 -----------HDIMPGYYYPNSQHLQTSIKYVKSIWTQVATRFKNYNDHLI-FEAVNQP 189 Query: 232 ------------------LGPVLNMDKLKQFFLDGYNSLRQTG 256 V ++KL Q F+D ++R TG Sbjct: 190 RLTGSRFEWWLDMNNPECRDAVEAINKLNQVFVD---TVRSTG 229 >3AZS-A nrPDB Length = 317 Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust. Identities = 43/196 (21%), Positives = 76/196 (38%), Gaps = 30/196 (15%) Query: 109 WSTWITEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPY--VQGQVQYLEKALGWARKNNI 166 W I ++ F I G + VRIPI W+ PY + + +++ + A K + Sbjct: 30 WGVVIKDEFFDIIKEAGFSHVRIPI-RWSTHAYAFPPYKIMDRFFKRVDEVINGALKRGL 88 Query: 167 RVWIDLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEYSDVVIGIE 226 V I++H N + ++ + L + I +Y +Y + + E Sbjct: 89 AVVINIHHYEELMNDPE-------------EHKERFLALWKQIADRY--KDYPETLF-FE 132 Query: 227 LLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAFQVFGYWNNF-----LTVAE 281 +LNEP G L +K + + +R +II A W L+V + Sbjct: 133 ILNEPHGN-LTPEKWNELLEEALKVIRSIDKKHTIIIGTA-----EWGGISALEKLSVPK 186 Query: 282 GQWNVVVDHHHYQVFS 297 + N +V H+Y F Sbjct: 187 WEKNSIVTIHYYNPFE 202 >5E0C-A nrPDB Length = 537 Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust. Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 3/63 (4%) Query: 113 ITEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQ--VQYLEKALGWARKNNIRVWI 170 +T + K I++ G +RIP+ W Q+ + Y + +E+ + WA + ++ V + Sbjct: 42 VTRELIKTIADEGYKSIRIPVT-WENQMGNAPDYTINEDFFSRVEQVIDWALEEDLYVML 100 Query: 171 DLH 173 +LH Sbjct: 101 NLH 103 >1UR0-A nrPDB Length = 399 Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 65/163 (39%), Gaps = 30/163 (18%) Query: 118 FKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQVQY------LEKALGWARK---NNIRV 168 FK + G+N+VR+ I W NDPY Y LEKA+ ++ N +++ Sbjct: 54 FKTLKEAGVNYVRVRI--W------NDPYDANGNGYGGGNNDLEKAIQIGKRATANGMKL 105 Query: 169 WIDLH-----GAPGSQNGFDNSGLRDSYNFQNGDNT--QVTLNVLNTIFKKYGGNEYSDV 221 D H P Q + NF++ Q T L + K G + V Sbjct: 106 LADFHYSDFWADPAKQKA---PKAWANLNFEDKKTALYQYTKQSLKAM--KAAGIDIGMV 160 Query: 222 VIGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIH 264 +G E N L + K+ Q F G ++R+T S V +H Sbjct: 161 QVGNE-TNGGLAGETDWAKMSQLFNAGSQAVRETDSNILVALH 202 >4JIE-A nrPDB Length = 503 Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 15/89 (16%) Query: 55 GVNLGGWFVLEPYMTPSLFEPFQNGNDQSGVPVDEYHWTQTLGKEAASRILQKHWSTWIT 114 G+N +V E Y P++ +NG DQ G + + T G RI +++ +IT Sbjct: 388 GINKAVTYVKETYGNPTMILS-ENGMDQPG------NVSITQGVHDTVRI--RYYRNYIT 438 Query: 115 EQDFKQISNLGLNFVRIPIGYWAFQLLDN 143 E K+ + G IGY+A+ LLDN Sbjct: 439 E--LKKAIDDGAKV----IGYFAWSLLDN 461 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 2PBO-A nrPDB 726 0.0 1H4P-A nrPDB 639 0.0 1CEO-A nrPDB 202 2e-52 Sequences not found previously or not previously below threshold: 1VJZ-A nrPDB 63 3e-10 3AZS-A nrPDB 57 2e-08 3NCO-A nrPDB 57 2e-08 3W0K-A nrPDB 57 2e-08 4W7V-A nrPDB 52 7e-07 4U5I-A nrPDB 50 2e-06 4M24-A nrPDB 50 3e-06 4LX4-A nrPDB 48 7e-06 4YZP-A nrPDB 43 3e-04 4W8B-A nrPDB 42 5e-04 4NF7-A nrPDB 40 0.001 3WFL-A nrPDB 40 0.002 5H4R-A nrPDB 40 0.003 2OYK-A nrPDB 38 0.009 1EDG-A nrPDB 38 0.010 4IM4-A nrPDB 38 0.011 5D8Z-A nrPDB 37 0.014 5E0C-A nrPDB 37 0.017 3NDZ-A nrPDB 37 0.019 6GL0-A nrPDB 35 0.061 1WKY-A nrPDB 35 0.063 1UR0-A nrPDB 34 0.10 1ECE-A nrPDB 34 0.16 2JEP-A nrPDB 33 0.17 4HU0-A nrPDB 33 0.19 5A94-A nrPDB 33 0.29 4V2X-A nrPDB 32 0.39 1PBG-A nrPDB 32 0.45 6A8M-A nrPDB 32 0.50 6HA9-A nrPDB 32 0.81 3ZMR-A nrPDB 31 1.0 4YHG-A nrPDB 31 1.3 3JUG-A nrPDB 31 1.3 1BGG-A nrPDB 31 1.4 5WKA-A nrPDB 30 1.5 4W84-A nrPDB 30 1.6 5IG4-A nrPDB 30 1.6 4XZW-A nrPDB 30 2.0 3MAN-A nrPDB 30 2.2 4XZB-A nrPDB 30 3.1 4OEP-A nrPDB 29 3.2 5MZA-A nrPDB 29 3.3 4R27-A nrPDB 29 3.8 3WE0-A nrPDB 29 3.9 4TUF-A nrPDB 29 3.9 3QHO-A nrPDB 29 4.4 6ID0-C nrPDB 29 4.9 4MPS-A nrPDB 28 7.6 2VRK-A nrPDB 28 7.7 3K4D-A nrPDB 28 8.4 >2PBO-A nrPDB Length = 400 Score = 726 bits (1873), Expect = 0.0, Method: Composition-based stats. Identities = 397/400 (99%), Positives = 399/400 (99%) Query: 39 GGGHNVAWDYDNNVIRGVNLGGWFVLEPYMTPSLFEPFQNGNDQSGVPVDEYHWTQTLGK 98 GGGHNVAWDYDNNVIRGVNLGGWFVL+PYMTPSLFEPFQNGNDQSGVPVDEYHWTQTLGK Sbjct: 1 GGGHNVAWDYDNNVIRGVNLGGWFVLQPYMTPSLFEPFQNGNDQSGVPVDEYHWTQTLGK 60 Query: 99 EAASRILQKHWSTWITEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQVQYLEKAL 158 EAA RILQKHWSTWITEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQVQYLEKAL Sbjct: 61 EAALRILQKHWSTWITEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQVQYLEKAL 120 Query: 159 GWARKNNIRVWIDLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEY 218 GWARKNNIRVWIDLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEY Sbjct: 121 GWARKNNIRVWIDLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEY 180 Query: 219 SDVVIGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAFQVFGYWNNFLT 278 SDVVIGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAFQVFGYWNNFLT Sbjct: 181 SDVVIGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAFQVFGYWNNFLT 240 Query: 279 VAEGQWNVVVDHHHYQVFSGGELSRNINDHISVACNWGWDAKKESHWNVAGEWSAALTDC 338 VAEGQWNVVVDHHHYQVFSGGELSRNINDHISVACNWGWDAKKESHWNVAGEWSAALTDC Sbjct: 241 VAEGQWNVVVDHHHYQVFSGGELSRNINDHISVACNWGWDAKKESHWNVAGEWSAALTDC 300 Query: 339 AKWLNGVNRGARYEGAYDNAPYIGSCQPMLDISQWSDEHKTDTRRYIEAQLDAFEYTGGW 398 AKWLNGVNRGARYEGAYDNAPYIGSCQP+LDISQWSDEHKTDTRRYIEAQLDAFEYTGGW Sbjct: 301 AKWLNGVNRGARYEGAYDNAPYIGSCQPLLDISQWSDEHKTDTRRYIEAQLDAFEYTGGW 360 Query: 399 VFWSWKTENAPEWSFQTLTYNGLFPQPVTDRQFPNQCGFH 438 VFWSWKTENAPEWSFQTLTYNGLFPQPVTDRQFPNQCGFH Sbjct: 361 VFWSWKTENAPEWSFQTLTYNGLFPQPVTDRQFPNQCGFH 400 >1H4P-A nrPDB Length = 408 Score = 639 bits (1648), Expect = 0.0, Method: Composition-based stats. Identities = 241/403 (59%), Positives = 298/403 (73%), Gaps = 12/403 (2%) Query: 46 WDYDNNV----IRGVNLGGWFVLEPYMTPSLFEPFQNGND-QSGVPVDEYHWTQTLGKEA 100 +DYD+ IRGVN+GGW +LEPY+TPSLFE F+ +D G+PVDEYH+ Q LGK+ Sbjct: 2 YDYDHGSLGEPIRGVNIGGWLLLEPYITPSLFEAFRTNDDNDEGIPVDEYHFCQYLGKDL 61 Query: 101 ASRILQKHWSTWITEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQG-QVQYLEKALG 159 A LQ HWST+ EQDF I++ G N VRIPIGYWAFQ+LD+DPYV G Q YL++A+G Sbjct: 62 AKSRLQSHWSTFYQEQDFANIASQGFNLVRIPIGYWAFQILDDDPYVSGLQESYLDQAIG 121 Query: 160 WARKNNIRVWIDLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEYS 219 WAR N+++VW+DLHGA GSQNGFDNSGLRDSY F N VT+NVLN I KKY EY Sbjct: 122 WARNNSLKVWVDLHGAAGSQNGFDNSGLRDSYKFLEDSNLAVTINVLNYILKKYSAEEYL 181 Query: 220 DVVIGIELLNEPLGPVLNMDKLKQFFLD-GYNSLRQ-TGSVTPVIIHDAFQVFGYWNNFL 277 D+VIGIEL+NEPLGPVL+MDK+K +L Y LR S +IIHDAFQ + YW++F+ Sbjct: 182 DIVIGIELINEPLGPVLDMDKMKNDYLAPAYEYLRNNIKSDQVIIIHDAFQPYNYWDDFM 241 Query: 278 TVAEGQWNVVVDHHHYQVFSGGELSRNINDHISVACNWGWDAKKESHWNVAGEWSAALTD 337 T +G W V +DHHHYQVF+ +L R+I++HI VAC WG ESHW V GE++AALTD Sbjct: 242 TENDGYWGVTIDHHHYQVFASDQLERSIDEHIKVACEWGTGVLNESHWIVCGEFAAALTD 301 Query: 338 CAKWLNGVNRGARYEGAYDN----APYIGSCQPMLDISQWSDEHKTDTRRYIEAQLDAFE 393 C KWLN V GARY+G++ N + YIGSC DI+ WSDE K +TRRY+EAQLDAFE Sbjct: 302 CIKWLNSVGFGARYDGSWVNGDQTSSYIGSCANNDDIAYWSDERKENTRRYVEAQLDAFE 361 Query: 394 YTGGWVFWSWKTENAPEWSFQTLTYNGLFPQPVTDRQFPNQCG 436 GGW+ W +KTE++ EW Q L +NGLFPQP+TDR++PNQCG Sbjct: 362 MRGGWIIWCYKTESSLEWDAQRLMFNGLFPQPLTDRKYPNQCG 404 >1CEO-A nrPDB Length = 343 Score = 202 bits (515), Expect = 2e-52, Method: Composition-based stats. Identities = 41/160 (25%), Positives = 81/160 (50%), Gaps = 12/160 (7%) Query: 106 QKHWSTWITEQDFKQISNLGLNFVRIPIGYWAFQLLDN-DPYVQGQVQYLEKALGWARKN 164 ++H+ T+ITE+D + I+ G + VR+P Y + DN Y + + Y+++ L W +K Sbjct: 22 KEHFDTFITEKDIETIAEAGFDHVRLPFDYPIIESDDNVGEYKEDGLSYIDRCLEWCKKY 81 Query: 165 NIRVWIDLHGAPGSQ-NGFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEYSDVVI 223 N+ + +D+H APG + F S L F++ + + +++ + K+Y I Sbjct: 82 NLGLVLDMHHAPGYRFQDFKTSTL-----FEDPNQQKRFVDIWRFLAKRYINEREH---I 133 Query: 224 GIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVII 263 ELLN+ + P + + + L+ ++R+ S + I Sbjct: 134 AFELLNQVVEP--DSTRWNKLMLECIKAIREIDSTMWLYI 171 >1VJZ-A nrPDB Length = 341 Score = 62.7 bits (151), Expect = 3e-10, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 67/156 (42%), Gaps = 10/156 (6%) Query: 113 ITEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYV--QGQVQYLEKALGWARKNNIRVWI 170 E+DF ++ NFVRIP+ + +P++ + + +++ + W K I + I Sbjct: 37 FKEEDFLWMAQWDFNFVRIPMCH-LLWSDRGNPFIIREDFFEKIDRVIFWGEKYGIHICI 95 Query: 171 DLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEYSDVVIGIELLNE 230 LH APG + + +++ + ++ + I ++Y G S + L+NE Sbjct: 96 SLHRAPGY--SVNKEVEEKTNLWKDETAQEAFIHHWSFIARRYKG--ISSTHLSFNLINE 151 Query: 231 PLGP---VLNMDKLKQFFLDGYNSLRQTGSVTPVII 263 P P +++++ +R+ +II Sbjct: 152 PPFPDPQIMSVEDHNSLIKRTITEIRKIDPERLIII 187 >3AZS-A nrPDB Length = 317 Score = 56.6 bits (135), Expect = 2e-08, Method: Composition-based stats. Identities = 42/195 (21%), Positives = 72/195 (36%), Gaps = 30/195 (15%) Query: 109 WSTWITEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYV--QGQVQYLEKALGWARKNNI 166 W I ++ F I G + VRIPI W+ PY + +++ + A K + Sbjct: 30 WGVVIKDEFFDIIKEAGFSHVRIPI-RWSTHAYAFPPYKIMDRFFKRVDEVINGALKRGL 88 Query: 167 RVWIDLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEYSDVVIGIE 226 V I++H N ++ + L + I +Y + + E Sbjct: 89 AVVINIHHYEELMND-------------PEEHKERFLALWKQIADRY---KDYPETLFFE 132 Query: 227 LLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAFQVFGYWNNF-----LTVAE 281 +LNEP G L +K + + +R +II A W L+V + Sbjct: 133 ILNEPHG-NLTPEKWNELLEEALKVIRSIDKKHTIIIGTA-----EWGGISALEKLSVPK 186 Query: 282 GQWNVVVDHHHYQVF 296 + N +V H+Y F Sbjct: 187 WEKNSIVTIHYYNPF 201 >3NCO-A nrPDB Length = 320 Score = 56.6 bits (135), Expect = 2e-08, Method: Composition-based stats. Identities = 49/233 (21%), Positives = 96/233 (41%), Gaps = 30/233 (12%) Query: 109 WSTWITEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQVQYLEK---ALGWARKNN 165 W +I ++ FK I G + VRIPI W+ + + PY + +L++ + A KN+ Sbjct: 38 WGVYIEDEYFKIIKERGFDSVRIPI-RWSAHISEKYPYEIDKF-FLDRVKHVVDVALKND 95 Query: 166 IRVWIDLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEYSDVVIGI 225 + V I+ H D G V + + + + + +Y D + Sbjct: 96 LVVIINCHHFEELYQAPDKYG-------------PVLVEIWKQVAQAF--KDYPDKLF-F 139 Query: 226 ELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIH-DAFQVFGYWNNFLTVAEGQW 284 E+ NEP L K + + +R+T VII + + Y V + Sbjct: 140 EIFNEPAQ-NLTPTKWNELYPKVLGEIRKTNPSRIVIIDVPNWSNYSYVRELKLVDDK-- 196 Query: 285 NVVVDHHHYQVFS-GGELSRNINDHISVACNW---GWDAKK-ESHWNVAGEWS 332 N++V H+Y+ F+ + + ++ + + W W+ ++ +H+ EW+ Sbjct: 197 NIIVSFHYYEPFNFTHQGAEWVSPTLPIGVKWEGKDWEVEQIRNHFKYVSEWA 249 >3W0K-A nrPDB Length = 330 Score = 56.6 bits (135), Expect = 2e-08, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 16/157 (10%) Query: 115 EQDFKQISNLGLNFVRIPIGY--WAFQLLDNDPYVQGQVQYLEKALGWARKNNIRVWIDL 172 ++ ++ G NFVRIP+ Y W +P + +Y++ L NI + ++L Sbjct: 25 KKALDFLAETGFNFVRIPVDYRFWTRNFDYFNPDKK-VFEYIDLYLRECSARNIHMCLNL 83 Query: 173 HGAPGS---QNGFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEYSDVVIGIELLN 229 H APG +N + L Q+G + K+Y G S + +L+N Sbjct: 84 HRAPGYCINRNDIERDNLWLDKRAQDG-----FVYQWELFAKRYKG--VSSKFLSFDLVN 136 Query: 230 EP--LGPV-LNMDKLKQFFLDGYNSLRQTGSVTPVII 263 EP +G L + + ++R+ ++I Sbjct: 137 EPPNIGQYGLTRENHASLIIRTVEAIRKIDPDREIVI 173 >4W7V-A nrPDB Length = 332 Score = 51.6 bits (122), Expect = 7e-07, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 61/153 (39%), Gaps = 15/153 (9%) Query: 111 TWITEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQVQYLEKALGWARKNNIRVWI 170 T+ DF + G+N +R+P + Q N P Q Q+ ++K+L A+ N + + Sbjct: 48 TYPAASDFSYFAGKGMNTIRLPFLWERVQPELNGPLDQAQLGLIKKSLEAAKANKQYLIL 107 Query: 171 DLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEYSDVVIGIELLNE 230 DLH SG R + ++ + ++ D + L+NE Sbjct: 108 DLHNYATY------SGKRIGTS---DVPAGALADLWRRLALEFKD----DKAVIFGLMNE 154 Query: 231 PLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVII 263 P G ++ ++R+TG+ +++ Sbjct: 155 PNG--ISAPDWANAAQGTITAIRKTGAKNLILV 185 >4U5I-A nrPDB Length = 403 Score = 50.0 bits (118), Expect = 2e-06, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 64/174 (36%), Gaps = 29/174 (16%) Query: 109 WSTWITEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQ--VQYLEKALGWARKNNI 166 WS E F G VRIP+ W + PY + + +E+ + W+ Sbjct: 103 WSKSAMEYYFDDFKAAGYKNVRIPV-RWDNHTMRTYPYTIDKAFLDRVEQVVDWSLSRGF 161 Query: 167 RVWIDLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEYSDVVIGIE 226 I+ H + ++ N + + I +++ + + E Sbjct: 162 VTIINSHHDDWIKEDYN-------------GNIERFEKIWEQIAERFKNKSEN---LLFE 205 Query: 227 LLNEPLGPVLN--MDKLKQFFLDGYNSLRQTGSVTPVIIHDAFQVFGYWNNFLT 278 ++NEP G + + +D + L +R+T VII GYWN++ T Sbjct: 206 IMNEPFGNITDEQIDDMNSRIL---KIIRKTNPTRIVIIGG-----GYWNSYNT 251 >4M24-A nrPDB Length = 321 Score = 49.6 bits (117), Expect = 3e-06, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 71/187 (37%), Gaps = 19/187 (10%) Query: 112 WITEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQVQYLEKALGWARKNNIRVWID 171 + E F+ S G++ VR P+ + Q N ++ L A++N+I+V +D Sbjct: 29 FPPEGYFEYWSEQGIHTVRFPLKWERLQPSLNAELDDVYASLVDDMLDQAKENDIKVILD 88 Query: 172 LHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEYSDVVIGIELLNEP 231 +H + + +++ I K++ G D + +++NEP Sbjct: 89 VHNYARYRKKVIGT---------EDVPVSAYQDLMERIAKRWQG---HDALFAYDIMNEP 136 Query: 232 LGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIH-----DAFQVFGYWNNFLTVAEGQWNV 286 G + G + +R+ P++I A + Y + L + + N+ Sbjct: 137 YGSADKL--WPAAAQAGIDGVRKYDKKRPLLIEGASWSSAARWPRYADELLKLKDPADNM 194 Query: 287 VVDHHHY 293 V H Y Sbjct: 195 VFSAHVY 201 >4LX4-A nrPDB Length = 330 Score = 48.1 bits (113), Expect = 7e-06, Method: Composition-based stats. Identities = 42/211 (19%), Positives = 83/211 (39%), Gaps = 27/211 (12%) Query: 112 WITEQD-FKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQVQYLEKALGWARKNNIRVWI 170 + E+ FK ++ G+ +R P + Q + Q++ L+K L A +N +V + Sbjct: 37 FYPEKKHFKYYADQGIRLIRFPFIWERVQHSLDSGLNFDQIRLLKKTLDLAAQNGQKVIL 96 Query: 171 DLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEYSDVVIGIELLNE 230 D+H S + +V + +++ G ++G +++NE Sbjct: 97 DMHNYGRYHGELIGSSKVPY---------EAYASVWRKLAERFKG---HPGLLGYDIMNE 144 Query: 231 PLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIH-DAFQVFGYW----NNFLTVAEGQWN 285 P V +++R+ T + I + + +W NFL + + Sbjct: 145 PHSTV---GLWPGAAQAAVDAIREVDDQTLIFIEGERWSSAYHWPLVNANFL-INDPADR 200 Query: 286 VVVDHHHY--QVFSG---GELSRNINDHISV 311 ++ + H Y FSG + SRNI+ I V Sbjct: 201 LIYEAHLYFDDDFSGKYMAQTSRNIDPMIGV 231 >4YZP-A nrPDB Length = 536 Score = 42.7 bits (99), Expect = 3e-04, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 21/157 (13%) Query: 113 ITEQDFKQISNLGLNFVRIPIGYWA-FQLLDNDPYVQGQVQYLEKALGWARKNNIRVWID 171 + E F I + G VRIP+ + + P + +E+ WA + V ++ Sbjct: 55 VREHTFDDIRDAGFKSVRIPVTWDSHIGSAPEYPIDTDWMNRVEEVTDWALEREFYVVLN 114 Query: 172 LHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLN----VLNTIFKKYGGNEYSDVVIGIEL 227 +H +S L S G++ Q TL+ V I +++ + E+ Sbjct: 115 IHH---------DSWLWISRM---GNSQQETLDKLGKVWKQIAERFKNKSER---LLFEI 159 Query: 228 LNEPLG-PVLNMDKLKQFFLDGYNSLRQTGSVTPVII 263 +NEP G M+ L + L+ S VI+ Sbjct: 160 VNEPTGMSAYQMNLLNREMLNIIRSTGGKNGQRLVIV 196 >4W8B-A nrPDB Length = 386 Score = 41.9 bits (97), Expect = 5e-04, Method: Composition-based stats. Identities = 34/203 (16%), Positives = 67/203 (33%), Gaps = 26/203 (12%) Query: 111 TWITEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQVQYLEKALGWARKNNIRVWI 170 T T+Q + G VRIP W N + +++ + + + I V + Sbjct: 36 TLTTQQIIDAVKAAGFKSVRIPCS-WDIHSDSNGEIDAQWMARVKQVVNYCINDGIYVVL 94 Query: 171 DLHGAPGSQNGFDNSGLRDSYNFQNG----DNTQVTLNVLNTIFKKYGGNEYSDVVIGIE 226 + H G S SY + ++ I ++ + + G Sbjct: 95 NDHWDNGWIEVLGFSKSSSSYQAVDEATITSKITRLKDLWTQIANEFKDYDEHLLFAG-- 152 Query: 227 LLNEP-------------LGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAFQVFGYW 273 LNEP L P+L + Q F++ + + +++ Sbjct: 153 -LNEPFQEYSLFSGHHEELTPIL--CRYNQAFVEAVRATGGNNAQRTLVVQGPSTNINSS 209 Query: 274 NNFLTVA---EGQWNVVVDHHHY 293 N++T E ++V+ H+Y Sbjct: 210 VNYMTADKLPETAGRLMVEVHYY 232 >4NF7-A nrPDB Length = 363 Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 47/118 (39%), Gaps = 8/118 (6%) Query: 114 TEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQVQYLEKALGWARKNNIRVWIDLH 173 T+ +++ G N +RIP+ + + + + +++ + + N++ V ++ H Sbjct: 50 TKALIDEVAKAGFNTIRIPVSWGQYTSGSDYQIPDFVMNRVKEVVDYCIVNDMYVILNSH 109 Query: 174 GAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEYSDVVIGIELLNEP 231 S F N + + ++ I K++ +Y V E +NEP Sbjct: 110 HDINSDYCF-----YVPNNANKDRSEKYFKSIWTQIAKEFRNYDYHLV---FETMNEP 159 >3WFL-A nrPDB Length = 342 Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 17/139 (12%) Query: 138 FQLLDNDPYV----QGQVQYLEKALGWARKNNIRV-------WIDLHGAPGSQNGFDNSG 186 FQLL + ++ L+ + A ++N+++ W D G P N F S Sbjct: 71 FQLLQDGTATINTGSDGLERLDYVVSSAEQHNVKLIINFVNNWSDYGGIPAYVNAFGGST 130 Query: 187 LRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEYSDVVIGIELLNEPLGPVLNMDKLKQFFL 246 + + + + N + T+ +Y S V EL NEP + + + Sbjct: 131 ---TSWYTDEASQAAYRNYIKTVVSRYID---SPAVFAWELANEPRCHGCDTSVIYNWVA 184 Query: 247 DGYNSLRQTGSVTPVIIHD 265 + ++ S V I D Sbjct: 185 ATSSFIKSIDSQHLVCIGD 203 >5H4R-A nrPDB Length = 396 Score = 39.6 bits (91), Expect = 0.003, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 64/158 (40%), Gaps = 25/158 (15%) Query: 114 TEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQVQYLEKALGWARKNNIRVWIDLH 173 T+Q + G N +RIP+ + N + + +++ + +A KN + V I++H Sbjct: 82 TKQMIDTVKKAGFNTIRIPVSWHNHVTGSNFTISKRWLDRVQQVVDYAMKNKMYVIINIH 141 Query: 174 GAPGSQNGFDNSGLRDSYNFQNGDNTQVTL----NVLNTIFKKYGGNEYSDVVIGIELLN 229 + Y + N + Q ++ ++ + ++ Y+D +I E +N Sbjct: 142 H-----------DIMPGYYYPNSQHLQTSIKYVKSIWTQVATRFKN--YNDHLI-FEAVN 187 Query: 230 EP------LGPVLNMDKLK-QFFLDGYNSLRQTGSVTP 260 +P L+M+ + + ++ N L Q T Sbjct: 188 QPRLTGSRFEWWLDMNNPECRDAVEAINKLNQVFVDTV 225 >2OYK-A nrPDB Length = 481 Score = 37.7 bits (86), Expect = 0.009, Method: Composition-based stats. Identities = 39/207 (18%), Positives = 70/207 (33%), Gaps = 66/207 (31%) Query: 113 ITEQDFK-QISNLGLNFVRIPIGYWAFQLLDNDPYVQGQVQYLEKA---LGWARKNNIRV 168 TE D + +++G NFVR I + + ++ P V Q QYL++ +GW + +V Sbjct: 66 FTEADLAREYADMGTNFVRFLISW---RSVEPAPGVYDQ-QYLDRVEDRVGWYAERGYKV 121 Query: 169 WIDLHG-----------------------------------------------APGSQNG 181 +D+H PG Sbjct: 122 MLDMHQDVYSGAITPEGNSGNGAGAIGNGAPAWATYMDGLPVEPQPRWELYYIQPGVMRA 181 Query: 182 FDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEYSDVVIGIELLNEPL-----GPVL 236 FDN + ++ + + + ++ N D V+ +L+NEP GP Sbjct: 182 FDN---FWNTTGKHPELVEHYAKAWRAVADRFADN---DAVVAYDLMNEPFGGSLQGPAF 235 Query: 237 NMDKLKQFFLDGYNSLRQTGSVTPVII 263 L + +++RQ T V + Sbjct: 236 EAGPLAAMYQRTTDAIRQVDQDTWVCV 262 >1EDG-A nrPDB Length = 380 Score = 37.7 bits (86), Expect = 0.010, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 52/152 (34%), Gaps = 15/152 (9%) Query: 114 TEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQVQYLEKALGWARKNNIRVWIDLH 173 T+Q I G N VRIP+ + + + +++ + + N + V ++ H Sbjct: 63 TKQMIDAIKQKGFNTVRIPVSWHPHVSGSDYKISDVWMNRVQEVVNYCIDNKMYVILNTH 122 Query: 174 GAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEYSDVVIGIELLNEPLG 233 G+ S + + + +V I ++ + + E +NEP Sbjct: 123 HDVDKVKGYFPSSQYMA------SSKKYITSVWAQIAARFANYDEHLI---FEGMNEP-R 172 Query: 234 PVLNMDKL-----KQFFLDGYNSLRQTGSVTP 260 V + ++ +D N + Q Sbjct: 173 LVGHANEWWPELTNSDVVDSINCINQLNQDFV 204 >4IM4-A nrPDB Length = 336 Score = 37.7 bits (86), Expect = 0.011, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 63/155 (40%), Gaps = 25/155 (16%) Query: 114 TEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQ--VQYLEKALGWARKNNIRVWID 171 T+ +++ +G N VR+P+ W + Y + + +E+ + + + I+ Sbjct: 38 TKAMIEKVREMGFNAVRVPVT-WDTHIGPAPDYKIDEAWLNRVEEVVNYVLDCGMYAIIN 96 Query: 172 LHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEYSDVVIGIELLNEP 231 LH DN+ + +Y + ++ + V I ++ + D + E +NEP Sbjct: 97 LHH--------DNTWIIPTYANEQRSKEKL-VKVWEQIATRF---KDYDDHLLFETMNEP 144 Query: 232 L----------GPVLNMDKLKQFFLDGYNSLRQTG 256 G N D + +F L N++R +G Sbjct: 145 REVGSPMEWMGGTYENRDVINRFNLAVVNTIRASG 179 >5D8Z-A nrPDB Length = 347 Score = 37.3 bits (85), Expect = 0.014, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 59/173 (34%), Gaps = 30/173 (17%) Query: 93 TQTLGKEAASRILQKHWSTWITEQDFKQISNLGLNFVRIPIGYWAFQLLD--NDPYVQGQ 150 TQ G + A ++ KH+ + + G N R+P+G W F + Sbjct: 52 TQYYGADGAGQM--KHF-----------VDDDGFNVFRLPVG-WQFITDGVAGGDIDEDN 97 Query: 151 VQYLEKALGWARKNNIRVWIDLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLNTIF 210 + + +D+H G G Q + ++I Sbjct: 98 WAEYDALVQACLDAGASCIVDVHNYARFNGEIIGQG---------GPTNQDFAALWSSIA 148 Query: 211 KKYGGNEYSDVVIGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVII 263 KY N+ I ++NEP V +++ ++RQ G+ + +I+ Sbjct: 149 AKYADNDK----IIFGVMNEP-HDVPDINLWADSVQAAVTAIRQAGATSQIIL 196 >5E0C-A nrPDB Length = 537 Score = 36.9 bits (84), Expect = 0.017, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 50/123 (40%), Gaps = 18/123 (14%) Query: 113 ITEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYV--QGQVQYLEKALGWARKNNIRVWI 170 +T + K I++ G +RIP+ W Q+ + Y + +E+ + WA + ++ V + Sbjct: 42 VTRELIKTIADEGYKSIRIPVT-WENQMGNAPDYTINEDFFSRVEQVIDWALEEDLYVML 100 Query: 171 DLHGAPGSQNGFDNSGLRDSYNFQN--GDNTQVTLNVLNTIFKKYGGNEYSDVVIGIELL 228 +LH YN ++ + + + +++ G + E + Sbjct: 101 NLHH----------DSWLWIYNMEHNYDEVMAKYTALWEQLSERFQG---HSHKLMFESV 147 Query: 229 NEP 231 NEP Sbjct: 148 NEP 150 >3NDZ-A nrPDB Length = 345 Score = 36.9 bits (84), Expect = 0.019, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 27/152 (17%) Query: 118 FKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQ--VQYLEKALGWARKNNIRVWIDLHGA 175 +I G N +R+P+ W + Y Q ++ +E+ +A N++ V I+LH Sbjct: 48 INKIKEAGFNTLRLPVT-WDGHMGAAPEYTIDQTWMKRVEEIANYAFDNDMYVIINLHH- 105 Query: 176 PGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEYSDVVIGIELLNEPLGPV 235 +N L+ Y + Q+T V I + +Y D +I E +NEP PV Sbjct: 106 -------ENEWLKPFYANEAQVKAQLT-KVWTQIANNF--KKYGDHLI-FETMNEP-RPV 153 Query: 236 LNMDKL-----------KQFFLDGYNSLRQTG 256 + ++ L N++R TG Sbjct: 154 GASLQWTGGSYENREVVNRYNLTAVNAIRATG 185 >6GL0-A nrPDB Length = 331 Score = 35.0 bits (79), Expect = 0.061, Method: Composition-based stats. Identities = 43/197 (21%), Positives = 79/197 (40%), Gaps = 31/197 (15%) Query: 114 TEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYV--QGQVQYLEKALGWARKNNIRVWID 171 T+ +I+ +G +R+P+ W F + + Y+ + +E +A +N + V I+ Sbjct: 41 TKAMIDEIAKMGFKTLRLPVT-WKFHIGEGPDYLIEANWLDKVEAIANFALENEMYVIIN 99 Query: 172 LHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEYSDVVIGIELLNEP 231 +H D + + +Y + +++ V I ++ Y D +I E LNEP Sbjct: 100 IHH--------DETWILPTYEKADEVKDELS-KVWTQIANRF--KTYGDYLI-FETLNEP 147 Query: 232 L----------GPVLNMDKLKQFFLDGYNSLRQTGSV-----TPVIIHDAFQVFGYWNNF 276 G D + Q+ +++R TG V + A N++ Sbjct: 148 RHKGTPEEWKGGTQEGRDAVNQYHQVSVDAIRATGGNNAKRKIMVSTYAASTASNALNDY 207 Query: 277 LTVAEGQWNVVVDHHHY 293 L V G NV+V H Y Sbjct: 208 L-VPNGDKNVIVSVHSY 223 >1WKY-A nrPDB Length = 464 Score = 35.0 bits (79), Expect = 0.063, Method: Composition-based stats. Identities = 64/321 (19%), Positives = 105/321 (32%), Gaps = 92/321 (28%) Query: 108 HWSTWITEQD---FKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQVQYLEKALGWARKN 164 H W +Q + I+N G N VRI + D + + +Q + + A N Sbjct: 32 HGHAWYKDQATTAIEGIANTGANTVRIVLS-------DGGQWTKDDIQTVRNLISLAEDN 84 Query: 165 NIRVWIDLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEYSDVVIG 224 N+ +++H A G DS N ++ + G E D VI Sbjct: 85 NLVAVLEVHDATGY----------DSIASLN-----RAVDYWIEMRSALIGKE--DTVI- 126 Query: 225 IELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAF-----QVFGYWNNFLTV 279 I + NE G + + LR G ++I A Q + + Sbjct: 127 INIANEWFG-SWDGAAWADGYKQAIPRLRNAGLNNTLMIDAAGWGQFPQSIHDYGREVFN 185 Query: 280 AEGQWNVVVDHHHYQVFSGG---ELSRNINDHISVACNWGWDAKKESHWNVAGEWSAALT 336 A+ Q N + H Y+ ++GG ++ NI+ + V GE+ Sbjct: 186 ADPQRNTMFSIHMYE-YAGGNASQVRTNIDR-----------VLNQDLALVIGEF----- 228 Query: 337 DCAKWLNGVNRGARYEGAYDNAPYIGSCQPMLDISQWSDEHKTDTRRYIEAQLDAFEYTG 396 G R+ + I S +S++ Sbjct: 229 -----------GHRHTNGDVDESTIMS---------YSEQRGV----------------- 251 Query: 397 GWVFWSWKTENAPEWSFQTLT 417 GW+ WSWK N PEW + L+ Sbjct: 252 GWLAWSWKG-NGPEWEYLDLS 271 >1UR0-A nrPDB Length = 399 Score = 34.2 bits (77), Expect = 0.10, Method: Composition-based stats. Identities = 46/195 (23%), Positives = 73/195 (37%), Gaps = 31/195 (15%) Query: 118 FKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQVQY------LEKALGWARK---NNIRV 168 FK + G+N+VR+ I W NDPY Y LEKA+ ++ N +++ Sbjct: 54 FKTLKEAGVNYVRVRI--W------NDPYDANGNGYGGGNNDLEKAIQIGKRATANGMKL 105 Query: 169 WIDLHGAPGSQNGFDNSGLRD--SYNFQNGDNTQVTLNVLNTIFKKYGGNEYSDVVIGIE 226 D H + + + + NF++ + K G + V +G E Sbjct: 106 LADFHYSDFWADPAKQKAPKAWANLNFEDKKTALYQYTKQSLKAMKAAGIDIGMVQVGNE 165 Query: 227 LLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAFQVFGYWNNFLTVAEGQWNV 286 N L + K+ Q F G ++R+T S V +H + N T W Sbjct: 166 -TNGGLAGETDWAKMSQLFNAGSQAVRETDSNILVALH--------FTNPETSGRYAWIA 216 Query: 287 VVDHHH---YQVFSG 298 H H Y VF+ Sbjct: 217 ETLHRHHVDYDVFAS 231 >1ECE-A nrPDB Length = 358 Score = 33.8 bits (76), Expect = 0.16, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 29/206 (14%) Query: 118 FKQISNLGLNFVRIPIGYWA-----------FQLLDNDPYVQGQVQYLEKALGWARKNNI 166 QI +LG N +R+P F ++ D +Q ++K + +A + + Sbjct: 50 LDQIKSLGYNTIRLPYSDDILKPGTMPNSINFYQMNQDLQGLTSLQVMDKIVAYAGQIGL 109 Query: 167 RVWIDLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEYSDVVIGIE 226 R+ +D H D SG + + + + + ++ L + ++Y GN V+G + Sbjct: 110 RIILDRHRP-------DCSG-QSALWYTSSVSEATWISDLQALAQRYKGN---PTVVGFD 158 Query: 227 LLNEPLGPVL--NMDKLKQFFLDGYNSLRQTGSVTP--VIIHDAFQVFG---YWNNFLTV 279 L NEP P D + L + SV P +I + Q + YW Sbjct: 159 LHNEPHDPACWGCGDPSIDWRLAAERAGNAVLSVNPNLLIFVEGVQSYNGDSYWWGGNLQ 218 Query: 280 AEGQWNVVVDHHHYQVFSGGELSRNI 305 GQ+ VV++ + V+S + + ++ Sbjct: 219 GAGQYPVVLNVPNRLVYSAHDYATSV 244 >2JEP-A nrPDB Length = 395 Score = 33.4 bits (75), Expect = 0.17, Method: Composition-based stats. Identities = 50/242 (20%), Positives = 96/242 (39%), Gaps = 34/242 (14%) Query: 113 ITEQDFKQISNLGLNFVRIPIGYW-AFQLLDNDPYVQGQVQYLEKALGWARKNNIRVWID 171 +T + K++ G +RIP+ Y N + +++ + +A + V I+ Sbjct: 70 VTPELIKKVKAAGFKSIRIPVSYLNNIGSAPNYTINAAWLNRIQQVVDYAYNEGLYVIIN 129 Query: 172 LHGAPGSQNGFDNSGLRDSYNFQNGDNT----QVTLNVLNTIFKKYGGNEYSDVVIGIEL 227 +HG +G+++ ++ + NG N + V I K+ Y+D +I E Sbjct: 130 IHG-----DGYNS--VQGGWLLVNGGNQTAIKEKYKKVWQQIATKFSN--YNDRLI-FES 179 Query: 228 LNEPLGP---------VLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAFQVFGYWNNFLT 278 +NE N++ Q F+D ++RQTG + + + WN + Sbjct: 180 MNEVFDGNYGNPNSAYYTNLNAYNQIFVD---TVRQTGGNN----NARWLLVPGWNTNID 232 Query: 279 VAEGQWNVVVDHHHYQVFSGGELSRNINDHISVACNWGWDAKKESHWNVAGEWSAALTDC 338 G + + +Y+ + + I IS WD E + N+ +W A T+ Sbjct: 233 YTVGNYGFTLPTDNYRSSAIPSSQKRI--MISAHYYSPWDFAGEENGNIT-QWGATSTNP 289 Query: 339 AK 340 AK Sbjct: 290 AK 291 >4HU0-A nrPDB Length = 359 Score = 33.4 bits (75), Expect = 0.19, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 20/122 (16%) Query: 113 ITEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQVQYLEKALGWARKNNIRVWIDL 172 +++ F+ I + G N VR+P+ A++ + V+G ++ L++ + W + I +D Sbjct: 86 FSKKHFEVIRSWGANVVRVPVHPRAWK----ERGVKGYLELLDQVVAWNNELGIYTILDW 141 Query: 173 HGAPGSQNGFDNSGLRDSYNFQNGD---NTQVTLNVLNTIFKKYGGNEYSDVVIGIELLN 229 H + G S FQN T + + ++Y G + V E+ N Sbjct: 142 H----------SIGNLKSEMFQNNSYHTTKGETFDFWRRVSERYNG---INSVAFYEIFN 188 Query: 230 EP 231 EP Sbjct: 189 EP 190 >5A94-A nrPDB Length = 365 Score = 33.1 bits (74), Expect = 0.29, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 21/118 (17%) Query: 118 FKQISNL-GLNFVRIPIGYWAFQLLDNDPYVQGQVQYLEKALGWARKNNIRVWIDLHGAP 176 F++++N G+N +R+PI +++ L D Y + ++++A+ WA I + +D H Sbjct: 90 FEELANNWGVNTIRLPIHPVSWRKLGPDVY----LGHIDEAVRWANDLGIYLILDWH--- 142 Query: 177 GSQNGFDNSGLRDSYNFQNG---DNTQVTLNVLNTIFKKYGGNEYSDVVIGIELLNEP 231 + G + +Q+ + T + I +Y V EL NEP Sbjct: 143 -------SIGYLPTEQYQHPMYDTTIKETRDFWRRITFRYQN---VPTVAVYELFNEP 190 >4V2X-A nrPDB Length = 597 Score = 32.3 bits (72), Expect = 0.39, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 3/64 (4%) Query: 113 ITEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQ--VQYLEKALGWARKNNIRVWI 170 +T + +QI++ G +RIP+ W ++ Y + +++ + WA + ++ V I Sbjct: 90 VTRELIEQIADEGYKSIRIPVT-WENRIGGAPDYPIDPQFLNRVDQVVQWALEEDLYVMI 148 Query: 171 DLHG 174 +LH Sbjct: 149 NLHH 152 >1PBG-A nrPDB Length = 468 Score = 32.3 bits (72), Expect = 0.45, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 49/136 (36%), Gaps = 15/136 (11%) Query: 117 DFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQVQYLEKALGWARKNNIRVWIDLHGAP 176 D + G+N +RI I + + V++ K K ++ ++ LH Sbjct: 59 DLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHH-- 116 Query: 177 GSQNGFDN-SGLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEYSDVVIGIELLNEPLGPV 235 FD L + +F N +N + ++ F+++ Y NE +GP+ Sbjct: 117 -----FDTPEALHSNGDFLNRENIEHFIDYAAFCFEEFPEVNY------WTTFNE-IGPI 164 Query: 236 LNMDKLKQFFLDGYNS 251 + L F G Sbjct: 165 GDGQYLVGKFPPGIKY 180 >6A8M-A nrPDB Length = 461 Score = 31.9 bits (71), Expect = 0.50, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 9/76 (11%) Query: 216 NEYSDVVIGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAFQVFGYWNN 275 N+ + IEL P N+ + F D +R+ GS + D++Q Sbjct: 93 NKKLENTFKIELWQSSKEPGHNL----KLFEDLVERVREAGSAVGLATKDSYQ-----GK 143 Query: 276 FLTVAEGQWNVVVDHH 291 F+T +G W+ V+ H Sbjct: 144 FITEWKGVWDTAVEKH 159 >6HA9-A nrPDB Length = 396 Score = 31.5 bits (70), Expect = 0.81, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 53/144 (36%), Gaps = 9/144 (6%) Query: 113 ITEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQVQYLEKALGWARKNNIRVWIDL 172 ++ + K + + G + VRIP+ + + ++ + +++ + A N + V I++ Sbjct: 76 VSNELLKLVKDSGFDAVRIPVAWDQYANQESAEISAAWLNRVKQVVQMAIDNELYVLINI 135 Query: 173 HGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEYSDVVIGIELLNEPL 232 H G+ + + + +N + I + + G N Sbjct: 136 H----WDGGWLENNITPAKKDENNAKQKAF---WEQIATHLRDFDEHLLFAGTNAPNA-- 186 Query: 233 GPVLNMDKLKQFFLDGYNSLRQTG 256 MD L + +++R TG Sbjct: 187 ENAEQMDVLNSYLQTFVDAVRSTG 210 >3ZMR-A nrPDB Length = 475 Score = 31.1 bits (69), Expect = 1.0, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Query: 118 FKQISNLGLNFVRIPIGYWAFQLLDNDPY--VQGQVQYLEKALGWARKNNIRVWIDLHGA 175 F+ I G + VRIP+ Y + Q D Y + +E A+ A + V I++H Sbjct: 160 FEGIKAAGFDVVRIPVAY-SHQFEDAATYKIKSAWMDKVEAAVKAALDAGLYVIINIHWE 218 Query: 176 PGSQN 180 G N Sbjct: 219 GGWLN 223 >4YHG-A nrPDB Length = 389 Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 13/125 (10%) Query: 114 TEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYV--QGQVQYLEKALGWARKNNIRVWID 171 T+Q F ++ G VRIP+ W + + Y +G + +++ + A K + V I+ Sbjct: 43 TQQTFNGLAKAGFRSVRIPVT-WMGHIGNAPTYAIERGWLDRVDELVHMAHKAGLIVIIN 101 Query: 172 LHGAPGSQNGFDNSG-----LRDSYNFQNGDNT--QVTLNVLNTIFKKYGGNEYSDVVIG 224 +H + G L + + + Q + I K++ + + Sbjct: 102 IHHDGFGAADTPSKGSHWLDLPAAVASEERNQLIKQELTMIWLQIGKRFANDGE---WLV 158 Query: 225 IELLN 229 E LN Sbjct: 159 FETLN 163 >3JUG-A nrPDB Length = 345 Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats. Identities = 59/321 (18%), Positives = 100/321 (31%), Gaps = 92/321 (28%) Query: 108 HWSTWITEQD---FKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQVQYLEKALGWARKN 164 H W + I+ G N +RI + D + + + + + + A +N Sbjct: 47 HGHAWYKDTASTAIPAIAEQGANTIRIVLS-------DGGQWEKDDIDTVREVIELAEQN 99 Query: 165 NIRVWIDLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEYSDVVIG 224 + +++H A G RDS + ++ + G E D VI Sbjct: 100 KMVAVVEVHDATG----------RDSR-----SDLDRAVDYWIEMKDALIGKE--DTVI- 141 Query: 225 IELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAF------QVFGYWNNFLT 278 I + NE G + ++D LR G +++ A + Y + Sbjct: 142 INIANEWYG-SWDGAAWADGYIDVIPKLRDAGLTHTLMVDAAGWGQYPQSIHDYGQDVFN 200 Query: 279 VAEGQWNVVVDHHHYQVFSGG--ELSRNINDHISVACNWGWDAKKESHWNVAGEWSAALT 336 A+ N + H Y+ G + NI+ + V GE+ T Sbjct: 201 -ADPLKNTIFSIHMYEYAGGDANTVRSNIDR-----------VIDQDLALVIGEFGHRHT 248 Query: 337 DCAKWLNGVNRGARYEGAYDNAPYIGSCQPMLDISQWSDEHKTDTRRYIEAQLDAFEYTG 396 D G D I +S+E T Sbjct: 249 D---------------GDVDE----------DTILSYSEETGT----------------- 266 Query: 397 GWVFWSWKTENAPEWSFQTLT 417 GW+ WSWK N+ EW + L+ Sbjct: 267 GWLAWSWKG-NSAEWDYLDLS 286 >1BGG-A nrPDB Length = 448 Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 6/105 (5%) Query: 115 EQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQVQYLEKALGWARKNNIRVWIDLHG 174 E+D + + LG+ R + + + Q + Y + + N I + L+ Sbjct: 62 EEDIRLMKELGIRTYRFSVSWPRIFPNGDGEVNQEGLDYYHRVVDLLNDNGIEPFCTLYH 121 Query: 175 APGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEYS 219 Q L+D+ + N Q + T+F+++ G Sbjct: 122 WDLPQ------ALQDAGGWGNRRTIQAFVQFAETMFREFHGKIQH 160 >5WKA-A nrPDB Length = 473 Score = 30.4 bits (67), Expect = 1.5, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 107 KHWSTWITEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQVQYLEKALGWARKNNI 166 H+ W E+D ++ LG+ R + + P Q + + ++ + R NI Sbjct: 52 DHYHRW--EEDLDLLAELGVQAYRFSVAWPRIHPDVTGPANQKGLDFYQRLIDGLRDRNI 109 Query: 167 RVWIDLHG 174 ++ Sbjct: 110 IPLPTMYH 117 >4W84-A nrPDB Length = 340 Score = 30.4 bits (67), Expect = 1.6, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 16/121 (13%) Query: 114 TEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYV--QGQVQYLEKALGWARKNNIRVWID 171 T++ +++ G N +RIP+ + A L Y + +++ + +A + + + +D Sbjct: 43 TQEIVDTVNDRGFNAIRIPVTF-ANHLGPAPEYTISADWLARVKEVVDYAVNDGMYIILD 101 Query: 172 LHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYG-GNEYSDVVIGIELLNE 230 H + + +N L I+K+ + D + E +NE Sbjct: 102 THHETNY------------WLKTDPNNEAALCEELAAIWKQLAEAFKDYDEKLMFEGMNE 149 Query: 231 P 231 P Sbjct: 150 P 150 >5IG4-A nrPDB Length = 145 Score = 30.4 bits (67), Expect = 1.6, Method: Composition-based stats. Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 2/36 (5%) Query: 63 VLEPYMTPSLFEPFQNGNDQSGVPVDEYHWTQTLGK 98 +++P++T FEPF NGN G+ ++++ TL K Sbjct: 43 LVDPHVT--CFEPFSNGNLVEGLEFHKFYFDNTLSK 76 >4XZW-A nrPDB Length = 313 Score = 30.0 bits (66), Expect = 2.0, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 75/203 (36%), Gaps = 29/203 (14%) Query: 204 NVLNTIFKKYGGN---EYSDVV-IGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVT 259 N+ K++ EY + + E+ NEP G V +K++ + + ++R Sbjct: 112 NLYKEQAKRFFAEMAREYGNTPNVIYEIANEPNGDVTWEEKIRPYADEVIRTIRSIDRDN 171 Query: 260 PVIIHDAFQVFGYW----NNFLTVAEGQWNVVVDHHHYQVFSGGELSRNINDHIS----- 310 +I+ G W ++ + N++ H Y G L N +S Sbjct: 172 LIIVGT-----GTWSQDVDDVASDPLPYKNIMYALHFYAGTHGQFLRDKANYALSKGTPI 226 Query: 311 VACNWGWDAKKESHWNVAGEWSAALTDCAKWLNGVNRGARYEGAY---DNAPYIGSCQPM 367 WG + +G+ L +WL ++ + D + +P Sbjct: 227 FVTEWGTS-------DASGDGGVFLDQSREWLKYLDSKTISWVNWSLCDKNEASAALRPG 279 Query: 368 LDI-SQWSDEHKTDTRRYIEAQL 389 D W D+H +D+ R+I+A+L Sbjct: 280 ADPHGGWGDDHLSDSGRFIKAKL 302 >3MAN-A nrPDB Length = 302 Score = 30.0 bits (66), Expect = 2.2, Method: Composition-based stats. Identities = 38/213 (17%), Positives = 66/213 (30%), Gaps = 35/213 (16%) Query: 107 KHWSTWITE--QDFKQISNLGLNFVRIPIGYWAFQLLDND-PYVQGQVQYLEKALGWARK 163 H W + Q F I + G N VR+ +L N + + + + ++ Sbjct: 25 SHPHNWYPQHTQAFADIKSHGANTVRV--------VLSNGVRWSKNGPSDVANVISLCKQ 76 Query: 164 NNIRVWIDLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEYSDVVI 223 N + +++H G S L + ++ + G E + Sbjct: 77 NRLICMLEVHDTTGYGEQSGASTLDQA------------VDYWIELKSVLQGEEDY---V 121 Query: 224 GIELLNEPLG-PVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAFQVFGYWNNFLTVAEG 282 I + NEP G + LR G +++ DA W N + Sbjct: 122 LINIGNEPYGNDSATVAAWATDTSAAIQRLRAAGFEHTLVV-DAPNWGQDWTNTMRNNAD 180 Query: 283 Q-------WNVVVDHHHYQVFSGGELSRNINDH 308 Q N V H Y V+S + +H Sbjct: 181 QVYASDPTGNTVFSIHMYGVYSQASTITSYLEH 213 >4XZB-A nrPDB Length = 314 Score = 29.6 bits (65), Expect = 3.1, Method: Composition-based stats. Identities = 42/208 (20%), Positives = 83/208 (39%), Gaps = 38/208 (18%) Query: 204 NVLNTIFKKYGGN------EYSDVVIGIELLNEPLG-PVLNMDKLKQFFLDGYNSLRQTG 256 N+ K++ +Y +V+ E+ NEP G V +K++ + + ++R Sbjct: 112 NLYKEQAKRFFAEMAREYGKYPNVI--YEIANEPNGNDVTWEEKIRPYADEVIRTIRSID 169 Query: 257 SVTPVIIHDAFQVFGYW----NNFLTVAEGQWNVVVDHHHYQVFSGGELSRNINDHISVA 312 +I+ G W ++ + N++ H Y G ++ + D + A Sbjct: 170 RDNLIIVGT-----GTWSQDVDDVASDPLPYKNIMYAVHFY----SGTHTQWLRDRVDAA 220 Query: 313 CNWGWDAKKESHW---NVAGEWSAALTDCAKWLNGVN-RGARYEGAYDNAPYI------G 362 G S W + +G+ L + KW+ +N RG ++ N Sbjct: 221 LQAGTPVF-VSEWGTSDASGDGGPYLEEAEKWIEFLNERGI----SWVNWSLCDKNEASA 275 Query: 363 SCQPMLDI-SQWSDEHKTDTRRYIEAQL 389 + +P D W D+H +D+ R+I+A+L Sbjct: 276 ALRPGADPHGGWGDDHLSDSGRFIKAKL 303 >4OEP-A nrPDB Length = 107 Score = 29.2 bits (64), Expect = 3.2, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 23/38 (60%) Query: 170 IDLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLN 207 + LH APG G SG RD+ +FQ+G+ + V +VL Sbjct: 11 VTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLK 48 >5MZA-A nrPDB Length = 488 Score = 29.2 bits (64), Expect = 3.3, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%) Query: 33 NLKFKRGGGHNVAWDYDNNVIRGVNLGGWFVLEPYMTPSLFEPFQNGNDQSGV 85 NL++ GGH + N I LG + Y + +++ ND+ G+ Sbjct: 120 NLEYLINGGHQAILNVKNGKINHSFLGDVLLAAKYQAQHTMKDYKSKNDKEGI 172 >4R27-A nrPDB Length = 434 Score = 29.2 bits (64), Expect = 3.8, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 1/59 (1%) Query: 116 QDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQVQYLEKALGWARKNNIRVWIDLHG 174 +D I+ LG R + WA + + + + ++ L R++ + + H Sbjct: 58 EDIALIAGLGFTSYRFSVE-WARIEPEEGHFSVAALDHYKRVLEACREHGLTPVVTFHH 115 >3WE0-A nrPDB Length = 580 Score = 29.2 bits (64), Expect = 3.9, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 19/110 (17%) Query: 300 ELSRNINDHISVACNWGWDAKKESHWNVAGEWSAALTDCAKWLNGVN-------RGARYE 352 ++R + ++V NWG ++A LT C WL + Sbjct: 323 RIARASDGRLAVTDNWGD----------CRHYAAVLTTCQSWLLTTQIDCEESLFSQKMW 372 Query: 353 GAYDNAPYIGSCQP--MLDISQWSDEHKTDTRRYIEAQLDAFEYTGGWVF 400 A D Y+ S + M+D W D+ R + L G ++F Sbjct: 373 MALDRTRYMQSSKTFVMVDRPFWKDKDPETGRDLMSMTLTDRLTRGTYLF 422 >4TUF-A nrPDB Length = 346 Score = 29.2 bits (64), Expect = 3.9, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 60/164 (36%), Gaps = 25/164 (15%) Query: 81 DQSGVPVDEYHWTQTLGKEAASRILQKHWSTWITEQDFKQISNLGLNFVRIPIGYWAFQL 140 D SG V + G E + ++ W+ + Q+ LG N VR+P A Sbjct: 11 DDSG-KVVQLKGVNVFGFETGNHVMHGLWARNWKDM-IVQMQGLGFNAVRLPF-CPATLR 67 Query: 141 LDNDPYVQG-----------QVQYLEKALGWARKNNIRVWIDLHGAPGSQNGFDNSGLRD 189 D P +Q L+K + + V +D H P D +G+ + Sbjct: 68 SDTMPASIDYSRNADLQGLTSLQILDKVIAEFNARGMYVLLD-HHTP------DCAGISE 120 Query: 190 SYNFQNGDNTQVTLNVLNTIFKKYGGNEYSDVVIGIELLNEPLG 233 + + L L + +Y Y V+G++L NEP G Sbjct: 121 LW-YTGSYTEAQWLADLRFVANRYKNVPY---VLGLDLKNEPHG 160 >3QHO-A nrPDB Length = 458 Score = 28.8 bits (63), Expect = 4.4, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 21/122 (17%) Query: 120 QISNLGLNFVRIPIGYWAFQ----------LLDNDPYVQGQVQYLEKALGWARKNNIRVW 169 QI +LG N +R+P + + + D +Q +EK + A I V Sbjct: 92 QIKSLGFNAIRLPFCTESVKPGTQPIGIDYSKNPDLRGLDSLQIMEKIIKKAGDLGIFVL 151 Query: 170 IDLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEYSDVVIGIELLN 229 +D H + + + + +N + K++G VIG +L N Sbjct: 152 LDYHRI--------GCTHIEPLWYTEDFSEEDFINTWIEVAKRFG---KYWNVIGADLKN 200 Query: 230 EP 231 EP Sbjct: 201 EP 202 >6ID0-C nrPDB Length = 972 Score = 28.8 bits (63), Expect = 4.9, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 20/40 (50%) Query: 266 AFQVFGYWNNFLTVAEGQWNVVVDHHHYQVFSGGELSRNI 305 A FG+ + T +GQ + HH+Q+ G L ++I Sbjct: 877 AIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSI 916 >4MPS-A nrPDB Length = 310 Score = 28.1 bits (61), Expect = 7.6, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 16/124 (12%) Query: 159 GWARKNNIRVWIDLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLN----TIFKKYG 214 G + + + ID H A NG NFQ ++ T+ ++N T K++ Sbjct: 95 GSLKNSQLGREIDNHDAVLRFNGAPTD------NFQQDVGSKTTIRLMNSQLVTTEKRFL 148 Query: 215 GNEYSDVVIGIELLNEPLGPVLNMDKLKQ----FFLDGYNSLRQTGSVTPVIIHDAFQVF 270 + GI ++ +P ++ K Q F + Y S R+ P I + Sbjct: 149 KDSLYTE--GILIVWDPSVYHADIPKWYQKPDYNFFETYKSYRRLNPSQPFYILKPQMPW 206 Query: 271 GYWN 274 W+ Sbjct: 207 ELWD 210 >2VRK-A nrPDB Length = 496 Score = 28.1 bits (61), Expect = 7.7, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 84 GVPVDEYHWTQTLG-KEAASRILQKHWSTWITEQDFKQ 120 G DEYHW +G +E R++ HW I F Sbjct: 73 GCFADEYHWKDGVGPREKRKRMVNTHWGGVIENNHFGT 110 >3K4D-A nrPDB Length = 605 Score = 28.1 bits (61), Expect = 8.4, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 55/158 (34%), Gaps = 9/158 (5%) Query: 108 HWSTWITEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQVQYLEKALGWARKNNIR 167 +++ + +D + G + V + + + + Y Y E+ L WA ++ I Sbjct: 291 YFTGFGRHED-ADLRGKGFDNVLMVHDHALMDWIGANSYRTSHYPYAEEMLDWADEHGI- 348 Query: 168 VWIDLHGAPGSQN----GFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEYSDVVI 223 V ID A G GF+ + N + L I + ++ V+ Sbjct: 349 VVIDETAAVGFNLSLGIGFEAGNKPKELYSEEAVNGETQQAHLQAIKELIARDKNHPSVV 408 Query: 224 GIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPV 261 + NE P +++F + R+ P+ Sbjct: 409 MWSIANE---PDTRPQGAREYFAPLAEATRKLDPTRPI 443 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.315 0.139 0.429 Lambda K H 0.267 0.0425 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,662,239 Number of Sequences: 36641 Number of extensions: 952023 Number of successful extensions: 2245 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 67 Number of HSP's that attempted gapping in prelim test: 2180 Number of HSP's gapped (non-prelim): 107 length of query: 438 length of database: 10,336,785 effective HSP length: 100 effective length of query: 338 effective length of database: 6,672,685 effective search space: 2255367530 effective search space used: 2255367530 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 61 (28.1 bits)