BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P28004 (379 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 5GMK-P nrPDB 785 0.0 5XJC-R nrPDB 96 2e-20 3JB9-M nrPDB 93 2e-19 6QDV-K nrPDB 84 1e-16 2LLX-A nrPDB 28 5.1 4UTP-A nrPDB 28 5.2 3ZK8-A nrPDB 28 6.1 >5GMK-P nrPDB Length = 379 Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/379 (100%), Positives = 379/379 (100%) Query: 1 MFSNRLPPPKHSQGRVSTALSSDRVEPAILTDQIAKNVKLDDFIPKRQSNFELSVPLPTK 60 MFSNRLPPPKHSQGRVSTALSSDRVEPAILTDQIAKNVKLDDFIPKRQSNFELSVPLPTK Sbjct: 1 MFSNRLPPPKHSQGRVSTALSSDRVEPAILTDQIAKNVKLDDFIPKRQSNFELSVPLPTK 60 Query: 61 AEIQECTARTKSYIQRLVNAKLANSNNRASSRYVTETHQAPANLLLNNSHHIEVVSKQMD 120 AEIQECTARTKSYIQRLVNAKLANSNNRASSRYVTETHQAPANLLLNNSHHIEVVSKQMD Sbjct: 61 AEIQECTARTKSYIQRLVNAKLANSNNRASSRYVTETHQAPANLLLNNSHHIEVVSKQMD 120 Query: 121 PLLPRFVGKKARKVVAPTENDEVVPVLHMDGSNDRGEADPNEWKIPAAVSNWKNPNGYTV 180 PLLPRFVGKKARKVVAPTENDEVVPVLHMDGSNDRGEADPNEWKIPAAVSNWKNPNGYTV Sbjct: 121 PLLPRFVGKKARKVVAPTENDEVVPVLHMDGSNDRGEADPNEWKIPAAVSNWKNPNGYTV 180 Query: 181 ALERRVGKALDNENNTINDGFMKLSEALENADKKARQEIRSKMELKRLAMEQEMLAKESK 240 ALERRVGKALDNENNTINDGFMKLSEALENADKKARQEIRSKMELKRLAMEQEMLAKESK Sbjct: 181 ALERRVGKALDNENNTINDGFMKLSEALENADKKARQEIRSKMELKRLAMEQEMLAKESK 240 Query: 241 LKELSQRARYHNGTPQTGAIVKPKKQTSTVARLKELAYSQGRDVSEKIILGAAKRSEQPD 300 LKELSQRARYHNGTPQTGAIVKPKKQTSTVARLKELAYSQGRDVSEKIILGAAKRSEQPD Sbjct: 241 LKELSQRARYHNGTPQTGAIVKPKKQTSTVARLKELAYSQGRDVSEKIILGAAKRSEQPD 300 Query: 301 LQYDSRFFTRGANASAKRHEDQVYDNPLFVQQDIESIYKTNYEKLDEAVNVKSEGASGSH 360 LQYDSRFFTRGANASAKRHEDQVYDNPLFVQQDIESIYKTNYEKLDEAVNVKSEGASGSH Sbjct: 301 LQYDSRFFTRGANASAKRHEDQVYDNPLFVQQDIESIYKTNYEKLDEAVNVKSEGASGSH 360 Query: 361 GPIQFTKAESDDKSDNYGA 379 GPIQFTKAESDDKSDNYGA Sbjct: 361 GPIQFTKAESDDKSDNYGA 379 >5XJC-R nrPDB Length = 536 Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 103/387 (26%), Positives = 172/387 (44%), Gaps = 67/387 (17%) Query: 39 KLDDFIPKRQSNFE-LSVPLPTKAEIQECTARTKSYIQRLVNAKLANS------NNRASS 91 K D +PK N + + P + I+E T +T+ +++ V+ K+A + + A + Sbjct: 115 KYTDLVPKEVMNADDPDLQRPDEEAIKEITEKTRVALEKSVSQKVAAAMPVRAADKLAPA 174 Query: 92 RYV--TETHQAPANLLLNNSHHIEVVSKQMDPLLP-RFVGKKARKVVAPTENDEVVPVLH 148 +Y+ T + Q A I +V Q DP+ P RF K K + PV+H Sbjct: 175 QYIRYTPSQQGVAFNSGAKQRVIRMVEMQKDPMEPPRF---KINKKIPRGPPSPPAPVMH 231 Query: 149 MDGSNDRGEADPNEWKIPAAVSNWKNPNGYTVALERRV---GKALDNENNTINDGFMKLS 205 S + EWKIP +SNWKN GYT+ L++R+ G+ L + IN+ F KL+ Sbjct: 232 -SPSRKMTVKEQQEWKIPPCISNWKNAKGYTIPLDKRLAADGRGL--QTVHINENFAKLA 288 Query: 206 EALENADKKARQEIRSKMELKRLAMEQEMLAKESKLKELSQRARYHNGTPQTGA------ 259 EAL AD+KAR+ + + +++R ++E E KL+E++Q+AR +T Sbjct: 289 EALYIADRKAREAVEMRAQVERKMAQKEKEKHEEKLREMAQKARERRAGIKTHVEKEDGE 348 Query: 260 ----------IVKPKKQTSTVARL-----KELAYSQGRDVSEKIILGAAKRSEQPDLQYD 304 K ++ ++R +L ++ RD+SE I LG ++QYD Sbjct: 349 ARERDEIRHDRRKERQHDRNLSRAAPDKRSKLQRNENRDISEVIALGVPNPRTSNEVQYD 408 Query: 305 SRFF--TRGANASAKRHEDQVY------------------------DNPLFVQQDIESIY 338 R F ++G ++ ED++Y D ++ D+E+ Sbjct: 409 QRLFNQSKGMDSGFAGGEDEIYNVYDQAWRGGKDMAQSIYRPSKNLDKDMY-GDDLEARI 467 Query: 339 KTNYEKLDEAVNVKSEGASGSHGPIQF 365 KTN D+ + G GP+QF Sbjct: 468 KTNRFVPDKEFSGSDRRQRGREGPVQF 494 >3JB9-M nrPDB Length = 557 Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 114/221 (51%), Gaps = 20/221 (9%) Query: 42 DFIP--KRQSNFELSVPLPTKAEIQECTARTKSYIQRLVNAKLANSN-------NRASSR 92 D IP R E+S+ P+ + QE +TK +Q++++ ++A S R Sbjct: 123 DLIPLRARLGVGEISLEKPSDEQKQEVANKTKLALQKILSKQIAQSQPKSAVVQQRDDPV 182 Query: 93 YVTETHQAPANLLLNNSHHIEVVSKQMDPL-LPRFVGKKARKVVAPTENDEVVPVLHMDG 151 Y+ T L+ I++V+ + DP+ P+F KK + + Sbjct: 183 YIRYTPSNQMGQALSKQRIIKMVTAEQDPMEPPKFRHKKVPRGPPSPPPPVLHSPPRKVS 242 Query: 152 SNDRGEADPNEWKIPAAVSNWKNPNGYTVALERRV---GKALDNENNTINDGFMKLSEAL 208 + ++ +W+IP ++SNWKNP GYT+ L++R+ G+ L++ INDGF K SEAL Sbjct: 243 AQEQ-----QDWQIPPSISNWKNPKGYTIPLDKRLAADGRGLNDVE--INDGFAKFSEAL 295 Query: 209 ENADKKARQEIRSKMELKRLAMEQEMLAKESKLKELSQRAR 249 +++AR+E+R + +++ E+E KE +L L+Q+AR Sbjct: 296 YTVERQAREEVRYRAIMRQKMAEKEKQEKEQRLFMLAQKAR 336 Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 3/49 (6%) Query: 282 RDVSEKIILGAAKRSEQPDLQYDSRFFTRGAN-ASAKRHEDQ--VYDNP 327 RDV+E++ LG +K S D DSR F + + S + ED VYD P Sbjct: 426 RDVAERVALGLSKPSMSSDTMIDSRLFNQASGLGSGFQDEDSYNVYDKP 474 >6QDV-K nrPDB Length = 295 Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 116/224 (51%), Gaps = 19/224 (8%) Query: 39 KLDDFIPKRQSNFE-LSVPLPTKAEIQECTARTKSYIQRLVNAKLANS------NNRASS 91 K D +PK N + + P + I+E T +T+ +++ V+ K+A + + A + Sbjct: 75 KYTDLVPKEVMNADDPDLQRPDEEAIKEITEKTRVALEKSVSQKVAAAMPVRAADKLAPA 134 Query: 92 RYV--TETHQAPANLLLNNSHHIEVVSKQMDPL-LPRFVGKKARKVVAPTENDEVVPVLH 148 +Y+ T + Q A I +V Q DP+ PRF K K + PV+H Sbjct: 135 QYIRYTPSQQGVAFNSGAKQRVIRMVEMQKDPMEPPRF---KINKKIPRGPPSPPAPVMH 191 Query: 149 MDGSNDRGEADPNEWKIPAAVSNWKNPNGYTVALERRV---GKALDNENNTINDGFMKLS 205 S + EWKIP +SNWKN GYT+ L++R+ G+ L + IN+ F KL+ Sbjct: 192 -SPSRKMTVKEQQEWKIPPCISNWKNAKGYTIPLDKRLAADGRGLQTVH--INENFAKLA 248 Query: 206 EALENADKKARQEIRSKMELKRLAMEQEMLAKESKLKELSQRAR 249 EAL AD+KAR+ + + +++R ++E E KL+E++Q+AR Sbjct: 249 EALYIADRKAREAVEMRAQVERKMAQKEKEKHEEKLREMAQKAR 292 >2LLX-A nrPDB Length = 150 Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust. Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 6/65 (9%) Query: 240 KLKEL--SQRARYHNGTPQTGAIVKPKKQTSTVARLKELAYSQGRDVSEKI----ILGAA 293 K+K+L S A NGT I+ PK Q S VA++ + ++ ++ +LGA Sbjct: 16 KIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAI 75 Query: 294 KRSEQ 298 +Q Sbjct: 76 TSVQQ 80 >4UTP-A nrPDB Length = 314 Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust. Identities = 8/20 (40%), Positives = 16/20 (80%) Query: 144 VPVLHMDGSNDRGEADPNEW 163 V V++++G N++G+ DP+ W Sbjct: 122 VDVIYLEGQNEKGKEDPHAW 141 >3ZK8-A nrPDB Length = 278 Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust. Identities = 8/20 (40%), Positives = 16/20 (80%) Query: 144 VPVLHMDGSNDRGEADPNEW 163 V V++++G N++G+ DP+ W Sbjct: 91 VDVIYLEGQNEKGKEDPHAW 110 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 5GMK-P nrPDB 565 e-161 5XJC-R nrPDB 359 1e-99 3JB9-M nrPDB 251 4e-67 6QDV-K nrPDB 243 1e-64 Sequences not found previously or not previously below threshold: 1AOR-A nrPDB 32 0.39 5BX9-A nrPDB 32 0.40 1SJP-A nrPDB 32 0.41 3IZY-P nrPDB 31 0.98 4ZDA-A nrPDB 30 1.4 2N5E-A nrPDB 30 2.2 6R5K-D nrPDB 30 2.2 2GLU-A nrPDB 30 2.2 4M9Q-A nrPDB 29 4.7 5DI3-B nrPDB 29 5.0 2I1J-A nrPDB 28 6.6 CONVERGED! >5GMK-P nrPDB Length = 379 Score = 565 bits (1456), Expect = e-161, Method: Composition-based stats. Identities = 379/379 (100%), Positives = 379/379 (100%) Query: 1 MFSNRLPPPKHSQGRVSTALSSDRVEPAILTDQIAKNVKLDDFIPKRQSNFELSVPLPTK 60 MFSNRLPPPKHSQGRVSTALSSDRVEPAILTDQIAKNVKLDDFIPKRQSNFELSVPLPTK Sbjct: 1 MFSNRLPPPKHSQGRVSTALSSDRVEPAILTDQIAKNVKLDDFIPKRQSNFELSVPLPTK 60 Query: 61 AEIQECTARTKSYIQRLVNAKLANSNNRASSRYVTETHQAPANLLLNNSHHIEVVSKQMD 120 AEIQECTARTKSYIQRLVNAKLANSNNRASSRYVTETHQAPANLLLNNSHHIEVVSKQMD Sbjct: 61 AEIQECTARTKSYIQRLVNAKLANSNNRASSRYVTETHQAPANLLLNNSHHIEVVSKQMD 120 Query: 121 PLLPRFVGKKARKVVAPTENDEVVPVLHMDGSNDRGEADPNEWKIPAAVSNWKNPNGYTV 180 PLLPRFVGKKARKVVAPTENDEVVPVLHMDGSNDRGEADPNEWKIPAAVSNWKNPNGYTV Sbjct: 121 PLLPRFVGKKARKVVAPTENDEVVPVLHMDGSNDRGEADPNEWKIPAAVSNWKNPNGYTV 180 Query: 181 ALERRVGKALDNENNTINDGFMKLSEALENADKKARQEIRSKMELKRLAMEQEMLAKESK 240 ALERRVGKALDNENNTINDGFMKLSEALENADKKARQEIRSKMELKRLAMEQEMLAKESK Sbjct: 181 ALERRVGKALDNENNTINDGFMKLSEALENADKKARQEIRSKMELKRLAMEQEMLAKESK 240 Query: 241 LKELSQRARYHNGTPQTGAIVKPKKQTSTVARLKELAYSQGRDVSEKIILGAAKRSEQPD 300 LKELSQRARYHNGTPQTGAIVKPKKQTSTVARLKELAYSQGRDVSEKIILGAAKRSEQPD Sbjct: 241 LKELSQRARYHNGTPQTGAIVKPKKQTSTVARLKELAYSQGRDVSEKIILGAAKRSEQPD 300 Query: 301 LQYDSRFFTRGANASAKRHEDQVYDNPLFVQQDIESIYKTNYEKLDEAVNVKSEGASGSH 360 LQYDSRFFTRGANASAKRHEDQVYDNPLFVQQDIESIYKTNYEKLDEAVNVKSEGASGSH Sbjct: 301 LQYDSRFFTRGANASAKRHEDQVYDNPLFVQQDIESIYKTNYEKLDEAVNVKSEGASGSH 360 Query: 361 GPIQFTKAESDDKSDNYGA 379 GPIQFTKAESDDKSDNYGA Sbjct: 361 GPIQFTKAESDDKSDNYGA 379 >5XJC-R nrPDB Length = 536 Score = 359 bits (921), Expect = 1e-99, Method: Composition-based stats. Identities = 103/387 (26%), Positives = 172/387 (44%), Gaps = 67/387 (17%) Query: 39 KLDDFIPKRQSNFE-LSVPLPTKAEIQECTARTKSYIQRLVNAKLANS------NNRASS 91 K D +PK N + + P + I+E T +T+ +++ V+ K+A + + A + Sbjct: 115 KYTDLVPKEVMNADDPDLQRPDEEAIKEITEKTRVALEKSVSQKVAAAMPVRAADKLAPA 174 Query: 92 RYV--TETHQAPANLLLNNSHHIEVVSKQMDPL-LPRFVGKKARKVVAPTENDEVVPVLH 148 +Y+ T + Q A I +V Q DP+ PRF K K + PV+H Sbjct: 175 QYIRYTPSQQGVAFNSGAKQRVIRMVEMQKDPMEPPRF---KINKKIPRGPPSPPAPVMH 231 Query: 149 MDGSNDRGEADPNEWKIPAAVSNWKNPNGYTVALERRV---GKALDNENNTINDGFMKLS 205 S + EWKIP +SNWKN GYT+ L++R+ G+ L + IN+ F KL+ Sbjct: 232 -SPSRKMTVKEQQEWKIPPCISNWKNAKGYTIPLDKRLAADGRGLQTVH--INENFAKLA 288 Query: 206 EALENADKKARQEIRSKMELKRLAMEQEMLAKESKLKELSQRARYHNGTPQTGA------ 259 EAL AD+KAR+ + + +++R ++E E KL+E++Q+AR +T Sbjct: 289 EALYIADRKAREAVEMRAQVERKMAQKEKEKHEEKLREMAQKARERRAGIKTHVEKEDGE 348 Query: 260 ----------IVKPKKQTSTVARL-----KELAYSQGRDVSEKIILGAAKRSEQPDLQYD 304 K ++ ++R +L ++ RD+SE I LG ++QYD Sbjct: 349 ARERDEIRHDRRKERQHDRNLSRAAPDKRSKLQRNENRDISEVIALGVPNPRTSNEVQYD 408 Query: 305 SRFF--TRGANASAKRHEDQVY------------------------DNPLFVQQDIESIY 338 R F ++G ++ ED++Y D ++ D+E+ Sbjct: 409 QRLFNQSKGMDSGFAGGEDEIYNVYDQAWRGGKDMAQSIYRPSKNLDKDMY-GDDLEARI 467 Query: 339 KTNYEKLDEAVNVKSEGASGSHGPIQF 365 KTN D+ + G GP+QF Sbjct: 468 KTNRFVPDKEFSGSDRRQRGREGPVQF 494 >3JB9-M nrPDB Length = 557 Score = 251 bits (641), Expect = 4e-67, Method: Composition-based stats. Identities = 96/428 (22%), Positives = 167/428 (39%), Gaps = 103/428 (24%) Query: 40 LDDFIP--KRQSNFELSVPLPTKAEIQECTARTKSYIQRLVNAKLANSN-------NRAS 90 D IP R E+S+ P+ + QE +TK +Q++++ ++A S R Sbjct: 121 FRDLIPLRARLGVGEISLEKPSDEQKQEVANKTKLALQKILSKQIAQSQPKSAVVQQRDD 180 Query: 91 SRYVTETHQAPANLLLNNSHHIEVVSKQMDPL-LPRFVGKKARKVVAPTENDEVVPVLHM 149 Y+ T L+ I++V+ + DP+ P+F KK + + Sbjct: 181 PVYIRYTPSNQMGQALSKQRIIKMVTAEQDPMEPPKFRHKKVPRGPPSPPPPVLHSPPRK 240 Query: 150 DGSNDRGEADPNEWKIPAAVSNWKNPNGYTVALERRV---GKALDNENNTINDGFMKLSE 206 + + +W+IP ++SNWKNP GYT+ L++R+ G+ L++ INDGF K SE Sbjct: 241 VSAQ-----EQQDWQIPPSISNWKNPKGYTIPLDKRLAADGRGLNDVE--INDGFAKFSE 293 Query: 207 ALENADKKARQEIRSKMELKRLAMEQEMLAKESKLKELSQRARY----HNGTPQTGAIVK 262 AL +++AR+E+R + +++ E+E KE +L L+Q+AR N + K Sbjct: 294 ALYTVERQAREEVRYRAIMRQKMAEKEKQEKEQRLFMLAQKAREDRMGRNAASSGPSHAK 353 Query: 263 PK-----------------------------------------------KQTSTVAR--- 272 P+ ++ ++R Sbjct: 354 PRSTSVSSEERSRSRAGSFSHHSESENEDEDSEAFRRRQELRRERRRQAEKDLRLSRMGA 413 Query: 273 ---LKELAYSQGRDVSEKIILGAAKRSEQPDLQYDSRFFTR--GANASAKRHED-QVYDN 326 K + RDV+E++ LG +K S D DSR F + G + + + VYD Sbjct: 414 EKRAKLAEKDRPRDVAERVALGLSKPSMSSDTMIDSRLFNQASGLGSGFQDEDSYNVYDK 473 Query: 327 P-------------------LFVQQDIESIYKTNYEKL----DEAVNVKSEGASGSHGPI 363 P + ++E I + + + E GP+ Sbjct: 474 PWRAAPSSTLYRPGATLSRQVDASAELERITSESRYDVLGNAHKKFKGSDEVVESRAGPV 533 Query: 364 QFTKAESD 371 F K +D Sbjct: 534 TFEKDIAD 541 >6QDV-K nrPDB Length = 295 Score = 243 bits (619), Expect = 1e-64, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 116/227 (51%), Gaps = 19/227 (8%) Query: 39 KLDDFIPKRQSNFE-LSVPLPTKAEIQECTARTKSYIQRLVNAKLANS------NNRASS 91 K D +PK N + + P + I+E T +T+ +++ V+ K+A + + A + Sbjct: 75 KYTDLVPKEVMNADDPDLQRPDEEAIKEITEKTRVALEKSVSQKVAAAMPVRAADKLAPA 134 Query: 92 RYV--TETHQAPANLLLNNSHHIEVVSKQMDPL-LPRFVGKKARKVVAPTENDEVVPVLH 148 +Y+ T + Q A I +V Q DP+ PRF K K + PV+H Sbjct: 135 QYIRYTPSQQGVAFNSGAKQRVIRMVEMQKDPMEPPRF---KINKKIPRGPPSPPAPVMH 191 Query: 149 MDGSNDRGEADPNEWKIPAAVSNWKNPNGYTVALERRV---GKALDNENNTINDGFMKLS 205 S + EWKIP +SNWKN GYT+ L++R+ G+ L + IN+ F KL+ Sbjct: 192 -SPSRKMTVKEQQEWKIPPCISNWKNAKGYTIPLDKRLAADGRGLQTVH--INENFAKLA 248 Query: 206 EALENADKKARQEIRSKMELKRLAMEQEMLAKESKLKELSQRARYHN 252 EAL AD+KAR+ + + +++R ++E E KL+E++Q+AR Sbjct: 249 EALYIADRKAREAVEMRAQVERKMAQKEKEKHEEKLREMAQKARERR 295 >1AOR-A nrPDB Length = 605 Score = 32.1 bits (71), Expect = 0.39, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 18/104 (17%) Query: 186 VGKALDNENNTIN---------DGFMKLSEALENADK---------KARQEIRSKMELKR 227 G D+ + +N + ++K+ E + NA++ AR + K L+ Sbjct: 499 FGLGADDYRDLLNAALGWDFTTEDYLKIGERIWNAERLFNLKAGLDPARDDTLPKRFLEE 558 Query: 228 LAMEQEMLAKESKLKELSQRARYHNGTPQTGAIVKPKKQTSTVA 271 E +LKE+ R G + G I K K + +A Sbjct: 559 PMPEGPNKGHTVRLKEMLPRYYKLRGWTEDGKIPKEKLEELGIA 602 >5BX9-A nrPDB Length = 416 Score = 32.1 bits (71), Expect = 0.40, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 15/81 (18%) Query: 136 APTENDEVVPVLHMDGSNDRGEADPNEWKIPAAVSNWK---NPNGY-------TVALERR 185 P + + + M A W P + W+ +P GY T+AL Sbjct: 110 PPRDPEVFARRMAMLSQRYPSVAAWQVWNEPNLIGFWRPKADPEGYAKLLQASTIAL--- 166 Query: 186 VGKALDNENNTINDGFMKLSE 206 + +D E ++ G SE Sbjct: 167 --RMVDPEKPVVSAGMAFFSE 185 >1SJP-A nrPDB Length = 504 Score = 32.1 bits (71), Expect = 0.41, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 5/88 (5%) Query: 204 LSEALENADKKARQEIRSKMELKRLAMEQEMLAKESKLKELSQRARYHNGTPQTGAIVKP 263 + E + D A + + + E++ + + + +L +L+ T +K Sbjct: 288 IVEGAGDTDAIAGRVAQIRQEIENSDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKE 347 Query: 264 KKQTSTVARLKELAYSQGRDVSEKIILG 291 +K R+++ + V E I+ G Sbjct: 348 RKH-----RIEDAVRNAKAAVEEGIVAG 370 >3IZY-P nrPDB Length = 537 Score = 30.9 bits (68), Expect = 0.98, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 3/69 (4%) Query: 214 KARQEIRSKMELKRLAMEQEMLAKESKLKELSQRARYHNGTPQTGAIVKPKKQTSTVARL 273 + E R++ + EQE + LK + ++ + H + + K T Sbjct: 257 EVESEPRAREVVDWRKYEQEQEKNKEDLKLIEEKRKEHQ---EAHRKDREKYGTVHWKER 313 Query: 274 KELAYSQGR 282 + Y + R Sbjct: 314 SYIKYREKR 322 >4ZDA-A nrPDB Length = 767 Score = 30.2 bits (66), Expect = 1.4, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 62/151 (41%), Gaps = 12/151 (7%) Query: 176 NGYTVALERRVGKALDNENNTINDGFMK-LSEALENADKKARQEIRSKMELKRLAMEQEM 234 GY V ++ I D + K L A+ ++ + R+ A+++ Sbjct: 105 KGYNVP--DYPANPKTDDEKKIKDRYAKILGSAVNPVLREGNSDRRAP-----KAVKEYA 157 Query: 235 LAKESKLKELSQRARYHNGTPQTGAIVKPKKQTSTVARLKELAYSQGRDVSEKIILGAAK 294 + E SQ +R H T +TG +K + T+ R + + E+I+L Sbjct: 158 RKHPHSMGEWSQASRTHVATMKTGDFYHGEK-SMTLDRDRRVKMVLKTKSGEEIVLKPEV 216 Query: 295 RSEQPDLQYDSRFFTRGANASAKRHEDQVYD 325 + + D+ DS + ++ A + +E+Q+ D Sbjct: 217 KLDAGDI-IDSMYMSKKALIAF--YEEQIED 244 >2N5E-A nrPDB Length = 167 Score = 29.8 bits (65), Expect = 2.2, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 9/111 (8%) Query: 185 RVGKALDNENNTINDGFMKLSEALENADKKARQEIRSKMELK----RLAMEQEMLAKESK 240 ++ + L D K +E L K +E+++K++ + ++EM K Sbjct: 5 KLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQK 64 Query: 241 LK----ELSQRARYHNGTPQTG-AIVKPKKQTSTVARLKELAYSQGRDVSE 286 ++ E+ RAR H +T A + + ARL+ L + G ++E Sbjct: 65 VEPLGEEMRDRARAHVDALRTHLAPYSDELRQRLAARLEALKENGGARLAE 115 >6R5K-D nrPDB Length = 581 Score = 29.8 bits (65), Expect = 2.2, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 38/131 (29%), Gaps = 22/131 (16%) Query: 60 KAEIQECTARTKSYIQRLVNAK---LANSNNRASSRYVTETHQAPANLLLNNSHHIEVVS 116 + + T + Q++V K +A + + V + A N + + + Sbjct: 377 EEATKAITEKN----QQIVAGKPLYVAIAQRKD----VRRSQLAQQIQARNQMRYQQATA 428 Query: 117 KQMDP--------LLPRFVGKKARKVVA-PTENDEVVPVLHMDGSNDRGEADPNE--WKI 165 + P F G + V N + + + N N + + Sbjct: 429 AAAAAAAGMPGQFMPPMFYGVMPPRGVPFNGPNPQQMNPMGGMPKNGMPPQFRNGPVYGV 488 Query: 166 PAAVSNWKNPN 176 P +N N Sbjct: 489 PPQGGFPRNAN 499 >2GLU-A nrPDB Length = 239 Score = 29.8 bits (65), Expect = 2.2, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 1/86 (1%) Query: 117 KQMDPLLPRFV-GKKARKVVAPTENDEVVPVLHMDGSNDRGEADPNEWKIPAAVSNWKNP 175 DP+L FV + + + M +N D +W +P +W Sbjct: 127 APEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQKWNLPIQYDSWIKR 186 Query: 176 NGYTVALERRVGKALDNENNTINDGF 201 G E+++ L++ ++ D F Sbjct: 187 GGTPADREKQIITHLNHASDEARDTF 212 >4M9Q-A nrPDB Length = 227 Score = 28.6 bits (62), Expect = 4.7, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 7/77 (9%) Query: 167 AAVSNWKNPNGYTVALERRVGKALDNENNTINDGFMKLSEALENADKKARQEIRSKMELK 226 + K P G V + R+ L T++ F +L ++ ++ RQE + K Sbjct: 143 PCTA--KMPAGQDV--DHRLRDGLKWLVGTVDREFGRLDPRVQTEAEEVRQE---EARKK 195 Query: 227 RLAMEQEMLAKESKLKE 243 + E+ +E +L++ Sbjct: 196 KEREERLRKQREERLRQ 212 >5DI3-B nrPDB Length = 263 Score = 28.6 bits (62), Expect = 5.0, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 7/77 (9%) Query: 167 AAVSNWKNPNGYTVALERRVGKALDNENNTINDGFMKLSEALENADKKARQEIRSKMELK 226 + K P G V + R+ L T++ F +L ++ ++ RQE + K Sbjct: 143 PCTA--KMPAGQDV--DHRLRDGLKWLVGTVDREFGRLDPRVQTEAEEVRQE---EARKK 195 Query: 227 RLAMEQEMLAKESKLKE 243 + E+ +E +L++ Sbjct: 196 KEREERLRKQREERLRQ 212 >2I1J-A nrPDB Length = 575 Score = 28.2 bits (61), Expect = 6.6, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 6/76 (7%) Query: 212 DKKARQEIRSKMELK---RLAMEQEMLAKESKLKELSQRARYHNGTP---QTGAIVKPKK 265 +K A+Q R K++L+ R E++ + +L+++ + Q + ++ Sbjct: 312 EKLAKQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQ 371 Query: 266 QTSTVARLKELAYSQG 281 A +EL Q Sbjct: 372 LRQLQAAKEELEQRQN 387 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.301 0.122 0.309 Lambda K H 0.267 0.0369 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,037,294 Number of Sequences: 36641 Number of extensions: 426384 Number of successful extensions: 1398 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 36 Number of HSP's that attempted gapping in prelim test: 1227 Number of HSP's gapped (non-prelim): 149 length of query: 379 length of database: 10,336,785 effective HSP length: 99 effective length of query: 280 effective length of database: 6,709,326 effective search space: 1878611280 effective search space used: 1878611280 T: 11 A: 40 X1: 16 ( 6.9 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.3 bits) S2: 59 (27.5 bits)