BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= P29055
         (345 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

6GYK-M nrPDB                                                          712   0.0  
5IYC-M nrPDB                                                          184   7e-47
3K1F-M nrPDB                                                          147   9e-36
5WH1-A nrPDB                                                          105   3e-23
1AIS-B nrPDB                                                           73   2e-13
1RLY-A nrPDB                                                           55   4e-08
6CNF-R nrPDB                                                           42   5e-04
6F41-V nrPDB                                                           42   5e-04
3IWZ-A nrPDB                                                           29   3.2  
2M9W-A nrPDB                                                           28   5.9  

>6GYK-M nrPDB
          Length = 345

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/345 (100%), Positives = 345/345 (100%)

Query: 1   MMTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTR 60
           MMTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTR
Sbjct: 1   MMTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTR 60

Query: 61  SEWRTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGETTDMRFTKELNKAQGKNVMD 120
           SEWRTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGETTDMRFTKELNKAQGKNVMD
Sbjct: 61  SEWRTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGETTDMRFTKELNKAQGKNVMD 120

Query: 121 KKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGC 180
           KKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGC
Sbjct: 121 KKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGC 180

Query: 181 RRAEVARTFKEIQSLIHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIP 240
           RRAEVARTFKEIQSLIHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIP
Sbjct: 181 RRAEVARTFKEIQSLIHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIP 240

Query: 241 RFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQ 300
           RFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQ
Sbjct: 241 RFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQ 300

Query: 301 TLQVTEGTIKSGYKILYEHRDKLVDPQLIANGVVSLDNLPGVEKK 345
           TLQVTEGTIKSGYKILYEHRDKLVDPQLIANGVVSLDNLPGVEKK
Sbjct: 301 TLQVTEGTIKSGYKILYEHRDKLVDPQLIANGVVSLDNLPGVEKK 345


>5IYC-M nrPDB
          Length = 316

 Score =  184 bits (466), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 108/298 (36%), Positives = 168/298 (56%), Gaps = 19/298 (6%)

Query: 22  LTCPECKVYPPKI-VERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVG 80
           +TCP    +P  I VE +  GD++C  CGLV+ D+++D  SEWRTFSND     DPSRVG
Sbjct: 13  VTCPN---HPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKAT-KDPSRVG 68

Query: 81  EASNPLLDGNNLSTRIGKGETTDMRFTKELN-KAQGKNVMDKKDNEVQAAFAKITMLCDA 139
           ++ NPLL   +LST IGKG T    F +  N K Q +  M   D  +  AF +IT + D 
Sbjct: 69  DSQNPLLSDGDLSTMIGKG-TGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADR 127

Query: 140 AELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVK 199
             LP+ + D     +K  +++K+LKG++ ++I +A + I CR+  V RTFKEI ++  + 
Sbjct: 128 INLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRIS 187

Query: 200 TKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYT 259
            KE G+   +   IL+       L+   D ++      ++ RFCS+L LP QV  +A + 
Sbjct: 188 KKEIGRCFKL---ILKA------LETSVDLITTGD---FMSRFCSNLCLPKQVQMAATHI 235

Query: 260 AKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKILY 317
           A+K  E+  + G+SPI++A  +IY+         T  ++G    V + TI+  Y+++Y
Sbjct: 236 ARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIY 293


>3K1F-M nrPDB
          Length = 197

 Score =  147 bits (370), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 68/68 (100%), Positives = 68/68 (100%)

Query: 1  MMTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTR 60
          MMTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTR
Sbjct: 1  MMTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTR 60

Query: 61 SEWRTFSN 68
          SEWRTFSN
Sbjct: 61 SEWRTFSN 68


>5WH1-A nrPDB
          Length = 211

 Score =  105 bits (262), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 104/199 (52%), Gaps = 12/199 (6%)

Query: 119 MDKKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILI 178
           M   D  +  AF +IT + D   LP+ + D     +K  +++K+LKG++ ++I +A + I
Sbjct: 2   MSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYI 61

Query: 179 GCRRAEVARTFKEIQSLIHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTY 238
            CR+  V RTFKEI ++  +  KE G+   +   IL+       L    D MS       
Sbjct: 62  ACRQEGVPRTFKEICAVSRISKKEIGRCFKL---ILKALETSVDLITTGDFMS------- 111

Query: 239 IPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKV 298
             RFCS+L LP QV  +A + A+K  E+  + G+SPI++A  +IY+         T  ++
Sbjct: 112 --RFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEI 169

Query: 299 GQTLQVTEGTIKSGYKILY 317
           G    V + TI+  Y+++Y
Sbjct: 170 GDIAGVADVTIRQSYRLIY 188


>1AIS-B nrPDB
          Length = 200

 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 96/201 (47%), Gaps = 10/201 (4%)

Query: 118 VMDKKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASIL 177
           V D  +  +  A +++  +    +LP+ V++ A   Y+    +  ++G+S+ES+MAA + 
Sbjct: 1   VSDAAERNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVY 60

Query: 178 IGCRRAEVARTFKEIQSLIHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLT 237
             CR  +V RT  EI  +  V  KE G++   +   L    +  F+K  TD         
Sbjct: 61  AACRLLKVPRTLDEIADIARVDKKEIGRSYRFIARNLNLTPKKLFVK-PTD--------- 110

Query: 238 YIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAK 297
           Y+ +F   LGL  +V   A     +  +    +GKSP  +   ++Y+  LL     T  +
Sbjct: 111 YVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQRE 170

Query: 298 VGQTLQVTEGTIKSGYKILYE 318
           V +  +VTE T+++ YK L E
Sbjct: 171 VAEVARVTEVTVRNRYKELVE 191


>1RLY-A nrPDB
          Length = 60

 Score = 55.1 bits (131), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/49 (51%), Positives = 34/49 (69%), Gaps = 4/49 (8%)

Query: 22 LTCPECKVYPPKI-VERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSND 69
          +TCP    +P  I VE +  GD++C  CGLV+ D+++D  SEWRTFSND
Sbjct: 13 VTCPN---HPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSND 58


>6CNF-R nrPDB
          Length = 736

 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/200 (19%), Positives = 82/200 (41%), Gaps = 16/200 (8%)

Query: 115 GKNVMDKKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAA 174
           G + ++ ++  +  A  K+  +  A  +P+ + D A + YKL      ++G+  ++++A+
Sbjct: 69  GSSALESREATLNNARRKLRAVSYALHIPEYITDAAFQWYKLALANNFVQGRRSQNVIAS 128

Query: 175 SILIGCRRAEVARTFKEIQSLIHVKTKEFGKT-LNIMKNILRGKSEDGFLKIDTDNMSGA 233
            + + CR+ +      +  S + V     G T L ++K            K+    +  A
Sbjct: 129 CLYVACRKEKTHHMLIDFSSRLQVSVYSIGATFLKMVK------------KLHITELPLA 176

Query: 234 QNLTYIPRFCSHLGLP---MQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQ 290
               +I  F   L L    ++V   A   A++  +     G+ P  IA   I L   +  
Sbjct: 177 DPSLFIQHFAEKLDLADKKIKVVKDAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNN 236

Query: 291 IPITAAKVGQTLQVTEGTIK 310
           +  T  ++     V E T++
Sbjct: 237 LRRTHTEIVAVSHVAEETLQ 256



 Score = 40.0 bits (92), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 144 KIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKTKEF 203
           K+VKD  K A ++  D    +G+    I  A IL+ CR   + RT  EI ++ HV  +  
Sbjct: 197 KVVKDAVKLAQRMSKDW-MFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEETL 255

Query: 204 GKTLNIMKN 212
            + LN  KN
Sbjct: 256 QQRLNEFKN 264


>6F41-V nrPDB
          Length = 596

 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/200 (19%), Positives = 82/200 (41%), Gaps = 16/200 (8%)

Query: 115 GKNVMDKKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAA 174
           G + ++ ++  +  A  K+  +  A  +P+ + D A + YKL      ++G+  ++++A+
Sbjct: 69  GSSALESREATLNNARRKLRAVSYALHIPEYITDAAFQWYKLALANNFVQGRRSQNVIAS 128

Query: 175 SILIGCRRAEVARTFKEIQSLIHVKTKEFGKT-LNIMKNILRGKSEDGFLKIDTDNMSGA 233
            + + CR+ +      +  S + V     G T L ++K            K+    +  A
Sbjct: 129 CLYVACRKEKTHHMLIDFSSRLQVSVYSIGATFLKMVK------------KLHITELPLA 176

Query: 234 QNLTYIPRFCSHLGLP---MQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQ 290
               +I  F   L L    ++V   A   A++  +     G+ P  IA   I L   +  
Sbjct: 177 DPSLFIQHFAEKLDLADKKIKVVKDAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNN 236

Query: 291 IPITAAKVGQTLQVTEGTIK 310
           +  T  ++     V E T++
Sbjct: 237 LRRTHTEIVAVSHVAEETLQ 256



 Score = 40.0 bits (92), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 144 KIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKTKEF 203
           K+VKD  K A ++  D    +G+    I  A IL+ CR   + RT  EI ++ HV  +  
Sbjct: 197 KVVKDAVKLAQRMSKD-WMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEETL 255

Query: 204 GKTLNIMKN 212
            + LN  KN
Sbjct: 256 QQRLNEFKN 264


>3IWZ-A nrPDB
          Length = 230

 Score = 28.9 bits (63), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 10/88 (11%)

Query: 116 KNVMDKKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAAS 175
           K ++D      + AF  +T       + + + D +KE   + H + T    S + +   +
Sbjct: 143 KRLLDTTRKASRLAFLDVT-----DRIVRTLHDLSKEPEAMSHPQGTQLRVSRQEL---A 194

Query: 176 ILIGCRRAEVARTFKEIQS--LIHVKTK 201
            L+GC R    R  K++Q+  L+H + K
Sbjct: 195 RLVGCSREMAGRVLKKLQADGLLHARGK 222


>2M9W-A nrPDB
          Length = 63

 Score = 28.1 bits (61), Expect = 5.9,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 22 LTCPECKVYPPKIVERFSEGDVVCALCGLVL 52
          L+C  C+     +  R +EG+ VC  CGL +
Sbjct: 11 LSCANCQTTTTTLWRRNAEGEPVCNACGLYM 41


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

6GYK-M nrPDB                                                          542   e-155
5IYC-M nrPDB                                                          409   e-114
5WH1-A nrPDB                                                          256   9e-69
6CNF-R nrPDB                                                          233   1e-61
6F41-V nrPDB                                                          229   1e-60
1AIS-B nrPDB                                                          228   2e-60
3K1F-M nrPDB                                                          137   7e-33
1RLY-A nrPDB                                                           93   3e-19

Sequences not found previously or not previously below threshold:

4ROE-A nrPDB                                                           66   2e-11
1ZP2-A nrPDB                                                           36   0.025
6E8E-B nrPDB                                                           32   0.47 
4NST-B nrPDB                                                           30   1.7  
5KYJ-A nrPDB                                                           30   1.8  
4NQA-B nrPDB                                                           30   1.8  
2F00-A nrPDB                                                           30   2.0  
6N9E-15 nrPDB                                                          30   2.0  
3TTD-A nrPDB                                                           29   2.4  
5G4J-A nrPDB                                                           29   3.9  
4R12-A nrPDB                                                           28   5.1  
6EL3-D nrPDB                                                           28   6.0  
1KXU-A nrPDB                                                           27   9.7  

>6GYK-M nrPDB
          Length = 345

 Score =  542 bits (1397), Expect = e-155,   Method: Composition-based stats.
 Identities = 345/345 (100%), Positives = 345/345 (100%)

Query: 1   MMTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTR 60
           MMTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTR
Sbjct: 1   MMTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTR 60

Query: 61  SEWRTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGETTDMRFTKELNKAQGKNVMD 120
           SEWRTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGETTDMRFTKELNKAQGKNVMD
Sbjct: 61  SEWRTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGETTDMRFTKELNKAQGKNVMD 120

Query: 121 KKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGC 180
           KKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGC
Sbjct: 121 KKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGC 180

Query: 181 RRAEVARTFKEIQSLIHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIP 240
           RRAEVARTFKEIQSLIHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIP
Sbjct: 181 RRAEVARTFKEIQSLIHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIP 240

Query: 241 RFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQ 300
           RFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQ
Sbjct: 241 RFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQ 300

Query: 301 TLQVTEGTIKSGYKILYEHRDKLVDPQLIANGVVSLDNLPGVEKK 345
           TLQVTEGTIKSGYKILYEHRDKLVDPQLIANGVVSLDNLPGVEKK
Sbjct: 301 TLQVTEGTIKSGYKILYEHRDKLVDPQLIANGVVSLDNLPGVEKK 345


>5IYC-M nrPDB
          Length = 316

 Score =  409 bits (1050), Expect = e-114,   Method: Composition-based stats.
 Identities = 108/298 (36%), Positives = 165/298 (55%), Gaps = 19/298 (6%)

Query: 22  LTCPECKVYPPKI-VERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVG 80
           +TCP    +P  I VE +  GD++C  CGLV+ D+++D  SEWRTFSND     DPSRVG
Sbjct: 13  VTCPN---HPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKAT-KDPSRVG 68

Query: 81  EASNPLLDGNNLSTRIGKGETTDMRFTKELN-KAQGKNVMDKKDNEVQAAFAKITMLCDA 139
           ++ NPLL   +LST IGKG T    F +  N K Q +  M   D  +  AF +IT + D 
Sbjct: 69  DSQNPLLSDGDLSTMIGKG-TGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADR 127

Query: 140 AELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVK 199
             LP+ + D     +K  +++K+LKG++ ++I +A + I CR+  V RTFKEI ++  + 
Sbjct: 128 INLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRIS 187

Query: 200 TKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYT 259
            KE G+   +   IL+       L    D         ++ RFCS+L LP QV  +A + 
Sbjct: 188 KKEIGRCFKL---ILKALETSVDLITTGD---------FMSRFCSNLCLPKQVQMAATHI 235

Query: 260 AKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKILY 317
           A+K  E+  + G+SPI++A  +IY+         T  ++G    V + TI+  Y+++Y
Sbjct: 236 ARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIY 293



 Score = 56.7 bits (135), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 2/94 (2%)

Query: 239 IPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKV 298
           I      + LP  +        K+  E K + G++   IA   +Y+      +P T  ++
Sbjct: 121 ITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEI 180

Query: 299 GQTLQVTEGTIKSGYKILYEHRDKLVDPQLIANG 332
               ++++  I   +K++ +  +  VD  LI  G
Sbjct: 181 CAVSRISKKEIGRCFKLILKALETSVD--LITTG 212


>5WH1-A nrPDB
          Length = 211

 Score =  256 bits (654), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 61/200 (30%), Positives = 104/200 (52%), Gaps = 12/200 (6%)

Query: 118 VMDKKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASIL 177
            M   D  +  AF +IT + D   LP+ + D     +K  +++K+LKG++ ++I +A + 
Sbjct: 1   SMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLY 60

Query: 178 IGCRRAEVARTFKEIQSLIHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLT 237
           I CR+  V RTFKEI ++  +  KE G+   +   IL+       L    D         
Sbjct: 61  IACRQEGVPRTFKEICAVSRISKKEIGRCFKL---ILKALETSVDLITTGD--------- 108

Query: 238 YIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAK 297
           ++ RFCS+L LP QV  +A + A+K  E+  + G+SPI++A  +IY+         T  +
Sbjct: 109 FMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKE 168

Query: 298 VGQTLQVTEGTIKSGYKILY 317
           +G    V + TI+  Y+++Y
Sbjct: 169 IGDIAGVADVTIRQSYRLIY 188



 Score = 56.3 bits (134), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 2/94 (2%)

Query: 239 IPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKV 298
           I      + LP  +        K+  E K + G++   IA   +Y+      +P T  ++
Sbjct: 16  ITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEI 75

Query: 299 GQTLQVTEGTIKSGYKILYEHRDKLVDPQLIANG 332
               ++++  I   +K++ +  +  VD  LI  G
Sbjct: 76  CAVSRISKKEIGRCFKLILKALETSVD--LITTG 107


>6CNF-R nrPDB
          Length = 736

 Score =  233 bits (593), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 52/299 (17%), Positives = 105/299 (35%), Gaps = 46/299 (15%)

Query: 24  CPECKVYPPKIVERFSEG--DVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGE 81
           C  C  +  +     S    D+VC  CG+V  D  + +   +   S              
Sbjct: 4   CKNC--HGTEFERDLSNANNDLVCKACGVVSEDNPIVSEVTFGETSAGAAVVQ------- 54

Query: 82  ASNPLLDGNNLSTRIGKGETTDMRFTKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAE 141
                       + IG G++             G + ++ ++  +  A  K+  +  A  
Sbjct: 55  -----------GSFIGAGQSHAA--------FGGSSALESREATLNNARRKLRAVSYALH 95

Query: 142 LPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKTK 201
           +P+ + D A + YKL      ++G+  ++++A+ + + CR+ +      +  S + V   
Sbjct: 96  IPEYITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLIDFSSRLQVSVY 155

Query: 202 EFGKTL-NIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLP---MQVTTSAE 257
             G T   ++K            K+    +  A    +I  F   L L    ++V   A 
Sbjct: 156 SIGATFLKMVK------------KLHITELPLADPSLFIQHFAEKLDLADKKIKVVKDAV 203

Query: 258 YTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKIL 316
             A++  +     G+ P  IA   I L   +  +  T  ++     V E T++      
Sbjct: 204 KLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEETLQQRLNEF 262



 Score = 45.1 bits (105), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 80/220 (36%), Gaps = 18/220 (8%)

Query: 126 VQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEV 185
           +  A  KI ++ DA +L + +   +K+           +G+    I  A IL+ CR   +
Sbjct: 189 LDLADKKIKVVKDAVKLAQRM---SKDW--------MFEGRRPAGIAGACILLACRMNNL 237

Query: 186 ARTFKEIQSLIHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIP----- 240
            RT  EI ++ HV  +   + LN  KN    K      + +      A+  +++      
Sbjct: 238 RRTHTEIVAVSHVAEETLQQRLNEFKNTKAAKLSVQKFRENDVEDGEARPPSFVKNRKKE 297

Query: 241 -RFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVG 299
            +    L       TS E    K   + ++ G+  ++   V  YL     +      ++ 
Sbjct: 298 RKIKDSLDKEEMFQTS-EEALNKNPILTQVLGEQELSSKEVLFYLKQFSERRARVVERIK 356

Query: 300 QTLQVTEGTIKSGYKILYEHRDKLVDPQLIANGVVSLDNL 339
            T  +    I          + KL +    +  V +L N+
Sbjct: 357 ATNGIDGENIYHEGSENETRKRKLSEAMPWSGIVPTLQNI 396



 Score = 29.7 bits (65), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 4/87 (4%)

Query: 246 LGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVT 305
           L +P  +T +A    K       + G+    +    +Y+     +           LQV+
Sbjct: 94  LHIPEYITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLIDFSSRLQVS 153

Query: 306 EGTIKSGY----KILYEHRDKLVDPQL 328
             +I + +    K L+     L DP L
Sbjct: 154 VYSIGATFLKMVKKLHITELPLADPSL 180


>6F41-V nrPDB
          Length = 596

 Score =  229 bits (584), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 100/279 (35%), Gaps = 42/279 (15%)

Query: 42  DVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGET 101
           D+VC  CG+V  D  + +   +   S                          + IG G++
Sbjct: 22  DLVCKACGVVSEDNPIVSEVTFGETSAGAAVVQ------------------GSFIGAGQS 63

Query: 102 TDMRFTKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEK 161
                        G + ++ ++  +  A  K+  +  A  +P+ + D A + YKL     
Sbjct: 64  HAA--------FGGSSALESREATLNNARRKLRAVSYALHIPEYITDAAFQWYKLALANN 115

Query: 162 TLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKTKEFGKTL-NIMKNILRGKSED 220
            ++G+  ++++A+ + + CR+ +      +  S + V     G T   ++K         
Sbjct: 116 FVQGRRSQNVIASCLYVACRKEKTHHMLIDFSSRLQVSVYSIGATFLKMVK--------- 166

Query: 221 GFLKIDTDNMSGAQNLTYIPRFCSHLGLP---MQVTTSAEYTAKKCKEIKEIAGKSPITI 277
              K+    +  A    +I  F   L L    ++V   A   A++  +     G+ P  I
Sbjct: 167 ---KLHITELPLADPSLFIQHFAEKLDLADKKIKVVKDAVKLAQRMSKDWMFEGRRPAGI 223

Query: 278 AVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKIL 316
           A   I L   +  +  T  ++     V E T++      
Sbjct: 224 AGACILLACRMNNLRRTHTEIVAVSHVAEETLQQRLNEF 262



 Score = 43.6 bits (101), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 70/190 (36%), Gaps = 18/190 (9%)

Query: 126 VQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEV 185
           +  A  KI ++ DA +L + +   +K+           +G+    I  A IL+ CR   +
Sbjct: 189 LDLADKKIKVVKDAVKLAQRM---SKDW--------MFEGRRPAGIAGACILLACRMNNL 237

Query: 186 ARTFKEIQSLIHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIP----- 240
            RT  EI ++ HV  +   + LN  KN    K      + +      A+  +++      
Sbjct: 238 RRTHTEIVAVSHVAEETLQQRLNEFKNTKAAKLSVQKFRENDVEDGEARPPSFVKNRKKE 297

Query: 241 -RFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVG 299
            +    L       TS E    K   + ++ G+  ++   V  YL     +      ++ 
Sbjct: 298 RKIKDSLDKEEMFQTS-EEALNKNPILTQVLGEQELSSKEVLFYLKQFSERRARVVERIK 356

Query: 300 QTLQVTEGTI 309
            T  +    I
Sbjct: 357 ATNGIDGENI 366



 Score = 29.4 bits (64), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 4/87 (4%)

Query: 246 LGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVT 305
           L +P  +T +A    K       + G+    +    +Y+     +           LQV+
Sbjct: 94  LHIPEYITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLIDFSSRLQVS 153

Query: 306 EGTIKSGY----KILYEHRDKLVDPQL 328
             +I + +    K L+     L DP L
Sbjct: 154 VYSIGATFLKMVKKLHITELPLADPSL 180


>1AIS-B nrPDB
          Length = 200

 Score =  228 bits (582), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 53/201 (26%), Positives = 94/201 (46%), Gaps = 10/201 (4%)

Query: 118 VMDKKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASIL 177
           V D  +  +  A +++  +    +LP+ V++ A   Y+    +  ++G+S+ES+MAA + 
Sbjct: 1   VSDAAERNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVY 60

Query: 178 IGCRRAEVARTFKEIQSLIHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLT 237
             CR  +V RT  EI  +  V  KE G++   +   L    +  F+K             
Sbjct: 61  AACRLLKVPRTLDEIADIARVDKKEIGRSYRFIARNLNLTPKKLFVK----------PTD 110

Query: 238 YIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAK 297
           Y+ +F   LGL  +V   A     +  +    +GKSP  +   ++Y+  LL     T  +
Sbjct: 111 YVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQRE 170

Query: 298 VGQTLQVTEGTIKSGYKILYE 318
           V +  +VTE T+++ YK L E
Sbjct: 171 VAEVARVTEVTVRNRYKELVE 191



 Score = 43.6 bits (101), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 30/85 (35%)

Query: 133 ITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEI 192
           +    D   L + V+  A E     +      GKS   ++AA++ I        RT +E+
Sbjct: 112 VNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREV 171

Query: 193 QSLIHVKTKEFGKTLNIMKNILRGK 217
             +  V           +   L+ K
Sbjct: 172 AEVARVTEVTVRNRYKELVEKLKIK 196


>3K1F-M nrPDB
          Length = 197

 Score =  137 bits (345), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 68/68 (100%), Positives = 68/68 (100%)

Query: 1  MMTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTR 60
          MMTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTR
Sbjct: 1  MMTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTR 60

Query: 61 SEWRTFSN 68
          SEWRTFSN
Sbjct: 61 SEWRTFSN 68


>1RLY-A nrPDB
          Length = 60

 Score = 92.5 bits (228), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 4/51 (7%)

Query: 22 LTCPECKVYPPKI-VERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDH 71
          +TCP    +P  I VE +  GD++C  CGLV+ D+++D  SEWRTFSND  
Sbjct: 13 VTCPN---HPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKA 60


>4ROE-A nrPDB
          Length = 360

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 61/173 (35%), Gaps = 9/173 (5%)

Query: 120 DKKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMES---IMAASI 176
           ++     Q    ++  LC   +LP   +D A   Y+  +    ++   ++    ++   +
Sbjct: 4   EQVSRSQQRGLRRVRDLCRVLQLPPTFEDTAVAYYQQAYRHSGIRAARLQKKEVLVGCCV 63

Query: 177 LIGCRRAEVARTFKEIQSLIHVKTKEFGKTLNIMKNILRGKSEDG----FLKIDTDNMSG 232
           LI CR+     T   I +L++     F  T   +  +L            +K    +   
Sbjct: 64  LITCRQHNWPLTMGAICTLLYADLDVFSSTYMQIVKLLGLDVPSLCLAELVKTYCSSFKL 123

Query: 233 AQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLN 285
            Q    +P    ++    ++ +      +   E   + G+ P+ +   + +L 
Sbjct: 124 FQASPSVP--AKYVEDKEKMLSRTMQLVELANETWLVTGRHPLPVITAATFLA 174


>1ZP2-A nrPDB
          Length = 235

 Score = 35.9 bits (81), Expect = 0.025,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 131 AKITMLCDAAELPKIVKDCAKEAYKL-CHDEKTLKGKSMESIMAASILIGCRRAEVARTF 189
             +    D   L + V   A    +     +   KG S+E+++A  I + C+  E     
Sbjct: 33  KVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHI 92

Query: 190 KEIQS 194
           + I +
Sbjct: 93  RTICN 97


>6E8E-B nrPDB
          Length = 517

 Score = 31.7 bits (70), Expect = 0.47,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 77/213 (36%), Gaps = 22/213 (10%)

Query: 138 DAAELPKIVK---DCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEV------ART 188
               LPK      +   +  K       +   S E      + +   + ++         
Sbjct: 282 YRRVLPKNPDKHLEAGCDLLKQAFARAAI--LSNEKFRGVRLYVSENQLKITANNPEQEE 339

Query: 189 FKEIQSLIHVKTK-EFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLG 247
            +EI  + +   + E G  ++ + ++L     +    + TD++S  Q      +  +++ 
Sbjct: 340 AEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVV 399

Query: 248 LPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTL----- 302
           +PM++  S        ++ +   G++P+    + I L + +     +A +  Q+      
Sbjct: 400 MPMRLVDSGASGGSWLRQAQLTPGEAPVCAQPLLIPLRLKVSAEEKSALEKAQSALAELG 459

Query: 303 -----QVTEGTIKSGYKILYEHRDKLVDPQLIA 330
                     TI++    L +   +++ P+LI 
Sbjct: 460 IDFQSDAQHVTIRAVPLPLRQQNLQILIPELIG 492


>4NST-B nrPDB
          Length = 268

 Score = 29.7 bits (65), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 36/122 (29%), Gaps = 7/122 (5%)

Query: 173 AASILIGCRRAEVARTFKEI--QSLIHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNM 230
           A  + +  +  E  +  K+I   +   +   +FG+  +  K  +          I  D +
Sbjct: 98  ACCLFLAGKVEETPKKCKDIIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFD-L 156

Query: 231 SGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKS----PITIAVVSIYLNI 286
                  ++ ++   L             A            S    P  IAV  +YL  
Sbjct: 157 QVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAG 216

Query: 287 LL 288
            L
Sbjct: 217 RL 218


>5KYJ-A nrPDB
          Length = 287

 Score = 29.7 bits (65), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 1/66 (1%)

Query: 66  FSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGETTDMRFTKELNKAQGKNVMDKKDNE 125
           FS D  N  +P RV     P ++     TRI K     +RF + L K      +    +E
Sbjct: 186 FSADRPNVQEPGRVEALQQPYVEALLSYTRI-KRPQDQLRFPRMLMKLVSLRTLSSVHSE 244

Query: 126 VQAAFA 131
              A  
Sbjct: 245 QVFALR 250


>4NQA-B nrPDB
          Length = 391

 Score = 29.7 bits (65), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 1/66 (1%)

Query: 66  FSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGETTDMRFTKELNKAQGKNVMDKKDNE 125
           FS D  N  +P RV     P ++     TRI K     +RF + L K      +    +E
Sbjct: 309 FSADRPNVQEPGRVEALQQPYVEALLSYTRI-KRPQDQLRFPRMLMKLVSLRTLSSVHSE 367

Query: 126 VQAAFA 131
              A  
Sbjct: 368 QVFALR 373


>2F00-A nrPDB
          Length = 491

 Score = 29.7 bits (65), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 58  DTRSEWRTFSN----DDHNGDDPSRVGEASNPLLDGNNLSTRIGKGETT 102
           D+RS  RT       D     DP+RV E   P+L GN+L    G G   
Sbjct: 421 DSRSLCRTIRGRGKIDPILVPDPARVAEMLAPVLTGNDLILVQGAGNIG 469


>6N9E-15 nrPDB
          Length = 60

 Score = 29.7 bits (65), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 8/39 (20%)

Query: 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDT 59
          ++ CPECK   P           VC  CG     K+++ 
Sbjct: 30 LVPCPECKAMKPP--------HTVCPECGYYAGRKVLEV 60


>3TTD-A nrPDB
          Length = 658

 Score = 29.4 bits (64), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 12/27 (44%), Gaps = 1/27 (3%)

Query: 24 CPEC-KVYPPKIVERFSEGDVVCALCG 49
          CP C K Y   +  RF    V C  CG
Sbjct: 70 CPACDKEYRDPLDRRFHAQPVACPECG 96


>5G4J-A nrPDB
          Length = 446

 Score = 28.6 bits (62), Expect = 3.9,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 6/77 (7%)

Query: 96  IGKGETTDMRFTKEL------NKAQGKNVMDKKDNEVQAAFAKITMLCDAAELPKIVKDC 149
           IG   TT     +        N   G  V       V     +  ++  A +L K ++  
Sbjct: 289 IGAVVTTAELLDEFGRHNMFFNTFAGNPVSSAAGLAVLRYMDQEDLMAKADQLGKYIRKR 348

Query: 150 AKEAYKLCHDEKTLKGK 166
            +   +   +  +++G+
Sbjct: 349 LENIAQRSGNVGSVRGR 365


>4R12-A nrPDB
          Length = 593

 Score = 28.2 bits (61), Expect = 5.1,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 21/50 (42%)

Query: 64  RTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGETTDMRFTKELNKA 113
           +T+++D     DP R   A    ++   +ST I   +    +  K L K 
Sbjct: 291 KTYNSDKSKCIDPPRADLAFQTQINFTKISTIIELNQIGRAQLDKNLGKY 340


>6EL3-D nrPDB
          Length = 381

 Score = 28.2 bits (61), Expect = 6.0,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 30/92 (32%), Gaps = 14/92 (15%)

Query: 99  GETTDMRFTKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCH 158
           G   D  FT+++ + Q +N    +++ +     KI  +  +   P ++       Y L  
Sbjct: 151 GPRHDPPFTEDMPRLQIQNFYYTQEDILFEEIKKIETVTWSIHRPNMIF--GFSPYSL-- 206

Query: 159 DEKTLKGKSMESIMAASILIG-CRRAEVARTF 189
                    M  +    +    C+       F
Sbjct: 207 ---------MNIVGTLCVYAAICKHEGSPLLF 229


>1KXU-A nrPDB
          Length = 333

 Score = 27.4 bits (59), Expect = 9.7,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 16/43 (37%)

Query: 142 LPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAE 184
           +P+ V   A   +K  +   ++       IM     + C+  E
Sbjct: 85  MPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDE 127


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.311    0.126    0.321 

Lambda     K      H
   0.267   0.0386    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,357,857
Number of Sequences: 36641
Number of extensions: 412879
Number of successful extensions: 1191
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1124
Number of HSP's gapped (non-prelim): 49
length of query: 345
length of database: 10,336,785
effective HSP length: 98
effective length of query: 247
effective length of database: 6,745,967
effective search space: 1666253849
effective search space used: 1666253849
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 59 (27.4 bits)