BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= P27695
(318 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
1BIX-A nrPDB 596 e-171
2O3C-A nrPDB 426 e-120
5CFE-A nrPDB 275 3e-74
5J8N-A nrPDB 207 5e-54
3FZI-A nrPDB 201 3e-52
4B5M-A nrPDB 180 8e-46
5EWT-A nrPDB 172 1e-43
2J63-A nrPDB 137 4e-33
6FK4-A nrPDB 115 2e-26
2VOA-A nrPDB 113 1e-25
2MYI-A nrPDB 111 4e-25
4F1R-A nrPDB 110 1e-24
6O1K-A nrPDB 109 1e-24
1AKO-A nrPDB 100 1e-21
4ILS-A nrPDB 29 2.7
6EN1-A nrPDB 28 7.4
>1BIX-A nrPDB
Length = 287
Score = 596 bits (1537), Expect = e-171, Method: Compositional matrix adjust.
Identities = 287/287 (100%), Positives = 287/287 (100%)
Query: 32 KNDKEAAGEGPALYEDPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDI 91
KNDKEAAGEGPALYEDPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDI
Sbjct: 1 KNDKEAAGEGPALYEDPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDI 60
Query: 92 LCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEH 151
LCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEH
Sbjct: 61 LCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEH 120
Query: 152 DQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDL 211
DQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDL
Sbjct: 121 DQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDL 180
Query: 212 NVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMM 271
NVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMM
Sbjct: 181 NVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMM 240
Query: 272 NARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL 318
NARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL
Sbjct: 241 NARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL 287
>2O3C-A nrPDB
Length = 282
Score = 426 bits (1095), Expect = e-120, Method: Compositional matrix adjust.
Identities = 196/279 (70%), Positives = 231/279 (82%), Gaps = 1/279 (0%)
Query: 40 EGPALYEDPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKC 99
E P LYEDPP++ TS G+ A +KI SWNVDGLRAW+KK GLDWV++E PDILCLQETKC
Sbjct: 5 EAPILYEDPPEKLTSKDGRAANMKITSWNVDGLRAWVKKNGLDWVRKEDPDILCLQETKC 64
Query: 100 SENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIV 159
+E LPA++ +P H+YW+ DKEGYSGV +L + PL V+YGIG EEHD+EGRVI
Sbjct: 65 AEKALPADITAMPEYPHKYWAGSEDKEGYSGVAMLCKTEPLNVTYGIGKEEHDKEGRVIT 124
Query: 160 AEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEID 219
AEF F LVTAYVPNA RGLVRL+YR+ WD FR +L GL +RKPLVLCGDLNVAH+EID
Sbjct: 125 AEFPDFFLVTAYVPNASRGLVRLDYRKTWDVDFRAYLCGLDARKPLVLCGDLNVAHQEID 184
Query: 220 LRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVG 279
L+NPKGN+KNAGFTP+ER+GF +LL+A DSFR LYP+ YAYTFWTYMMNARSKNVG
Sbjct: 185 LKNPKGNRKNAGFTPEEREGFTQLLEA-GFTDSFRELYPDQAYAYTFWTYMMNARSKNVG 243
Query: 280 WRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL 318
WRLDYF+LS +LLP LCDSKIR+ A+GSDHCPITL+LA+
Sbjct: 244 WRLDYFVLSSALLPGLCDSKIRNTAMGSDHCPITLFLAV 282
>5CFE-A nrPDB
Length = 252
Score = 275 bits (702), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 129/258 (50%), Positives = 183/258 (70%), Gaps = 7/258 (2%)
Query: 62 LKICSWNVDGLRAWIKKKG-LDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWS 120
+K+ SWNV+GLRA ++K L ++KEE DI+CLQETK + ++ +LQ P H YW+
Sbjct: 1 MKLISWNVNGLRAVMRKMDFLSYLKEEDADIICLQETKIQDGQV--DLQ--PEDYHVYWN 56
Query: 121 APSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLV 180
K+GYSG + S+Q PL+V YGIG EEHDQEGRVI EF++ ++T Y PN+ RGL
Sbjct: 57 YAV-KKGYSGTAVFSKQEPLQVIYGIGVEEHDQEGRVITLEFENVFVMTVYTPNSRRGLE 115
Query: 181 RLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF 240
R++YR +W+EA ++ L +KP++LCGDLNVAH+EIDL+NPK N+ NAGF+ QER+ F
Sbjct: 116 RIDYRMQWEEALLSYILELDQKKPVILCGDLNVAHQEIDLKNPKANRNNAGFSDQEREAF 175
Query: 241 GELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI 300
L+A DSFRH+YP+ AY++W+Y AR +N+GWR+DYF++S SL + D+ I
Sbjct: 176 TRFLEA-GFVDSFRHVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSESLKEQIEDASI 234
Query: 301 RSKALGSDHCPITLYLAL 318
+ +GSDHCP+ L + +
Sbjct: 235 SADVMGSDHCPVELIINI 252
>5J8N-A nrPDB
Length = 258
Score = 207 bits (527), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 111/256 (43%), Positives = 158/256 (61%), Gaps = 5/256 (1%)
Query: 64 ICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPS 123
+ SWNV+GLRA +KK LD + E DI+C+QETK S++KLP E++ + G + + SA
Sbjct: 6 LISWNVNGLRAAVKKGFLDLLLEHRFDIVCVQETKVSQDKLPREVKNIQGYYNYFVSA-- 63
Query: 124 DKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLE 183
++ GYSGVG S+ P+K+ G+G E D+EGR + +++ FVL+ Y PN RL
Sbjct: 64 EQNGYSGVGTFSKNKPIKLEKGMGIEVFDREGRFLRTDYEDFVLLNIYFPNGKMSQERLG 123
Query: 184 YRQRWDEAFRKFLKGLASR-KPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGE 242
Y+ + +AF + L S K LV+CGD+N AH+EIDL PK N+ +GF P+ER +
Sbjct: 124 YKMAFYDAFLDYANALKSEGKKLVICGDVNTAHKEIDLARPKQNEMISGFLPEERAWMDK 183
Query: 243 LLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRS 302
L A L DSFR P Y++W+Y ARS+NVGWRLDY +S +L + + I
Sbjct: 184 FLAAGYL-DSFRMFNPEGG-NYSWWSYRTGARSRNVGWRLDYVFVSENLRENVKSASIYP 241
Query: 303 KALGSDHCPITLYLAL 318
+ +GSDHCP+ L L
Sbjct: 242 EIMGSDHCPVGLELEF 257
>3FZI-A nrPDB
Length = 265
Score = 201 bits (512), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 105/254 (41%), Positives = 153/254 (60%), Gaps = 5/254 (1%)
Query: 60 ATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYW 119
A LKI SWNV+GLRA +K L W EE PDILCLQE K + +LP +L+ + G ++ +
Sbjct: 2 AVLKIISWNVNGLRAVHRKGFLKWFMEEKPDILCLQEIKAAPEQLPRKLRHVEG--YRSF 59
Query: 120 SAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGL 179
P++++GYSGV + ++ P + G G E D EGR+ +A+FD F+L Y PN
Sbjct: 60 FTPAERKGYSGVAMYTKVPPSSLREGFGVERFDTEGRIQIADFDDFLLYNIYFPNGKMSE 119
Query: 180 VRLEYRQRWDEAFRKFL-KGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQ 238
RL+Y+ + +AF + + + S + +++CGD N AH EIDL PK N +GF P ER
Sbjct: 120 ERLKYKLEFYDAFLEDVNRERDSGRNVIICGDFNTAHREIDLARPKENSNVSGFLPVERA 179
Query: 239 GFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDS 298
+ ++ D+FR ++ + P YT+W+Y AR +NVGWRLDYF ++ + S
Sbjct: 180 WIDKFIEN-GYVDTFR-MFNSDPGQYTWWSYRTRARERNVGWRLDYFFVNEEFKGKVKRS 237
Query: 299 KIRSKALGSDHCPI 312
I S +GSDHCPI
Sbjct: 238 WILSDVMGSDHCPI 251
>4B5M-A nrPDB
Length = 259
Score = 180 bits (456), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 153/255 (60%), Gaps = 4/255 (1%)
Query: 61 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWS 120
LKI S NV+G+R+ KK +++ DI+C+QE K E L A+++ G+ H +W
Sbjct: 1 MLKIISANVNGIRSAYKKGFYEYIAASGADIVCVQELKAQEADLSADMKNPHGM-HGHWH 59
Query: 121 APSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLV 180
++K GYSGV + S++ P V G+G EE D+EGR + +F +++ Y+P+
Sbjct: 60 C-AEKRGYSGVAVYSKRKPDNVQIGMGIEEFDREGRFVRCDFGRLSVISLYLPSGSSAEE 118
Query: 181 RLEYRQRWDEAFRKFLKGLASR-KPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQG 239
R + + R+ +AF L+ + + + +V+CGD N+AH+ IDL+N KGN+KN+GF P+ER+
Sbjct: 119 RQQVKYRFLDAFYPMLEAMKNEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEEREW 178
Query: 240 FGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSK 299
G+++ + D +R LYP+ P YT+W+ A +K+VGWR+DY +++ L +
Sbjct: 179 IGKVIHKLGWTDMWRTLYPDVP-GYTWWSNRGQAYAKDVGWRIDYQMVTPELAAKAVSAH 237
Query: 300 IRSKALGSDHCPITL 314
+ SDH P+ +
Sbjct: 238 VYKDEKFSDHAPLVV 252
>5EWT-A nrPDB
Length = 247
Score = 172 bits (437), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/256 (36%), Positives = 144/256 (56%), Gaps = 9/256 (3%)
Query: 62 LKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSA 121
+KI SWNV+G+RA +KK +D+++ +++ QETK L + + ++ S
Sbjct: 1 MKIVSWNVNGIRAALKKNLIDFIENNMFEVIMFQETKGDIVPL-----DFIMMGYEVISF 55
Query: 122 PSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVR 181
P+ ++GYSGV L++ P+ V G+ +E D EGR + E F ++ A P AG L R
Sbjct: 56 PAKRKGYSGVMTLTKIKPINVIKGLQIKEFDDEGRTVTLELKDFYVINAAFPRAGDNLER 115
Query: 182 LEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFG 241
L+++ +++ F+ L KP++LCGD N+AH+ ID + G TPQER F
Sbjct: 116 LDFKLKFNNEIENFVLKLRRAKPVILCGDFNIAHQNID--GAFSDPTIPGLTPQERSWFS 173
Query: 242 ELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIR 301
L ++ D+FR+L+PN Y++W+YM AR KN+G RLDY ++S L + + I
Sbjct: 174 HFL-SLGFIDTFRYLHPNVR-KYSWWSYMGKAREKNLGLRLDYCIVSEELKDRIKMADIL 231
Query: 302 SKALGSDHCPITLYLA 317
GSDH PI L L
Sbjct: 232 IDIQGSDHAPIILELT 247
>2J63-A nrPDB
Length = 467
Score = 137 bits (346), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 119/379 (31%), Positives = 164/379 (43%), Gaps = 72/379 (18%)
Query: 3 KRGKKGAVAEDGD--ELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPA 60
+R A +GD EL EA + A KK++KE + D PS
Sbjct: 93 RRTSSAAKITNGDAGELIRTAEALAALNA-KKSEKEIWSDVVPFVRRTTDSDFDPS---R 148
Query: 61 TLKICSWNVDGLRAWIKKKG---LDWVKEEAPDILCLQETKCS--ENKLPAELQELPGLS 115
K +WNV GLR +KK +++ E PD+LCLQETK + E A L + G S
Sbjct: 149 MYKFITWNVAGLRGLLKKNASALRAFMEAEKPDVLCLQETKLNVDEADANATLGVVDGYS 208
Query: 116 HQYWSAP-SDKEGYSG----------VGLLSRQCPLKV-------------SYGIGDEEH 151
+ P + K GYSG V L +C S + +
Sbjct: 209 --FVDHPCAFKRGYSGTRTYMKNSTTVKGLHARCTRGFALPSEPQADAAAGSRVLVEGAG 266
Query: 152 DQEGRVIVAEFDS----------FVLVTAYVPNAGRGLVRLEYR-QRWDEAFRKFLKGL- 199
D+EGRV+ LV YV N+G GL RL YR Q +D + R++L L
Sbjct: 267 DEEGRVLTTFLSPDPDSASSSSRIALVNTYVANSGMGLTRLPYRVQSFDPSMREYLHRLD 326
Query: 200 ------------------ASRKPLVLCGDLNVAHEEIDLRNPKGNKKN----AGFTPQER 237
+S + GDLNVA + D R G K+ +GF P+ER
Sbjct: 327 TWATENAAVPSAAAMGSGSSPHGFIWAGDLNVAERDYD-RYYAGTFKSMQECSGFAPEER 385
Query: 238 QGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCD 297
F E +Q D FR LYP Y+FW+ +N R +N+GWRLDYF++S L + D
Sbjct: 386 MSFRETMQRTNSVDIFRQLYPQAGPVYSFWSQRINGRPRNLGWRLDYFVVSSRLASYVVD 445
Query: 298 SKIRSKALGSDHCPITLYL 316
+GSDHCP +++
Sbjct: 446 CFPMPTVMGSDHCPFQMWM 464
>6FK4-A nrPDB
Length = 258
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 136/259 (52%), Gaps = 15/259 (5%)
Query: 62 LKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSA 121
+KI +WNV+ L + + + + + PDIL LQE K ++K PA ++ G H WS
Sbjct: 3 MKITTWNVNSLNVRLPQVQ-NLLADNPPDILVLQELKLDQDKFPAAALQMMGW-HCVWSG 60
Query: 122 PSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGL-- 179
++ Y+GV ++SR P V +G+ D + RVI A ++ Y N G L
Sbjct: 61 ---QKTYNGVAIVSRSVPQDVHFGLPALPDDPQRRVIAATVSGVRVINVYCVN-GEALDS 116
Query: 180 VRLEYRQRWDEAFRKFLKGLASRK-PLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQ 238
+ +Y+++W A +F++ +R LVL GD N+A + D +P+ + + ERQ
Sbjct: 117 PKFKYKEQWFAALTEFVRDEMTRHGKLVLLGDFNIAPADADCYDPEKWHEKIHCSSVERQ 176
Query: 239 GFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDS 298
F LL + L DS R ++P + YT++ Y + +G R+D+ L+S ++ AL D
Sbjct: 177 WFQNLLD-LGLTDSLRQVHPEGAF-YTWFDYRGAMFQRKLGLRIDHILVSPAMAAALKDV 234
Query: 299 KI--RSKALG--SDHCPIT 313
++ ++AL SDH P+T
Sbjct: 235 RVDLETRALERPSDHAPVT 253
>2VOA-A nrPDB
Length = 257
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/261 (31%), Positives = 130/261 (49%), Gaps = 17/261 (6%)
Query: 61 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLP-AELQELPGLSHQYW 119
LKI ++NV+ +R+ + + W+KE PDILC+QETK K P A+ + Y
Sbjct: 1 MLKIATFNVNSIRSRLHIV-IPWLKENKPDILCMQETKVENRKFPEADFHRI-----GYH 54
Query: 120 SAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGR-G 178
S +G +GV + S + P VS+G+ E D E R+I A+ ++ YVP +
Sbjct: 55 VVFSGSKGRNGVAIASLEEPEDVSFGLDSEPKD-EDRLIRAKIAGIDVINTYVPQGFKID 113
Query: 179 LVRLEYRQRWDEAFRKFL-KGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQER 237
+ +Y+ +W E +L K + R V CGD+NVA E ID+ +P K + F R
Sbjct: 114 SEKYQYKLQWLERLYHYLQKTVDFRSFAVWCGDMNVAPEPIDVHSPDKLKNHVCFHEDAR 173
Query: 238 QGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMN-ARSKNVGWRLDYFL----LSHSLL 292
+ + ++L+ + D R ++PN YTF+ Y + A + +GWR D L L+ +
Sbjct: 174 RAYKKILE-LGFVDVLRKIHPNE-RIYTFYDYRVKGAIERGLGWRGDAILATPPLAERCV 231
Query: 293 PALCDSKIRSKALGSDHCPIT 313
D K R SDH P+
Sbjct: 232 DCYADIKPRLAEKPSDHLPLV 252
>2MYI-A nrPDB
Length = 259
Score = 111 bits (278), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 131/254 (51%), Gaps = 4/254 (1%)
Query: 62 LKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSA 121
++I S NV+G++ +++ L W++ + D++CLQ+T+ S +L +L G + ++
Sbjct: 1 MRIISVNVNGIQTAVERGLLSWLQAQNADVICLQDTRASAFELDDPAYQLDG--YFLYAC 58
Query: 122 PSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVR 181
++ GV L SR P V G+G E D+ GR + A+FD + T +P+ G
Sbjct: 59 EAEVPAQGGVALYSRLQPKAVITGLGFETADRYGRYLQADFDKVSIATLLLPSGQNGDED 118
Query: 182 LEYRQRWDEAFRKFL-KGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF 240
L + + + F ++L K R+ + CG L VA +++D++N + ++++ GF ER
Sbjct: 119 LNQKFKLMDDFARYLDKQRRKRREYIYCGSLYVAQQKLDIKNWRDSQQSPGFLAPERAWM 178
Query: 241 GELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI 300
E++ + D+ R + Y++W A N+GWR DY LL+ L + +++
Sbjct: 179 DEIVGNMGYVDALREVSREGD-QYSWWPDNEQAEMLNLGWRFDYQLLTPGLRRFVRSARL 237
Query: 301 RSKALGSDHCPITL 314
+ S H P+ +
Sbjct: 238 PRQPRFSQHAPLIV 251
>4F1R-A nrPDB
Length = 293
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 136/276 (49%), Gaps = 5/276 (1%)
Query: 41 GPALYEDPPDQKTSPSGKP-ATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKC 99
G LY + + G+ ++I S NV+G++A ++ L W++ + D++CLQ+T+
Sbjct: 13 GENLYFEGSHMASMTGGQQMGRMRIISVNVNGIQAAAERGLLSWLQAQNADVICLQDTRA 72
Query: 100 SENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIV 159
S L +L G A ++G GV L SR P V G+G E D+ GR +
Sbjct: 73 SAFDLDDPSFQLDGYFLYACDAELPEQG--GVALYSRLQPKAVISGLGFETADRYGRYLQ 130
Query: 160 AEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFL-KGLASRKPLVLCGDLNVAHEEI 218
A+FD + T +P+ G L + ++ + F +L K R+ + CG L VAH+++
Sbjct: 131 ADFDKVSIATLLLPSGQSGDESLNQKFKFMDDFTHYLSKQRRKRREYIYCGSLYVAHQKM 190
Query: 219 DLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNV 278
D++N + ++ GF ER E+ + AD+ R + +++W A N+
Sbjct: 191 DVKNWRECQQMPGFLAPERAWLDEVFGNLGYADALREVSREGD-QFSWWPDSEQAEMLNL 249
Query: 279 GWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITL 314
GWR DY +L+ L + ++K+ + S H P+ +
Sbjct: 250 GWRFDYQVLTPGLRRFVRNAKLPRQPRFSQHAPLIV 285
>6O1K-A nrPDB
Length = 262
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 129/255 (50%), Gaps = 4/255 (1%)
Query: 61 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWS 120
++I S NV+G++A ++ L W++ + D++CLQ+T+ S L +L G
Sbjct: 3 AMRIISVNVNGIQAAAERGLLSWLQAQNADVICLQDTRASAFDLDDPSFQLDGYFLYACD 62
Query: 121 APSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLV 180
A ++G GV L SR P V G+G E D+ GR + A+FD + T +P+ G
Sbjct: 63 AELPEQG--GVALYSRLQPKAVISGLGFETADRYGRYLQADFDKVSIATLLLPSGQSGDE 120
Query: 181 RLEYRQRWDEAFRKFL-KGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQG 239
L + ++ + F +L K R+ + CG L VAH+++D++N + ++ GF ER
Sbjct: 121 SLNQKFKFMDDFTHYLSKQRRKRREYIYCGSLYVAHQKMDVKNWRECQQMPGFLAPERAW 180
Query: 240 FGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSK 299
E+ + AD+ R + +++W A N+GWR DY +L+ L + ++K
Sbjct: 181 LDEVFGNLGYADALREVSREGD-QFSWWPDSEQAEMLNLGWRFDYQVLTPGLRRFVRNAK 239
Query: 300 IRSKALGSDHCPITL 314
+ + S H P+ +
Sbjct: 240 LPRQPRFSQHAPLIV 254
>1AKO-A nrPDB
Length = 268
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 138/269 (51%), Gaps = 25/269 (9%)
Query: 62 LKICSWNVDGLRAWIKKKGLDWVKEE-APDILCLQETKCSENKLPAELQELPGLSHQYWS 120
+K S+N++GLRA + L+ + E+ PD++ LQETK ++ P L+E+ L + +
Sbjct: 1 MKFVSFNINGLRA--RPHQLEAIVEKHQPDVIGLQETKVHDDMFP--LEEVAKLGYNVFY 56
Query: 121 APSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFV----LVTAYVPN-- 174
++G+ GV LL+++ P+ V G ++ + + R+I+AE S + ++ Y P
Sbjct: 57 --HGQKGHYGVALLTKETPIAVRRGFPGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGE 114
Query: 175 AGRGLVRLEYRQRWDEAFRKFLKGLASR-KPLVLCGDLNVAHEEIDLRNPKGNKKN---- 229
+ ++ + ++ + + +L+ R P+++ GD+N++ ++D+ + N+K
Sbjct: 115 SRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRT 174
Query: 230 --AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLL 287
F P+ER+ L+ + L D+FRH P T ++++ Y N G R+D L
Sbjct: 175 GKCSFLPEEREWMDRLM-SWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLA 233
Query: 288 SHSL----LPALCDSKIRSKALGSDHCPI 312
S L + D +IRS SDH P+
Sbjct: 234 SQPLAECCVETGIDYEIRSMEKPSDHAPV 262
>4ILS-A nrPDB
Length = 390
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 28/68 (41%)
Query: 143 SYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASR 202
S G+ DEE + ++ FVL + A V +Y F L+ L SR
Sbjct: 136 SLGVKDEEETKRIVALIERHPHFVLEGLWTWFATADEVNTDYFSYQYTRFLHMLEWLPSR 195
Query: 203 KPLVLCGD 210
PLV C +
Sbjct: 196 PPLVFCAN 203
>6EN1-A nrPDB
Length = 317
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 130 GVGL-LSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSF--VLVTAYV--PNAGRGLVRLEY 184
G GL +S C G+ D++ D E RVI+ V Y+ P G+ ++
Sbjct: 141 GTGLKISELC------GLTDKDLDFENRVIIVSHQLLRNTGVGYYIDEPKTQSGVRKIPM 194
Query: 185 RQRWDEAFRKFLKGLASRKPLVLCGDLN 212
+ +AF++ +K KP ++ G N
Sbjct: 195 NEEVYQAFQRVIKNRKGAKPFIIDGYAN 222
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
1BIX-A nrPDB 429 e-120
2O3C-A nrPDB 404 e-113
4F1R-A nrPDB 355 1e-98
5CFE-A nrPDB 348 3e-96
5J8N-A nrPDB 344 3e-95
3FZI-A nrPDB 337 3e-93
4B5M-A nrPDB 335 2e-92
6O1K-A nrPDB 332 1e-91
2J63-A nrPDB 322 9e-89
5EWT-A nrPDB 321 2e-88
2MYI-A nrPDB 321 3e-88
6FK4-A nrPDB 280 8e-76
2VOA-A nrPDB 271 4e-73
1AKO-A nrPDB 264 3e-71
Sequences not found previously or not previously below threshold:
5A7J-A nrPDB 33 0.15
3Q6B-A nrPDB 33 0.19
3N1X-A nrPDB 32 0.47
1DNP-A nrPDB 32 0.49
2CSX-A nrPDB 31 0.68
2MQN-A nrPDB 31 0.68
6FTI-5 nrPDB 30 1.0
3QGU-A nrPDB 30 1.3
3TKA-A nrPDB 30 1.4
5TKY-A nrPDB 30 1.5
4NK4-A nrPDB 30 1.6
4F0W-A nrPDB 30 1.6
4C1R-A nrPDB 30 1.7
1T5O-A nrPDB 30 1.8
3Q9S-A nrPDB 30 1.9
3Q9V-A nrPDB 30 1.9
2YY8-A nrPDB 29 2.8
5EQD-A nrPDB 28 4.1
4UBW-A nrPDB 28 7.0
3UK2-A nrPDB 27 8.9
CONVERGED!
>1BIX-A nrPDB
Length = 287
Score = 429 bits (1102), Expect = e-120, Method: Composition-based stats.
Identities = 287/287 (100%), Positives = 287/287 (100%)
Query: 32 KNDKEAAGEGPALYEDPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDI 91
KNDKEAAGEGPALYEDPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDI
Sbjct: 1 KNDKEAAGEGPALYEDPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDI 60
Query: 92 LCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEH 151
LCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEH
Sbjct: 61 LCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEH 120
Query: 152 DQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDL 211
DQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDL
Sbjct: 121 DQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDL 180
Query: 212 NVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMM 271
NVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMM
Sbjct: 181 NVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMM 240
Query: 272 NARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL 318
NARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL
Sbjct: 241 NARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL 287
>2O3C-A nrPDB
Length = 282
Score = 404 bits (1038), Expect = e-113, Method: Composition-based stats.
Identities = 196/279 (70%), Positives = 231/279 (82%), Gaps = 1/279 (0%)
Query: 40 EGPALYEDPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKC 99
E P LYEDPP++ TS G+ A +KI SWNVDGLRAW+KK GLDWV++E PDILCLQETKC
Sbjct: 5 EAPILYEDPPEKLTSKDGRAANMKITSWNVDGLRAWVKKNGLDWVRKEDPDILCLQETKC 64
Query: 100 SENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIV 159
+E LPA++ +P H+YW+ DKEGYSGV +L + PL V+YGIG EEHD+EGRVI
Sbjct: 65 AEKALPADITAMPEYPHKYWAGSEDKEGYSGVAMLCKTEPLNVTYGIGKEEHDKEGRVIT 124
Query: 160 AEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEID 219
AEF F LVTAYVPNA RGLVRL+YR+ WD FR +L GL +RKPLVLCGDLNVAH+EID
Sbjct: 125 AEFPDFFLVTAYVPNASRGLVRLDYRKTWDVDFRAYLCGLDARKPLVLCGDLNVAHQEID 184
Query: 220 LRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVG 279
L+NPKGN+KNAGFTP+ER+GF +LL+A DSFR LYP+ YAYTFWTYMMNARSKNVG
Sbjct: 185 LKNPKGNRKNAGFTPEEREGFTQLLEA-GFTDSFRELYPDQAYAYTFWTYMMNARSKNVG 243
Query: 280 WRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL 318
WRLDYF+LS +LLP LCDSKIR+ A+GSDHCPITL+LA+
Sbjct: 244 WRLDYFVLSSALLPGLCDSKIRNTAMGSDHCPITLFLAV 282
>4F1R-A nrPDB
Length = 293
Score = 355 bits (911), Expect = 1e-98, Method: Composition-based stats.
Identities = 77/276 (27%), Positives = 136/276 (49%), Gaps = 5/276 (1%)
Query: 41 GPALYEDPPDQKTSPSGKP-ATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKC 99
G LY + + G+ ++I S NV+G++A ++ L W++ + D++CLQ+T+
Sbjct: 13 GENLYFEGSHMASMTGGQQMGRMRIISVNVNGIQAAAERGLLSWLQAQNADVICLQDTRA 72
Query: 100 SENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIV 159
S L +L G A ++G GV L SR P V G+G E D+ GR +
Sbjct: 73 SAFDLDDPSFQLDGYFLYACDAELPEQG--GVALYSRLQPKAVISGLGFETADRYGRYLQ 130
Query: 160 AEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFL-KGLASRKPLVLCGDLNVAHEEI 218
A+FD + T +P+ G L + ++ + F +L K R+ + CG L VAH+++
Sbjct: 131 ADFDKVSIATLLLPSGQSGDESLNQKFKFMDDFTHYLSKQRRKRREYIYCGSLYVAHQKM 190
Query: 219 DLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNV 278
D++N + ++ GF ER E+ + AD+ R + +++W A N+
Sbjct: 191 DVKNWRECQQMPGFLAPERAWLDEVFGNLGYADALREVSREGD-QFSWWPDSEQAEMLNL 249
Query: 279 GWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITL 314
GWR DY +L+ L + ++K+ + S H P+ +
Sbjct: 250 GWRFDYQVLTPGLRRFVRNAKLPRQPRFSQHAPLIV 285
>5CFE-A nrPDB
Length = 252
Score = 348 bits (892), Expect = 3e-96, Method: Composition-based stats.
Identities = 127/258 (49%), Positives = 182/258 (70%), Gaps = 7/258 (2%)
Query: 62 LKICSWNVDGLRAWIKKK-GLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWS 120
+K+ SWNV+GLRA ++K L ++KEE DI+CLQETK + ++ + P H YW+
Sbjct: 1 MKLISWNVNGLRAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQ----PEDYHVYWN 56
Query: 121 APSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLV 180
+ K+GYSG + S+Q PL+V YGIG EEHDQEGRVI EF++ ++T Y PN+ RGL
Sbjct: 57 Y-AVKKGYSGTAVFSKQEPLQVIYGIGVEEHDQEGRVITLEFENVFVMTVYTPNSRRGLE 115
Query: 181 RLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF 240
R++YR +W+EA ++ L +KP++LCGDLNVAH+EIDL+NPK N+ NAGF+ QER+ F
Sbjct: 116 RIDYRMQWEEALLSYILELDQKKPVILCGDLNVAHQEIDLKNPKANRNNAGFSDQEREAF 175
Query: 241 GELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI 300
L+A DSFRH+YP+ AY++W+Y AR +N+GWR+DYF++S SL + D+ I
Sbjct: 176 TRFLEA-GFVDSFRHVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSESLKEQIEDASI 234
Query: 301 RSKALGSDHCPITLYLAL 318
+ +GSDHCP+ L + +
Sbjct: 235 SADVMGSDHCPVELIINI 252
>5J8N-A nrPDB
Length = 258
Score = 344 bits (883), Expect = 3e-95, Method: Composition-based stats.
Identities = 109/258 (42%), Positives = 157/258 (60%), Gaps = 5/258 (1%)
Query: 62 LKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSA 121
+ SWNV+GLRA +KK LD + E DI+C+QETK S++KLP E++ + G + + S
Sbjct: 4 YNLISWNVNGLRAAVKKGFLDLLLEHRFDIVCVQETKVSQDKLPREVKNIQGYYNYFVS- 62
Query: 122 PSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVR 181
+++ GYSGVG S+ P+K+ G+G E D+EGR + +++ FVL+ Y PN R
Sbjct: 63 -AEQNGYSGVGTFSKNKPIKLEKGMGIEVFDREGRFLRTDYEDFVLLNIYFPNGKMSQER 121
Query: 182 LEYRQRWDEAFRKFLKGLASR-KPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF 240
L Y+ + +AF + L S K LV+CGD+N AH+EIDL PK N+ +GF P+ER
Sbjct: 122 LGYKMAFYDAFLDYANALKSEGKKLVICGDVNTAHKEIDLARPKQNEMISGFLPEERAWM 181
Query: 241 GELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI 300
+ L A DSFR P Y++W+Y ARS+NVGWRLDY +S +L + + I
Sbjct: 182 DKFLAA-GYLDSFRMFNPEGG-NYSWWSYRTGARSRNVGWRLDYVFVSENLRENVKSASI 239
Query: 301 RSKALGSDHCPITLYLAL 318
+ +GSDHCP+ L L
Sbjct: 240 YPEIMGSDHCPVGLELEF 257
>3FZI-A nrPDB
Length = 265
Score = 337 bits (865), Expect = 3e-93, Method: Composition-based stats.
Identities = 105/254 (41%), Positives = 151/254 (59%), Gaps = 5/254 (1%)
Query: 60 ATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYW 119
A LKI SWNV+GLRA +K L W EE PDILCLQE K + +LP +L+ + G ++ +
Sbjct: 2 AVLKIISWNVNGLRAVHRKGFLKWFMEEKPDILCLQEIKAAPEQLPRKLRHVEG--YRSF 59
Query: 120 SAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGL 179
P++++GYSGV + ++ P + G G E D EGR+ +A+FD F+L Y PN
Sbjct: 60 FTPAERKGYSGVAMYTKVPPSSLREGFGVERFDTEGRIQIADFDDFLLYNIYFPNGKMSE 119
Query: 180 VRLEYRQRWDEAFRKFL-KGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQ 238
RL+Y+ + +AF + + + S + +++CGD N AH EIDL PK N +GF P ER
Sbjct: 120 ERLKYKLEFYDAFLEDVNRERDSGRNVIICGDFNTAHREIDLARPKENSNVSGFLPVERA 179
Query: 239 GFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDS 298
+ ++ D+FR + P YT+W+Y AR +NVGWRLDYF ++ + S
Sbjct: 180 WIDKFIEN-GYVDTFRMFNSD-PGQYTWWSYRTRARERNVGWRLDYFFVNEEFKGKVKRS 237
Query: 299 KIRSKALGSDHCPI 312
I S +GSDHCPI
Sbjct: 238 WILSDVMGSDHCPI 251
>4B5M-A nrPDB
Length = 259
Score = 335 bits (858), Expect = 2e-92, Method: Composition-based stats.
Identities = 91/256 (35%), Positives = 153/256 (59%), Gaps = 4/256 (1%)
Query: 61 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWS 120
LKI S NV+G+R+ KK +++ DI+C+QE K E L A+++ G+ H +W
Sbjct: 1 MLKIISANVNGIRSAYKKGFYEYIAASGADIVCVQELKAQEADLSADMKNPHGM-HGHWH 59
Query: 121 APSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLV 180
++K GYSGV + S++ P V G+G EE D+EGR + +F +++ Y+P+
Sbjct: 60 C-AEKRGYSGVAVYSKRKPDNVQIGMGIEEFDREGRFVRCDFGRLSVISLYLPSGSSAEE 118
Query: 181 RLEYRQRWDEAFRKFLKGLASR-KPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQG 239
R + + R+ +AF L+ + + + +V+CGD N+AH+ IDL+N KGN+KN+GF P+ER+
Sbjct: 119 RQQVKYRFLDAFYPMLEAMKNEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEEREW 178
Query: 240 FGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSK 299
G+++ + D +R LYP+ P YT+W+ A +K+VGWR+DY +++ L +
Sbjct: 179 IGKVIHKLGWTDMWRTLYPDVPG-YTWWSNRGQAYAKDVGWRIDYQMVTPELAAKAVSAH 237
Query: 300 IRSKALGSDHCPITLY 315
+ SDH P+ +
Sbjct: 238 VYKDEKFSDHAPLVVE 253
>6O1K-A nrPDB
Length = 262
Score = 332 bits (852), Expect = 1e-91, Method: Composition-based stats.
Identities = 73/255 (28%), Positives = 129/255 (50%), Gaps = 4/255 (1%)
Query: 61 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWS 120
++I S NV+G++A ++ L W++ + D++CLQ+T+ S L +L G
Sbjct: 3 AMRIISVNVNGIQAAAERGLLSWLQAQNADVICLQDTRASAFDLDDPSFQLDGYFLYACD 62
Query: 121 APSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLV 180
A ++G GV L SR P V G+G E D+ GR + A+FD + T +P+ G
Sbjct: 63 AELPEQG--GVALYSRLQPKAVISGLGFETADRYGRYLQADFDKVSIATLLLPSGQSGDE 120
Query: 181 RLEYRQRWDEAFRKFL-KGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQG 239
L + ++ + F +L K R+ + CG L VAH+++D++N + ++ GF ER
Sbjct: 121 SLNQKFKFMDDFTHYLSKQRRKRREYIYCGSLYVAHQKMDVKNWRECQQMPGFLAPERAW 180
Query: 240 FGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSK 299
E+ + AD+ R + +++W A N+GWR DY +L+ L + ++K
Sbjct: 181 LDEVFGNLGYADALREVSREGD-QFSWWPDSEQAEMLNLGWRFDYQVLTPGLRRFVRNAK 239
Query: 300 IRSKALGSDHCPITL 314
+ + S H P+ +
Sbjct: 240 LPRQPRFSQHAPLIV 254
>2J63-A nrPDB
Length = 467
Score = 322 bits (826), Expect = 9e-89, Method: Composition-based stats.
Identities = 115/377 (30%), Positives = 159/377 (42%), Gaps = 68/377 (18%)
Query: 3 KRGKKGAVAEDGD--ELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPA 60
+R A +GD EL EA + A KK++KE + D PS
Sbjct: 93 RRTSSAAKITNGDAGELIRTAEALAALNA-KKSEKEIWSDVVPFVRRTTDSDFDPS---R 148
Query: 61 TLKICSWNVDGLRAWIKKK---GLDWVKEEAPDILCLQETK--CSENKLPAELQELPGLS 115
K +WNV GLR +KK +++ E PD+LCLQETK E A L + G S
Sbjct: 149 MYKFITWNVAGLRGLLKKNASALRAFMEAEKPDVLCLQETKLNVDEADANATLGVVDGYS 208
Query: 116 HQYWSAPSDKEGYSG----------VGLLSRQCPLKV-------------SYGIGDEEHD 152
+ K GYSG V L +C S + + D
Sbjct: 209 FVDHPC-AFKRGYSGTRTYMKNSTTVKGLHARCTRGFALPSEPQADAAAGSRVLVEGAGD 267
Query: 153 QEGRVIVAEFD----------SFVLVTAYVPNAGRGLVRLEYRQR-WDEAFRKFLKGLA- 200
+EGRV+ LV YV N+G GL RL YR + +D + R++L L
Sbjct: 268 EEGRVLTTFLSPDPDSASSSSRIALVNTYVANSGMGLTRLPYRVQSFDPSMREYLHRLDT 327
Query: 201 ------------------SRKPLVLCGDLNVAHEEIDLRNP---KGNKKNAGFTPQERQG 239
S + GDLNVA + D K ++ +GF P+ER
Sbjct: 328 WATENAAVPSAAAMGSGSSPHGFIWAGDLNVAERDYDRYYAGTFKSMQECSGFAPEERMS 387
Query: 240 FGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSK 299
F E +Q D FR LYP Y+FW+ +N R +N+GWRLDYF++S L + D
Sbjct: 388 FRETMQRTNSVDIFRQLYPQAGPVYSFWSQRINGRPRNLGWRLDYFVVSSRLASYVVDCF 447
Query: 300 IRSKALGSDHCPITLYL 316
+GSDHCP +++
Sbjct: 448 PMPTVMGSDHCPFQMWM 464
>5EWT-A nrPDB
Length = 247
Score = 321 bits (823), Expect = 2e-88, Method: Composition-based stats.
Identities = 93/256 (36%), Positives = 143/256 (55%), Gaps = 9/256 (3%)
Query: 62 LKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSA 121
+KI SWNV+G+RA +KK +D+++ +++ QETK L + ++ S
Sbjct: 1 MKIVSWNVNGIRAALKKNLIDFIENNMFEVIMFQETKGDIVPLD-----FIMMGYEVISF 55
Query: 122 PSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVR 181
P+ ++GYSGV L++ P+ V G+ +E D EGR + E F ++ A P AG L R
Sbjct: 56 PAKRKGYSGVMTLTKIKPINVIKGLQIKEFDDEGRTVTLELKDFYVINAAFPRAGDNLER 115
Query: 182 LEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFG 241
L+++ +++ F+ L KP++LCGD N+AH+ ID + G TPQER F
Sbjct: 116 LDFKLKFNNEIENFVLKLRRAKPVILCGDFNIAHQNID--GAFSDPTIPGLTPQERSWFS 173
Query: 242 ELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIR 301
L ++ D+FR+L+PN Y++W+YM AR KN+G RLDY ++S L + + I
Sbjct: 174 HFL-SLGFIDTFRYLHPNV-RKYSWWSYMGKAREKNLGLRLDYCIVSEELKDRIKMADIL 231
Query: 302 SKALGSDHCPITLYLA 317
GSDH PI L L
Sbjct: 232 IDIQGSDHAPIILELT 247
>2MYI-A nrPDB
Length = 259
Score = 321 bits (822), Expect = 3e-88, Method: Composition-based stats.
Identities = 71/254 (27%), Positives = 129/254 (50%), Gaps = 4/254 (1%)
Query: 62 LKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSA 121
++I S NV+G++ +++ L W++ + D++CLQ+T+ S +L +L G A
Sbjct: 1 MRIISVNVNGIQTAVERGLLSWLQAQNADVICLQDTRASAFELDDPAYQLDGYFLYACEA 60
Query: 122 PSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVR 181
+G GV L SR P V G+G E D+ GR + A+FD + T +P+ G
Sbjct: 61 EVPAQG--GVALYSRLQPKAVITGLGFETADRYGRYLQADFDKVSIATLLLPSGQNGDED 118
Query: 182 LEYRQRWDEAFRKFL-KGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF 240
L + + + F ++L K R+ + CG L VA +++D++N + ++++ GF ER
Sbjct: 119 LNQKFKLMDDFARYLDKQRRKRREYIYCGSLYVAQQKLDIKNWRDSQQSPGFLAPERAWM 178
Query: 241 GELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI 300
E++ + D+ R + Y++W A N+GWR DY LL+ L + +++
Sbjct: 179 DEIVGNMGYVDALREVSREGD-QYSWWPDNEQAEMLNLGWRFDYQLLTPGLRRFVRSARL 237
Query: 301 RSKALGSDHCPITL 314
+ S H P+ +
Sbjct: 238 PRQPRFSQHAPLIV 251
>6FK4-A nrPDB
Length = 258
Score = 280 bits (715), Expect = 8e-76, Method: Composition-based stats.
Identities = 78/263 (29%), Positives = 132/263 (50%), Gaps = 13/263 (4%)
Query: 60 ATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYW 119
+KI +WNV+ L + + + + + PDIL LQE K ++K PA ++ G H W
Sbjct: 1 GAMKITTWNVNSLNVRLPQVQ-NLLADNPPDILVLQELKLDQDKFPAAALQMMGW-HCVW 58
Query: 120 SAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGR-G 178
S ++ Y+GV ++SR P V +G+ D + RVI A ++ Y N
Sbjct: 59 S---GQKTYNGVAIVSRSVPQDVHFGLPALPDDPQRRVIAATVSGVRVINVYCVNGEALD 115
Query: 179 LVRLEYRQRWDEAFRKFLKGLASRK-PLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQER 237
+ +Y+++W A +F++ +R LVL GD N+A + D +P+ + + ER
Sbjct: 116 SPKFKYKEQWFAALTEFVRDEMTRHGKLVLLGDFNIAPADADCYDPEKWHEKIHCSSVER 175
Query: 238 QGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCD 297
Q F LL + L DS R ++P + YT++ Y + +G R+D+ L+S ++ AL D
Sbjct: 176 QWFQNLLD-LGLTDSLRQVHPEGAF-YTWFDYRGAMFQRKLGLRIDHILVSPAMAAALKD 233
Query: 298 SKI----RSKALGSDHCPITLYL 316
++ R+ SDH P+T
Sbjct: 234 VRVDLETRALERPSDHAPVTAEF 256
>2VOA-A nrPDB
Length = 257
Score = 271 bits (692), Expect = 4e-73, Method: Composition-based stats.
Identities = 82/265 (30%), Positives = 127/265 (47%), Gaps = 15/265 (5%)
Query: 61 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWS 120
LKI ++NV+ +R+ + + W+KE PDILC+QETK K P G
Sbjct: 1 MLKIATFNVNSIRSRLHIV-IPWLKENKPDILCMQETKVENRKFPEADFHRIGY----HV 55
Query: 121 APSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGR-GL 179
S +G +GV + S + P VS+G+ E D E R+I A+ ++ YVP +
Sbjct: 56 VFSGSKGRNGVAIASLEEPEDVSFGLDSEPKD-EDRLIRAKIAGIDVINTYVPQGFKIDS 114
Query: 180 VRLEYRQRWDEAFRKFL-KGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQ 238
+ +Y+ +W E +L K + R V CGD+NVA E ID+ +P K + F R+
Sbjct: 115 EKYQYKLQWLERLYHYLQKTVDFRSFAVWCGDMNVAPEPIDVHSPDKLKNHVCFHEDARR 174
Query: 239 GFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMN-ARSKNVGWRLDYFLLSHSLL----P 293
+ ++L+ + D R ++PN YTF+ Y + A + +GWR D L + L
Sbjct: 175 AYKKILE-LGFVDVLRKIHPN-ERIYTFYDYRVKGAIERGLGWRGDAILATPPLAERCVD 232
Query: 294 ALCDSKIRSKALGSDHCPITLYLAL 318
D K R SDH P+ +
Sbjct: 233 CYADIKPRLAEKPSDHLPLVAVFDV 257
>1AKO-A nrPDB
Length = 268
Score = 264 bits (675), Expect = 3e-71, Method: Composition-based stats.
Identities = 71/269 (26%), Positives = 134/269 (49%), Gaps = 25/269 (9%)
Query: 62 LKICSWNVDGLRAWIKKKGLDWVKE-EAPDILCLQETKCSENKLPAELQELPGLSHQYWS 120
+K S+N++GLRA + L+ + E PD++ LQETK ++ P L+E+ L + +
Sbjct: 1 MKFVSFNINGLRA--RPHQLEAIVEKHQPDVIGLQETKVHDDMFP--LEEVAKLGYNVFY 56
Query: 121 APSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFD----SFVLVTAYVPNA- 175
++G+ GV LL+++ P+ V G ++ + + R+I+AE + ++ Y P
Sbjct: 57 --HGQKGHYGVALLTKETPIAVRRGFPGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGE 114
Query: 176 -GRGLVRLEYRQRWDEAFRKFLKGLASR-KPLVLCGDLNVAHEEIDLRNPKGNKKN---- 229
++ + ++ + + +L+ R P+++ GD+N++ ++D+ + N+K
Sbjct: 115 SRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRT 174
Query: 230 --AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLL 287
F P+ER+ L+ + L D+FRH P T ++++ Y N G R+D L
Sbjct: 175 GKCSFLPEEREWMDRLM-SWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLA 233
Query: 288 SHSLLPA----LCDSKIRSKALGSDHCPI 312
S L D +IRS SDH P+
Sbjct: 234 SQPLAECCVETGIDYEIRSMEKPSDHAPV 262
>5A7J-A nrPDB
Length = 313
Score = 33.1 bits (74), Expect = 0.15, Method: Composition-based stats.
Identities = 37/203 (18%), Positives = 66/203 (32%), Gaps = 40/203 (19%)
Query: 66 SWNVDGLRAWIKKKGLDWVKE--EAPDILC--LQETKCS-ENKLPAELQELPGLSHQYWS 120
++NV+G K+ W+ +APD+ C QE S E + +
Sbjct: 14 TYNVNG--QSPKECLRLWLSNGIQAPDVYCVGFQELDLSKEAFFFHDTPKEEEWFKAVSE 71
Query: 121 APSDKEGYSGVGLL-------------------SRQCPLKVSYGIGDEEHDQEGRVIVAE 161
Y+ V L+ S V GI ++ G I +
Sbjct: 72 GLHPDAKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQ 131
Query: 162 F--DSFVLVTAYVPNAGRGLVRLEY-------RQRW---DEAFRKFLKGLASRKPLVLCG 209
F S +V +++ R R ++ D + +++ ++ G
Sbjct: 132 FHNTSICVVNSHLAAHIEEYERRNQDYKDICSRMQFCQPDPSLPP--LTISNHDVILWLG 189
Query: 210 DLNVAHEEIDLRNPKGNKKNAGF 232
DLN EE+D+ K + F
Sbjct: 190 DLNYRIEELDVEKVKKLIEEKDF 212
>3Q6B-A nrPDB
Length = 189
Score = 32.7 bits (73), Expect = 0.19, Method: Composition-based stats.
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 41 GPALYEDPPDQKTSPSGKP-ATLKICSWNVDG 71
G LY + + G+ K+ V G
Sbjct: 13 GENLYFEGSHMASMTGGQQMGRYKLSGVEVSG 44
>3N1X-A nrPDB
Length = 498
Score = 31.6 bits (70), Expect = 0.47, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 11/96 (11%)
Query: 167 LVTAYVPNAGRGLVRLEYRQRWDEA-FRKFLKGLASRKPLVL---CGDLNVAHEEIDLRN 222
++ Y P R E+ W A F + L L KP DL+ H + L
Sbjct: 276 IMDYYTPLESRNQSFKEFMLEWIVAQFERQLLDLGLDKPWYWDQFMQDLDETHHGMHLGV 335
Query: 223 PKG-----NKKNAGFTPQERQGFGELLQAVPLADSF 253
AG +P+ER+ E + D++
Sbjct: 336 WYWRPTVWWDPAAGVSPEEREWLEE--KYPGWNDTW 369
>1DNP-A nrPDB
Length = 471
Score = 31.6 bits (70), Expect = 0.49, Method: Composition-based stats.
Identities = 34/230 (14%), Positives = 72/230 (31%), Gaps = 31/230 (13%)
Query: 35 KEAAGEGPALYEDPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCL 94
+ ++ ALY P Q + + P ++ + ++GL+ + +KG+ + E D +
Sbjct: 24 RNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVAS 83
Query: 95 QETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQE 154
E + ++ D E + R V G D
Sbjct: 84 VEIVKQVCAENSVTHLFYNYQYEVNERARDVE-------VERALRNVVCEGFDDSVILPP 136
Query: 155 GRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVA 214
G V+ + + + T ++ W + R+ + + + G + +
Sbjct: 137 GAVMTGNHEMYKVFT-------------PFKNAWLKRLREGMPECVAAPKVRSSGSIEPS 183
Query: 215 HEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAY 264
I L P+ + A F +E+ + R N Y
Sbjct: 184 PS-ITLNYPRQSFDTAHFPVEEKAAIAQ----------LRQFCQNGAGEY 222
>2CSX-A nrPDB
Length = 497
Score = 31.2 bits (69), Expect = 0.68, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 21/122 (17%)
Query: 188 WDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAV 247
W +A ++ L + + DL++ ++I + + + P L ++
Sbjct: 230 WFDALFNYISALEDKVEIYWPADLHLVGKDI-------LRFHTVYWPA-------FLMSL 275
Query: 248 PLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLD-YFLLSHSLLPALCDSKIRSKALG 306
P +A+ +WT SK +G +D Y ++ L + +R G
Sbjct: 276 GYE------LPKKVFAHGWWTVEGKKMSKTLGNVVDPYEVVQEYGLDEVRYFLLREVPFG 329
Query: 307 SD 308
D
Sbjct: 330 QD 331
>2MQN-A nrPDB
Length = 216
Score = 31.2 bits (69), Expect = 0.68, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Query: 192 FRKFLKGLASRKPLVLCGDLNVA-HEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLA 250
F + +C +L V + + + K + ++G E + L+ +
Sbjct: 132 FFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLL--EWDSKSDALETLGFL 189
Query: 251 DSFRHLYPNTPYAYT 265
+ ++ PN PY YT
Sbjct: 190 NHYQMKNPNGPYPYT 204
>6FTI-5 nrPDB
Length = 705
Score = 30.4 bits (67), Expect = 1.0, Method: Composition-based stats.
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 3/33 (9%)
Query: 237 RQGFGELLQAVPLADSFRHLYPNTPYAYTFWTY 269
R F + +A RH P ++W Y
Sbjct: 499 RIIFDDFREAYYW---LRHNTPEDAKVMSWWDY 528
>3QGU-A nrPDB
Length = 449
Score = 30.0 bits (66), Expect = 1.3, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 40/118 (33%), Gaps = 6/118 (5%)
Query: 99 CSENKLPAELQELPGLSHQYWSAPSDKE--GYSGVGLLSRQCPLKVSYGIGDEEHDQEGR 156
S P + E+PG S + G++GV L P + Y G+ H R
Sbjct: 255 ISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVRLGWTVVPKALKYANGEPVHADWNR 314
Query: 157 VIVAEF---DSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPL-VLCGD 210
V+ F + V GL + ++ + + LK + V GD
Sbjct: 315 VMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEMGFSVYGGD 372
>3TKA-A nrPDB
Length = 347
Score = 30.0 bits (66), Expect = 1.4, Method: Composition-based stats.
Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 9/44 (20%)
Query: 41 GPALYEDPPDQKTSPSGKP--ATLK-------ICSWNVDGLRAW 75
G LY + + G+ ++ + V+GL
Sbjct: 13 GENLYFEGSHMASMTGGQQMGRMMENYKHTTVLLDEAVNGLNIR 56
>5TKY-A nrPDB
Length = 621
Score = 30.0 bits (66), Expect = 1.5, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Query: 141 KVSYGIGDEEHDQEGRVIVAEFD----SFVLVT----AYVPNAGRGLVRLEYRQRWDEAF 192
++YG+G + D+E V++ + L+ + A G L Q +D
Sbjct: 190 AIAYGLGSGKSDKERNVLIYDLGGGAFDVSLLNIQGGVFTVKATAGDTHLG-GQDFDTNL 248
Query: 193 RKFLKGLASRK 203
++ K +RK
Sbjct: 249 LEYCKKEFTRK 259
>4NK4-A nrPDB
Length = 301
Score = 30.0 bits (66), Expect = 1.6, Method: Composition-based stats.
Identities = 4/19 (21%), Positives = 7/19 (36%)
Query: 41 GPALYEDPPDQKTSPSGKP 59
G LY + + G+
Sbjct: 13 GENLYFEGSHMASMTGGQQ 31
>4F0W-A nrPDB
Length = 188
Score = 30.0 bits (66), Expect = 1.6, Method: Composition-based stats.
Identities = 4/19 (21%), Positives = 7/19 (36%)
Query: 41 GPALYEDPPDQKTSPSGKP 59
G LY + + G+
Sbjct: 13 GENLYFEGSHMASMTGGQQ 31
>4C1R-A nrPDB
Length = 290
Score = 29.7 bits (65), Expect = 1.7, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 52/171 (30%), Gaps = 53/171 (30%)
Query: 178 GLVRLEYRQRWDEAF--RKFLKGLASRK--PLVLCGDLNVAHEEIDLRNPKGNKKNAGFT 233
+ + + R + AF ++ +K L K P +L GD NV
Sbjct: 137 HMDHIGKKARVESAFLVQEKMKELGRGKNLPAILTGDFNV-------------------- 176
Query: 234 PQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSL-- 291
Q Q + + L DS+ TF + N+ +++ R+D+ +S S
Sbjct: 177 DQTHQSYDAFVSKGVLCDSYEKCDYRYALNGTFNNFDPNSFTES---RIDHIFVSPSFHV 233
Query: 292 ------------------LPALCDSKIRSKAL------GSDHCPITLYLAL 318
+ D SDH P+ + L
Sbjct: 234 KRYGVLTDTYRSVRENSKKEDVRDCPEEITIKAYEARTPSDHFPVKVELVF 284
>1T5O-A nrPDB
Length = 351
Score = 29.7 bits (65), Expect = 1.8, Method: Composition-based stats.
Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 5/88 (5%)
Query: 142 VSYGIGDEEHDQEGRVIV-AEFDSFVLVTAYVPNAGRGLVRL----EYRQRWDEAFRKFL 196
+ G+ D+ R++ A F+ T V + + W+ + +
Sbjct: 221 MQKGMVDKVIVGADRIVRDAVFNKIGTYTVSVVAKHHNIPFYVAAPKATFDWERTAKDVV 280
Query: 197 KGLASRKPLVLCGDLNVAHEEIDLRNPK 224
R+ L+ CG +A + + NP
Sbjct: 281 IEERPREELIFCGKRQIAPLNVKVYNPA 308
>3Q9S-A nrPDB
Length = 249
Score = 29.7 bits (65), Expect = 1.9, Method: Composition-based stats.
Identities = 4/19 (21%), Positives = 7/19 (36%)
Query: 41 GPALYEDPPDQKTSPSGKP 59
G LY + + G+
Sbjct: 13 GENLYFEGSHMASMTGGQQ 31
>3Q9V-A nrPDB
Length = 133
Score = 29.7 bits (65), Expect = 1.9, Method: Composition-based stats.
Identities = 4/19 (21%), Positives = 7/19 (36%)
Query: 41 GPALYEDPPDQKTSPSGKP 59
G LY + + G+
Sbjct: 13 GENLYFEGSHMASMTGGQQ 31
>2YY8-A nrPDB
Length = 201
Score = 28.9 bits (63), Expect = 2.8, Method: Composition-based stats.
Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 150 EHDQEGRVIVAEFDSFVL-VTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLC 208
E ++ R ++ EF + +T Y + + L+ + + E F + + +
Sbjct: 61 EFNRNWRKVMKEFTGVKVHLTMYGLHVDDVIEELKEKLKKGEDFMIIVGAEKVPREVYEL 120
Query: 209 GDLNVA 214
D NVA
Sbjct: 121 ADYNVA 126
>5EQD-A nrPDB
Length = 400
Score = 28.5 bits (62), Expect = 4.1, Method: Composition-based stats.
Identities = 22/116 (18%), Positives = 35/116 (30%), Gaps = 30/116 (25%)
Query: 177 RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE 236
+ RL R +D + N +E + + +N E
Sbjct: 173 SNITRLPVRYTFDNRY------------------FNDTYEGLPVEGYTKWLEN--MAADE 212
Query: 237 RQGFGELLQAVPLADSFRHLYPNTPYAYT-----FWTYMMNARSKNVGWR-LDYFL 286
R + D R P+ P YT ++ Y +GWR LD+ L
Sbjct: 213 RIEVRLDTDWFDVRDDLRAANPDAPVVYTGPLDRYFDYAEG----RLGWRTLDFEL 264
>4UBW-A nrPDB
Length = 399
Score = 27.7 bits (60), Expect = 7.0, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 39 GEGPALYEDPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDI 91
G P + D P Q T+ + A +KI ++ + L W + PD+
Sbjct: 289 GAEPYYHLDGPVQSTAKVLEKAGMKIGDIDIVEINEAFASVVLSWARVHEPDM 341
>3UK2-A nrPDB
Length = 283
Score = 27.3 bits (59), Expect = 8.9, Method: Composition-based stats.
Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 4/63 (6%)
Query: 147 GDEEHDQEGRVIVAEFDSFVLVTAYV---PNAG-RGLVRLEYRQRWDEAFRKFLKGLASR 202
+E+ D+ R + + + YV P EYR + L+G
Sbjct: 64 PNEDFDKYPRTLQEDIEKLQKENVYVLFAPTERDMYPEPQEYRVQPPHDLGDILEGEFRP 123
Query: 203 KPL 205
Sbjct: 124 GFF 126
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.309 0.134 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,322,817
Number of Sequences: 36641
Number of extensions: 501036
Number of successful extensions: 1422
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1287
Number of HSP's gapped (non-prelim): 53
length of query: 318
length of database: 10,336,785
effective HSP length: 97
effective length of query: 221
effective length of database: 6,782,608
effective search space: 1498956368
effective search space used: 1498956368
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 59 (27.3 bits)