BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P27707 (260 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 4Q1A-A nrPDB 532 e-152 2A30-A nrPDB 503 e-143 2OCP-A nrPDB 253 5e-68 2VP0-A nrPDB 134 3e-32 2JAQ-A nrPDB 54 5e-08 5GPN-q nrPDB 36 0.019 5LNK-k nrPDB 35 0.023 4TMK-A nrPDB 35 0.029 6G2J-O nrPDB 33 0.17 1UA2-A nrPDB 31 0.43 4F7W-A nrPDB 31 0.52 1ESM-A nrPDB 31 0.57 3AVQ-A nrPDB 29 1.7 3TQC-A nrPDB 29 1.8 3LH4-A nrPDB 29 2.0 3ATG-A nrPDB 29 2.0 3O4F-A nrPDB 28 2.7 4CRL-A nrPDB 28 3.2 2CYC-A nrPDB 28 3.5 4LQ3-A nrPDB 27 6.0 >4Q1A-A nrPDB Length = 280 Score = 532 bits (1371), Expect = e-152, Method: Compositional matrix adjust. Identities = 255/260 (98%), Positives = 255/260 (98%) Query: 1 MATPPKRSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCN 60 MATPPKRS PSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQL EDWEVVPEPVARW N Sbjct: 21 MATPPKRSSPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLSEDWEVVPEPVARWSN 80 Query: 61 VQSTQDEFEELTMSQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAE 120 VQSTQDEFEELTM QKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAE Sbjct: 81 VQSTQDEFEELTMEQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAE 140 Query: 121 KPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQA 180 KPVLFFERSVYSDRYIFASNLYESE MNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQA Sbjct: 141 KPVLFFERSVYSDRYIFASNLYESESMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQA 200 Query: 181 TPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNE 240 TPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNE Sbjct: 201 TPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNE 260 Query: 241 DFKDKYESLVEKVKEFLSTL 260 DFKDKYESLVEKVKEFLSTL Sbjct: 261 DFKDKYESLVEKVKEFLSTL 280 >2A30-A nrPDB Length = 248 Score = 503 bits (1296), Expect = e-143, Method: Compositional matrix adjust. Identities = 245/260 (94%), Positives = 245/260 (94%), Gaps = 15/260 (5%) Query: 1 MATPPKRSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCN 60 MATPPKRSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCN Sbjct: 4 MATPPKRSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCN 63 Query: 61 VQSTQDEFEELTMSQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAE 120 VQST NVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAE Sbjct: 64 VQST---------------NVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAE 108 Query: 121 KPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQA 180 KPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQA Sbjct: 109 KPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQA 168 Query: 181 TPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNE 240 TPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNE Sbjct: 169 TPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNE 228 Query: 241 DFKDKYESLVEKVKEFLSTL 260 DFKDKYESLVEKVKEFLSTL Sbjct: 229 DFKDKYESLVEKVKEFLSTL 248 >2OCP-A nrPDB Length = 241 Score = 253 bits (646), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 120/242 (49%), Positives = 167/242 (69%), Gaps = 6/242 (2%) Query: 22 KKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNV 81 +++SIEGNIA GKSTFV +L + +W V EPVA W N+Q+ ++ + ++ GN+ Sbjct: 3 RRLSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQAAGNQ---KACTAQSLGNL 59 Query: 82 LQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNL 141 L MMY +P RWS+TFQT++ LSR++ QL KL A KPV FERSVYSDRYIFA NL Sbjct: 60 LDMMYREPARWSYTFQTFSFLSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFAKNL 119 Query: 142 YESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIP 201 +E+ +++ EW IYQDWH ++ +F + L G IYLQA+P+ CL R+Y R R EE+GI Sbjct: 120 FENGSLSDIEWHIYQDWHSFLLWEFASRITLHGFIYLQASPQVCLKRLYQRAREEEKGIE 179 Query: 202 LEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKD---KYESLVEKVKEFLS 258 L YLE+LH +HE+WL+H+T K +F+ L +P+L LDVN+DF + K E L+ +V F+ Sbjct: 180 LAYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDDFSEEVTKQEDLMREVNTFVK 239 Query: 259 TL 260 L Sbjct: 240 NL 241 >2VP0-A nrPDB Length = 250 Score = 134 bits (338), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 73/229 (31%), Positives = 125/229 (54%), Gaps = 30/229 (13%) Query: 16 SEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQ 75 +EGT+ + IEGNI +GK+T++N ++ D ++ EPV +W NV Sbjct: 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNV-------------- 60 Query: 76 KNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRY 135 NG N+L++MY+ P++W+ FQ+Y L+ +++ A N KLK ERS++S RY Sbjct: 61 -NGVNLLELMYKDPKKWAMPFQSYVTLTMLQSHTAPTNKKLK-------IMERSIFSARY 112 Query: 136 IFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRN 195 F N+ + + + + ++W+ ++ ++ D IIYL+ +PE RI R R+ Sbjct: 113 CFVENMRRNGSLEQGMYNTLEEWYKFIEESI--HVQADLIIYLRTSPEVAYERIRQRARS 170 Query: 196 EEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKD 244 EE +PL+YL++LH HE WL+H+ Q +L LD + + ++ Sbjct: 171 EESCVPLKYLQELHELHEDWLIHQRRP------QSCKVLVLDADLNLEN 213 >2JAQ-A nrPDB Length = 205 Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 61/240 (25%), Positives = 106/240 (44%), Gaps = 52/240 (21%) Query: 23 KISIEGNIAAGKSTF-VNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNV 81 KI+I G + AGKST I K+L +E+ EPV Sbjct: 2 KIAIFGTVGAGKSTISAEISKKLG--YEIFKEPVEE---------------------NPY 38 Query: 82 LQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEK-PVLFFERSVYSDRYIFASN 140 + Y+ ++ F Q Y +R + +LK A+ + F+R++ D IF Sbjct: 39 FEQYYKDLKKTVFKMQIYMLTARSK--------QLKQAKNLENIIFDRTLLEDP-IFMKV 89 Query: 141 LYESECMNETEWTIYQDWHDWMNNQFGQSLEL-------DGIIYLQATPETCLHRIYLRG 193 Y+ +++T++ Y D++ NN ++L++ D +IYL+ + +T + RI RG Sbjct: 90 NYDLNNVDQTDYNTYIDFY---NNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKRG 146 Query: 194 RNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKV 253 R+EE I EY E L+ +E + +D+ P +D D K + E ++ K+ Sbjct: 147 RSEELLIGEEYWETLNKNYEEFYKQNV----YDF----PFFVVDAELDVKTQIELIMNKL 198 >5GPN-q nrPDB Length = 357 Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 10/124 (8%) Query: 22 KKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNV 81 K I+++GNI +GK + +++ E + P A ST + + L + Q +G Sbjct: 60 KVITVDGNICSGKG---RLAREIAEKLGLRHFPEAGIHYADSTTGDGKPLDV-QLSGNCS 115 Query: 82 LQMMYEKP---ERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFA 138 L+ Y+ P + S+ Q++ SR+ +L L + VL ERS+YSD ++F Sbjct: 116 LEKFYDDPKSNDGNSYRLQSWLYASRLLQYADALEHLLSTGQGVVL--ERSIYSD-FVFL 172 Query: 139 SNLY 142 +Y Sbjct: 173 EAMY 176 >5LNK-k nrPDB Length = 320 Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 10/124 (8%) Query: 22 KKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNV 81 K I+++GNI +GKS + K++ E + P A ST + + L + + +G Sbjct: 23 KLITVDGNICSGKS---KLAKEVAEKLGLKHFPEAGIHYADSTTGDGKPLPV-RFSGNCS 78 Query: 82 LQMMYEKP---ERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFA 138 L+ Y+ P + S+ Q + SR+ +L L + VL ERS+YSD ++F Sbjct: 79 LEKFYDDPKSNDGNSYRLQAWLYASRLLQYADALEHLLSTGQGVVL--ERSIYSD-FVFL 135 Query: 139 SNLY 142 +Y Sbjct: 136 EAMY 139 >4TMK-A nrPDB Length = 213 Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 67/174 (38%), Gaps = 21/174 (12%) Query: 20 RIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGG 79 R K I IEG AGK+T N++ + E + R ++ L + K+ G Sbjct: 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVG 61 Query: 80 NVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFAS 139 + +++ +K E F YA R QL ++ KP L V DR+ ++ Sbjct: 62 D--EVITDKAEVLMF----YAA----RVQL------VETVIKPALANGTWVIGDRHDLST 105 Query: 140 NLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRG 193 Y+ + + D + F L L YL TPE L R RG Sbjct: 106 QAYQGGGRG-IDQHMLATLRDAVLGDFRPDLTL----YLDVTPEVGLKRARARG 154 >6G2J-O nrPDB Length = 355 Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust. Identities = 42/194 (21%), Positives = 81/194 (41%), Gaps = 25/194 (12%) Query: 24 ISIEGNIAAGKSTFVN-ILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVL 82 I+++GNI +GK+ I +QL + PE ++ + + ++ S G L Sbjct: 60 ITVDGNICSGKNKLAKEIAQQL--GMKHYPEAGIQYSSTTTGDGRPLDIEFS---GSCSL 114 Query: 83 QMMYEKP---ERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFAS 139 + Y+ P + S+ Q++ SR+ +L L + VL ERS+YSD ++F Sbjct: 115 EKFYDDPKSNDGNSYRLQSWLYASRLLQYADALEHLLSTGQGVVL--ERSIYSD-FVFLE 171 Query: 140 NLY-----ESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGR 194 +Y +C++ +++ + L +IY+ RI +G Sbjct: 172 AMYNQGYIRKQCVDH--------YNEIKRLTLPEYLPPHAVIYIDVPVPEVQSRIQKKGD 223 Query: 195 NEEQGIPLEYLEKL 208 E + YL+ + Sbjct: 224 PHEMKVTSAYLQDI 237 >1UA2-A nrPDB Length = 346 Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust. Identities = 16/35 (45%), Positives = 20/35 (57%) Query: 202 LEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTL 236 L L+ L Y H+ W+LHR LK N L E +L L Sbjct: 119 LMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKL 153 >4F7W-A nrPDB Length = 334 Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Query: 15 SSEGTRIKKI-SIEGNIAAGKSTFVNILKQLCEDW 48 + G RI I SI G++A GKST +L+ L W Sbjct: 99 GTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRW 133 >1ESM-A nrPDB Length = 316 Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Query: 15 SSEGTRIKKI-SIEGNIAAGKSTFVNILKQLCEDW 48 + G RI I SI G++A GKST +L+ L W Sbjct: 81 GTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRW 115 >3AVQ-A nrPDB Length = 322 Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust. Identities = 11/29 (37%), Positives = 17/29 (58%) Query: 24 ISIEGNIAAGKSTFVNILKQLCEDWEVVP 52 I + G++A GKST +L+ L W+ P Sbjct: 103 IGVAGSVAVGKSTTARVLQALLARWDHHP 131 >3TQC-A nrPDB Length = 321 Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust. Identities = 12/25 (48%), Positives = 15/25 (60%) Query: 24 ISIEGNIAAGKSTFVNILKQLCEDW 48 I I G++A GKST +LK L W Sbjct: 95 IGIAGSVAVGKSTTSRVLKALLSRW 119 >3LH4-A nrPDB Length = 115 Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 4/46 (8%) Query: 189 IYLRGRNEE---QGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEV 231 + LRG E Q P EYLE HY +W + KT+FD + EV Sbjct: 3 LALRGGYRERSNQDDP-EYLELAHYATSTWSAQQPGKTHFDTVVEV 47 >3ATG-A nrPDB Length = 256 Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust. Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%) Query: 77 NGGNVLQMMYEKPERWSF--TFQTYAC 101 +GG+ + MY+ P+ WSF TF T+A Sbjct: 143 SGGSGITGMYQHPQGWSFADTFHTFAV 169 >3O4F-A nrPDB Length = 294 Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust. Identities = 9/24 (37%), Positives = 17/24 (70%) Query: 158 WHDWMNNQFGQSLELDGIIYLQAT 181 WH+ +++QFGQ +D ++Y + T Sbjct: 13 WHETLHDQFGQYFAVDNVLYHEKT 36 >4CRL-A nrPDB Length = 406 Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust. Identities = 10/20 (50%), Positives = 15/20 (75%) Query: 203 EYLEKLHYKHESWLLHRTLK 222 + L+ +HY H +W+LHR LK Sbjct: 137 QILDGIHYLHANWVLHRDLK 156 >2CYC-A nrPDB Length = 375 Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust. Identities = 8/16 (50%), Positives = 12/16 (75%) Query: 157 DWHDWMNNQFGQSLEL 172 DWH W+N++ G LE+ Sbjct: 74 DWHSWINDKLGGDLEV 89 >4LQ3-A nrPDB Length = 526 Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 15/71 (21%) Query: 71 LTMSQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRA-------------QLASLNGKLK 117 L ++K NVL+ + PE+WSFT Q A L + + S GKL Sbjct: 84 LEAAKKTIINVLEQTIDPPEKWSFT-QACASLDKTTSSGHPHHMRKNDCWNGESFTGKLA 142 Query: 118 D-AEKPVLFFE 127 D A K L FE Sbjct: 143 DQASKANLMFE 153 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 4Q1A-A nrPDB 429 e-121 2A30-A nrPDB 413 e-116 2OCP-A nrPDB 341 2e-94 2VP0-A nrPDB 269 8e-73 2JAQ-A nrPDB 192 9e-50 Sequences not found previously or not previously below threshold: 5LNK-k nrPDB 61 7e-10 6G2J-O nrPDB 60 9e-10 5XTD-w nrPDB 60 9e-10 5GPN-q nrPDB 52 2e-07 3LV8-A nrPDB 40 0.001 4TMK-A nrPDB 39 0.001 4MQB-A nrPDB 36 0.016 4RZX-A nrPDB 34 0.068 5LC5-O nrPDB 33 0.10 3A4L-A nrPDB 33 0.11 2IF2-A nrPDB 33 0.14 6N9A-E nrPDB 32 0.31 2KI5-A nrPDB 32 0.34 1S49-A nrPDB 31 0.41 4LV5-B nrPDB 31 0.42 2CJQ-A nrPDB 31 0.45 4MRS-A nrPDB 31 0.58 4CVN-A nrPDB 30 0.86 3B5X-A nrPDB 30 0.89 4LQ3-A nrPDB 30 1.2 6HZK-A nrPDB 30 1.2 4F7W-A nrPDB 30 1.3 1ESM-A nrPDB 30 1.3 5NRN-A nrPDB 29 1.5 2VG9-A nrPDB 29 1.7 5AJ3-G nrPDB 29 2.3 5J5T-A nrPDB 29 2.6 3WMF-A nrPDB 28 4.4 >4Q1A-A nrPDB Length = 280 Score = 429 bits (1102), Expect = e-121, Method: Composition-based stats. Identities = 255/260 (98%), Positives = 255/260 (98%) Query: 1 MATPPKRSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCN 60 MATPPKRS PSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQL EDWEVVPEPVARW N Sbjct: 21 MATPPKRSSPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLSEDWEVVPEPVARWSN 80 Query: 61 VQSTQDEFEELTMSQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAE 120 VQSTQDEFEELTM QKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAE Sbjct: 81 VQSTQDEFEELTMEQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAE 140 Query: 121 KPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQA 180 KPVLFFERSVYSDRYIFASNLYESE MNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQA Sbjct: 141 KPVLFFERSVYSDRYIFASNLYESESMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQA 200 Query: 181 TPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNE 240 TPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNE Sbjct: 201 TPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNE 260 Query: 241 DFKDKYESLVEKVKEFLSTL 260 DFKDKYESLVEKVKEFLSTL Sbjct: 261 DFKDKYESLVEKVKEFLSTL 280 >2A30-A nrPDB Length = 248 Score = 413 bits (1061), Expect = e-116, Method: Composition-based stats. Identities = 245/260 (94%), Positives = 245/260 (94%), Gaps = 15/260 (5%) Query: 1 MATPPKRSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCN 60 MATPPKRSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCN Sbjct: 4 MATPPKRSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCN 63 Query: 61 VQSTQDEFEELTMSQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAE 120 VQST NVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAE Sbjct: 64 VQST---------------NVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAE 108 Query: 121 KPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQA 180 KPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQA Sbjct: 109 KPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQA 168 Query: 181 TPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNE 240 TPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNE Sbjct: 169 TPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNE 228 Query: 241 DFKDKYESLVEKVKEFLSTL 260 DFKDKYESLVEKVKEFLSTL Sbjct: 229 DFKDKYESLVEKVKEFLSTL 248 >2OCP-A nrPDB Length = 241 Score = 341 bits (874), Expect = 2e-94, Method: Composition-based stats. Identities = 120/243 (49%), Positives = 167/243 (68%), Gaps = 6/243 (2%) Query: 21 IKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGN 80 +++SIEGNIA GKSTFV +L + +W V EPVA W N+Q+ ++ + ++ GN Sbjct: 2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQAAGNQ---KACTAQSLGN 58 Query: 81 VLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASN 140 +L MMY +P RWS+TFQT++ LSR++ QL KL A KPV FERSVYSDRYIFA N Sbjct: 59 LLDMMYREPARWSYTFQTFSFLSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFAKN 118 Query: 141 LYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGI 200 L+E+ +++ EW IYQDWH ++ +F + L G IYLQA+P+ CL R+Y R R EE+GI Sbjct: 119 LFENGSLSDIEWHIYQDWHSFLLWEFASRITLHGFIYLQASPQVCLKRLYQRAREEEKGI 178 Query: 201 PLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKD---KYESLVEKVKEFL 257 L YLE+LH +HE+WL+H+T K +F+ L +P+L LDVN+DF + K E L+ +V F+ Sbjct: 179 ELAYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDDFSEEVTKQEDLMREVNTFV 238 Query: 258 STL 260 L Sbjct: 239 KNL 241 >2VP0-A nrPDB Length = 250 Score = 269 bits (688), Expect = 8e-73, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 125/229 (54%), Gaps = 30/229 (13%) Query: 16 SEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQ 75 +EGT+ + IEGNI +GK+T++N ++ D ++ EPV +W NV Sbjct: 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNV-------------- 60 Query: 76 KNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRY 135 NG N+L++MY+ P++W+ FQ+Y L+ +++ A N KLK ERS++S RY Sbjct: 61 -NGVNLLELMYKDPKKWAMPFQSYVTLTMLQSHTAPTNKKLK-------IMERSIFSARY 112 Query: 136 IFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRN 195 F N+ + + + + ++W+ ++ ++ D IIYL+ +PE RI R R+ Sbjct: 113 CFVENMRRNGSLEQGMYNTLEEWYKFIEESI--HVQADLIIYLRTSPEVAYERIRQRARS 170 Query: 196 EEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKD 244 EE +PL+YL++LH HE WL+H+ Q +L LD + + ++ Sbjct: 171 EESCVPLKYLQELHELHEDWLIHQRRP------QSCKVLVLDADLNLEN 213 >2JAQ-A nrPDB Length = 205 Score = 192 bits (488), Expect = 9e-50, Method: Composition-based stats. Identities = 61/242 (25%), Positives = 106/242 (43%), Gaps = 52/242 (21%) Query: 23 KISIEGNIAAGKSTF-VNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNV 81 KI+I G + AGKST I K+L +E+ EPV Sbjct: 2 KIAIFGTVGAGKSTISAEISKKLG--YEIFKEPVEE---------------------NPY 38 Query: 82 LQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEK-PVLFFERSVYSDRYIFASN 140 + Y+ ++ F Q Y +R + +LK A+ + F+R++ D IF Sbjct: 39 FEQYYKDLKKTVFKMQIYMLTARSK--------QLKQAKNLENIIFDRTLLEDP-IFMKV 89 Query: 141 LYESECMNETEWTIYQDWHDWMNNQFGQSLEL-------DGIIYLQATPETCLHRIYLRG 193 Y+ +++T++ Y D++ NN ++L++ D +IYL+ + +T + RI RG Sbjct: 90 NYDLNNVDQTDYNTYIDFY---NNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKRG 146 Query: 194 RNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKV 253 R+EE I EY E L+ +E + +D+ P +D D K + E ++ K+ Sbjct: 147 RSEELLIGEEYWETLNKNYEEFYKQNV----YDF----PFFVVDAELDVKTQIELIMNKL 198 Query: 254 KE 255 Sbjct: 199 NS 200 >5LNK-k nrPDB Length = 320 Score = 60.7 bits (145), Expect = 7e-10, Method: Composition-based stats. Identities = 45/199 (22%), Positives = 81/199 (40%), Gaps = 13/199 (6%) Query: 22 KKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNV 81 K I+++GNI +GKS + K++ E + P A ST + + L + + +G Sbjct: 23 KLITVDGNICSGKS---KLAKEVAEKLGLKHFPEAGIHYADSTTGDGKPLPV-RFSGNCS 78 Query: 82 LQMMYEKPERW---SFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFA 138 L+ Y+ P+ S+ Q + SR+ +L L + + ERS+YSD ++F Sbjct: 79 LEKFYDDPKSNDGNSYRLQAWLYASRLLQYADALEHLLSTGQG--VVLERSIYSD-FVFL 135 Query: 139 SNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQ 198 +Y + + Y + L +IY+ RI +G E Sbjct: 136 EAMYRQGFIRKQCVDHYNQVKKV---TVCEYLPPHVVIYVDVPVSEVQSRIQKKGNPHEM 192 Query: 199 GIPLEYLEKLHYKHESWLL 217 I YL+ + ++ L Sbjct: 193 KITSAYLQDIENVYKGTFL 211 >6G2J-O nrPDB Length = 355 Score = 60.3 bits (144), Expect = 9e-10, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 81/220 (36%), Gaps = 22/220 (10%) Query: 22 KKISIEGNIAAGKSTFV-NILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGN 80 + I+++GNI +GK+ I +QL + ST + +G Sbjct: 58 RVITVDGNICSGKNKLAKEIAQQLG-----MKHYPEAGIQYSSTTTGDGRPLDIEFSGSC 112 Query: 81 VLQMMYEKPERW---SFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIF 137 L+ Y+ P+ S+ Q++ SR+ +L L + + ERS+YSD ++F Sbjct: 113 SLEKFYDDPKSNDGNSYRLQSWLYASRLLQYADALEHLLSTGQG--VVLERSIYSD-FVF 169 Query: 138 ASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEE 197 +Y + + Y + + L +IY+ RI +G E Sbjct: 170 LEAMYNQGYIRKQCVDHYNEIKRL---TLPEYLPPHAVIYIDVPVPEVQSRIQKKGDPHE 226 Query: 198 QGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLD 237 + YL+ + ++ L + + +L D Sbjct: 227 MKVTSAYLQDIENAYKKTFLPKMSEM-------CEVLVYD 259 >5XTD-w nrPDB Length = 320 Score = 60.3 bits (144), Expect = 9e-10, Method: Composition-based stats. Identities = 39/202 (19%), Positives = 73/202 (36%), Gaps = 15/202 (7%) Query: 20 RIKKISIEGNIAAGKSTFV-NILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNG 78 R + I+++GNI GK I ++L + + + + NG Sbjct: 21 RSRVITVDGNICTGKGKLAKEIAEKLG-----FKHFPEAGIHYPDSTTGDGKPLATDYNG 75 Query: 79 GNVLQMMYEKPERW---SFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRY 135 L+ Y+ P S+ Q++ SR+ +L L + + ERS++SD + Sbjct: 76 NCSLEKFYDDPRSNDGNSYRLQSWLYSSRLLQYSDALEHLLTTGQG--VVLERSIFSD-F 132 Query: 136 IFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRN 195 +F +Y + + Y + L +IY+ RI +G Sbjct: 133 VFLEAMYNQGFIRKQCVDHYNEVKSV---TICDYLPPHLVIYIDVPVPEVQRRIQKKGDP 189 Query: 196 EEQGIPLEYLEKLHYKHESWLL 217 E I YL+ + ++ L Sbjct: 190 HEMKITSAYLQDIENAYKKTFL 211 >5GPN-q nrPDB Length = 357 Score = 52.2 bits (123), Expect = 2e-07, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 79/200 (39%), Gaps = 15/200 (7%) Query: 22 KKISIEGNIAAGKSTFV-NILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGN 80 K I+++GNI +GK I ++L PE + + + + ++ Q +G Sbjct: 60 KVITVDGNICSGKGRLAREIAEKLGLRH--FPEAGIHYADSTTGDGKPLDV---QLSGNC 114 Query: 81 VLQMMYEKPERW---SFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIF 137 L+ Y+ P+ S+ Q++ SR+ +L L + + ERS+YSD ++F Sbjct: 115 SLEKFYDDPKSNDGNSYRLQSWLYASRLLQYADALEHLLSTGQG--VVLERSIYSD-FVF 171 Query: 138 ASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEE 197 +Y + + Y + ++ + + + RI +G E Sbjct: 172 LEAMYRQGFIRKQCVEHYNEVKKVTACEYLPPHVVVYVDVPVPEIQ---SRIQKKGNPHE 228 Query: 198 QGIPLEYLEKLHYKHESWLL 217 I YL+ + ++ L Sbjct: 229 MKITAAYLQDIENAYKKTFL 248 >3LV8-A nrPDB Length = 236 Score = 39.9 bits (91), Expect = 0.001, Method: Composition-based stats. Identities = 42/245 (17%), Positives = 87/245 (35%), Gaps = 33/245 (13%) Query: 16 SEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQ 75 S K I IEG AGKST + ++ V Q+ + +T ++ Sbjct: 22 SNAMNAKFIVIEGLEGAGKSTAIQVV-------------VETLQ-----QNGIDHITRTR 63 Query: 76 KNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRY 135 + GG +L + + ++ + A+ +++ KP L V DR+ Sbjct: 64 EPGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQLVENVIKPALARGEWVVGDRH 123 Query: 136 IFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRN 195 +S Y+ + + Q + + D +YL P+ L R RGR Sbjct: 124 DMSSQAYQGGG-RQIAPSTMQS----LKQTALGDFKPDLTLYLDIDPKLGLER--ARGRG 176 Query: 196 EEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKE 255 E L+++ S+ + + ++ +D + + + +++ Sbjct: 177 E--------LDRIEKMDISFFERARERYLELANSDDSVVMIDAAQSIEQVTADIRRALQD 228 Query: 256 FLSTL 260 +LS + Sbjct: 229 WLSQV 233 >4TMK-A nrPDB Length = 213 Score = 39.5 bits (90), Expect = 0.001, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 91/245 (37%), Gaps = 39/245 (15%) Query: 20 RIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGG 79 R K I IEG AGK+T N++ + E + R ++ L + K+ G Sbjct: 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVG 61 Query: 80 NVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFAS 139 + +++ +K E F YA R QL KP L V DR+ ++ Sbjct: 62 D--EVITDKAEVLMF----YA----ARVQLVET------VIKPALANGTWVIGDRHDLST 105 Query: 140 NLYESEC--MNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEE 197 Y+ +++ +D D +YL TPE L R RG Sbjct: 106 QAYQGGGRGIDQHMLATLRD-------AVLGDFRPDLTLYLDVTPEVGLKRARARG---- 154 Query: 198 QGIPLEYLEKLHYKHESWLLHRTLKTNFDYL--QEVPILTLDVNEDFKDKYESLVEKVKE 255 L+ +E+ ES+ + + L Q+ I T+D + + +++ V Sbjct: 155 ---ELDRIEQ-----ESFDFFNRTRARYLELAAQDKSIHTIDATQPLEAVMDAIRTTVTH 206 Query: 256 FLSTL 260 ++ L Sbjct: 207 WVKEL 211 >4MQB-A nrPDB Length = 208 Score = 36.0 bits (81), Expect = 0.016, Method: Composition-based stats. Identities = 43/240 (17%), Positives = 92/240 (38%), Gaps = 42/240 (17%) Query: 24 ISIEGNIAAGKSTFVN-ILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVL 82 I+ EG +GK+T +N + +L +D++V+ + R T +E ++ + + Sbjct: 8 ITFEGPEGSGKTTVINEVYHRLVKDYDVI---MTREPGGVPTGEEIRKIVLEGNDMDIRT 64 Query: 83 QMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLY 142 + M +A R L + LK+ + V DRYI +S Y Sbjct: 65 EAM------------LFAASRREHLVLKVIPA-LKEGK--------VVLCDRYIDSSLAY 103 Query: 143 ESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIP- 201 + I + +N L D IYL + E RI R++ + Sbjct: 104 QGYARG-----IGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQE 158 Query: 202 -LEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKEFLSTL 260 L++ EK+ ++ ++H + +++ ++ ++ E + + ++L + Sbjct: 159 DLKFHEKVIEGYQE-IIHN---------ESQRFKSVNADQPLENVVEDTYQTIIKYLEKI 208 >4RZX-A nrPDB Length = 213 Score = 34.1 bits (76), Expect = 0.068, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 33/164 (20%) Query: 24 ISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVLQ 83 I+ EG +GKS+ +LK DW + +V T+ + + Sbjct: 7 IAFEGIDGSGKSSQATLLK----DW------IELKRDVYLTEWNSSDW---------IHD 47 Query: 84 MMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYE 143 ++ E ++ T T++ + + + + P+L V SDRYI+ + + Sbjct: 48 IIKEAKKKDLLTPLTFSLI-----HATDFSDRYERYILPMLKSGFIVISDRYIYTAYARD 102 Query: 144 SECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLH 187 S + +W + + + +++ D Y++ +P+ L Sbjct: 103 SVRGVDIDW--VKKLYSF-------AIKPDITFYIRVSPDIALE 137 >5LC5-O nrPDB Length = 314 Score = 33.3 bits (74), Expect = 0.10, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 6/125 (4%) Query: 93 SFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEW 152 S+ Q + SR+ +L L + + ERS+YSD ++F +Y + + Sbjct: 89 SYRLQAWLYASRLLQYADALEHLLSTGQG--VVLERSIYSD-FVFLEAMYRQGFIRKQCV 145 Query: 153 TIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKH 212 Y + L ++Y+ RI +G E I YL+ + + Sbjct: 146 DHYNQVKKV---TICEYLPPHVVVYVDVPVPEVQSRIQKKGNPHEMKITSAYLQDIENAY 202 Query: 213 ESWLL 217 + L Sbjct: 203 KGTFL 207 >3A4L-A nrPDB Length = 260 Score = 33.3 bits (74), Expect = 0.11, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 16/111 (14%) Query: 147 MNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLE 206 +++T + Y + N + + IIYL+A+ + + R RG IP E ++ Sbjct: 77 VDDTNY--YNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGEK----IPNEVIK 130 Query: 207 KLHYKHESWLLHRTLKTNFDYLQEVPILTLDV--NEDFKDKYESLVEKVKE 255 K++ K + Y + P L +D + DF + + L+EK KE Sbjct: 131 KMYEKFDE--------PGKKYKWDEPFLIIDTTKDIDFNEIAKKLIEKSKE 173 >2IF2-A nrPDB Length = 204 Score = 32.9 bits (73), Expect = 0.14, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 59/177 (33%), Gaps = 28/177 (15%) Query: 21 IKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGN 80 +K+I + GNI GKST + ++L D + + + G Sbjct: 1 MKRIGLTGNIGCGKSTVAQMFRELG----------------AYVLDADKLIHSFYRKGHP 44 Query: 81 VLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASN 140 V + + + + + ++ + KL+ E+ R++Y + N Sbjct: 45 VYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKLRKLEE---ITHRALYKEIEKITKN 101 Query: 141 LYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEE 197 L E + + G D +I + A E C R RG +EE Sbjct: 102 LSE---------DTLFILEASLLVEKGTYKNYDKLIVVYAPYEVCKERAIKRGMSEE 149 >6N9A-E nrPDB Length = 162 Score = 31.8 bits (70), Expect = 0.31, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 24 ISIEGNIAAGKSTFVN-ILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVL 82 + + GN+ AGK+TFV +++ + D ++V P NV L + + + L Sbjct: 32 VILSGNLGAGKTTFVKGMIRAIGLDEKMVKSPTFTLMNVYPGLKTIYHLDLYRLQDTDFL 91 Query: 83 QMMYEK 88 + E Sbjct: 92 SLDVED 97 >2KI5-A nrPDB Length = 366 Score = 31.8 bits (70), Expect = 0.34, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 4/68 (5%) Query: 2 ATPPKRSCPSFSASSEGTRIK--KISIEGNIAAGKSTFVNILKQLC--EDWEVVPEPVAR 57 A P+R + E ++ I+G GK+T +L L +D VPEP+ Sbjct: 18 ALRPRRQQEATEVRPEQKMPTLLRVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTY 77 Query: 58 WCNVQSTQ 65 W + +++ Sbjct: 78 WRVLGASE 85 >1S49-A nrPDB Length = 609 Score = 31.4 bits (69), Expect = 0.41, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Query: 33 GKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVLQMMYEK 88 GK+ NI ++ ++W+ EPVA + ++ + + + G + + Y+K Sbjct: 248 GKTPLFNIFDKVRKEWDSFNEPVAVSFDTKAWDTQVTSKDL--QLIGEIQKYYYKK 301 >4LV5-B nrPDB Length = 423 Score = 31.4 bits (69), Expect = 0.42, Method: Composition-based stats. Identities = 45/253 (17%), Positives = 88/253 (34%), Gaps = 28/253 (11%) Query: 19 TRIKKISIEGNIAAGKSTFVNILKQLCEDWE------VVPEPVARWCNVQSTQDEFEELT 72 + + +++ G +GKS+F+N L+ + + E VV + R Sbjct: 77 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWD 136 Query: 73 MSQKNGGNVLQMMY-EKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVY 131 + N Y EK + + + F +R + + + +K F V Sbjct: 137 LPGIGSTNFPPNTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVD 196 Query: 132 SDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHR--- 188 SD +N + + + + QD N F ++ + I+L + C + Sbjct: 197 SD----ITNEADGKPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPV 252 Query: 189 ----------IYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNF--DYLQEVPILTL 236 IY R N +P + + K +L R F D + +P LT Sbjct: 253 LMDKLISDLPIYKR-HNFMVSLP-NITDSVIEKKRQFLKQRIWLEGFAADLVNIIPSLTF 310 Query: 237 DVNEDFKDKYESL 249 ++ D + +S+ Sbjct: 311 LLDSDLETLKKSM 323 >2CJQ-A nrPDB Length = 720 Score = 31.4 bits (69), Expect = 0.45, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Query: 33 GKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVLQMMYEK 88 GK+ NI ++ ++W++ EPVA + ++ + + + G + + Y K Sbjct: 318 GKTPLFNIFNKVRKEWDLFNEPVAVSFDTKNWDTQVTSRDL--RLIGEIQKYYYRK 371 >4MRS-A nrPDB Length = 614 Score = 31.0 bits (68), Expect = 0.58, Method: Composition-based stats. Identities = 10/27 (37%), Positives = 16/27 (59%) Query: 23 KISIEGNIAAGKSTFVNILKQLCEDWE 49 +++I G AGKST +L + + WE Sbjct: 389 RVAIVGPSGAGKSTIARLLFRFYDPWE 415 >4CVN-A nrPDB Length = 191 Score = 30.2 bits (66), Expect = 0.86, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 16/91 (17%) Query: 170 LELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQ 229 + +D ++ L+A P R+ RG ++E K+ E+ L+ L D + Sbjct: 89 MPVDLVVVLRAHPRIIGERLRERGYSKE---------KIGENVEAELVDAILIEAIDEHE 139 Query: 230 EVPILTLDVNEDFKDKY-ESLVEKVKEFLST 259 V + D +K E +VE++ + + Sbjct: 140 NV------IEVDTTNKTPEEIVEEIIGLIKS 164 >3B5X-A nrPDB Length = 582 Score = 30.2 bits (66), Expect = 0.89, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 4/42 (9%) Query: 5 PKRSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCE 46 P S SFS + K +++ G +GKST N+ + + Sbjct: 357 PALSHVSFSIP----QGKTVALVGRSGSGKSTIANLFTRFYD 394 >4LQ3-A nrPDB Length = 526 Score = 29.8 bits (65), Expect = 1.2, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 15/93 (16%) Query: 49 EVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQ 108 +V+ + + + + + L ++K NVL+ + PE+WSFT Q A L + + Sbjct: 62 QVMRDQLKPFTEPRGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFT-QACASLDKTTSS 120 Query: 109 LAS-------------LNGKLK-DAEKPVLFFE 127 GKL A K L FE Sbjct: 121 GHPHHMRKNDCWNGESFTGKLADQASKANLMFE 153 >6HZK-A nrPDB Length = 333 Score = 29.8 bits (65), Expect = 1.2, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 1/75 (1%) Query: 16 SEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQ 75 S+ R+ I + G+ GKSTF+N L L + + + ++ + +T Sbjct: 2 SKPDRVVLIGVAGDSGCGKSTFLNRLADLFGTELMTVICLDDYHSLDRKGRKEAGVTALD 61 Query: 76 KNGGNVLQMMYEKPE 90 N +MYE+ + Sbjct: 62 PRANN-FDLMYEQVK 75 >4F7W-A nrPDB Length = 334 Score = 29.8 bits (65), Expect = 1.3, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 16/28 (57%) Query: 21 IKKISIEGNIAAGKSTFVNILKQLCEDW 48 ISI G++A GKST +L+ L W Sbjct: 106 PYIISIAGSVAVGKSTTARVLQALLSRW 133 >1ESM-A nrPDB Length = 316 Score = 29.8 bits (65), Expect = 1.3, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 16/28 (57%) Query: 21 IKKISIEGNIAAGKSTFVNILKQLCEDW 48 ISI G++A GKST +L+ L W Sbjct: 88 PYIISIAGSVAVGKSTTARVLQALLSRW 115 >5NRN-A nrPDB Length = 214 Score = 29.5 bits (64), Expect = 1.5, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 54/173 (31%), Gaps = 18/173 (10%) Query: 24 ISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVLQ 83 I+IEG AGK T V +L + VA + Q ++ +G Sbjct: 3 IAIEGVDGAGKRTLVE---KLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGE---- 55 Query: 84 MMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYE 143 + + T L R A + V+ +R V S+ A+ L+E Sbjct: 56 --HGDLASSVYAMATLFALDRA---GAVHTIQGLCRGYDVVILDRYVASNAAYSAARLHE 110 Query: 144 SECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNE 196 + W ++ + D + L + E R R + + Sbjct: 111 NAAGKAAAWVQRIEFARLGLP------KPDWQVLLAVSAELAGERSRGRAQRD 157 >2VG9-A nrPDB Length = 217 Score = 29.5 bits (64), Expect = 1.7, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 18/37 (48%) Query: 141 LYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIY 177 + E+ I +DW DW+ + G+ + +DG Y Sbjct: 101 NRGLNGVPLVEYYIIEDWVDWVPDAQGKMVTIDGAQY 137 >5AJ3-G nrPDB Length = 242 Score = 29.1 bits (63), Expect = 2.3, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 50/149 (33%), Gaps = 19/149 (12%) Query: 1 MATPPKRSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCN 60 MA P ++ +S S+ G RI + G S + K D E +P+A Sbjct: 1 MAAPAVKAARGWSCSALGVRIAVLRFPGLTQVRWSRYGPEYKDPQIDKEYYRKPLAEQTE 60 Query: 61 VQSTQDEFEELTMSQKNGGNVLQMMYEKPERWSFT----------------FQTYACLSR 104 + + +F++ + + ++E P FT QT + R Sbjct: 61 EEKYERDFKKTQLIKAAPATKTSSVFEDPVISKFTNMMMKGGNKVLARSLMTQTLEAVKR 120 Query: 105 ---IRAQLASLNGKLKDAEKPVLFFERSV 130 + AS + P F +++ Sbjct: 121 KQFAKYHAASAEEQATIERNPYTIFHQAL 149 >5J5T-A nrPDB Length = 370 Score = 28.7 bits (62), Expect = 2.6, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 36/121 (29%), Gaps = 10/121 (8%) Query: 41 LKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVLQMMYEKPERWSFTFQTYA 100 QLC+ W V + D + N + +WS +F + Sbjct: 181 YNQLCDLWAVGITAIELAELQPPMFDLHPMRALFLMTKSNFQPPKLKDKMKWSNSFHHFV 240 Query: 101 CLSRIR-AQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWH 159 ++ + + KL RS+ + + +N + + Y D+ Sbjct: 241 KMALTKNPKKRPTAEKLLQHPFVTQHLTRSL---------AIELLDKVNNPDHSTYHDFD 291 Query: 160 D 160 D Sbjct: 292 D 292 >3WMF-A nrPDB Length = 621 Score = 27.9 bits (60), Expect = 4.4, Method: Composition-based stats. Identities = 9/25 (36%), Positives = 15/25 (60%) Query: 22 KKISIEGNIAAGKSTFVNILKQLCE 46 K ++I G AGKST + +L + + Sbjct: 380 KTVAIVGGSGAGKSTIIQLLMRFYD 404 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.303 0.117 0.302 Lambda K H 0.267 0.0361 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,016,905 Number of Sequences: 36641 Number of extensions: 330453 Number of successful extensions: 1279 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 22 Number of HSP's that attempted gapping in prelim test: 1217 Number of HSP's gapped (non-prelim): 62 length of query: 260 length of database: 10,336,785 effective HSP length: 95 effective length of query: 165 effective length of database: 6,855,890 effective search space: 1131221850 effective search space used: 1131221850 T: 11 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 58 (27.1 bits)