BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= P29084
         (291 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

6O9L-R nrPDB                                                          594   e-170
5GPY-B nrPDB                                                          215   2e-56
1D8K-A nrPDB                                                          174   4e-44
5OQJ-X nrPDB                                                           54   7e-08
5ZBC-A nrPDB                                                           36   0.020
1M1C-A nrPDB                                                           31   0.50 
4CUK-A nrPDB                                                           29   1.9  
2H0U-A nrPDB                                                           28   3.9  
1JGT-A nrPDB                                                           28   5.2  
2KLR-A nrPDB                                                           27   8.7  
6D8G-A nrPDB                                                           27   9.1  
5Z1Z-A nrPDB                                                           27   9.3  

>6O9L-R nrPDB
          Length = 291

 Score =  594 bits (1532), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 291/291 (100%), Positives = 291/291 (100%)

Query: 1   MDPSLLRERELFKKRALSTPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNG 60
           MDPSLLRERELFKKRALSTPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNG
Sbjct: 1   MDPSLLRERELFKKRALSTPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNG 60

Query: 61  SFNLKALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLM 120
           SFNLKALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLM
Sbjct: 61  SFNLKALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLM 120

Query: 121 TEALVNNPKIEVIDGKYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQK 180
           TEALVNNPKIEVIDGKYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQK
Sbjct: 121 TEALVNNPKIEVIDGKYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQK 180

Query: 181 AVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQ 240
           AVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQ
Sbjct: 181 AVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQ 240

Query: 241 GISSMQESGPKKVAPIQRRKKPASQKKRRFKTHNEHLAGVLKDYSDITSSK 291
           GISSMQESGPKKVAPIQRRKKPASQKKRRFKTHNEHLAGVLKDYSDITSSK
Sbjct: 241 GISSMQESGPKKVAPIQRRKKPASQKKRRFKTHNEHLAGVLKDYSDITSSK 291


>5GPY-B nrPDB
          Length = 108

 Score =  215 bits (548), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 141 PKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQKAVKALGDQILFVNRPDKKKI 200
           PKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQKAVKALGDQILFVNRPDKKKI
Sbjct: 5   PKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQKAVKALGDQILFVNRPDKKKI 64

Query: 201 LFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQGISS 244
           LFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQGISS
Sbjct: 65  LFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQGISS 108


>1D8K-A nrPDB
          Length = 81

 Score =  174 bits (441), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 81/81 (100%), Positives = 81/81 (100%)

Query: 66  ALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLMTEALV 125
           ALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLMTEALV
Sbjct: 1   ALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLMTEALV 60

Query: 126 NNPKIEVIDGKYAFKPKYNVR 146
           NNPKIEVIDGKYAFKPKYNVR
Sbjct: 61  NNPKIEVIDGKYAFKPKYNVR 81


>5OQJ-X nrPDB
          Length = 328

 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 23/162 (14%)

Query: 135 GKYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQKAVKALG-DQILFVN 193
           G + +   Y+V     LL+LL    Q    GI  +D+++  P   + +  L  D  + V 
Sbjct: 176 GTFKYLSTYDVHSPSELLKLL--RSQVTFKGISCKDLKDGWPQCDETINQLEEDSKILVL 233

Query: 194 RPDKKKI---LFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQGISSMQESG- 249
           R  K K    +++N       +DEEF K+W +V +    E      L R+    +Q+ G 
Sbjct: 234 RTKKDKTPRYVWYNSGGNLKCIDEEFVKMWENVQLPQFAE------LPRK----LQDLGL 283

Query: 250 -PKKVAP--IQRRKKPASQKKRR---FKTHNEHLAGVLKDYS 285
            P  V P  I+R+ K    KK+R    K  N H+ G+LKDYS
Sbjct: 284 KPASVDPATIKRQTKRVEVKKKRQRKGKITNTHMTGILKDYS 325


>5ZBC-A nrPDB
          Length = 451

 Score = 35.8 bits (81), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 4/76 (5%)

Query: 185 LGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDE--EKIEEYLKRQGI 242
           L DQ+L V+ P  +KI F  DK   F  D E    WR    +  D   E+I  +L    +
Sbjct: 304 LDDQVLIVDNP-LRKIYFKGDKYLFFYTDSEMANYWRGCVAEGEDGYLEQIRTHLA-SAL 361

Query: 243 SSMQESGPKKVAPIQR 258
             ++E  P+ +A + +
Sbjct: 362 GIVRERIPQPLAHVHK 377


>1M1C-A nrPDB
          Length = 680

 Score = 31.2 bits (69), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 13/22 (59%), Positives = 15/22 (68%)

Query: 118 WLMTEALVNNPKIEVIDGKYAF 139
           WLM +ALVN PK   I G+Y F
Sbjct: 313 WLMHDALVNIPKFGSIRGRYPF 334


>4CUK-A nrPDB
          Length = 338

 Score = 29.3 bits (64), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 39/178 (21%)

Query: 59  NGSFNLKALSGSSGY----------KFGVLA-KIVNYMKTRHQRGDTHPLTLDEILDETQ 107
           + +F+L+ L+G + +          K GV A +I+     R    D +P         T 
Sbjct: 129 DANFSLEGLTGFTMHGKTAGVIGTGKIGVAALRILKGFGMRLLAFDPYP--------STA 180

Query: 108 HLDIGLKQK--QWLMTEALVNNPKIEVIDGKYAFKPK-YNVRDKKALLRLLDQHDQRGLG 164
            LD+G++    Q L  E+       +VI       P+ Y++ +  A        DQ   G
Sbjct: 181 ALDLGVEYVDLQTLFAES-------DVISLHCPLTPENYHLLNHAAF-------DQMKNG 226

Query: 165 GILLEDIEEALPNSQKAVKALGDQ---ILFVNRPDKKKILFFNDKSCQFSVDEEFQKL 219
            +++     AL +SQ A++AL +Q    L ++  + ++ LFF DKS     D+ F++L
Sbjct: 227 VMIINTSRGALIDSQAAIEALKNQKIGSLGMDVYENERDLFFEDKSVDVIQDDVFRRL 284


>2H0U-A nrPDB
          Length = 217

 Score = 28.5 bits (62), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 222 SVTVDSMDEEKIEEYLKRQGISSMQESGPKKVAPIQRRKKPASQKKR 268
           S  ++  D+EK+E YL+ +G  +  E G   +A    R +  + K R
Sbjct: 160 SCPIEGYDQEKVEAYLEEKGYLNTAEFGVSVMACFGYRNQEITPKTR 206


>1JGT-A nrPDB
          Length = 513

 Score = 28.1 bits (61), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 12/54 (22%)

Query: 94  THPLTLDEILDETQHLDIGLKQKQ----WLMTEAL--------VNNPKIEVIDG 135
           THP    E+LD    L+ GLK++     W++  A+        VN PK+ V +G
Sbjct: 396 THPYWDREVLDLLVSLEAGLKRRHGRDKWVLRAAMADALPAETVNRPKLGVHEG 449


>2KLR-A nrPDB
          Length = 175

 Score = 27.3 bits (59), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 7/57 (12%)

Query: 212 VDEEFQKLWRSVTVDSMDEEKIEEYLKRQGISSM-----QESGPKKVAPIQRRKKPA 263
           +  EF + +R +  D +D   I   L   G+ ++     Q SGP++  PI R +KPA
Sbjct: 114 ISREFHRKYR-IPAD-VDPLTITSSLSSDGVLTVNGPRKQVSGPERTIPITREEKPA 168


>6D8G-A nrPDB
          Length = 886

 Score = 26.9 bits (58), Expect = 9.1,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 6/105 (5%)

Query: 1   MDPSLLRERELFKKRALSTPVVEKRSASSESSSSSSKKK-KTKVEHGGSSGSKQNSDHSN 59
           M+  LL  +  +K  A   PV+E+  A +       K++  T++      GS  NS +  
Sbjct: 424 MNEILLVTQRKYKTEAELKPVLERTLALANRLERVLKEEDSTRISTMAFHGS--NSYNET 481

Query: 60  GSFNLKALSG---SSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDE 101
           G   +  + G     G+  G L     ++  +HQ   THP+ + E
Sbjct: 482 GLSKITDIVGWNLYQGWYGGDLTGFEKFLAQQHQNHPTHPMIVSE 526


>5Z1Z-A nrPDB
          Length = 329

 Score = 26.9 bits (58), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 3/64 (4%)

Query: 159 DQRGLGGILLEDIEEALPNSQKAVKALGDQ---ILFVNRPDKKKILFFNDKSCQFSVDEE 215
           DQ   G +++     AL +SQ A++AL +Q    L ++  + ++ LFF DKS     D+ 
Sbjct: 221 DQMKNGVMIVNTSRGALIDSQAAIEALKNQKIGSLGMDVYENERDLFFEDKSNDVIQDDV 280

Query: 216 FQKL 219
           F++L
Sbjct: 281 FRRL 284


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

6O9L-R nrPDB                                                          507   e-144
5OQJ-X nrPDB                                                          196   7e-51
1D8K-A nrPDB                                                          175   1e-44
5GPY-B nrPDB                                                          171   5e-43

Sequences not found previously or not previously below threshold:

5FMF-S nrPDB                                                          101   4e-22
3D31-A nrPDB                                                           34   0.059
4NHO-A nrPDB                                                           32   0.29 
1M1C-A nrPDB                                                           32   0.42 
3NV9-A nrPDB                                                           32   0.43 
4PHT-A nrPDB                                                           30   1.3  
3JCR-F nrPDB                                                           29   2.5  
1VPL-A nrPDB                                                           28   3.9  
3PMO-A nrPDB                                                           27   9.0  

>6O9L-R nrPDB
          Length = 291

 Score =  507 bits (1306), Expect = e-144,   Method: Composition-based stats.
 Identities = 291/291 (100%), Positives = 291/291 (100%)

Query: 1   MDPSLLRERELFKKRALSTPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNG 60
           MDPSLLRERELFKKRALSTPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNG
Sbjct: 1   MDPSLLRERELFKKRALSTPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNG 60

Query: 61  SFNLKALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLM 120
           SFNLKALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLM
Sbjct: 61  SFNLKALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLM 120

Query: 121 TEALVNNPKIEVIDGKYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQK 180
           TEALVNNPKIEVIDGKYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQK
Sbjct: 121 TEALVNNPKIEVIDGKYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQK 180

Query: 181 AVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQ 240
           AVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQ
Sbjct: 181 AVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQ 240

Query: 241 GISSMQESGPKKVAPIQRRKKPASQKKRRFKTHNEHLAGVLKDYSDITSSK 291
           GISSMQESGPKKVAPIQRRKKPASQKKRRFKTHNEHLAGVLKDYSDITSSK
Sbjct: 241 GISSMQESGPKKVAPIQRRKKPASQKKRRFKTHNEHLAGVLKDYSDITSSK 291


>5OQJ-X nrPDB
          Length = 328

 Score =  196 bits (499), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 77/277 (27%), Positives = 122/277 (44%), Gaps = 38/277 (13%)

Query: 24  KRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNGSFNLKALSG--SSGYKFGVLAKI 81
           K+ A S SS++ S       E  GSS SK+    S  +  L+A     S  +    L   
Sbjct: 72  KKEAGSNSSNAISLDDDDDDEDFGSSPSKKVRPGSIAAAALQANQTDISKSHDSSKLLWA 131

Query: 82  VNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLMTEALVNNPKIEV--IDGKYAF 139
             Y++ + +     P+ ++E+LD   +L +    K   + E L    +IE     G + +
Sbjct: 132 TEYIQKKGK-----PVLVNELLD---YLSMKKDDK---VIELLKKLDRIEFDPKKGTFKY 180

Query: 140 KPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQKAVKALG-DQILFVNRPDKK 198
              Y+V     LL+LL    Q    GI  +D+++  P   + +  L  D  + V R  K 
Sbjct: 181 LSTYDVHSPSELLKLL--RSQVTFKGISCKDLKDGWPQCDETINQLEEDSKILVLRTKKD 238

Query: 199 KI---LFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQGISSMQESG--PKKV 253
           K    +++N       +DEEF K+W +V +    E      L R+    +Q+ G  P  V
Sbjct: 239 KTPRYVWYNSGGNLKCIDEEFVKMWENVQLPQFAE------LPRK----LQDLGLKPASV 288

Query: 254 AP--IQRRKKPASQKKRR---FKTHNEHLAGVLKDYS 285
            P  I+R+ K    KK+R    K  N H+ G+LKDYS
Sbjct: 289 DPATIKRQTKRVEVKKKRQRKGKITNTHMTGILKDYS 325


>1D8K-A nrPDB
          Length = 81

 Score =  175 bits (444), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 81/81 (100%), Positives = 81/81 (100%)

Query: 66  ALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLMTEALV 125
           ALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLMTEALV
Sbjct: 1   ALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLMTEALV 60

Query: 126 NNPKIEVIDGKYAFKPKYNVR 146
           NNPKIEVIDGKYAFKPKYNVR
Sbjct: 61  NNPKIEVIDGKYAFKPKYNVR 81


>5GPY-B nrPDB
          Length = 108

 Score =  171 bits (432), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 104/107 (97%), Positives = 105/107 (98%)

Query: 138 AFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQKAVKALGDQILFVNRPDK 197
           +  PKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQKAVKALGDQILFVNRPDK
Sbjct: 2   SHMPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQKAVKALGDQILFVNRPDK 61

Query: 198 KKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQGISS 244
           KKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQGISS
Sbjct: 62  KKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQGISS 108


>5FMF-S nrPDB
          Length = 123

 Score =  101 bits (251), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 6/74 (8%)

Query: 135 GKYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQKAVKAL-GDQILFVN 193
           G + +   Y+V     LL+LL    Q    GI  +D+++  P   + +  L  D  + V 
Sbjct: 52  GTFKYLSTYDVHSPSELLKLL--RSQVTFKGISCKDLKDGWPQCDETINQLEEDSKILVL 109

Query: 194 RPDKKKI---LFFN 204
           R  K K    +++N
Sbjct: 110 RTKKDKTPRYVWYN 123


>3D31-A nrPDB
          Length = 348

 Score = 34.4 bits (77), Expect = 0.059,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 48/101 (47%), Gaps = 1/101 (0%)

Query: 97  LTLDEILDETQHLDIGLKQKQWLMTEALVNNPKIEVIDGKYAFKPKYNVRDKKALLRLLD 156
           L ++ +LD       G +Q++  +  ALV NPKI ++D   +        + + +L +L 
Sbjct: 115 LKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLH 174

Query: 157 QHDQRGLGGILLEDIEEALPNSQKAVKALGDQILFVNRPDK 197
           + ++  +  I   D  EA   + +    +  +++ V +P++
Sbjct: 175 KKNKLTVLHIT-HDQTEARIMADRIAVVMDGKLIQVGKPEE 214


>4NHO-A nrPDB
          Length = 488

 Score = 32.0 bits (71), Expect = 0.29,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 11/95 (11%)

Query: 185 LGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWR------SVT-----VDSMDEEKI 233
           LG   L   R  + K  + +    Q  +DE   + WR      S+T     + +      
Sbjct: 3   LGSARLRKLRKKEAKQRWDDRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWK 62

Query: 234 EEYLKRQGISSMQESGPKKVAPIQRRKKPASQKKR 268
           +  L    +  + + G K+  PIQR+  P   + R
Sbjct: 63  DSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNR 97


>1M1C-A nrPDB
          Length = 680

 Score = 31.7 bits (70), Expect = 0.42,   Method: Composition-based stats.
 Identities = 13/23 (56%), Positives = 15/23 (65%)

Query: 118 WLMTEALVNNPKIEVIDGKYAFK 140
           WLM +ALVN PK   I G+Y F 
Sbjct: 313 WLMHDALVNIPKFGSIRGRYPFL 335


>3NV9-A nrPDB
          Length = 487

 Score = 31.7 bits (70), Expect = 0.43,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 11/73 (15%)

Query: 140 KPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQKAVKALGDQILFVNRPDKKK 199
           K K    D  A++  + Q  Q   G I LEDI +  PN  K        IL V R     
Sbjct: 140 KNKEGKNDPDAVIEFV-QRIQHTFGAINLEDISQ--PNCYK--------ILDVLRESCDI 188

Query: 200 ILFFNDKSCQFSV 212
            ++ +D+    SV
Sbjct: 189 PVWHDDQQGTASV 201


>4PHT-A nrPDB
          Length = 500

 Score = 29.7 bits (65), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 43/131 (32%), Gaps = 29/131 (22%)

Query: 149 KALLRLLDQHDQRGLGGILLEDIEEALPNSQKAVKALGDQILFVNRPDKKKILFFNDKSC 208
            +LL +L Q   R L     +D        ++  +A  +Q        K  +  +  K C
Sbjct: 379 SSLLGVLAQRLVRTL----CQD-------CKEPYEADKEQRKLFGAKKKDALTLYRAKGC 427

Query: 209 QFS----------------VDEEFQKLWRSVTVDSMDEEKIEEYLKRQGISSMQES--GP 250
           +                  VD++ Q+L  +   +   ++ I E+        + +   G 
Sbjct: 428 EKCNHKGYRGRTGIHELLMVDDKVQELIHAEAGEQAMDKYIREHTPSIRSDGLDKVLQGV 487

Query: 251 KKVAPIQRRKK 261
             +  + R  K
Sbjct: 488 TSLEEVMRVTK 498


>3JCR-F nrPDB
          Length = 820

 Score = 29.0 bits (63), Expect = 2.5,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 53/151 (35%), Gaps = 18/151 (11%)

Query: 134 DGKYAFKPKYNVRDKKALLRL-----LDQHDQRGLGGILLEDIEEALPNSQKAVKALGDQ 188
           D    + P Y  R +  LL       +D   Q+        D+ E     ++  K   + 
Sbjct: 281 DTSIDYNPLYKERHQVQLLGRGFIAGIDLKQQKREQSRFYGDLMEKRRTLEE--KEQEEA 338

Query: 189 ILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWR------SVT-----VDSMDEEKIEEYL 237
            L   R  + K  + +    Q  +DE   + WR      S+T     + +      +  L
Sbjct: 339 RLRKLRKKEAKQRWDDRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSL 398

Query: 238 KRQGISSMQESGPKKVAPIQRRKKPASQKKR 268
               +  + + G K+  PIQR+  P   + R
Sbjct: 399 PPHILEVIDKCGYKEPTPIQRQAIPIGLQNR 429


>1VPL-A nrPDB
          Length = 256

 Score = 28.2 bits (61), Expect = 3.9,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 100 DEILDETQHLDIGLKQKQWLMTEALVNNPKIEVIDGKYAFKPKYNVRDKKALLRLLDQHD 159
           ++I D       G+ +K  L+  AL+ NP++ ++D         +V + + + ++L Q  
Sbjct: 138 EKIKDRVSTYSKGMVRK-LLIARALMVNPRLAILD---EPTSGLDVLNAREVRKILKQAS 193

Query: 160 QRGL 163
           Q GL
Sbjct: 194 QEGL 197


>3PMO-A nrPDB
          Length = 372

 Score = 27.0 bits (58), Expect = 9.0,   Method: Composition-based stats.
 Identities = 8/26 (30%), Positives = 18/26 (69%)

Query: 229 DEEKIEEYLKRQGISSMQESGPKKVA 254
            E + +  L  QG++++QE+GP +++
Sbjct: 37  AEVRGDADLPIQGLATLQEAGPAQLS 62


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.307    0.126    0.335 

Lambda     K      H
   0.267   0.0394    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,609,953
Number of Sequences: 36641
Number of extensions: 402822
Number of successful extensions: 1313
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1119
Number of HSP's gapped (non-prelim): 112
length of query: 291
length of database: 10,336,785
effective HSP length: 96
effective length of query: 195
effective length of database: 6,819,249
effective search space: 1329753555
effective search space used: 1329753555
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 58 (27.0 bits)