BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P29549 (495 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 2I0Q-A nrPDB 1013 0.0 1K8G-A nrPDB 659 0.0 3KJP-A nrPDB 48 7e-06 1QZH-A nrPDB 36 0.046 6BWY-A nrPDB 34 0.12 2IM5-A nrPDB 33 0.22 >2I0Q-A nrPDB Length = 495 Score = 1013 bits (2619), Expect = 0.0, Method: Compositional matrix adjust. Identities = 495/495 (100%), Positives = 495/495 (100%) Query: 1 MSTAAKQNRSTSRVSKKKTAAPKEGAAKKSDKGHKYEYVELAKASLTSAQPQHFYAVVID 60 MSTAAKQNRSTSRVSKKKTAAPKEGAAKKSDKGHKYEYVELAKASLTSAQPQHFYAVVID Sbjct: 1 MSTAAKQNRSTSRVSKKKTAAPKEGAAKKSDKGHKYEYVELAKASLTSAQPQHFYAVVID 60 Query: 61 ATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFEDLPIIHRAGDII 120 ATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFEDLPIIHRAGDII Sbjct: 61 ATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFEDLPIIHRAGDII 120 Query: 121 RVHRATLRLYNGQRQFNANVFYSSSWALFSTDKRSVTQEINNQDAVSDTTPFSFSSKHAT 180 RVHRATLRLYNGQRQFNANVFYSSSWALFSTDKRSVTQEINNQDAVSDTTPFSFSSKHAT Sbjct: 121 RVHRATLRLYNGQRQFNANVFYSSSWALFSTDKRSVTQEINNQDAVSDTTPFSFSSKHAT 180 Query: 181 IEKNEISILQNLRKWANQYFSSYSVISSDMYTALNKAQAQKGDFDVVAKILQVHELDEYT 240 IEKNEISILQNLRKWANQYFSSYSVISSDMYTALNKAQAQKGDFDVVAKILQVHELDEYT Sbjct: 181 IEKNEISILQNLRKWANQYFSSYSVISSDMYTALNKAQAQKGDFDVVAKILQVHELDEYT 240 Query: 241 NELKLKDASGQVFYTLSLKLKFPHVRTGEVVRIRSATYDETSTQKKVLILSHYSNIITFI 300 NELKLKDASGQVFYTLSLKLKFPHVRTGEVVRIRSATYDETSTQKKVLILSHYSNIITFI Sbjct: 241 NELKLKDASGQVFYTLSLKLKFPHVRTGEVVRIRSATYDETSTQKKVLILSHYSNIITFI 300 Query: 301 QSSKLAKELRAKIQDDHSVEVASLKKNVSLNAVVLTEVDKKHAALPSTSLQDLFHHADSD 360 QSSKLAKELRAKIQDDHSVEVASLKKNVSLNAVVLTEVDKKHAALPSTSLQDLFHHADSD Sbjct: 301 QSSKLAKELRAKIQDDHSVEVASLKKNVSLNAVVLTEVDKKHAALPSTSLQDLFHHADSD 360 Query: 361 KELQAQDTFRTQFYVTKIEPSDVKEWVKGYDRKTKKSSSLKGASGKGDNIFQVQFLVKDA 420 KELQAQDTFRTQFYVTKIEPSDVKEWVKGYDRKTKKSSSLKGASGKGDNIFQVQFLVKDA Sbjct: 361 KELQAQDTFRTQFYVTKIEPSDVKEWVKGYDRKTKKSSSLKGASGKGDNIFQVQFLVKDA 420 Query: 421 STQLNNNTYRVLLYTQDGLGANFFNVKADNLHKNADARKKLEDSAELLTKFNSYVDAVVE 480 STQLNNNTYRVLLYTQDGLGANFFNVKADNLHKNADARKKLEDSAELLTKFNSYVDAVVE Sbjct: 421 STQLNNNTYRVLLYTQDGLGANFFNVKADNLHKNADARKKLEDSAELLTKFNSYVDAVVE 480 Query: 481 RRNGFYLIKDTKLIY 495 RRNGFYLIKDTKLIY Sbjct: 481 RRNGFYLIKDTKLIY 495 >1K8G-A nrPDB Length = 320 Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/320 (100%), Positives = 320/320 (100%) Query: 1 MSTAAKQNRSTSRVSKKKTAAPKEGAAKKSDKGHKYEYVELAKASLTSAQPQHFYAVVID 60 MSTAAKQNRSTSRVSKKKTAAPKEGAAKKSDKGHKYEYVELAKASLTSAQPQHFYAVVID Sbjct: 1 MSTAAKQNRSTSRVSKKKTAAPKEGAAKKSDKGHKYEYVELAKASLTSAQPQHFYAVVID 60 Query: 61 ATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFEDLPIIHRAGDII 120 ATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFEDLPIIHRAGDII Sbjct: 61 ATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFEDLPIIHRAGDII 120 Query: 121 RVHRATLRLYNGQRQFNANVFYSSSWALFSTDKRSVTQEINNQDAVSDTTPFSFSSKHAT 180 RVHRATLRLYNGQRQFNANVFYSSSWALFSTDKRSVTQEINNQDAVSDTTPFSFSSKHAT Sbjct: 121 RVHRATLRLYNGQRQFNANVFYSSSWALFSTDKRSVTQEINNQDAVSDTTPFSFSSKHAT 180 Query: 181 IEKNEISILQNLRKWANQYFSSYSVISSDMYTALNKAQAQKGDFDVVAKILQVHELDEYT 240 IEKNEISILQNLRKWANQYFSSYSVISSDMYTALNKAQAQKGDFDVVAKILQVHELDEYT Sbjct: 181 IEKNEISILQNLRKWANQYFSSYSVISSDMYTALNKAQAQKGDFDVVAKILQVHELDEYT 240 Query: 241 NELKLKDASGQVFYTLSLKLKFPHVRTGEVVRIRSATYDETSTQKKVLILSHYSNIITFI 300 NELKLKDASGQVFYTLSLKLKFPHVRTGEVVRIRSATYDETSTQKKVLILSHYSNIITFI Sbjct: 241 NELKLKDASGQVFYTLSLKLKFPHVRTGEVVRIRSATYDETSTQKKVLILSHYSNIITFI 300 Query: 301 QSSKLAKELRAKIQDDHSVE 320 QSSKLAKELRAKIQDDHSVE Sbjct: 301 QSSKLAKELRAKIQDDHSVE 320 >3KJP-A nrPDB Length = 299 Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 50/200 (25%), Positives = 83/200 (41%), Gaps = 35/200 (17%) Query: 55 YAVVIDATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFEDLPIIH 114 Y VV PY + Y + IVD T + T +L++ +E LPII+ Sbjct: 26 YGVVKFFKPPYLSKGTDYCSVVTIVDQT------------NVKLTCLLFSGNYEALPIIY 73 Query: 115 RAGDIIRVHRATLRLYNGQRQFNANVFYSSSWALFSTDKRSVTQEINNQDAVSDTTPFSF 174 + GDI+R HR +++Y + Q + S+ S+T E + T Sbjct: 74 KNGDIVRFHRLKIQVYKKETQ-----------GITSSGFASLTFEGTLGAPIIPRT---- 118 Query: 175 SSKHATIEKNEISILQNLRKWANQYFSSYSVISSDMYTALNKAQAQKGD-FDVVAKILQV 233 SSK+ + +++ LR WA+ + S +T L Q FD+ ++L Sbjct: 119 SSKYFNFTTEDHKMVEALRVWASTHMSP-------SWTLLKLCDVQPMQYFDLTCQLLGK 171 Query: 234 HELDEYTNELKLKDASGQVF 253 E+D + LK+ D + F Sbjct: 172 AEVDGASFLLKVWDGTRTPF 191 >1QZH-A nrPDB Length = 187 Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 11/85 (12%) Query: 72 YICSLKIVDPTLYLKQQKGAGDASDYATLV-LYAKRFEDLPIIHRAGDIIRVHRATLRLY 130 ++ ++ + DPT D S + L++K+ DLP+I + G + +H+ TLR Y Sbjct: 67 WVTTVYLWDPTC---------DTSSIGLQIHLFSKQGNDLPVIKQVGQPLLLHQITLRSY 117 Query: 131 NGQRQ-FNANVFYSSSWALFSTDKR 154 + Q + + F + W FS++ + Sbjct: 118 RDRTQGLSKDQFRYALWPDFSSNSK 142 >6BWY-A nrPDB Length = 361 Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 11/85 (12%) Query: 72 YICSLKIVDPTLYLKQQKGAGDASDYATLV-LYAKRFEDLPIIHRAGDIIRVHRATLRLY 130 ++ ++ + DPT D S + L++K+ DLP+I + G + +H+ TLR Y Sbjct: 62 WVTTVYLWDPTC---------DTSSIGLQIHLFSKQGNDLPVIKQVGQPLLLHQITLRSY 112 Query: 131 NGQRQ-FNANVFYSSSWALFSTDKR 154 + Q + + F + W FS++ + Sbjct: 113 RDRTQGLSKDQFRYALWPDFSSNSK 137 >2IM5-A nrPDB Length = 394 Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust. Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 12/105 (11%) Query: 117 GDIIRVHRATLRLYNGQRQFNANVF---------YSSSWALFSTDKRSVTQEINNQDAVS 167 G+++R HRAT ++ +R+F+ V Y+ +LF T + + + VS Sbjct: 152 GELMREHRATFSIFGMRRRFSLEVEDRVTDILKQYAGE-SLFGTSNVHLAHKHGLR--VS 208 Query: 168 DTTPFSFSSKHATIEKNEISILQNLRKWANQYFSSYSVISSDMYT 212 T P + H I +++ + W N Y + +D YT Sbjct: 209 GTHPHEWIQFHGAIYGYKMANYVAMEDWINVYDGDLGTVLTDTYT 253 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 2I0Q-A nrPDB 876 0.0 1K8G-A nrPDB 538 e-153 3KJP-A nrPDB 256 1e-68 Sequences not found previously or not previously below threshold: 6BWY-A nrPDB 49 4e-06 1QZH-A nrPDB 49 4e-06 5GNE-A nrPDB 34 0.17 3IJ2-A nrPDB 32 0.82 2F8X-C nrPDB 30 2.9 1M7B-A nrPDB 30 3.2 1GWN-A nrPDB 30 3.2 6C95-A nrPDB 29 4.0 >2I0Q-A nrPDB Length = 495 Score = 876 bits (2264), Expect = 0.0, Method: Composition-based stats. Identities = 495/495 (100%), Positives = 495/495 (100%) Query: 1 MSTAAKQNRSTSRVSKKKTAAPKEGAAKKSDKGHKYEYVELAKASLTSAQPQHFYAVVID 60 MSTAAKQNRSTSRVSKKKTAAPKEGAAKKSDKGHKYEYVELAKASLTSAQPQHFYAVVID Sbjct: 1 MSTAAKQNRSTSRVSKKKTAAPKEGAAKKSDKGHKYEYVELAKASLTSAQPQHFYAVVID 60 Query: 61 ATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFEDLPIIHRAGDII 120 ATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFEDLPIIHRAGDII Sbjct: 61 ATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFEDLPIIHRAGDII 120 Query: 121 RVHRATLRLYNGQRQFNANVFYSSSWALFSTDKRSVTQEINNQDAVSDTTPFSFSSKHAT 180 RVHRATLRLYNGQRQFNANVFYSSSWALFSTDKRSVTQEINNQDAVSDTTPFSFSSKHAT Sbjct: 121 RVHRATLRLYNGQRQFNANVFYSSSWALFSTDKRSVTQEINNQDAVSDTTPFSFSSKHAT 180 Query: 181 IEKNEISILQNLRKWANQYFSSYSVISSDMYTALNKAQAQKGDFDVVAKILQVHELDEYT 240 IEKNEISILQNLRKWANQYFSSYSVISSDMYTALNKAQAQKGDFDVVAKILQVHELDEYT Sbjct: 181 IEKNEISILQNLRKWANQYFSSYSVISSDMYTALNKAQAQKGDFDVVAKILQVHELDEYT 240 Query: 241 NELKLKDASGQVFYTLSLKLKFPHVRTGEVVRIRSATYDETSTQKKVLILSHYSNIITFI 300 NELKLKDASGQVFYTLSLKLKFPHVRTGEVVRIRSATYDETSTQKKVLILSHYSNIITFI Sbjct: 241 NELKLKDASGQVFYTLSLKLKFPHVRTGEVVRIRSATYDETSTQKKVLILSHYSNIITFI 300 Query: 301 QSSKLAKELRAKIQDDHSVEVASLKKNVSLNAVVLTEVDKKHAALPSTSLQDLFHHADSD 360 QSSKLAKELRAKIQDDHSVEVASLKKNVSLNAVVLTEVDKKHAALPSTSLQDLFHHADSD Sbjct: 301 QSSKLAKELRAKIQDDHSVEVASLKKNVSLNAVVLTEVDKKHAALPSTSLQDLFHHADSD 360 Query: 361 KELQAQDTFRTQFYVTKIEPSDVKEWVKGYDRKTKKSSSLKGASGKGDNIFQVQFLVKDA 420 KELQAQDTFRTQFYVTKIEPSDVKEWVKGYDRKTKKSSSLKGASGKGDNIFQVQFLVKDA Sbjct: 361 KELQAQDTFRTQFYVTKIEPSDVKEWVKGYDRKTKKSSSLKGASGKGDNIFQVQFLVKDA 420 Query: 421 STQLNNNTYRVLLYTQDGLGANFFNVKADNLHKNADARKKLEDSAELLTKFNSYVDAVVE 480 STQLNNNTYRVLLYTQDGLGANFFNVKADNLHKNADARKKLEDSAELLTKFNSYVDAVVE Sbjct: 421 STQLNNNTYRVLLYTQDGLGANFFNVKADNLHKNADARKKLEDSAELLTKFNSYVDAVVE 480 Query: 481 RRNGFYLIKDTKLIY 495 RRNGFYLIKDTKLIY Sbjct: 481 RRNGFYLIKDTKLIY 495 >1K8G-A nrPDB Length = 320 Score = 538 bits (1385), Expect = e-153, Method: Composition-based stats. Identities = 320/320 (100%), Positives = 320/320 (100%) Query: 1 MSTAAKQNRSTSRVSKKKTAAPKEGAAKKSDKGHKYEYVELAKASLTSAQPQHFYAVVID 60 MSTAAKQNRSTSRVSKKKTAAPKEGAAKKSDKGHKYEYVELAKASLTSAQPQHFYAVVID Sbjct: 1 MSTAAKQNRSTSRVSKKKTAAPKEGAAKKSDKGHKYEYVELAKASLTSAQPQHFYAVVID 60 Query: 61 ATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFEDLPIIHRAGDII 120 ATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFEDLPIIHRAGDII Sbjct: 61 ATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFEDLPIIHRAGDII 120 Query: 121 RVHRATLRLYNGQRQFNANVFYSSSWALFSTDKRSVTQEINNQDAVSDTTPFSFSSKHAT 180 RVHRATLRLYNGQRQFNANVFYSSSWALFSTDKRSVTQEINNQDAVSDTTPFSFSSKHAT Sbjct: 121 RVHRATLRLYNGQRQFNANVFYSSSWALFSTDKRSVTQEINNQDAVSDTTPFSFSSKHAT 180 Query: 181 IEKNEISILQNLRKWANQYFSSYSVISSDMYTALNKAQAQKGDFDVVAKILQVHELDEYT 240 IEKNEISILQNLRKWANQYFSSYSVISSDMYTALNKAQAQKGDFDVVAKILQVHELDEYT Sbjct: 181 IEKNEISILQNLRKWANQYFSSYSVISSDMYTALNKAQAQKGDFDVVAKILQVHELDEYT 240 Query: 241 NELKLKDASGQVFYTLSLKLKFPHVRTGEVVRIRSATYDETSTQKKVLILSHYSNIITFI 300 NELKLKDASGQVFYTLSLKLKFPHVRTGEVVRIRSATYDETSTQKKVLILSHYSNIITFI Sbjct: 241 NELKLKDASGQVFYTLSLKLKFPHVRTGEVVRIRSATYDETSTQKKVLILSHYSNIITFI 300 Query: 301 QSSKLAKELRAKIQDDHSVE 320 QSSKLAKELRAKIQDDHSVE Sbjct: 301 QSSKLAKELRAKIQDDHSVE 320 >3KJP-A nrPDB Length = 299 Score = 256 bits (654), Expect = 1e-68, Method: Composition-based stats. Identities = 50/200 (25%), Positives = 83/200 (41%), Gaps = 35/200 (17%) Query: 55 YAVVIDATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFEDLPIIH 114 Y VV PY + Y + IVD T + T +L++ +E LPII+ Sbjct: 26 YGVVKFFKPPYLSKGTDYCSVVTIVDQT------------NVKLTCLLFSGNYEALPIIY 73 Query: 115 RAGDIIRVHRATLRLYNGQRQFNANVFYSSSWALFSTDKRSVTQEINNQDAVSDTTPFSF 174 + GDI+R HR +++Y + Q + S+ S+T E + T Sbjct: 74 KNGDIVRFHRLKIQVYKKETQ-----------GITSSGFASLTFEGTLGAPIIPRT---- 118 Query: 175 SSKHATIEKNEISILQNLRKWANQYFSSYSVISSDMYTALNKAQAQKGD-FDVVAKILQV 233 SSK+ + +++ LR WA+ + S +T L Q FD+ ++L Sbjct: 119 SSKYFNFTTEDHKMVEALRVWASTHMSP-------SWTLLKLCDVQPMQYFDLTCQLLGK 171 Query: 234 HELDEYTNELKLKDASGQVF 253 E+D + LK+ D + F Sbjct: 172 AEVDGASFLLKVWDGTRTPF 191 >6BWY-A nrPDB Length = 361 Score = 49.0 bits (115), Expect = 4e-06, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 18/128 (14%) Query: 35 KYEYVELAKASLTSAQPQ-------HFYAVVIDATFPYKT--NQERYICSLKIVDPTLYL 85 +Y+ EL S+ S+Q + + +V D T ++ + ++ ++ + DPT Sbjct: 16 EYKIGELTFQSIRSSQELQKKNTIVNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPT--- 72 Query: 86 KQQKGAGDASDYATLVLYAKRFEDLPIIHRAGDIIRVHRATLRLYNGQRQ-FNANVFYSS 144 +S + L++K+ DLP+I + G + +H+ TLR Y + Q + + F + Sbjct: 73 -----CDTSSIGLQIHLFSKQGNDLPVIKQVGQPLLLHQITLRSYRDRTQGLSKDQFRYA 127 Query: 145 SWALFSTD 152 W FS++ Sbjct: 128 LWPDFSSN 135 >1QZH-A nrPDB Length = 187 Score = 49.0 bits (115), Expect = 4e-06, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 18/128 (14%) Query: 35 KYEYVELAKASLTSAQPQ-------HFYAVVIDATFPYKT--NQERYICSLKIVDPTLYL 85 +Y+ EL S+ S+Q + + +V D T ++ + ++ ++ + DPT Sbjct: 21 EYKIGELTFQSIRSSQELQKKNTIVNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPT--- 77 Query: 86 KQQKGAGDASDYATLVLYAKRFEDLPIIHRAGDIIRVHRATLRLYNGQRQ-FNANVFYSS 144 +S + L++K+ DLP+I + G + +H+ TLR Y + Q + + F + Sbjct: 78 -----CDTSSIGLQIHLFSKQGNDLPVIKQVGQPLLLHQITLRSYRDRTQGLSKDQFRYA 132 Query: 145 SWALFSTD 152 W FS++ Sbjct: 133 LWPDFSSN 140 >5GNE-A nrPDB Length = 375 Score = 34.0 bits (76), Expect = 0.17, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 9/92 (9%) Query: 152 DKRSVTQEINNQDAVSDTTPFSFSSKHATIEKNEISILQNL---RKW-ANQYFSSYSVIS 207 D + + ++ + ++S P+ E S+ + + + W NQ+ +SY S Sbjct: 74 DSKKLLDKLTSYHSISTANPYPI-----NHEAQVHSLFEQIDPAKIWQTNQHLTSYINRS 128 Query: 208 SDMYTALNKAQAQKGDFDVVAKILQVHELDEY 239 + T + AQ K FD +A+ +++ Y Sbjct: 129 AKSRTGVEAAQWFKQQFDTLAQDYGRKDVESY 160 >3IJ2-A nrPDB Length = 230 Score = 31.7 bits (70), Expect = 0.82, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 35/97 (36%) Query: 99 TLVLYAKRFEDLPIIHRAGDIIRVHRATLRLYNGQRQFNANVFYSSSWALFSTDKRSVTQ 158 T + A+ PI R R RL+ R + V +S+ S+D + Sbjct: 28 TALAAARSAPTAPIAARVTGQTRNITVDPRLFKAARLHSPRVLFSTQPPPTSSDTLDLDF 87 Query: 159 EINNQDAVSDTTPFSFSSKHATIEKNEISILQNLRKW 195 + + + T + SS H E S+ ++ W Sbjct: 88 QAHGTIPFNRTHRSAASSTHPVFHMGEFSVCDSVSVW 124 >2F8X-C nrPDB Length = 434 Score = 29.8 bits (65), Expect = 2.9, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 8/60 (13%) Query: 144 SSWALFSTDKRSVTQEINNQDAVSDTTPFSFSSKHATIEKNEISILQ--------NLRKW 195 +SW + STDK T ++ TP ++++L+ NLR W Sbjct: 305 ASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESLQLNGGGDVAMLELTGQNFTPNLRVW 364 >1M7B-A nrPDB Length = 184 Score = 29.8 bits (65), Expect = 3.2, Method: Composition-based stats. Identities = 11/29 (37%), Positives = 14/29 (48%) Query: 235 ELDEYTNELKLKDASGQVFYTLSLKLKFP 263 E+D EL L D SG +Y L +P Sbjct: 49 EIDTQRIELSLWDTSGSPYYDNVRPLSYP 77 >1GWN-A nrPDB Length = 205 Score = 29.8 bits (65), Expect = 3.2, Method: Composition-based stats. Identities = 11/29 (37%), Positives = 14/29 (48%) Query: 235 ELDEYTNELKLKDASGQVFYTLSLKLKFP 263 E+D EL L D SG +Y L +P Sbjct: 70 EIDTQRIELSLWDTSGSPYYDNVRPLSYP 98 >6C95-A nrPDB Length = 866 Score = 29.4 bits (64), Expect = 4.0, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 13/87 (14%) Query: 181 IEKNEISILQNLR----KWANQYFSSYSVISSDMYTALNKA--------QAQKGDFDVVA 228 + S ++NL W + + AL K + FD Sbjct: 468 FTREGTSAVENLNEMQCMWFQTECAQAYKAMNKFGEALKKCHEIERHFIEITDDQFDFHT 527 Query: 229 KILQVHELDEYTNELKLKDASGQ-VFY 254 ++ L Y + LKL+D Q FY Sbjct: 528 YCMRKITLRSYVDLLKLEDVLRQHPFY 554 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.313 0.124 0.328 Lambda K H 0.267 0.0385 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,800,678 Number of Sequences: 36641 Number of extensions: 617946 Number of successful extensions: 1788 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 1765 Number of HSP's gapped (non-prelim): 24 length of query: 495 length of database: 10,336,785 effective HSP length: 101 effective length of query: 394 effective length of database: 6,636,044 effective search space: 2614601336 effective search space used: 2614601336 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 61 (28.2 bits)