BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P28000 (142 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 6CNF-K nrPDB 290 2e-79 6O9L-K nrPDB 65 8e-12 3J1N-K nrPDB 45 1e-05 2PMZ-L nrPDB 45 1e-05 6J4X-K nrPDB 45 2e-05 2WB1-L nrPDB 44 3e-05 3H0G-K nrPDB 42 7e-05 4QJV-B nrPDB 37 0.003 5WLC-LP nrPDB 30 0.29 2NRJ-A nrPDB 30 0.44 3L9Q-A nrPDB 29 0.65 3MI6-A nrPDB 28 1.1 5Z3Q-B nrPDB 28 1.5 5K0Z-A nrPDB 28 1.7 2ACV-A nrPDB 28 1.9 5VOY-P nrPDB 27 2.2 5EXR-B nrPDB 27 3.7 5E2F-A nrPDB 27 4.5 5OQL-d nrPDB 26 5.0 4CZZ-B nrPDB 26 7.7 >6CNF-K nrPDB Length = 142 Score = 290 bits (742), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 142/142 (100%), Positives = 142/142 (100%) Query: 1 MTEDIEQKKTATEVTPQEPKHIQEEEEQDVDMTGDEEQEEEPDREKIKLLTQATSEDGTS 60 MTEDIEQKKTATEVTPQEPKHIQEEEEQDVDMTGDEEQEEEPDREKIKLLTQATSEDGTS Sbjct: 1 MTEDIEQKKTATEVTPQEPKHIQEEEEQDVDMTGDEEQEEEPDREKIKLLTQATSEDGTS 60 Query: 61 ASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDALQKG 120 ASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDALQKG Sbjct: 61 ASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDALQKG 120 Query: 121 LKDLMDLCDVVESKFTEKIKSM 142 LKDLMDLCDVVESKFTEKIKSM Sbjct: 121 LKDLMDLCDVVESKFTEKIKSM 142 >6O9L-K nrPDB Length = 117 Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 48/78 (61%) Query: 63 FQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDALQKGLK 122 F I +EDHTLGN ++ ++K+P V F GY +PHP E+ + IR+QT + + +A + Sbjct: 33 FTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAIT 92 Query: 123 DLMDLCDVVESKFTEKIK 140 DL+ ++E +F IK Sbjct: 93 DLISELSLLEERFRVAIK 110 >3J1N-K nrPDB Length = 120 Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 8/102 (7%) Query: 42 PDREKIKLLTQATS----EDGTSASFQIV----EEDHTLGNALRYVIMKNPDVEFCGYSI 93 PDR ++ LL + S + T A +V +EDHTLGN +R ++ + V F Y + Sbjct: 4 PDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKV 63 Query: 94 PHPSENLLNIRIQTYGETTAVDALQKGLKDLMDLCDVVESKF 135 HP +RIQT DAL+ +++ +++ F Sbjct: 64 EHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNF 105 >2PMZ-L nrPDB Length = 92 Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 4/80 (5%) Query: 63 FQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDALQKGLK 122 +I EDHTLGN + + + V F Y PHP + + ++I T G T DAL K ++ Sbjct: 15 LEIEGEDHTLGNLIAGTLRRISGVSFASYYQPHPLSDKIIVKILTDGSITPKDALLKAIE 74 Query: 123 DLMDLCDVVESKFTEKIKSM 142 ++ + S + ++IK + Sbjct: 75 NIRGMT----SHYIDEIKGL 90 >6J4X-K nrPDB Length = 118 Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 2/95 (2%) Query: 43 DREKIKLLTQATSEDGTSASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLN 102 D K+K+ + + F+ EDHTL N LR + PDV F Y + HP Sbjct: 15 DVPKLKITPDSRVPNCIIIKFE--REDHTLANLLREELALYPDVTFVAYKVEHPLFANFV 72 Query: 103 IRIQTYGETTAVDALQKGLKDLMDLCDVVESKFTE 137 +R+QT T AL++ +++ ++ KF E Sbjct: 73 MRLQTEEGTRPKQALERACASIINKLKTLDHKFNE 107 >2WB1-L nrPDB Length = 92 Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 4/80 (5%) Query: 63 FQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDALQKGLK 122 +I EDHTLGN + + K V F Y PHP + + ++I T G DAL K + Sbjct: 15 LEIEGEDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVKILTDGSIAPKDALLKAI- 73 Query: 123 DLMDLCDVVESKFTEKIKSM 142 + V+ S + ++IK + Sbjct: 74 ---ETVRVMASHYIDEIKGL 90 >3H0G-K nrPDB Length = 123 Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 22/81 (27%), Positives = 40/81 (49%) Query: 55 SEDGTSASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAV 114 S+ +A + +EDHTL N L ++ + V F GY +PHP + +R+QT + + Sbjct: 24 SKSPNAAVVTLEKEDHTLANMLANQLLSDERVLFAGYKVPHPLNHNFILRVQTVEDCSPK 83 Query: 115 DALQKGLKDLMDLCDVVESKF 135 + K L+ + ++ F Sbjct: 84 QVIVDAAKSLITHLEEIKVNF 104 >4QJV-B nrPDB Length = 94 Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 2/66 (3%) Query: 63 FQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQ--TYGETTAVDALQKG 120 F + EDHT N L + +N V F GY+I HP R + T G+ T AL++ Sbjct: 15 FYLEGEDHTFANLLTETLHENEHVTFAGYTIEHPITMARKPRFKVVTDGKITPEKALEEA 74 Query: 121 LKDLMD 126 + + D Sbjct: 75 AQKIFD 80 >5WLC-LP nrPDB Length = 440 Score = 30.4 bits (67), Expect = 0.29, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query: 25 EEEQDVDMTGDEEQEEEPDREKIKLLTQATSEDGTSASFQIVEED-HTLGNA 75 E EQ++DM +++ + PD EK L +T + ++ E D LGNA Sbjct: 208 EREQELDMQNEQKNNQAPDEEKSHLQVPSTGDSMKDKLNELPEADISVLGNA 259 >2NRJ-A nrPDB Length = 346 Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust. Identities = 11/20 (55%), Positives = 15/20 (75%) Query: 74 NALRYVIMKNPDVEFCGYSI 93 NA Y+++KNPDV F G +I Sbjct: 37 NAYSYMLIKNPDVNFEGITI 56 >3L9Q-A nrPDB Length = 195 Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust. Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%) Query: 31 DMTGDEEQEEEPDREKIKLLTQATSEDGTSASFQIVEEDHTLGNALRYVIMKNPDVEFCG 90 D G + +P+ K KL + S G S +V+ H +Y M + +V+ CG Sbjct: 111 DYHGCPFRHSDPELLKQKLQSYKISPGGISQILDLVKGTHYQVACQKYFEMIH-NVDDCG 169 Query: 91 YSIPHPSE 98 +S+ HP++ Sbjct: 170 FSLNHPNQ 177 >3MI6-A nrPDB Length = 745 Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 19/33 (57%) Query: 56 EDGTSASFQIVEEDHTLGNALRYVIMKNPDVEF 88 EDG S+Q+V +D A RY ++ +P+ + Sbjct: 647 EDGNVTSWQVVSDDQKQAIAARYQLLNHPNAPY 679 >5Z3Q-B nrPDB Length = 214 Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust. Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%) Query: 6 EQKKTATEVTPQEPKHIQEEEEQDVDMTGDEEQEEEPDREKIKLLTQATS 55 E + T+T P +P H ++Q V + D Q PD +KL Q S Sbjct: 33 EAENTSTYSLPPDPSHFDGYKQQGVVIMDDLNQ--NPDGADMKLFCQMVS 80 >5K0Z-A nrPDB Length = 331 Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust. Identities = 14/40 (35%), Positives = 20/40 (50%) Query: 96 PSENLLNIRIQTYGETTAVDALQKGLKDLMDLCDVVESKF 135 PS + + + G A+ L KGL D + L DV+E K Sbjct: 18 PSNKITVVGVGQVGMACAISILGKGLCDELALVDVLEDKL 57 >2ACV-A nrPDB Length = 463 Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 17/28 (60%) Query: 110 ETTAVDALQKGLKDLMDLCDVVESKFTE 137 + A + ++KGLKDLMD +V K E Sbjct: 408 DVVAAEEIEKGLKDLMDKDSIVHKKVQE 435 >5VOY-P nrPDB Length = 478 Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust. Identities = 14/44 (31%), Positives = 24/44 (54%) Query: 99 NLLNIRIQTYGETTAVDALQKGLKDLMDLCDVVESKFTEKIKSM 142 +LL I + T+ A + +QK L D +DL +V+ EK+ + Sbjct: 246 SLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRL 289 >5EXR-B nrPDB Length = 509 Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%) Query: 31 DMTGDEEQEEEPDREKIKLLTQATSEDGTSASFQIVEEDHTLGNALRYVIMKNPDVEFCG 90 D G + +P+ K KL + S G S +V+ H +Y M + +V+ CG Sbjct: 380 DYHGCPFRHSDPELLKQKLQSYKISPGGISQILDLVKGTHYQVACQKYFEMIH-NVDDCG 438 Query: 91 YSIPHPSE 98 +S+ HP++ Sbjct: 439 FSLNHPNQ 446 >5E2F-A nrPDB Length = 270 Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust. Identities = 10/21 (47%), Positives = 13/21 (61%) Query: 57 DGTSASFQIVEEDHTLGNALR 77 DG F+ DHTLG+A+R Sbjct: 105 DGVKREFESWNRDHTLGSAMR 125 >5OQL-d nrPDB Length = 446 Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 24/44 (54%) Query: 9 KTATEVTPQEPKHIQEEEEQDVDMTGDEEQEEEPDREKIKLLTQ 52 K ATE+ +E I+ EE + + + ++ + +REK L+ Q Sbjct: 402 KKATEIKREELAAIKRREENERKHSNKKYEKRKSEREKAVLVKQ 445 >4CZZ-B nrPDB Length = 553 Score = 25.8 bits (55), Expect = 7.7, Method: Compositional matrix adjust. Identities = 14/49 (28%), Positives = 24/49 (48%) Query: 94 PHPSENLLNIRIQTYGETTAVDALQKGLKDLMDLCDVVESKFTEKIKSM 142 P S +N R T + AV ++K KD + DV+ +K ++K+ Sbjct: 337 PPESNQKINARWTTEEQLLAVQGVRKYGKDFQAIADVIGNKTVGQVKNF 385 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 6CNF-K nrPDB 190 1e-49 3J1N-K nrPDB 132 7e-32 6J4X-K nrPDB 129 5e-31 6O9L-K nrPDB 118 9e-28 3H0G-K nrPDB 117 2e-27 2PMZ-L nrPDB 111 1e-25 2WB1-L nrPDB 108 6e-25 Sequences not found previously or not previously below threshold: 4QJV-B nrPDB 60 3e-10 1XPP-A nrPDB 44 2e-05 4NOI-A nrPDB 34 0.019 5WLC-LP nrPDB 32 0.065 1BWD-A nrPDB 32 0.090 3LM8-A nrPDB 32 0.11 1IW7-A nrPDB 31 0.18 2PLE-A nrPDB 31 0.21 5ZX3-A nrPDB 30 0.30 1HQM-A nrPDB 30 0.40 6CCE-A nrPDB 30 0.44 1Z2N-X nrPDB 29 0.68 6HIV-DD nrPDB 29 0.96 2JXM-B nrPDB 28 1.2 5A5T-C nrPDB 27 2.7 >6CNF-K nrPDB Length = 142 Score = 190 bits (483), Expect = 1e-49, Method: Composition-based stats. Identities = 142/142 (100%), Positives = 142/142 (100%) Query: 1 MTEDIEQKKTATEVTPQEPKHIQEEEEQDVDMTGDEEQEEEPDREKIKLLTQATSEDGTS 60 MTEDIEQKKTATEVTPQEPKHIQEEEEQDVDMTGDEEQEEEPDREKIKLLTQATSEDGTS Sbjct: 1 MTEDIEQKKTATEVTPQEPKHIQEEEEQDVDMTGDEEQEEEPDREKIKLLTQATSEDGTS 60 Query: 61 ASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDALQKG 120 ASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDALQKG Sbjct: 61 ASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDALQKG 120 Query: 121 LKDLMDLCDVVESKFTEKIKSM 142 LKDLMDLCDVVESKFTEKIKSM Sbjct: 121 LKDLMDLCDVVESKFTEKIKSM 142 >3J1N-K nrPDB Length = 120 Score = 132 bits (331), Expect = 7e-32, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 8/105 (7%) Query: 42 PDREKIKLLTQATS----EDGTSASFQI----VEEDHTLGNALRYVIMKNPDVEFCGYSI 93 PDR ++ LL + S + T A + +EDHTLGN +R ++ + V F Y + Sbjct: 4 PDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKV 63 Query: 94 PHPSENLLNIRIQTYGETTAVDALQKGLKDLMDLCDVVESKFTEK 138 HP +RIQT DAL+ +++ +++ F + Sbjct: 64 EHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETE 108 >6J4X-K nrPDB Length = 118 Score = 129 bits (323), Expect = 5e-31, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 2/96 (2%) Query: 43 DREKIKLLTQATSEDGTSASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLN 102 D K+K+ + + F+ EDHTL N LR + PDV F Y + HP Sbjct: 15 DVPKLKITPDSRVPNCIIIKFE--REDHTLANLLREELALYPDVTFVAYKVEHPLFANFV 72 Query: 103 IRIQTYGETTAVDALQKGLKDLMDLCDVVESKFTEK 138 +R+QT T AL++ +++ ++ KF E+ Sbjct: 73 MRLQTEEGTRPKQALERACASIINKLKTLDHKFNEE 108 >6O9L-K nrPDB Length = 117 Score = 118 bits (295), Expect = 9e-28, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 54/95 (56%) Query: 46 KIKLLTQATSEDGTSASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRI 105 + K+ ++ + F I +EDHTLGN ++ ++K+P V F GY +PHP E+ + IR+ Sbjct: 16 EKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRV 75 Query: 106 QTYGETTAVDALQKGLKDLMDLCDVVESKFTEKIK 140 QT + + +A + DL+ ++E +F IK Sbjct: 76 QTTPDYSPQEAFTNAITDLISELSLLEERFRVAIK 110 >3H0G-K nrPDB Length = 123 Score = 117 bits (292), Expect = 2e-27, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 7/105 (6%) Query: 41 EPDREKI-------KLLTQATSEDGTSASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSI 93 +P+R ++ K+ + S+ +A + +EDHTL N L ++ + V F GY + Sbjct: 3 QPERYELIELMGLPKVTYELDSKSPNAAVVTLEKEDHTLANMLANQLLSDERVLFAGYKV 62 Query: 94 PHPSENLLNIRIQTYGETTAVDALQKGLKDLMDLCDVVESKFTEK 138 PHP + +R+QT + + + K L+ + ++ F + Sbjct: 63 PHPLNHNFILRVQTVEDCSPKQVIVDAAKSLITHLEEIKVNFMRE 107 >2PMZ-L nrPDB Length = 92 Score = 111 bits (276), Expect = 1e-25, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 4/80 (5%) Query: 63 FQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDALQKGLK 122 +I EDHTLGN + + + V F Y PHP + + ++I T G T DAL K ++ Sbjct: 15 LEIEGEDHTLGNLIAGTLRRISGVSFASYYQPHPLSDKIIVKILTDGSITPKDALLKAIE 74 Query: 123 DLMDLCDVVESKFTEKIKSM 142 ++ + S + ++IK + Sbjct: 75 NIRGMT----SHYIDEIKGL 90 >2WB1-L nrPDB Length = 92 Score = 108 bits (270), Expect = 6e-25, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 4/80 (5%) Query: 63 FQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDALQKGLK 122 +I EDHTLGN + + K V F Y PHP + + ++I T G DAL K Sbjct: 15 LEIEGEDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVKILTDGSIAPKDALLKA-- 72 Query: 123 DLMDLCDVVESKFTEKIKSM 142 ++ V+ S + ++IK + Sbjct: 73 --IETVRVMASHYIDEIKGL 90 >4QJV-B nrPDB Length = 94 Score = 60.2 bits (144), Expect = 3e-10, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 2/84 (2%) Query: 59 TSASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSE--NLLNIRIQTYGETTAVDA 116 F + EDHT N L + +N V F GY+I HP ++ T G+ T A Sbjct: 11 NLLEFYLEGEDHTFANLLTETLHENEHVTFAGYTIEHPITMARKPRFKVVTDGKITPEKA 70 Query: 117 LQKGLKDLMDLCDVVESKFTEKIK 140 L++ + + D V + I+ Sbjct: 71 LEEAAQKIFDRAREVLEAWKAAIE 94 >1XPP-A nrPDB Length = 115 Score = 44.4 bits (103), Expect = 2e-05, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 43/86 (50%), Gaps = 1/86 (1%) Query: 55 SEDGTSASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAV 114 S++ S + +++ D+TL L I+K+ V+ Y I HP + I ++ Sbjct: 17 SKEKNSITVEMINYDNTLLRTLVEEILKDDQVDEARYYIKHPVIDNPQIYVRVKSG-KPQ 75 Query: 115 DALQKGLKDLMDLCDVVESKFTEKIK 140 A+++ ++ L L + + ++F ++ + Sbjct: 76 SAIKRAVRKLSKLYEDLGTQFQKEFQ 101 >4NOI-A nrPDB Length = 361 Score = 34.4 bits (77), Expect = 0.019, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 6/68 (8%) Query: 76 LRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDALQKGLKDLMDLCDVVE--S 133 +R V F +P + + + T G+ T +A Q L+ + V + + Sbjct: 200 VREATYDIEKVLF----EDNPDYEKVVLTVTTDGQITPNEAFQNALEAMYKQLSVFDKIT 255 Query: 134 KFTEKIKS 141 IK+ Sbjct: 256 NVRSVIKN 263 >5WLC-LP nrPDB Length = 440 Score = 32.5 bits (72), Expect = 0.065, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query: 25 EEEQDVDMTGDEEQEEEPDREKIKLLTQATSEDGTSASFQIVEED-HTLGNA 75 E EQ++DM +++ + PD EK L +T + ++ E D LGNA Sbjct: 208 EREQELDMQNEQKNNQAPDEEKSHLQVPSTGDSMKDKLNELPEADISVLGNA 259 >1BWD-A nrPDB Length = 348 Score = 32.1 bits (71), Expect = 0.090, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 23/115 (20%) Query: 30 VDMTGDEEQEEEPDREKIKLLTQATSEDGTSASFQIVEEDHTLGNALRYVIMKNPDVEFC 89 V+ GD E +E+ + D + EE H L + K Sbjct: 36 VEYAGDYESQEQ--------IPSGAYPD--RVLKETEEELHVL----AAELTK----LGV 77 Query: 90 GYSIPHPSENLLNIRI---QTYG--ETTAVDALQKGLKDLMDLCDVVESKFTEKI 139 P P ++ I+ +T G + D L + +++ + S+F E + Sbjct: 78 TVRRPGPRDHSALIKTPDWETDGFHDYCPRDGLLSVGQTIIETPMALRSRFLESL 132 >3LM8-A nrPDB Length = 222 Score = 31.7 bits (70), Expect = 0.11, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 24/73 (32%) Query: 14 VTPQEPKHIQ-----------EEEEQDVDMTGDEEQEEEPDREKIKLLTQATSEDGTSAS 62 +T QE + I+ E+++ D+D+ D E++PD +I +T + Sbjct: 55 ITEQERRRIEKAAPALHVYQAEKDQTDLDLALDWALEKQPDIIQIFGITGGRA------- 107 Query: 63 FQIVEEDHTLGNA 75 DH LGN Sbjct: 108 ------DHFLGNI 114 >1IW7-A nrPDB Length = 315 Score = 30.9 bits (68), Expect = 0.18, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 17/30 (56%) Query: 99 NLLNIRIQTYGETTAVDALQKGLKDLMDLC 128 + L +RI T G T ++AL + ++ L + Sbjct: 193 DKLTLRIWTDGSVTPLEALNQAVEILREHL 222 >2PLE-A nrPDB Length = 105 Score = 30.9 bits (68), Expect = 0.21, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 8/75 (10%) Query: 38 QEEEPDREKIKLLTQATSEDGTSASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPS 97 + EP+ I + + Q + LGN+ + V+ Y HP Sbjct: 38 KRNEPNSYAISFRAEGKIKHC---RVQQEGQTVMLGNS-----EFDSLVDLISYYEKHPL 89 Query: 98 ENLLNIRIQTYGETT 112 + +R E + Sbjct: 90 YRKMKLRYPINEENS 104 >5ZX3-A nrPDB Length = 368 Score = 30.2 bits (66), Expect = 0.30, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 20/45 (44%), Gaps = 1/45 (2%) Query: 98 ENLLNIRIQTYGETTAVDALQKGLKDLMDLCDVVESKFTEKIKSM 142 + L + ++T + DAL K L++L + + + + + Sbjct: 210 FDKLILDVETKNSISPRDALASAGKTLVELFG-LARELNVEAEGI 253 >1HQM-A nrPDB Length = 313 Score = 29.8 bits (65), Expect = 0.40, Method: Composition-based stats. Identities = 9/31 (29%), Positives = 17/31 (54%) Query: 99 NLLNIRIQTYGETTAVDALQKGLKDLMDLCD 129 + L +RI T G T ++AL + + L + + Sbjct: 192 DKLTLRIWTDGSVTPLEALNQAVAILKEHLN 222 >6CCE-A nrPDB Length = 350 Score = 29.8 bits (65), Expect = 0.44, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 6/57 (10%) Query: 83 NPDVEFCGYSIP------HPSENLLNIRIQTYGETTAVDALQKGLKDLMDLCDVVES 133 V Y + + L I ++T + DAL L++L + Sbjct: 168 YSPVLKVTYKVEATRVEQRTDFDKLIIDVETKNSISPRDALASAGGTLVELFGLARE 224 >1Z2N-X nrPDB Length = 324 Score = 29.0 bits (63), Expect = 0.68, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%) Query: 11 ATEVTPQEPKHIQEEEEQDVDMTGDEEQEEEPDREKIKLLTQATSEDGTSASFQIV 66 +TE+ +EP I + V DE ++ E D K+ L + D S+ +I Sbjct: 48 STELPDKEPNAIITKRTHPVGKMADEMRKYEKDHPKVLFLESSAIHDMMSSREEIN 103 >6HIV-DD nrPDB Length = 812 Score = 28.6 bits (62), Expect = 0.96, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 23/55 (41%) Query: 88 FCGYSIPHPSENLLNIRIQTYGETTAVDALQKGLKDLMDLCDVVESKFTEKIKSM 142 F H L NIR+ + T +AL L+ ++D + + +K++ Sbjct: 130 FPSEYKKHFLSFLSNIRMSSGSATIPQEALHWLLRMIVDNFNPQHVHYIAAMKTL 184 >2JXM-B nrPDB Length = 249 Score = 28.2 bits (61), Expect = 1.2, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 38/108 (35%), Gaps = 3/108 (2%) Query: 35 DEEQEEEPDREKIKLLTQATSEDGTSASFQIVEEDH--TLGNALRYVIMKNPDVEFCGYS 92 DEE EE + + +++ + + ED+ + L + V F YS Sbjct: 90 DEELMEEVGDFYYLVTPYSETDENILLAGPLPGEDYQEMIFPILSPNPATDAGVYFGKYS 149 Query: 93 IPHPSENLLNIRIQTYGETTAVDALQKGLKDLMDLCDVVESKFTEKIK 140 I H N ++ GE + +A + + + F I+ Sbjct: 150 I-HLGGNRGRGQVYPTGELSNNNAFSASIAGTIAAIEDNGFGFDVTIQ 196 >5A5T-C nrPDB Length = 843 Score = 27.1 bits (58), Expect = 2.7, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Query: 4 DIEQKKTATEVTP-QEPKHIQEEEEQDVDMTGDEEQEEEPDREKIKLLTQATSEDGTSAS 62 D E T + P Q E+ E+D + + DE+++E+ L +A + G S Sbjct: 81 DFESHITNYKQNPEQSADEDAEKNEEDSEGSSDEDEDEDGVSAAAFLKKKAEAPSGESRK 140 Query: 63 F 63 F Sbjct: 141 F 141 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.300 0.123 0.304 Lambda K H 0.267 0.0381 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,725,706 Number of Sequences: 36641 Number of extensions: 163684 Number of successful extensions: 850 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 33 Number of HSP's that attempted gapping in prelim test: 602 Number of HSP's gapped (non-prelim): 208 length of query: 142 length of database: 10,336,785 effective HSP length: 87 effective length of query: 55 effective length of database: 7,149,018 effective search space: 393195990 effective search space used: 393195990 T: 11 A: 40 X1: 16 ( 6.9 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.2 bits) S2: 54 (25.5 bits)