BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P29083 (439 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 5IYB-Q nrPDB 910 0.0 5GPY-A nrPDB 455 e-128 5FZ5-W nrPDB 117 1e-26 5OQM-W nrPDB 115 3e-26 6GYM-W nrPDB 113 1e-25 5OQJ-W nrPDB 113 1e-25 5FMF-R nrPDB 95 6e-20 4BIM-A nrPDB 31 0.94 4B7A-A nrPDB 30 1.8 5Z9S-A nrPDB 30 2.6 1Y6J-A nrPDB 29 3.1 2IUF-A nrPDB 29 3.7 3VMW-A nrPDB 28 9.3 >5IYB-Q nrPDB Length = 439 Score = 910 bits (2353), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/439 (100%), Positives = 439/439 (100%) Query: 1 MADPDVLTEVPAALKRLAKYVIRGFYGIEHALALDILIRNSCVKEEDMLELLKFDRKQLR 60 MADPDVLTEVPAALKRLAKYVIRGFYGIEHALALDILIRNSCVKEEDMLELLKFDRKQLR Sbjct: 1 MADPDVLTEVPAALKRLAKYVIRGFYGIEHALALDILIRNSCVKEEDMLELLKFDRKQLR 60 Query: 61 SVLNNLKGDKFIKCRMRVETAADGKTTRHNYYFINYRTLVNVVKYKLDHMRRRIETDERD 120 SVLNNLKGDKFIKCRMRVETAADGKTTRHNYYFINYRTLVNVVKYKLDHMRRRIETDERD Sbjct: 61 SVLNNLKGDKFIKCRMRVETAADGKTTRHNYYFINYRTLVNVVKYKLDHMRRRIETDERD 120 Query: 121 STNRASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDESAMPKKDARTLLARF 180 STNRASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDESAMPKKDARTLLARF Sbjct: 121 STNRASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDESAMPKKDARTLLARF 180 Query: 181 NEQIEPIYALLRETEDVNLAYEILEPEPTEIPALKQSKDHAATTAGAASLAGGHHREAWA 240 NEQIEPIYALLRETEDVNLAYEILEPEPTEIPALKQSKDHAATTAGAASLAGGHHREAWA Sbjct: 181 NEQIEPIYALLRETEDVNLAYEILEPEPTEIPALKQSKDHAATTAGAASLAGGHHREAWA 240 Query: 241 TKGPSYEDLYTQNVVINMDDQEDLHRASLEGKSAKERPIWLRESTVQGAYGSEDMKEGGI 300 TKGPSYEDLYTQNVVINMDDQEDLHRASLEGKSAKERPIWLRESTVQGAYGSEDMKEGGI Sbjct: 241 TKGPSYEDLYTQNVVINMDDQEDLHRASLEGKSAKERPIWLRESTVQGAYGSEDMKEGGI 300 Query: 301 DMDAFQEREEGHAGPDDNEEVMRALLIHEKKTSSAMAGSVGAAAPVTAANGSDSESETSE 360 DMDAFQEREEGHAGPDDNEEVMRALLIHEKKTSSAMAGSVGAAAPVTAANGSDSESETSE Sbjct: 301 DMDAFQEREEGHAGPDDNEEVMRALLIHEKKTSSAMAGSVGAAAPVTAANGSDSESETSE 360 Query: 361 SDDDSPPRPAAVAVHKREEDEEEDDEFEEVADDPIVMVAGRPFSYSEVSQRPELVAQMTP 420 SDDDSPPRPAAVAVHKREEDEEEDDEFEEVADDPIVMVAGRPFSYSEVSQRPELVAQMTP Sbjct: 361 SDDDSPPRPAAVAVHKREEDEEEDDEFEEVADDPIVMVAGRPFSYSEVSQRPELVAQMTP 420 Query: 421 EEKEAYIAMGQRMFEDLFE 439 EEKEAYIAMGQRMFEDLFE Sbjct: 421 EEKEAYIAMGQRMFEDLFE 439 >5GPY-A nrPDB Length = 220 Score = 455 bits (1170), Expect = e-128, Method: Compositional matrix adjust. Identities = 217/217 (100%), Positives = 217/217 (100%) Query: 1 MADPDVLTEVPAALKRLAKYVIRGFYGIEHALALDILIRNSCVKEEDMLELLKFDRKQLR 60 MADPDVLTEVPAALKRLAKYVIRGFYGIEHALALDILIRNSCVKEEDMLELLKFDRKQLR Sbjct: 4 MADPDVLTEVPAALKRLAKYVIRGFYGIEHALALDILIRNSCVKEEDMLELLKFDRKQLR 63 Query: 61 SVLNNLKGDKFIKCRMRVETAADGKTTRHNYYFINYRTLVNVVKYKLDHMRRRIETDERD 120 SVLNNLKGDKFIKCRMRVETAADGKTTRHNYYFINYRTLVNVVKYKLDHMRRRIETDERD Sbjct: 64 SVLNNLKGDKFIKCRMRVETAADGKTTRHNYYFINYRTLVNVVKYKLDHMRRRIETDERD 123 Query: 121 STNRASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDESAMPKKDARTLLARF 180 STNRASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDESAMPKKDARTLLARF Sbjct: 124 STNRASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDESAMPKKDARTLLARF 183 Query: 181 NEQIEPIYALLRETEDVNLAYEILEPEPTEIPALKQS 217 NEQIEPIYALLRETEDVNLAYEILEPEPTEIPALKQS Sbjct: 184 NEQIEPIYALLRETEDVNLAYEILEPEPTEIPALKQS 220 >5FZ5-W nrPDB Length = 482 Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 63/212 (29%), Positives = 112/212 (52%), Gaps = 3/212 (1%) Query: 14 LKRLAKYVIRGFYGIEHALALDILIRNSCVKEEDMLELLKFDRKQLRSVLNNLKGDKFIK 73 +K L K+V+RGFYG L LD ++ +S + E+D+ +LL ++ +L ++ L+ D+ I Sbjct: 9 VKNLLKFVVRGFYGGSFVLVLDAILFHSVLAEDDLKQLLSINKTELGPLIARLRSDRLIS 68 Query: 74 CRMRVETAADGKTTRHNYYFINYRTLVNVVKYKLDHMRRRIETDERDSTNRASFKCPVCS 133 + E + K+ YY++ Y ++ +K+K+ + +R++ D ++ + CP+C Sbjct: 69 IHKQREYPPNSKSVERVYYYVKYPHAIDAIKWKVHQVVQRLKDDLDKNSEPNGYMCPICL 128 Query: 134 STFTDLEANQLFDPMTGTFRCTFCHTEVEEDESAMPKKDARTLLARFNEQIEPIYALLRE 193 + +T LEA QL + F C+ C + ED+S K+ + L R +QI+PI L++ Sbjct: 129 TKYTQLEAVQLLNFDRTEFLCSLCDEPLVEDDSGKKNKEKQDKLNRLMDQIQPIIDSLKK 188 Query: 194 TEDVNLAYEILEPEPTE-IPALKQSKDHAATT 224 +D + E IP QS HAA T Sbjct: 189 IDDSRIEENTFEIALARLIPPQNQS--HAAYT 218 >5OQM-W nrPDB Length = 541 Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 102/183 (55%) Query: 14 LKRLAKYVIRGFYGIEHALALDILIRNSCVKEEDMLELLKFDRKQLRSVLNNLKGDKFIK 73 +K L K+V+RGFYG L LD ++ +S + E+D+ +LL ++ +L ++ L+ D+ I Sbjct: 9 VKNLLKFVVRGFYGGSFVLVLDAILFHSVLAEDDLKQLLSINKTELGPLIARLRSDRLIS 68 Query: 74 CRMRVETAADGKTTRHNYYFINYRTLVNVVKYKLDHMRRRIETDERDSTNRASFKCPVCS 133 + E + K+ YY++ Y ++ +K+K+ + +R++ D ++ + CP+C Sbjct: 69 IHKQREYPPNSKSVERVYYYVKYPHAIDAIKWKVHQVVQRLKDDLDKNSEPNGYMCPICL 128 Query: 134 STFTDLEANQLFDPMTGTFRCTFCHTEVEEDESAMPKKDARTLLARFNEQIEPIYALLRE 193 + +T LEA QL + F C+ C + ED+S K+ + L R +QI+PI L++ Sbjct: 129 TKYTQLEAVQLLNFDRTEFLCSLCDEPLVEDDSGKKNKEKQDKLNRLMDQIQPIIDSLKK 188 Query: 194 TED 196 +D Sbjct: 189 IDD 191 >6GYM-W nrPDB Length = 332 Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 102/183 (55%) Query: 14 LKRLAKYVIRGFYGIEHALALDILIRNSCVKEEDMLELLKFDRKQLRSVLNNLKGDKFIK 73 +K L K+V+RGFYG L LD ++ +S + E+D+ +LL ++ +L ++ L+ D+ I Sbjct: 9 VKNLLKFVVRGFYGGSFVLVLDAILFHSVLAEDDLKQLLSINKTELGPLIARLRSDRLIS 68 Query: 74 CRMRVETAADGKTTRHNYYFINYRTLVNVVKYKLDHMRRRIETDERDSTNRASFKCPVCS 133 + E + K+ YY++ Y ++ +K+K+ + +R++ D ++ + CP+C Sbjct: 69 IHKQREYPPNSKSVERVYYYVKYPHAIDAIKWKVHQVVQRLKDDLDKNSEPNGYMCPICL 128 Query: 134 STFTDLEANQLFDPMTGTFRCTFCHTEVEEDESAMPKKDARTLLARFNEQIEPIYALLRE 193 + +T LEA QL + F C+ C + ED+S K+ + L R +QI+PI L++ Sbjct: 129 TKYTQLEAVQLLNFDRTEFLCSLCDEPLVEDDSGKKNKEKQDKLNRLMDQIQPIIDSLKK 188 Query: 194 TED 196 +D Sbjct: 189 IDD 191 >5OQJ-W nrPDB Length = 586 Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 102/183 (55%) Query: 14 LKRLAKYVIRGFYGIEHALALDILIRNSCVKEEDMLELLKFDRKQLRSVLNNLKGDKFIK 73 +K L K+V+RGFYG L LD ++ +S + E+D+ +LL ++ +L ++ L+ D+ I Sbjct: 9 VKNLLKFVVRGFYGGSFVLVLDAILFHSVLAEDDLKQLLSINKTELGPLIARLRSDRLIS 68 Query: 74 CRMRVETAADGKTTRHNYYFINYRTLVNVVKYKLDHMRRRIETDERDSTNRASFKCPVCS 133 + E + K+ YY++ Y ++ +K+K+ + +R++ D ++ + CP+C Sbjct: 69 IHKQREYPPNSKSVERVYYYVKYPHAIDAIKWKVHQVVQRLKDDLDKNSEPNGYMCPICL 128 Query: 134 STFTDLEANQLFDPMTGTFRCTFCHTEVEEDESAMPKKDARTLLARFNEQIEPIYALLRE 193 + +T LEA QL + F C+ C + ED+S K+ + L R +QI+PI L++ Sbjct: 129 TKYTQLEAVQLLNFDRTEFLCSLCDEPLVEDDSGKKNKEKQDKLNRLMDQIQPIIDSLKK 188 Query: 194 TED 196 +D Sbjct: 189 IDD 191 >5FMF-R nrPDB Length = 160 Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 85/152 (55%) Query: 14 LKRLAKYVIRGFYGIEHALALDILIRNSCVKEEDMLELLKFDRKQLRSVLNNLKGDKFIK 73 +K L K+V+RGFYG L LD ++ +S + E+D+ +LL ++ +L ++ L+ D+ I Sbjct: 9 VKNLLKFVVRGFYGGSFVLVLDAILFHSVLAEDDLKQLLSINKTELGPLIARLRSDRLIS 68 Query: 74 CRMRVETAADGKTTRHNYYFINYRTLVNVVKYKLDHMRRRIETDERDSTNRASFKCPVCS 133 + E + K+ YY++ Y ++ +K+K+ + +R++ D ++ + CP+C Sbjct: 69 IHKQREYPPNSKSVERVYYYVKYPHAIDAIKWKVHQVVQRLKDDLDKNSEPNGYMCPICL 128 Query: 134 STFTDLEANQLFDPMTGTFRCTFCHTEVEEDE 165 + +T LEA QL + F C+ C + ED+ Sbjct: 129 TKYTQLEAVQLLNFDRTEFLCSLCDEPLVEDD 160 >4BIM-A nrPDB Length = 746 Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%) Query: 252 QNVVINMDDQEDLHRASLEGKSAKERPIWLRESTVQGAYGSEDMKEGGIDMDAFQER 308 + + D ++ AS G K+ P+++R STV G+ GS D D+ F R Sbjct: 136 HGIFTSYGDWSNITAASFLGAKDKQTPVFVRFSTVAGSRGSADTAR---DVHGFATR 189 >4B7A-A nrPDB Length = 719 Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust. Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%) Query: 260 DQEDLHRASLEGKSAKERPIWLRESTVQGAYGSEDMKEGGIDMDAFQER 308 D ++ AS + K+ P+++R STV G+ GS D D+ F R Sbjct: 118 DWSNITAASFLNATGKQTPVFVRFSTVAGSRGSADTAR---DVHGFATR 163 >5Z9S-A nrPDB Length = 796 Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust. Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Query: 118 ERDSTNRASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEED 164 E T +F+ PV + T D +AN++ +P G F H+ ED Sbjct: 735 EPGETKTVAFEIPVANCTIVDPDANRIVEP--GEFELLIGHSSRRED 779 >1Y6J-A nrPDB Length = 318 Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 8/60 (13%) Query: 16 RLAKYVIRGFYGIEH-ALALDILIRNSCVKEEDMLEL-------LKFDRKQLRSVLNNLK 67 R VI G YGIE A++L ++ + V+E L L+F +Q++ VLN +K Sbjct: 257 RTVGTVINGMYGIEDVAISLPSIVNSEGVQEVLQFNLTPEEEEALRFSAEQVKKVLNEVK 316 >2IUF-A nrPDB Length = 688 Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 3/49 (6%) Query: 260 DQEDLHRASLEGKSAKERPIWLRESTVQGAYGSEDMKEGGIDMDAFQER 308 D +L AS KE P++ R STV G+ GS D D+ F R Sbjct: 78 DWSNLTAASFLSAEGKETPMFTRFSTVAGSRGSADTAR---DVHGFATR 123 >3VMW-A nrPDB Length = 326 Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust. Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Query: 85 KTTRHNYYFINYRTLVNVVKYKLDHMRRRIETDERDS--TNRASFKCPVCSSTFTDLEAN 142 K T H+ YF N + V +++Y HM D D+ +R + V ++ F ++ + Sbjct: 193 KITYHHNYFNNLNSRVPLIRYADVHMFNNYFKDINDTAINSRVGARVFVENNYFDNVGSG 252 Query: 143 QLFDPMTGTFR 153 Q DP TG + Sbjct: 253 QA-DPTTGFIK 262 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 5IYB-Q nrPDB 800 0.0 5GPY-A nrPDB 368 e-102 5FZ5-W nrPDB 356 1e-98 6GYM-W nrPDB 333 6e-92 5OQJ-W nrPDB 333 6e-92 5OQM-W nrPDB 327 9e-90 5FMF-R nrPDB 283 8e-77 Sequences not found previously or not previously below threshold: 5EXI-A nrPDB 33 0.22 3O5A-B nrPDB 32 0.49 4BIM-A nrPDB 32 0.64 1UOK-A nrPDB 31 1.1 3RUW-A nrPDB 31 1.2 3IYF-A nrPDB 30 1.8 2FNQ-A nrPDB 29 3.3 1R1T-A nrPDB 29 5.2 6GYM-3 nrPDB 28 7.1 CONVERGED! >5IYB-Q nrPDB Length = 439 Score = 800 bits (2067), Expect = 0.0, Method: Composition-based stats. Identities = 439/439 (100%), Positives = 439/439 (100%) Query: 1 MADPDVLTEVPAALKRLAKYVIRGFYGIEHALALDILIRNSCVKEEDMLELLKFDRKQLR 60 MADPDVLTEVPAALKRLAKYVIRGFYGIEHALALDILIRNSCVKEEDMLELLKFDRKQLR Sbjct: 1 MADPDVLTEVPAALKRLAKYVIRGFYGIEHALALDILIRNSCVKEEDMLELLKFDRKQLR 60 Query: 61 SVLNNLKGDKFIKCRMRVETAADGKTTRHNYYFINYRTLVNVVKYKLDHMRRRIETDERD 120 SVLNNLKGDKFIKCRMRVETAADGKTTRHNYYFINYRTLVNVVKYKLDHMRRRIETDERD Sbjct: 61 SVLNNLKGDKFIKCRMRVETAADGKTTRHNYYFINYRTLVNVVKYKLDHMRRRIETDERD 120 Query: 121 STNRASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDESAMPKKDARTLLARF 180 STNRASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDESAMPKKDARTLLARF Sbjct: 121 STNRASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDESAMPKKDARTLLARF 180 Query: 181 NEQIEPIYALLRETEDVNLAYEILEPEPTEIPALKQSKDHAATTAGAASLAGGHHREAWA 240 NEQIEPIYALLRETEDVNLAYEILEPEPTEIPALKQSKDHAATTAGAASLAGGHHREAWA Sbjct: 181 NEQIEPIYALLRETEDVNLAYEILEPEPTEIPALKQSKDHAATTAGAASLAGGHHREAWA 240 Query: 241 TKGPSYEDLYTQNVVINMDDQEDLHRASLEGKSAKERPIWLRESTVQGAYGSEDMKEGGI 300 TKGPSYEDLYTQNVVINMDDQEDLHRASLEGKSAKERPIWLRESTVQGAYGSEDMKEGGI Sbjct: 241 TKGPSYEDLYTQNVVINMDDQEDLHRASLEGKSAKERPIWLRESTVQGAYGSEDMKEGGI 300 Query: 301 DMDAFQEREEGHAGPDDNEEVMRALLIHEKKTSSAMAGSVGAAAPVTAANGSDSESETSE 360 DMDAFQEREEGHAGPDDNEEVMRALLIHEKKTSSAMAGSVGAAAPVTAANGSDSESETSE Sbjct: 301 DMDAFQEREEGHAGPDDNEEVMRALLIHEKKTSSAMAGSVGAAAPVTAANGSDSESETSE 360 Query: 361 SDDDSPPRPAAVAVHKREEDEEEDDEFEEVADDPIVMVAGRPFSYSEVSQRPELVAQMTP 420 SDDDSPPRPAAVAVHKREEDEEEDDEFEEVADDPIVMVAGRPFSYSEVSQRPELVAQMTP Sbjct: 361 SDDDSPPRPAAVAVHKREEDEEEDDEFEEVADDPIVMVAGRPFSYSEVSQRPELVAQMTP 420 Query: 421 EEKEAYIAMGQRMFEDLFE 439 EEKEAYIAMGQRMFEDLFE Sbjct: 421 EEKEAYIAMGQRMFEDLFE 439 >5GPY-A nrPDB Length = 220 Score = 368 bits (944), Expect = e-102, Method: Composition-based stats. Identities = 217/217 (100%), Positives = 217/217 (100%) Query: 1 MADPDVLTEVPAALKRLAKYVIRGFYGIEHALALDILIRNSCVKEEDMLELLKFDRKQLR 60 MADPDVLTEVPAALKRLAKYVIRGFYGIEHALALDILIRNSCVKEEDMLELLKFDRKQLR Sbjct: 4 MADPDVLTEVPAALKRLAKYVIRGFYGIEHALALDILIRNSCVKEEDMLELLKFDRKQLR 63 Query: 61 SVLNNLKGDKFIKCRMRVETAADGKTTRHNYYFINYRTLVNVVKYKLDHMRRRIETDERD 120 SVLNNLKGDKFIKCRMRVETAADGKTTRHNYYFINYRTLVNVVKYKLDHMRRRIETDERD Sbjct: 64 SVLNNLKGDKFIKCRMRVETAADGKTTRHNYYFINYRTLVNVVKYKLDHMRRRIETDERD 123 Query: 121 STNRASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDESAMPKKDARTLLARF 180 STNRASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDESAMPKKDARTLLARF Sbjct: 124 STNRASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDESAMPKKDARTLLARF 183 Query: 181 NEQIEPIYALLRETEDVNLAYEILEPEPTEIPALKQS 217 NEQIEPIYALLRETEDVNLAYEILEPEPTEIPALKQS Sbjct: 184 NEQIEPIYALLRETEDVNLAYEILEPEPTEIPALKQS 220 >5FZ5-W nrPDB Length = 482 Score = 356 bits (913), Expect = 1e-98, Method: Composition-based stats. Identities = 63/212 (29%), Positives = 112/212 (52%), Gaps = 3/212 (1%) Query: 14 LKRLAKYVIRGFYGIEHALALDILIRNSCVKEEDMLELLKFDRKQLRSVLNNLKGDKFIK 73 +K L K+V+RGFYG L LD ++ +S + E+D+ +LL ++ +L ++ L+ D+ I Sbjct: 9 VKNLLKFVVRGFYGGSFVLVLDAILFHSVLAEDDLKQLLSINKTELGPLIARLRSDRLIS 68 Query: 74 CRMRVETAADGKTTRHNYYFINYRTLVNVVKYKLDHMRRRIETDERDSTNRASFKCPVCS 133 + E + K+ YY++ Y ++ +K+K+ + +R++ D ++ + CP+C Sbjct: 69 IHKQREYPPNSKSVERVYYYVKYPHAIDAIKWKVHQVVQRLKDDLDKNSEPNGYMCPICL 128 Query: 134 STFTDLEANQLFDPMTGTFRCTFCHTEVEEDESAMPKKDARTLLARFNEQIEPIYALLRE 193 + +T LEA QL + F C+ C + ED+S K+ + L R +QI+PI L++ Sbjct: 129 TKYTQLEAVQLLNFDRTEFLCSLCDEPLVEDDSGKKNKEKQDKLNRLMDQIQPIIDSLKK 188 Query: 194 TEDVNLAYEILEPEPTE-IPALKQSKDHAATT 224 +D + E IP QS HAA T Sbjct: 189 IDDSRIEENTFEIALARLIPPQNQS--HAAYT 218 >6GYM-W nrPDB Length = 332 Score = 333 bits (855), Expect = 6e-92, Method: Composition-based stats. Identities = 54/186 (29%), Positives = 103/186 (55%) Query: 14 LKRLAKYVIRGFYGIEHALALDILIRNSCVKEEDMLELLKFDRKQLRSVLNNLKGDKFIK 73 +K L K+V+RGFYG L LD ++ +S + E+D+ +LL ++ +L ++ L+ D+ I Sbjct: 9 VKNLLKFVVRGFYGGSFVLVLDAILFHSVLAEDDLKQLLSINKTELGPLIARLRSDRLIS 68 Query: 74 CRMRVETAADGKTTRHNYYFINYRTLVNVVKYKLDHMRRRIETDERDSTNRASFKCPVCS 133 + E + K+ YY++ Y ++ +K+K+ + +R++ D ++ + CP+C Sbjct: 69 IHKQREYPPNSKSVERVYYYVKYPHAIDAIKWKVHQVVQRLKDDLDKNSEPNGYMCPICL 128 Query: 134 STFTDLEANQLFDPMTGTFRCTFCHTEVEEDESAMPKKDARTLLARFNEQIEPIYALLRE 193 + +T LEA QL + F C+ C + ED+S K+ + L R +QI+PI L++ Sbjct: 129 TKYTQLEAVQLLNFDRTEFLCSLCDEPLVEDDSGKKNKEKQDKLNRLMDQIQPIIDSLKK 188 Query: 194 TEDVNL 199 +D + Sbjct: 189 IDDSRI 194 >5OQJ-W nrPDB Length = 586 Score = 333 bits (855), Expect = 6e-92, Method: Composition-based stats. Identities = 54/186 (29%), Positives = 103/186 (55%) Query: 14 LKRLAKYVIRGFYGIEHALALDILIRNSCVKEEDMLELLKFDRKQLRSVLNNLKGDKFIK 73 +K L K+V+RGFYG L LD ++ +S + E+D+ +LL ++ +L ++ L+ D+ I Sbjct: 9 VKNLLKFVVRGFYGGSFVLVLDAILFHSVLAEDDLKQLLSINKTELGPLIARLRSDRLIS 68 Query: 74 CRMRVETAADGKTTRHNYYFINYRTLVNVVKYKLDHMRRRIETDERDSTNRASFKCPVCS 133 + E + K+ YY++ Y ++ +K+K+ + +R++ D ++ + CP+C Sbjct: 69 IHKQREYPPNSKSVERVYYYVKYPHAIDAIKWKVHQVVQRLKDDLDKNSEPNGYMCPICL 128 Query: 134 STFTDLEANQLFDPMTGTFRCTFCHTEVEEDESAMPKKDARTLLARFNEQIEPIYALLRE 193 + +T LEA QL + F C+ C + ED+S K+ + L R +QI+PI L++ Sbjct: 129 TKYTQLEAVQLLNFDRTEFLCSLCDEPLVEDDSGKKNKEKQDKLNRLMDQIQPIIDSLKK 188 Query: 194 TEDVNL 199 +D + Sbjct: 189 IDDSRI 194 >5OQM-W nrPDB Length = 541 Score = 327 bits (837), Expect = 9e-90, Method: Composition-based stats. Identities = 54/186 (29%), Positives = 103/186 (55%) Query: 14 LKRLAKYVIRGFYGIEHALALDILIRNSCVKEEDMLELLKFDRKQLRSVLNNLKGDKFIK 73 +K L K+V+RGFYG L LD ++ +S + E+D+ +LL ++ +L ++ L+ D+ I Sbjct: 9 VKNLLKFVVRGFYGGSFVLVLDAILFHSVLAEDDLKQLLSINKTELGPLIARLRSDRLIS 68 Query: 74 CRMRVETAADGKTTRHNYYFINYRTLVNVVKYKLDHMRRRIETDERDSTNRASFKCPVCS 133 + E + K+ YY++ Y ++ +K+K+ + +R++ D ++ + CP+C Sbjct: 69 IHKQREYPPNSKSVERVYYYVKYPHAIDAIKWKVHQVVQRLKDDLDKNSEPNGYMCPICL 128 Query: 134 STFTDLEANQLFDPMTGTFRCTFCHTEVEEDESAMPKKDARTLLARFNEQIEPIYALLRE 193 + +T LEA QL + F C+ C + ED+S K+ + L R +QI+PI L++ Sbjct: 129 TKYTQLEAVQLLNFDRTEFLCSLCDEPLVEDDSGKKNKEKQDKLNRLMDQIQPIIDSLKK 188 Query: 194 TEDVNL 199 +D + Sbjct: 189 IDDSRI 194 Score = 34.3 bits (77), Expect = 0.12, Method: Composition-based stats. Identities = 9/26 (34%), Positives = 9/26 (34%), Gaps = 3/26 (11%) Query: 200 AYEILEPEPTE-IPALKQSKDHAATT 224 E IP QS HAA T Sbjct: 254 EENTFEIALARLIPPQNQS--HAAYT 277 >5FMF-R nrPDB Length = 160 Score = 283 bits (725), Expect = 8e-77, Method: Composition-based stats. Identities = 44/152 (28%), Positives = 85/152 (55%) Query: 14 LKRLAKYVIRGFYGIEHALALDILIRNSCVKEEDMLELLKFDRKQLRSVLNNLKGDKFIK 73 +K L K+V+RGFYG L LD ++ +S + E+D+ +LL ++ +L ++ L+ D+ I Sbjct: 9 VKNLLKFVVRGFYGGSFVLVLDAILFHSVLAEDDLKQLLSINKTELGPLIARLRSDRLIS 68 Query: 74 CRMRVETAADGKTTRHNYYFINYRTLVNVVKYKLDHMRRRIETDERDSTNRASFKCPVCS 133 + E + K+ YY++ Y ++ +K+K+ + +R++ D ++ + CP+C Sbjct: 69 IHKQREYPPNSKSVERVYYYVKYPHAIDAIKWKVHQVVQRLKDDLDKNSEPNGYMCPICL 128 Query: 134 STFTDLEANQLFDPMTGTFRCTFCHTEVEEDE 165 + +T LEA QL + F C+ C + ED+ Sbjct: 129 TKYTQLEAVQLLNFDRTEFLCSLCDEPLVEDD 160 >5EXI-A nrPDB Length = 331 Score = 33.2 bits (74), Expect = 0.22, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 13/121 (10%) Query: 67 KGDKFIKCRMRVETAADGKTTRHNYYFINYRTLVNVVKYKLDHMRRRIETDERDSTNRAS 126 +G + ++ +R +I R + +L ++ RR A Sbjct: 26 EGRRLLRLEVRNAQTP----IERKPPWIKTRARIGPEYTELKNLVRR--EGLHTVCEEAG 79 Query: 127 FKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDESAMPKKDARTLLARFNEQIEP 186 CP + D EA L T RC FC + ++ P + R R + + Sbjct: 80 --CPNIFECWEDREATFLIGGDQCTRRCDFC-----QIDTGKPAELDRDEPRRVADSVRT 132 Query: 187 I 187 + Sbjct: 133 M 133 >3O5A-B nrPDB Length = 135 Score = 32.0 bits (71), Expect = 0.49, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 27/85 (31%), Gaps = 6/85 (7%) Query: 80 TAADGKTTRHNYYFI----NYRTLVNVVKYKLDHMRRRIETDERDSTNRASFKCPVCSST 135 + K R + ++ Y+LD R + + PV + Sbjct: 23 YPTENKDIRRTRNYTMQPPTIPHKIDG--YQLDKDFNRCMFCHARTRTEETQAIPVSITH 80 Query: 136 FTDLEANQLFDPMTGTFRCTFCHTE 160 + D + N L D + CT CH Sbjct: 81 YMDRDNNVLADVSPRRYFCTQCHVP 105 >4BIM-A nrPDB Length = 746 Score = 31.6 bits (70), Expect = 0.64, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 6/56 (10%) Query: 260 DQEDLHRASLEGKSAKERPIWLRESTVQGAYGSEDMKEGGIDMDAFQER---EEGH 312 D ++ AS G K+ P+++R STV G+ GS D D+ F R +EG+ Sbjct: 144 DWSNITAASFLGAKDKQTPVFVRFSTVAGSRGSADTAR---DVHGFATRFYTDEGN 196 >1UOK-A nrPDB Length = 558 Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 20/87 (22%) Query: 209 TEIPALKQSKDHAATTAGAASLAGGHHREAWATKGPSYEDLYTQNVVINMDDQEDLHRAS 268 P ++HA T G E W T P+Y+++ + + N D ++ Sbjct: 418 ARTPMQWDDQNHAGFTTG----------EPWITVNPNYKEINVKQAIQNKDSIFYYYKKL 467 Query: 269 LEGKSAKERPIWLRESTVQGAYGSEDM 295 +E LR++ YGS D+ Sbjct: 468 IE----------LRKNNEIVVYGSYDL 484 >3RUW-A nrPDB Length = 543 Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 6/147 (4%) Query: 247 EDLYTQNVVINMDDQEDLHR---ASLEGKSAKERPIWLRESTVQGAYGSEDMKEGGIDMD 303 E L T + D+E L + S+ GK A++ L E V+ D EG +D D Sbjct: 133 ELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVD-DEGKVDKD 191 Query: 304 AFQEREEGHAGPDDNEEVMRALLIHEKKTSSAMAGSVGAAAPVTAANGSDSESETSESDD 363 + ++ A DD E+++ +L+ +++ S+ M V A + N + ET + Sbjct: 192 LIKIEKKSGASIDDT-ELIKGVLVDKERVSAQMPKKV-TDAKIALLNCAIEIKETETDAE 249 Query: 364 DSPPRPAAVAVHKREEDEEEDDEFEEV 390 PA + +E++ D E+ Sbjct: 250 IRITDPAKLMEFIEQEEKMLKDMVAEI 276 >3IYF-A nrPDB Length = 521 Score = 30.1 bits (66), Expect = 1.8, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 5/107 (4%) Query: 240 ATKGPSYEDLYTQNVVINMDDQEDLHR---ASLEGKSAKERPIWLRESTVQGAYGSEDMK 296 A + E L T + D+E L + S+ GK A++ L E V+ D Sbjct: 126 AAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVD-D 184 Query: 297 EGGIDMDAFQEREEGHAGPDDNEEVMRALLIHEKKTSSAMAGSVGAA 343 EG +D D + ++ A DD E+++ +L+ +++ S+ M V A Sbjct: 185 EGKVDKDLIKIEKKSGASIDDT-ELIKGVLVDKERVSAQMPKKVTDA 230 >2FNQ-A nrPDB Length = 699 Score = 29.3 bits (64), Expect = 3.3, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Query: 166 SAMPKKDARTLLARFNEQIEPIYALLRETEDVNLAYEILEPEPTEIP 212 +A KDA + RF +++E I +++ + NL + P IP Sbjct: 649 TAWEDKDALDAINRFQDKLEDISKKIKQRNE-NLEVPYIYLLPERIP 694 >1R1T-A nrPDB Length = 122 Score = 28.5 bits (62), Expect = 5.2, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 9/66 (13%) Query: 47 DMLELLKFDRKQLRSVLNNLKGDKFIKCRMRVETAADGKTTRHNYYFINYRTLVNVVKYK 106 D+ + + + L +L+ + + R + RH YY + +V + + Sbjct: 64 DLAQAIGVSESAVSHQLRSLRNLRLVSYRKQ---------GRHVYYQLQDHHIVALYQNA 114 Query: 107 LDHMRR 112 LDH++ Sbjct: 115 LDHLQE 120 >6GYM-3 nrPDB Length = 321 Score = 28.1 bits (61), Expect = 7.1, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 26/91 (28%), Gaps = 4/91 (4%) Query: 118 ERDSTNRASFKCPVCSS-TFTDLEANQLFDPMTGTFRCTFCHTEVEEDESAM---PKKDA 173 D CP+C + + + L +P C C + A D Sbjct: 2 LMDEYEENKDMCPICKTDRYLSPDVKFLVNPECYHRICESCVDRIFSLGPAQCPYKGCDK 61 Query: 174 RTLLARFNEQIEPIYALLRETEDVNLAYEIL 204 +F QI + +E + + + Sbjct: 62 ILRKNKFKTQIFDDVEVEKEVDIRKRVFNVF 92 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.310 0.131 0.353 Lambda K H 0.267 0.0404 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,314,320 Number of Sequences: 36641 Number of extensions: 703081 Number of successful extensions: 1877 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 35 Number of HSP's that attempted gapping in prelim test: 1701 Number of HSP's gapped (non-prelim): 150 length of query: 439 length of database: 10,336,785 effective HSP length: 100 effective length of query: 339 effective length of database: 6,672,685 effective search space: 2262040215 effective search space used: 2262040215 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 61 (28.1 bits)