BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= P28320
         (278 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

5LJ5-D nrPDB                                                          570   e-163
5YZG-Y nrPDB                                                          115   3e-26
3IFZ-A nrPDB                                                           29   2.6  
4M60-A nrPDB                                                           28   5.6  
6FSZ-KK nrPDB                                                          27   9.4  

>5LJ5-D nrPDB
          Length = 278

 Score =  570 bits (1470), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 278/278 (100%), Positives = 278/278 (100%)

Query: 1   MSERKAINKYYPPDYNPLEAEKLSRKMAKKLKTMNKSHASIRLMTPFSMRCLECNEYIPK 60
           MSERKAINKYYPPDYNPLEAEKLSRKMAKKLKTMNKSHASIRLMTPFSMRCLECNEYIPK
Sbjct: 1   MSERKAINKYYPPDYNPLEAEKLSRKMAKKLKTMNKSHASIRLMTPFSMRCLECNEYIPK 60

Query: 61  SRKFNGKKELLKEKYLDSIKIYRLTISCPRCANSIAFRTDPGNSDYVMEVGGVRNYVPQK 120
           SRKFNGKKELLKEKYLDSIKIYRLTISCPRCANSIAFRTDPGNSDYVMEVGGVRNYVPQK
Sbjct: 61  SRKFNGKKELLKEKYLDSIKIYRLTISCPRCANSIAFRTDPGNSDYVMEVGGVRNYVPQK 120

Query: 121 PNDDLNAKTAVESIDETLQRLVREKEMEQNEKMGIKEQADDKMDLLEKRLAKIQQEQEDD 180
           PNDDLNAKTAVESIDETLQRLVREKEMEQNEKMGIKEQADDKMDLLEKRLAKIQQEQEDD
Sbjct: 121 PNDDLNAKTAVESIDETLQRLVREKEMEQNEKMGIKEQADDKMDLLEKRLAKIQQEQEDD 180

Query: 181 EELENLRKKNLEMSQRAEMINRSKHAQQEKAVTTDDLDNLVDQVFDNHRQRTNKPGNNND 240
           EELENLRKKNLEMSQRAEMINRSKHAQQEKAVTTDDLDNLVDQVFDNHRQRTNKPGNNND
Sbjct: 181 EELENLRKKNLEMSQRAEMINRSKHAQQEKAVTTDDLDNLVDQVFDNHRQRTNKPGNNND 240

Query: 241 EKRTPLFNPTSTKGKIQKKSSVRTNPLGIVIKRGKSLK 278
           EKRTPLFNPTSTKGKIQKKSSVRTNPLGIVIKRGKSLK
Sbjct: 241 EKRTPLFNPTSTKGKIQKKSSVRTNPLGIVIKRGKSLK 278


>5YZG-Y nrPDB
          Length = 323

 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 54/116 (46%), Positives = 73/116 (62%), Gaps = 8/116 (6%)

Query: 1   MSERKAINKYYPPDYNPLEAEKLSRKMAKKLKTMNKSHASIRLMTPFSMRCLECNEYIPK 60
           MSERK +NKYYPPD++P +  KL  K+ K  + +      +RLM PF+MRC  C EYI K
Sbjct: 1   MSERKVLNKYYPPDFDPSKIPKL--KLPKDRQYV------VRLMAPFNMRCKTCGEYIYK 52

Query: 61  SRKFNGKKELLKEKYLDSIKIYRLTISCPRCANSIAFRTDPGNSDYVMEVGGVRNY 116
            +KFN +KE ++ +    + I+R  I C RC   I F+TDP N+DY ME G  RN+
Sbjct: 53  GKKFNARKETVQNEVYLGLPIFRFYIKCTRCLAEITFKTDPENTDYTMEHGATRNF 108


>3IFZ-A nrPDB
          Length = 508

 Score = 28.9 bits (63), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 24/109 (22%), Positives = 58/109 (53%), Gaps = 15/109 (13%)

Query: 130 AVESIDETLQRLVREKEMEQNEKMGIKE-------QADDKMDLLEKRLAKIQQEQEDDEE 182
           A++++DE +  L+R  E     + G+ E       QA   +D+  +RLA +++++     
Sbjct: 397 ALDALDEVIA-LIRASETVDIARAGLIELLDIDEIQAQAILDMQLRRLAALERQRI---- 451

Query: 183 LENLRKKNLEMSQRAEMINRSKHAQQEKAVTTDDLDNLVDQVFDNHRQR 231
           +++L K   E++   +++ +    ++++ +  D+L  +VD+  D+ R R
Sbjct: 452 IDDLAKIEAEIADLEDILAKP---ERQRGIVRDELAEIVDRHGDDRRTR 497


>4M60-A nrPDB
          Length = 418

 Score = 27.7 bits (60), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 102 GNSDYVMEVGGVRNYVPQKPNDDLNAKTAVESIDET-LQRLVREKEMEQNEKMGIKEQAD 160
           GN+D +  +G  R    ++   DL  +TA+  +D+  + R +R  + E  ++ G +  A 
Sbjct: 336 GNADMLQGLGVARKLATEEATADLLRETALALVDDPEVARRLRRIQAEMAQEGGTRRAA- 394

Query: 161 DKMDLLEKRLAKIQQEQE 178
              DL+E  L    + QE
Sbjct: 395 ---DLIEAELPARHERQE 409


>6FSZ-KK nrPDB
          Length = 733

 Score = 26.9 bits (58), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 176 EQEDDEELENLRKKNLEMSQRAEMINRSKHAQQEKAVTTDDLDNLVDQVFDNHRQRTNKP 235
           E ++ ++L  L+KKN++  Q A    + K   ++ AV    + N++          +NKP
Sbjct: 647 EIDNLDDLVVLKKKNIQKKQPA----KEKGVTEKDAVDYSKIPNIL----------SNKP 692

Query: 236 GNNNDEKRTPLFNPTST 252
           G NN +++   F+P+S+
Sbjct: 693 GQNNRQQKKRRFDPSSS 709


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

5LJ5-D nrPDB                                                          471   e-133
5YZG-Y nrPDB                                                          190   6e-49

Sequences not found previously or not previously below threshold:

6FSZ-KK nrPDB                                                          34   0.085
3JA6-G nrPDB                                                           30   0.78 
5VY8-A nrPDB                                                           30   0.97 
6OD8-A nrPDB                                                           30   1.2  
6OKK-c nrPDB                                                           29   2.1  
5A29-A nrPDB                                                           29   2.7  
6D6S-A nrPDB                                                           29   2.8  
4GXP-A nrPDB                                                           28   4.5  
2CBU-A nrPDB                                                           28   4.5  
4RFX-A nrPDB                                                           28   5.0  
2QA7-A nrPDB                                                           28   5.5  
3JBN-3 nrPDB                                                           28   5.6  
4OXD-A nrPDB                                                           27   6.3  
4NT9-B nrPDB                                                           27   6.3  
5WWL-M nrPDB                                                           27   7.4  
4EFA-E nrPDB                                                           27   9.4  


CONVERGED!
>5LJ5-D nrPDB
          Length = 278

 Score =  471 bits (1213), Expect = e-133,   Method: Composition-based stats.
 Identities = 278/278 (100%), Positives = 278/278 (100%)

Query: 1   MSERKAINKYYPPDYNPLEAEKLSRKMAKKLKTMNKSHASIRLMTPFSMRCLECNEYIPK 60
           MSERKAINKYYPPDYNPLEAEKLSRKMAKKLKTMNKSHASIRLMTPFSMRCLECNEYIPK
Sbjct: 1   MSERKAINKYYPPDYNPLEAEKLSRKMAKKLKTMNKSHASIRLMTPFSMRCLECNEYIPK 60

Query: 61  SRKFNGKKELLKEKYLDSIKIYRLTISCPRCANSIAFRTDPGNSDYVMEVGGVRNYVPQK 120
           SRKFNGKKELLKEKYLDSIKIYRLTISCPRCANSIAFRTDPGNSDYVMEVGGVRNYVPQK
Sbjct: 61  SRKFNGKKELLKEKYLDSIKIYRLTISCPRCANSIAFRTDPGNSDYVMEVGGVRNYVPQK 120

Query: 121 PNDDLNAKTAVESIDETLQRLVREKEMEQNEKMGIKEQADDKMDLLEKRLAKIQQEQEDD 180
           PNDDLNAKTAVESIDETLQRLVREKEMEQNEKMGIKEQADDKMDLLEKRLAKIQQEQEDD
Sbjct: 121 PNDDLNAKTAVESIDETLQRLVREKEMEQNEKMGIKEQADDKMDLLEKRLAKIQQEQEDD 180

Query: 181 EELENLRKKNLEMSQRAEMINRSKHAQQEKAVTTDDLDNLVDQVFDNHRQRTNKPGNNND 240
           EELENLRKKNLEMSQRAEMINRSKHAQQEKAVTTDDLDNLVDQVFDNHRQRTNKPGNNND
Sbjct: 181 EELENLRKKNLEMSQRAEMINRSKHAQQEKAVTTDDLDNLVDQVFDNHRQRTNKPGNNND 240

Query: 241 EKRTPLFNPTSTKGKIQKKSSVRTNPLGIVIKRGKSLK 278
           EKRTPLFNPTSTKGKIQKKSSVRTNPLGIVIKRGKSLK
Sbjct: 241 EKRTPLFNPTSTKGKIQKKSSVRTNPLGIVIKRGKSLK 278


>5YZG-Y nrPDB
          Length = 323

 Score =  190 bits (482), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 70/190 (36%), Positives = 103/190 (54%), Gaps = 29/190 (15%)

Query: 1   MSERKAINKYYPPDYNPLEAEKLSRKMAKKLKTMNKSHASIRLMTPFSMRCLECNEYIPK 60
           MSERK +NKYYPPD++P +  KL  K+ K  + +      +RLM PF+MRC  C EYI K
Sbjct: 1   MSERKVLNKYYPPDFDPSKIPKL--KLPKDRQYV------VRLMAPFNMRCKTCGEYIYK 52

Query: 61  SRKFNGKKELLKEKYLDSIKIYRLTISCPRCANSIAFRTDPGNSDYVMEVGGVRNYVPQK 120
            +KFN +KE ++ +    + I+R  I C RC   I F+TDP N+DY ME G  RN+    
Sbjct: 53  GKKFNARKETVQNEVYLGLPIFRFYIKCTRCLAEITFKTDPENTDYTMEHGATRNF---- 108

Query: 121 PNDDLNAKTAVESIDETLQRLVREKEMEQNEKMGIKEQADDKMDLLEKRLAKIQQEQEDD 180
                    A + ++E  +R+ +E+E          E+ ++ M +LE R    + E E  
Sbjct: 109 --------QAEKLLEEEEKRVQKERE---------DEELNNPMKVLENRTKDSKLEMEVL 151

Query: 181 EELENLRKKN 190
           E L+ L+  N
Sbjct: 152 ENLQELKDLN 161


>6FSZ-KK nrPDB
          Length = 733

 Score = 33.9 bits (76), Expect = 0.085,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 176 EQEDDEELENLRKKNLEMSQRAEMINRSKHAQQEKAVTTDDLDNLVDQVFDNHRQRTNKP 235
           E ++ ++L  L+KKN++  Q A    + K   ++ AV    + N++          +NKP
Sbjct: 647 EIDNLDDLVVLKKKNIQKKQPA----KEKGVTEKDAVDYSKIPNIL----------SNKP 692

Query: 236 GNNNDEKRTPLFNPTST 252
           G NN +++   F+P+S+
Sbjct: 693 GQNNRQQKKRRFDPSSS 709


>3JA6-G nrPDB
          Length = 309

 Score = 30.5 bits (67), Expect = 0.78,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 37/72 (51%)

Query: 126 NAKTAVESIDETLQRLVREKEMEQNEKMGIKEQADDKMDLLEKRLAKIQQEQEDDEELEN 185
           + +T   S+ E+++ + +  E   N+ +GI ++ D+    +E   A +Q+     EE+ +
Sbjct: 6   DVQTETFSVAESIEEISKANEEITNQLLGISKEMDNISTRIESISASVQETTAGSEEISS 65

Query: 186 LRKKNLEMSQRA 197
             K   + +Q+A
Sbjct: 66  ATKNIADSAQQA 77


>5VY8-A nrPDB
          Length = 908

 Score = 30.1 bits (66), Expect = 0.97,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 10/101 (9%)

Query: 130 AVESIDETLQRLVREKEMEQNEKMGIKEQADDKMDLLEKRLAKIQQEQEDDEELENLRKK 189
           A +S  E L    R+ ++ Q E   ++   D      ++     Q+E    EELE LR++
Sbjct: 406 ARDSKPEELDSKERQLQLIQVEIKALERDEDADSTTKDRLKLARQKEASLQEELEPLRQR 465

Query: 190 NLEMSQRAEMINRSKHAQQEKAVTTDDLDNLVDQVFDNHRQ 230
                      N  KH  +E       LD L ++  D  R+
Sbjct: 466 ----------YNEEKHGHEELTQAKKKLDELENKALDAERR 496


>6OD8-A nrPDB
          Length = 558

 Score = 30.1 bits (66), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 1/76 (1%)

Query: 59  PKSRKFNGKKELLKEKYLDSIKIYRLTISCPRCANSIAFRTDPGNSDYVMEVGGVRNYVP 118
            KSR      EL + + +D   + R  +S  R    +AF      SD V  +  V   VP
Sbjct: 68  YKSRTHIPVSELSRPELVDKTVLIRARVSTTRKKGKMAFMVLRDGSDSVQAMAAVEGDVP 127

Query: 119 QKPNDDLNAKTAVESI 134
            K   D   + A ESI
Sbjct: 128 -KEMIDFMGQIATESI 142


>6OKK-c nrPDB
          Length = 107

 Score = 29.3 bits (64), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 16/80 (20%)

Query: 27 MAKKLKTMNKSHASIRLMTPFSMRCLECNEYIPKS---RKFN--------GKKELLKEKY 75
          M KK +   +S  +   + P  +RC  C   +PK    ++FN         ++++ +   
Sbjct: 1  MPKKRRNGGRSKHNRGHVNP--LRCSNCGRCVPKDKAIKRFNIRNIVDTSAQRDIKEASV 58

Query: 76 LDSIKIYRLTIS---CPRCA 92
            + ++ +L I    C  CA
Sbjct: 59 YSTFQLPKLYIKQCYCVSCA 78


>5A29-A nrPDB
          Length = 570

 Score = 28.9 bits (63), Expect = 2.7,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 45/124 (36%), Gaps = 23/124 (18%)

Query: 55  NEYIPKSRKFNGKKELLKEKYLDSIKIYRLTISCPRCANSIAFRTDPG------NSDYVM 108
             Y PK R FN  K   +E  L  ++ YRL             + DP       N  +  
Sbjct: 397 GYYGPKGRVFNAHKPKTEEYLLPILRAYRL-------------QADPELWQLAANMTHHY 443

Query: 109 EVGGVRNYVPQKPNDDLNAKTAVESIDETLQRLVREKEMEQNEKMGIKEQADDKMDLLEK 168
             G + N    KP   LN + +  S       +   +  +Q E +     A DK  L+EK
Sbjct: 444 GWGSLGNDAKAKPT--LNMQLSSVSPMTLFSAIELYQITQQPEYLEFARAAADK--LVEK 499

Query: 169 RLAK 172
           R  +
Sbjct: 500 RFVR 503


>6D6S-A nrPDB
          Length = 443

 Score = 28.5 bits (62), Expect = 2.8,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 10/147 (6%)

Query: 104 SDYVMEVGGVRNYVPQKPNDDLNAKTAVE-SIDETLQRLVREKEME-QNEKMGIKEQADD 161
           SD+V+ +G  R  +P   +     K   E +ID T       + ++ +  K  I  +  +
Sbjct: 194 SDFVLAMGQGR-MIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENLKGKAAKFAINLKKVE 252

Query: 162 KMDLLEKRLAKIQQEQEDDEELENLR---KKNLEMSQRAEMINRSKHAQQEKAVTTDDLD 218
           + +L E     I++   +D  +E LR   +KN+E   ++ + NR K    E  V  +D+D
Sbjct: 253 ERELPELTAEFIKRFGVEDGSVEGLRAEVRKNMERELKSAIRNRVKSQAIEGLVKANDID 312

Query: 219 ---NLVDQVFDN-HRQRTNKPGNNNDE 241
               L+D   D   RQ   + G N  +
Sbjct: 313 VPAALIDSEIDVLRRQAAQRFGGNEKQ 339


>4GXP-A nrPDB
          Length = 467

 Score = 28.2 bits (61), Expect = 4.5,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query: 64  FNGKKELLKEKYLDSIKIYRLTISCPRCANSIAFRTDPGNSDY 106
           +N  KE ++      +K YR +IS PR       R +    D+
Sbjct: 65  YNRWKEDIEIIEKLGVKAYRFSISWPRILPEGTGRVNQKGLDF 107


>2CBU-A nrPDB
          Length = 468

 Score = 28.2 bits (61), Expect = 4.5,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query: 64  FNGKKELLKEKYLDSIKIYRLTISCPRCANSIAFRTDPGNSDY 106
           +N  KE ++      +K YR +IS PR       R +    D+
Sbjct: 80  YNRWKEDIEIIEKLGVKAYRFSISWPRILPEGTGRVNQKGLDF 122


>4RFX-A nrPDB
          Length = 141

 Score = 27.8 bits (60), Expect = 5.0,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 6/80 (7%)

Query: 130 AVESIDETLQRLVREKEMEQNEKMGIKEQADDKMDLLEKRLAKIQQEQEDDEELENLRKK 189
           A+  +++ LQ   RE E+E      ++EQ D     + +   +++  QE   + +   KK
Sbjct: 67  AMNEMNDELQENARETELE------LREQLDLAAARVREAEKRVEAAQETVADYQQTIKK 120

Query: 190 NLEMSQRAEMINRSKHAQQE 209
             E++   + +NR   +QQE
Sbjct: 121 YRELTAHLQDVNRELMSQQE 140


>2QA7-A nrPDB
          Length = 114

 Score = 27.8 bits (60), Expect = 5.5,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 43/82 (52%), Gaps = 4/82 (4%)

Query: 126 NAKTAVESIDETLQRLVREKEMEQNEKMGIKEQADDKMDLLEKRLAKIQQEQEDDEELEN 185
           N KT  + +   L+  V E E +  E+  +++QA D  + L   L ++++++ED E+ + 
Sbjct: 26  NMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQREDTEKAQ- 84

Query: 186 LRKKNLEMSQRAEMINRSKHAQ 207
              ++L   +R    N  ++++
Sbjct: 85  ---RSLSEIERKAQANEQRYSK 103


>3JBN-3 nrPDB
          Length = 95

 Score = 27.8 bits (60), Expect = 5.6,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 16/79 (20%)

Query: 28 AKKLKTMNKSHASIRLMTPFSMRCLECNEYIPKS---RKFN--------GKKELLKEKYL 76
           KK +   +S  +   + P  +RC  C   +PK    ++FN         ++++ +    
Sbjct: 1  PKKRRNGGRSKHNRGHVNP--LRCSNCGRCVPKDKAIKRFNIRNIVDTSAQRDIKEASVY 58

Query: 77 DSIKIYRLTIS---CPRCA 92
           + ++ +L I    C  CA
Sbjct: 59 STFQLPKLYIKQCYCVSCA 77


>4OXD-A nrPDB
          Length = 187

 Score = 27.4 bits (59), Expect = 6.3,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 6  AINKYYP--PDYNPLEAEKLSRKMAKKLKTMNKSHASI 41
            NK+YP   DYNP E      ++ K +K M ++   I
Sbjct: 24 VANKHYPLSKDYNPGENPTAKAELVKLIKAMQEAGFPI 61


>4NT9-B nrPDB
          Length = 219

 Score = 27.4 bits (59), Expect = 6.3,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 6  AINKYYP--PDYNPLEAEKLSRKMAKKLKTMNKSHASI 41
            NK+YP   DYNP E      ++ K +K M ++   I
Sbjct: 56 VANKHYPLSKDYNPGENPTAKAELVKLIKAMQEAGFPI 93


>5WWL-M nrPDB
          Length = 215

 Score = 27.4 bits (59), Expect = 7.4,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 46/111 (41%), Gaps = 14/111 (12%)

Query: 63  KFNGKKELLKEKYLDSIKIYRLTISCPRCANSIAFRTDPGNSDYVMEVGGVRNYVPQKPN 122
           KF    E + ++Y D  ++Y L            F   P    Y+   G   +Y      
Sbjct: 55  KFEVLFESVVDRYYDGFEVYTL---------RNIFSYPPELKGYMRTFGKDVDYSITTEQ 105

Query: 123 DDLNAKTAVESIDETLQRLVREKEMEQNEKMGIKEQADDKMDLLEKRLAKI 173
           D        ++I E  ++LV + ++ ++ +M +  + + K + +EK L +I
Sbjct: 106 D----AAMDQAIQEAAEKLVVKMQLRRDLRMRLSRKREKKTE-IEKHLERI 151


>4EFA-E nrPDB
          Length = 233

 Score = 27.0 bits (58), Expect = 9.4,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 58/132 (43%), Gaps = 17/132 (12%)

Query: 112 GVRNYVPQKPNDDLNAKTAVESIDETLQRLVREKEMEQNEKMGIKEQADDKMDLLEKRLA 171
            +    P + ND+LN           +Q  +R++  E+ +++ +K  AD + ++ +  + 
Sbjct: 4   AITALTPNQVNDELN----------KMQAFIRKEAEEKAKEIQLK--ADQEYEIEKTNIV 51

Query: 172 KIQQEQEDDEELENLRKKNLEMSQRAEMINRSKHAQQEKAVTTDDLDNLVDQVFDNHRQR 231
           + +    D      L+K  L     ++ I +S  A + +       +  +D +F+  +++
Sbjct: 52  RNETNNIDGNFKSKLKKAML-----SQQITKSTIANKMRLKVLSAREQSLDGIFEETKEK 106

Query: 232 TNKPGNNNDEKR 243
            +   NN DE +
Sbjct: 107 LSGIANNRDEYK 118


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.309    0.129    0.352 

Lambda     K      H
   0.267   0.0399    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,492,939
Number of Sequences: 36641
Number of extensions: 399624
Number of successful extensions: 1289
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 1216
Number of HSP's gapped (non-prelim): 135
length of query: 278
length of database: 10,336,785
effective HSP length: 96
effective length of query: 182
effective length of database: 6,819,249
effective search space: 1241103318
effective search space used: 1241103318
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (27.0 bits)