BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P24385 (295 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 2W99-A nrPDB 556 e-159 3G33-B nrPDB 301 3e-82 3DDQ-B nrPDB 97 6e-21 3QHW-B nrPDB 96 2e-20 1W98-B nrPDB 89 3e-18 2F2C-A nrPDB 86 2e-17 4YC3-B nrPDB 83 2e-16 1KXU-A nrPDB 43 2e-04 4NST-B nrPDB 42 4e-04 5GWJ-A nrPDB 32 0.47 4PUF-A nrPDB 30 0.89 1HYE-A nrPDB 30 0.95 4F7N-B nrPDB 30 1.5 6F41-V nrPDB 29 3.0 6CNF-R nrPDB 28 3.7 4FM9-A nrPDB 28 4.5 2PG7-A nrPDB 28 5.6 >2W99-A nrPDB Length = 271 Score = 556 bits (1434), Expect = e-159, Method: Compositional matrix adjust. Identities = 271/271 (100%), Positives = 271/271 (100%) Query: 1 MEHQLLCCEVETIRRAYPDANLLNDRVLRAMLKAEETCAPSVSYFKCVQKEVLPSMRKIV 60 MEHQLLCCEVETIRRAYPDANLLNDRVLRAMLKAEETCAPSVSYFKCVQKEVLPSMRKIV Sbjct: 1 MEHQLLCCEVETIRRAYPDANLLNDRVLRAMLKAEETCAPSVSYFKCVQKEVLPSMRKIV 60 Query: 61 ATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLT 120 ATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLT Sbjct: 61 ATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLT 120 Query: 121 AEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRK 180 AEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRK Sbjct: 121 AEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRK 180 Query: 181 HAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCD 240 HAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCD Sbjct: 181 HAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCD 240 Query: 241 PDCLRACQEQIEALLESSLRQAQQNMDPKAA 271 PDCLRACQEQIEALLESSLRQAQQNMDPKAA Sbjct: 241 PDCLRACQEQIEALLESSLRQAQQNMDPKAA 271 >3G33-B nrPDB Length = 306 Score = 301 bits (770), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 153/295 (51%), Positives = 200/295 (67%), Gaps = 7/295 (2%) Query: 4 QLLCCE-VETIRRAYPDANLLND-RVLRAMLKAEETCAPSVSYFKCVQKEVLPSMRKIVA 61 +LLCCE RA PD LL D RVL+++L+ EE P SYF+CVQ+E+ P MRK++A Sbjct: 16 ELLCCEGTRHAPRAGPDPRLLGDQRVLQSLLRLEERYVPRASYFQCVQREIKPHMRKMLA 75 Query: 62 TWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTA 121 WMLEVCEEQ+CEEEVFPLAMNYLDR+LS P +K++LQLLGA CM +ASK++ET PLT Sbjct: 76 YWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTI 135 Query: 122 EKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRKH 181 EKLCIYTD+++ P +L E+L++ KLKW+LAA+ HDF+ L ++ + + +++KH Sbjct: 136 EKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVKKH 195 Query: 182 AQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCDP 241 AQTF+ALCATD F PPSM+A GS+ AAVQGL S +S LT L+ + + Sbjct: 196 AQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACS----MSGDELTELLAGITGTEV 251 Query: 242 DCLRACQEQIEALLESSLRQ-AQQNMDPKAAEEEEEEEEEVDLACTPTDVRDVDI 295 DCLRACQEQIEA L SLR+ AQ + P + TPTDV + + Sbjct: 252 DCLRACQEQIEAALRESLREAAQTSSSPAPKAPRGSSSQGPSQTSTPTDVTAIHL 306 >3DDQ-B nrPDB Length = 269 Score = 97.4 bits (241), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 58/153 (37%), Positives = 88/153 (57%), Gaps = 5/153 (3%) Query: 18 PDANLLNDRVLRAMLKAEETCAPSVSYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEV 77 PD + LR M E C P V Y K Q ++ SMR I+ W++EV EE K + E Sbjct: 6 PDYHEDIHTYLREM---EVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNET 61 Query: 78 FPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEEL 137 LA+NY+DRFLS V + +LQL+G M +ASK +E P + TD++ +++ Sbjct: 62 LHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQV 121 Query: 138 LQMELLLVNKLKWNLAAMTPHDFI-EHFLSKMP 169 L+ME L++ L ++LAA T + F+ ++FL + P Sbjct: 122 LRMEHLVLKVLAFDLAAPTINQFLTQYFLHQQP 154 >3QHW-B nrPDB Length = 261 Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 53/136 (38%), Positives = 81/136 (59%), Gaps = 2/136 (1%) Query: 35 EETCAPSVSYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPV 94 E C P V Y K Q ++ SMR I+ W++EV EE K + E LA+NY+DRFLS V Sbjct: 19 EVKCKPKVGYMKR-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSV 77 Query: 95 KKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAA 154 + +LQL+G M +ASK +E P + TD++ +++L+ME L++ L ++LAA Sbjct: 78 LRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRMEHLVLKVLAFDLAA 137 Query: 155 MTPHDFI-EHFLSKMP 169 T + F+ ++FL P Sbjct: 138 PTVNQFLTQYFLHLQP 153 >1W98-B nrPDB Length = 283 Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 103/193 (53%), Gaps = 11/193 (5%) Query: 25 DRVLRAMLKAEETCAPSVSYFKCVQKEVL-PSMRKIVATWMLEVCEEQKCEEEVFPLAMN 83 + V + ML E+T + + Q +L P MR I+ W++EVCE K E F LA + Sbjct: 19 EEVWKIMLNKEKTYLRDQHFLE--QHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQD 76 Query: 84 YLDRFLSL-EPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMEL 142 + DR+++ E V K+ LQL+G + +F+A+K++E P + TD + +E+L MEL Sbjct: 77 FFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMEL 136 Query: 143 LLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQT-------FVALCATDVKF 195 +++ LKW L+ +T ++ ++ + ++ ++ ++ Q + LC DV Sbjct: 137 MIMKALKWRLSPLTIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDC 196 Query: 196 ISNPPSMVAAGSV 208 + P ++AA ++ Sbjct: 197 LEFPYGILAASAL 209 >2F2C-A nrPDB Length = 254 Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 102/206 (49%), Gaps = 4/206 (1%) Query: 13 IRRAYPDANLLNDRVLRAMLKAEETCAPSVSYFKCVQKEVLPSMRKIVATWMLEVCEEQK 72 + RA D+ + D + LK E P + +Q EV R I+ TWM +CE + Sbjct: 8 LNRAKIDSTTMKDPRVLNNLKLRELLLPKFTSLWEIQTEVTVDNRTILLTWMHLLCESFE 67 Query: 73 CEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSI 132 ++ VFPL+++ LDR+L + K LQ +GA C+ + SK++ P+T KL + + Sbjct: 68 LDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCF 127 Query: 133 RPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFV--ALCA 190 EL+ E ++ LKW+ A+ DF+ + + E+ + + A T + AL Sbjct: 128 TNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPEDLWPQLYEAASTTICKALIQ 187 Query: 191 TDVKFISNPPSMVAAGSVVAAVQGLN 216 ++ +S P ++ AG ++ ++ N Sbjct: 188 PNIALLS--PGLICAGGLLTTIETDN 211 >4YC3-B nrPDB Length = 273 Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 87/170 (51%), Gaps = 4/170 (2%) Query: 47 CVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATC 106 + +EV +MR I+ W+++V + + +E + ++ +DRF+ V K LQL+G T Sbjct: 32 LLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTA 91 Query: 107 MFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLS 166 MF+ASK +E P TDN+ ++ QME+ ++ L + L P F+ S Sbjct: 92 MFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRR-AS 150 Query: 167 KMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLN 216 K+ E + + + K+ + L D + PPS +AAG+ A++ L+ Sbjct: 151 KIGEVDVEQHTLAKY---LMELTMLDYDMVHFPPSQIAAGAFSLALKILD 197 >1KXU-A nrPDB Length = 333 Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 29/155 (18%) Query: 84 YLDRFLSLEPVKKSRLQLLGATCMFVASKMKE-------------TIPLTAEKLCIYTDN 130 Y RF V + +++ TC F+A K+ E PL EK Sbjct: 96 YFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLGQEKAL----- 150 Query: 131 SIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFL----SKMPEAEENKQIIRKHAQTFV 186 E++L+ ELLL+ +L ++L P+ E FL ++ P EN +I+RK A F+ Sbjct: 151 ----EQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYP-ILENPEILRKTADDFL 205 Query: 187 ALCATDVKFISNPPSMVAAGSVVAAVQ--GLNLRS 219 A ++ PS +A +++++ G+ + S Sbjct: 206 NRIALTDAYLLYTPSQIALTAILSSASRAGITMES 240 >4NST-B nrPDB Length = 268 Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 16/149 (10%) Query: 57 RKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKET 116 R+ A ++ +V + + Y RF K+ + GA C+F+A K++ET Sbjct: 51 RREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEET 110 Query: 117 ------IPLTAEKL------CIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHF 164 I TA L + D+ EE++ +E +L+ +K++L P+ F+ + Sbjct: 111 PKKCKDIIKTARSLLNDVQFGQFGDDP--KEEVMVLERILLQTIKFDLQVEHPYQFLLKY 168 Query: 165 LSKMPEAEENKQIIRKHAQTFV--ALCAT 191 ++ + Q + + A TFV +LC T Sbjct: 169 AKQLKGDKNKIQKLVQMAWTFVNDSLCTT 197 >5GWJ-A nrPDB Length = 803 Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 3/58 (5%) Query: 119 LTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQ 176 L K+ I TD + ++ ++ LL+N + N ++ H F+E F++ + +A +NKQ Sbjct: 129 LRYGKIMIMTD---QDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQ 183 >4PUF-A nrPDB Length = 637 Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust. Identities = 12/42 (28%), Positives = 21/42 (50%) Query: 42 VSYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMN 83 + Y Q P ++ V+ W++ + E+ E VF +AMN Sbjct: 372 LDYLGDTQNTRHPDFKEQVSAWLMRLAEDSALRETVFIIAMN 413 >1HYE-A nrPDB Length = 313 Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust. Identities = 12/35 (34%), Positives = 22/35 (62%) Query: 165 LSKMPEAEENKQIIRKHAQTFVALCATDVKFISNP 199 +S+M A+ N +I+ K+A+ +C T + I+NP Sbjct: 90 MSRMDLAKTNAKIVGKYAKKIAEICDTKIFVITNP 124 >4F7N-B nrPDB Length = 287 Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust. Identities = 16/47 (34%), Positives = 25/47 (53%) Query: 69 EEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKE 115 E K ++V A Y RF + +K L+ TC+F+ASK++E Sbjct: 57 EHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEE 103 >6F41-V nrPDB Length = 596 Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust. Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 15/131 (11%) Query: 94 VKKSRLQLLGATCMFVASKMKET----IPLTAE-KLCIYTDNSIRPEELLQMELLLVNKL 148 V+ R Q + A+C++VA + ++T I ++ ++ +Y+ + L +V KL Sbjct: 117 VQGRRSQNVIASCLYVACRKEKTHHMLIDFSSRLQVSVYS--------IGATFLKMVKKL 168 Query: 149 KWN-LAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGS 207 L P FI+HF K+ A++ +++ K A + D F P+ +A Sbjct: 169 HITELPLADPSLFIQHFAEKLDLADKKIKVV-KDAVKLAQRMSKDWMFEGRRPAGIAGAC 227 Query: 208 VVAAVQGLNLR 218 ++ A + NLR Sbjct: 228 ILLACRMNNLR 238 >6CNF-R nrPDB Length = 736 Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust. Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 15/131 (11%) Query: 94 VKKSRLQLLGATCMFVASKMKET----IPLTAE-KLCIYTDNSIRPEELLQMELLLVNKL 148 V+ R Q + A+C++VA + ++T I ++ ++ +Y+ + L+M V KL Sbjct: 117 VQGRRSQNVIASCLYVACRKEKTHHMLIDFSSRLQVSVYSIGAT----FLKM----VKKL 168 Query: 149 KWN-LAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGS 207 L P FI+HF K+ A++ +++ K A + D F P+ +A Sbjct: 169 HITELPLADPSLFIQHFAEKLDLADKKIKVV-KDAVKLAQRMSKDWMFEGRRPAGIAGAC 227 Query: 208 VVAAVQGLNLR 218 ++ A + NLR Sbjct: 228 ILLACRMNNLR 238 >4FM9-A nrPDB Length = 763 Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust. Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 3/58 (5%) Query: 119 LTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQ 176 L K+ I TD ++ ++ LL+N + N ++ H F+E F++ + + +NKQ Sbjct: 101 LRYGKIMIMTDQD---QDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQ 155 >2PG7-A nrPDB Length = 476 Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 11/67 (16%) Query: 136 ELLQ-MELLLVNKLKWN---LAAMTPHDFIEHFLSKMPEAEEN-------KQIIRKHAQT 184 +LLQ +E + K++ N L +P DFI+ FL +M E E+N K ++ Q Sbjct: 217 QLLQGLEDFIAKKVEHNQRTLDPNSPRDFIDSFLIRMQEEEKNPNTEFYLKNLVMTTLQL 276 Query: 185 FVALCAT 191 FV T Sbjct: 277 FVGGTET 283 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 3G33-B nrPDB 384 e-107 2W99-A nrPDB 381 e-106 2F2C-A nrPDB 224 4e-59 1W98-B nrPDB 209 8e-55 3DDQ-B nrPDB 205 2e-53 3QHW-B nrPDB 200 7e-52 4YC3-B nrPDB 199 1e-51 4NST-B nrPDB 142 1e-34 1KXU-A nrPDB 121 3e-28 Sequences not found previously or not previously below threshold: 4F7N-B nrPDB 75 4e-14 2IVX-A nrPDB 66 2e-11 2PK2-A nrPDB 65 3e-11 3MIA-B nrPDB 65 4e-11 6GZH-B nrPDB 64 8e-11 1ZP2-A nrPDB 52 3e-07 5IYC-M nrPDB 48 4e-06 5WH1-A nrPDB 46 3e-05 6CNF-R nrPDB 33 0.19 3KJX-A nrPDB 32 0.21 6F41-V nrPDB 32 0.25 6HIV-CQ nrPDB 31 0.47 2VYC-A nrPDB 30 1.3 4I6V-A nrPDB 29 2.0 2YF0-A nrPDB 29 2.7 4NIF-A nrPDB 28 4.2 3OZ2-A nrPDB 27 7.7 >3G33-B nrPDB Length = 306 Score = 384 bits (986), Expect = e-107, Method: Composition-based stats. Identities = 153/295 (51%), Positives = 200/295 (67%), Gaps = 7/295 (2%) Query: 4 QLLCCE-VETIRRAYPDANLLND-RVLRAMLKAEETCAPSVSYFKCVQKEVLPSMRKIVA 61 +LLCCE RA PD LL D RVL+++L+ EE P SYF+CVQ+E+ P MRK++A Sbjct: 16 ELLCCEGTRHAPRAGPDPRLLGDQRVLQSLLRLEERYVPRASYFQCVQREIKPHMRKMLA 75 Query: 62 TWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTA 121 WMLEVCEEQ+CEEEVFPLAMNYLDR+LS P +K++LQLLGA CM +ASK++ET PLT Sbjct: 76 YWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTI 135 Query: 122 EKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRKH 181 EKLCIYTD+++ P +L E+L++ KLKW+LAA+ HDF+ L ++ + + +++KH Sbjct: 136 EKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVKKH 195 Query: 182 AQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCDP 241 AQTF+ALCATD F PPSM+A GS+ AAVQGL S +S LT L+ + + Sbjct: 196 AQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACS----MSGDELTELLAGITGTEV 251 Query: 242 DCLRACQEQIEALLESSLRQ-AQQNMDPKAAEEEEEEEEEVDLACTPTDVRDVDI 295 DCLRACQEQIEA L SLR+ AQ + P + TPTDV + + Sbjct: 252 DCLRACQEQIEAALRESLREAAQTSSSPAPKAPRGSSSQGPSQTSTPTDVTAIHL 306 >2W99-A nrPDB Length = 271 Score = 381 bits (978), Expect = e-106, Method: Composition-based stats. Identities = 271/271 (100%), Positives = 271/271 (100%) Query: 1 MEHQLLCCEVETIRRAYPDANLLNDRVLRAMLKAEETCAPSVSYFKCVQKEVLPSMRKIV 60 MEHQLLCCEVETIRRAYPDANLLNDRVLRAMLKAEETCAPSVSYFKCVQKEVLPSMRKIV Sbjct: 1 MEHQLLCCEVETIRRAYPDANLLNDRVLRAMLKAEETCAPSVSYFKCVQKEVLPSMRKIV 60 Query: 61 ATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLT 120 ATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLT Sbjct: 61 ATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLT 120 Query: 121 AEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRK 180 AEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRK Sbjct: 121 AEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRK 180 Query: 181 HAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCD 240 HAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCD Sbjct: 181 HAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCD 240 Query: 241 PDCLRACQEQIEALLESSLRQAQQNMDPKAA 271 PDCLRACQEQIEALLESSLRQAQQNMDPKAA Sbjct: 241 PDCLRACQEQIEALLESSLRQAQQNMDPKAA 271 >2F2C-A nrPDB Length = 254 Score = 224 bits (570), Expect = 4e-59, Method: Composition-based stats. Identities = 62/245 (25%), Positives = 115/245 (46%), Gaps = 8/245 (3%) Query: 13 IRRAYPDANLLNDRVLRAMLKAEETCAPSVSYFKCVQKEVLPSMRKIVATWMLEVCEEQK 72 + RA D+ + D + LK E P + +Q EV R I+ TWM +CE + Sbjct: 8 LNRAKIDSTTMKDPRVLNNLKLRELLLPKFTSLWEIQTEVTVDNRTILLTWMHLLCESFE 67 Query: 73 CEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSI 132 ++ VFPL+++ LDR+L + K LQ +GA C+ + SK++ P+T KL + + Sbjct: 68 LDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCF 127 Query: 133 RPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFV--ALCA 190 EL+ E ++ LKW+ A+ DF+ + + E+ + + A T + AL Sbjct: 128 TNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPEDLWPQLYEAASTTICKALIQ 187 Query: 191 TDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCDPDCLRACQEQ 250 ++ +S P ++ AG ++ ++ N N + LS ++ + +R ++Q Sbjct: 188 PNIALLS--PGLICAGGLLTTIETDN----TNCRPWTCYLEDLSSILNFSTNTVRTVKDQ 241 Query: 251 IEALL 255 + Sbjct: 242 VSEAF 246 >1W98-B nrPDB Length = 283 Score = 209 bits (533), Expect = 8e-55, Method: Composition-based stats. Identities = 55/193 (28%), Positives = 103/193 (53%), Gaps = 11/193 (5%) Query: 25 DRVLRAMLKAEETCAPSVSYFKCVQKEVL-PSMRKIVATWMLEVCEEQKCEEEVFPLAMN 83 + V + ML E+T + + Q +L P MR I+ W++EVCE K E F LA + Sbjct: 19 EEVWKIMLNKEKTYLRDQHFLE--QHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQD 76 Query: 84 YLDRFLSL-EPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMEL 142 + DR+++ E V K+ LQL+G + +F+A+K++E P + TD + +E+L MEL Sbjct: 77 FFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMEL 136 Query: 143 LLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQT-------FVALCATDVKF 195 +++ LKW L+ +T ++ ++ + ++ ++ ++ Q + LC DV Sbjct: 137 MIMKALKWRLSPLTIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDC 196 Query: 196 ISNPPSMVAAGSV 208 + P ++AA ++ Sbjct: 197 LEFPYGILAASAL 209 >3DDQ-B nrPDB Length = 269 Score = 205 bits (522), Expect = 2e-53, Method: Composition-based stats. Identities = 77/254 (30%), Positives = 123/254 (48%), Gaps = 18/254 (7%) Query: 18 PDANLLNDRVLRAMLKAEETCAPSVSYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEV 77 PD + LR M E C P V Y K Q ++ SMR I+ W++EV EE K + E Sbjct: 6 PDYHEDIHTYLREM---EVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNET 61 Query: 78 FPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEEL 137 LA+NY+DRFLS V + +LQL+G M +ASK +E P + TD++ +++ Sbjct: 62 LHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQV 121 Query: 138 LQMELLLVNKLKWNLAAMTPHDFI-EHFLSKMPEAEENKQIIRKHAQTFVALCATDVK-F 195 L+ME L++ L ++LAA T + F+ ++FL + P + A L D + Sbjct: 122 LRMEHLVLKVLAFDLAAPTINQFLTQYFLHQQPAN----CKVESLAMFLGELSLIDADPY 177 Query: 196 ISNPPSMVAAGSVVAAVQGLNLRSPNNFL---SYYRLTRFLSRVIKCDPDCLRACQEQIE 252 + PS++AA + A+ + +S L + Y L ++ LRA Q Sbjct: 178 LKYLPSVIAAAAFHLALYTVTGQSWPESLVQKTGYTLETLKPCLLDLHQTYLRAPQHA-- 235 Query: 253 ALLESSLRQAQQNM 266 + S+R+ +N Sbjct: 236 ---QQSIREKYKNS 246 >3QHW-B nrPDB Length = 261 Score = 200 bits (508), Expect = 7e-52, Method: Composition-based stats. Identities = 73/259 (28%), Positives = 120/259 (46%), Gaps = 19/259 (7%) Query: 18 PDANLLNDRVLRAMLKAEETCAPSVSYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEV 77 PD LR M E C P V Y K Q ++ SMR I+ W++EV EE K + E Sbjct: 5 PDYQEDIHTYLREM---EVKCKPKVGYMKR-QPDITNSMRAILVDWLVEVGEEYKLQNET 60 Query: 78 FPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEEL 137 LA+NY+DRFLS V + +LQL+G M +ASK +E P + TD++ +++ Sbjct: 61 LHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKKQV 120 Query: 138 LQMELLLVNKLKWNLAAMTPHDFI-EHFLSKMPEAEENKQIIRKHAQTFVALCATDVK-F 195 L+ME L++ L ++LAA T + F+ ++FL P + A L D + Sbjct: 121 LRMEHLVLKVLAFDLAAPTVNQFLTQYFLHLQPAN----CKVESLAMFLGELSLIDADPY 176 Query: 196 ISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCDPDCLRACQEQIEALL 255 + PS++A + A+ + +S L++ + L+ C + Sbjct: 177 LKYLPSLIAGAAFHLALYTVTGQSWP---------ESLAQQTGYTLESLKPCLVDLHQTY 227 Query: 256 ESSLRQAQQNMDPKAAEEE 274 + + AQQ++ K + Sbjct: 228 LKAPQHAQQSIREKYKHSK 246 >4YC3-B nrPDB Length = 273 Score = 199 bits (506), Expect = 1e-51, Method: Composition-based stats. Identities = 56/209 (26%), Positives = 98/209 (46%), Gaps = 9/209 (4%) Query: 19 DANLLNDRVLRAMLKAEETCAPSVSYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVF 78 + LR L+ E+ P + +EV +MR I+ W+++V + + +E Sbjct: 9 EYVKDIYAYLRQ-LEEEQAVRPKY----LLGREVTGNMRAILIDWLVQVQMKFRLLQETM 63 Query: 79 PLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELL 138 + ++ +DRF+ V K LQL+G T MF+ASK +E P TDN+ ++ Sbjct: 64 YMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIR 123 Query: 139 QMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISN 198 QME+ ++ L + L P F+ SK+ E + + + K+ + L D + Sbjct: 124 QMEMKILRALNFGLGRPLPLHFLRR-ASKIGEVDVEQHTLAKY---LMELTMLDYDMVHF 179 Query: 199 PPSMVAAGSVVAAVQGLNLRSPNNFLSYY 227 PPS +AAG+ A++ L+ L +Y Sbjct: 180 PPSQIAAGAFSLALKILDNGEWTPTLQHY 208 >4NST-B nrPDB Length = 268 Score = 142 bits (359), Expect = 1e-34, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 73/181 (40%), Gaps = 14/181 (7%) Query: 43 SYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLL 102 S + + R+ A ++ +V + + Y RF K+ + Sbjct: 37 SQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVT 96 Query: 103 GATCMFVASKMKET------IPLTAE------KLCIYTDNSIRPEELLQMELLLVNKLKW 150 GA C+F+A K++ET I TA + + D+ EE++ +E +L+ +K+ Sbjct: 97 GACCLFLAGKVEETPKKCKDIIKTARSLLNDVQFGQFGDDP--KEEVMVLERILLQTIKF 154 Query: 151 NLAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVA 210 +L P+ F+ + ++ + Q + + A TFV + P ++A + Sbjct: 155 DLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYL 214 Query: 211 A 211 A Sbjct: 215 A 215 >1KXU-A nrPDB Length = 333 Score = 121 bits (304), Expect = 3e-28, Method: Composition-based stats. Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 29/176 (16%) Query: 64 MLEVCEEQK--CEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKE------ 115 +LE C K V A Y RF V + +++ TC F+A K+ E Sbjct: 74 LLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSP 133 Query: 116 -------TIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKM 168 PL EK E++L+ ELLL+ +L ++L P+ E FL + Sbjct: 134 QFVGNLRESPLGQEKAL---------EQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDL 184 Query: 169 PE---AEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQ--GLNLRS 219 EN +I+RK A F+ A ++ PS +A +++++ G+ + S Sbjct: 185 KTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMES 240 >4F7N-B nrPDB Length = 287 Score = 74.8 bits (182), Expect = 4e-14, Method: Composition-based stats. Identities = 40/217 (18%), Positives = 77/217 (35%), Gaps = 20/217 (9%) Query: 27 VLRAMLKAEETCAPSVSYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLD 86 L+ +L ++ K + +E ++ + + E K ++V A Y Sbjct: 15 YLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFK 74 Query: 87 RFLSLEPVKKSRLQLLGATCMFVASKMKE--------------TIPLTAEKLCIYTDNSI 132 RF + +K L+ TC+F+ASK++E ++ T + Sbjct: 75 RFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAFPKEFPY 134 Query: 133 RPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATD 192 R +L+ E L+ + L P+ + ++ M + + + A V Sbjct: 135 RMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLLPL----AWRIVNDTYRT 190 Query: 193 VKFISNPPSMVAAGSVVAA--VQGLNLRSPNNFLSYY 227 + PP M+A + A VQ + R LS Sbjct: 191 DLCLLYPPFMIALACLHVACVVQQKDARQWFAELSVD 227 >2IVX-A nrPDB Length = 257 Score = 66.3 bits (160), Expect = 2e-11, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 67/181 (37%), Gaps = 18/181 (9%) Query: 55 SMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMK 114 S R+ A + E+ + + A+ Y+ RF K ++ +T +F+A+K++ Sbjct: 29 SCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVE 88 Query: 115 ETIPL-------------TAEKLCIYTDNSI--RPEELLQMELLLVNKLKWNLAAMTPHD 159 E E L ++ + EL+ +E +++ L + + PH Sbjct: 89 EQARKLEHVIKVAHACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHT 148 Query: 160 FIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRS 219 + + +++ Q A + L + P+++A + A + N Sbjct: 149 DVVKCTQLVRASKDLAQTSYFMATNSLHLTTF---CLQYKPTVIACVCIHLACKWSNWEI 205 Query: 220 P 220 P Sbjct: 206 P 206 >2PK2-A nrPDB Length = 358 Score = 65.2 bits (157), Expect = 3e-11, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 68/189 (35%), Gaps = 20/189 (10%) Query: 48 VQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCM 107 V + S R+ A + ++ + + A+ Y+ RF ++ + + + Sbjct: 29 VDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAAL 88 Query: 108 FVASKMKETIPLTAEKLCIYTDNSIRPEE----------------LLQMELLLVNKLKWN 151 F+A+K++E P E + + P+E L+ +E +++ L + Sbjct: 89 FLAAKVEEQ-PKKLEHVIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFE 147 Query: 152 LAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAA 211 L PH + + +++ Q A + L + P +VA + A Sbjct: 148 LTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFS---LQYTPPVVACVCIHLA 204 Query: 212 VQGLNLRSP 220 + N P Sbjct: 205 CKWSNWEIP 213 >3MIA-B nrPDB Length = 266 Score = 64.8 bits (156), Expect = 4e-11, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 68/189 (35%), Gaps = 20/189 (10%) Query: 48 VQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCM 107 V + S R+ A + ++ + + A+ Y+ RF ++ + + + Sbjct: 29 VDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTQFPGNSVAPAAL 88 Query: 108 FVASKMKETIPLTAEKLCIYTDNSIRPEE----------------LLQMELLLVNKLKWN 151 F+A+K++E P E + + P+E L+ +E +++ L + Sbjct: 89 FLAAKVEEQ-PKKLEHVIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFE 147 Query: 152 LAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAA 211 L PH + + +++ Q A + L + P +VA + A Sbjct: 148 LTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFS---LQYTPPVVACVCIHLA 204 Query: 212 VQGLNLRSP 220 + N P Sbjct: 205 CKWSNWEIP 213 >6GZH-B nrPDB Length = 726 Score = 64.0 bits (154), Expect = 8e-11, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 67/189 (35%), Gaps = 20/189 (10%) Query: 48 VQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCM 107 V + S R+ A + ++ + + A+ Y+ RF ++ + + + Sbjct: 29 VDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAAL 88 Query: 108 FVASKMKETIPLTAEKLCIYTDNSIRPEE----------------LLQMELLLVNKLKWN 151 F+A+K+ E P E + + P+E L+ +E +++ L + Sbjct: 89 FLAAKV-EGQPKKLEHVIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFE 147 Query: 152 LAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAA 211 L PH + + +++ Q A + L + P +VA + A Sbjct: 148 LTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFS---LQYTPPVVACVCIHLA 204 Query: 212 VQGLNLRSP 220 + N P Sbjct: 205 CKWSNWEIP 213 >1ZP2-A nrPDB Length = 235 Score = 52.1 bits (123), Expect = 3e-07, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 62/151 (41%), Gaps = 12/151 (7%) Query: 68 CEEQKCEEEVFPLAMNYLDRFLSLEPVKK-SRLQLLGATCMFVASKMKETIPLTAEKLCI 126 + + + V A+ L R++ + +K L+ L ATC++++ K++E P+ +C Sbjct: 39 GDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEEC-PVHIRTICN 97 Query: 127 YTDN------SIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRK 180 ++ + + ++E +++ L L P+ +E KQ+ + Sbjct: 98 EANDLWSLKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFH--DGIINQKQL--E 153 Query: 181 HAQTFVALCATDVKFISNPPSMVAAGSVVAA 211 A + V + P +A +++ + Sbjct: 154 FAWSIVNDSYASSLCLMAHPHQLAYAALLIS 184 >5IYC-M nrPDB Length = 316 Score = 48.2 bits (113), Expect = 4e-06, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 74/168 (44%), Gaps = 11/168 (6%) Query: 49 QKEVLPSMRKIVATW--MLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATC 106 ++ + S R ++ + + + + + N + + +K + + C Sbjct: 104 RRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASAC 163 Query: 107 MFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLS 166 +++A + +E +P T +++C + I +E+ + L++ L+ ++ +T DF+ F S Sbjct: 164 LYIACR-QEGVPRTFKEICAVS--RISKKEIGRCFKLILKALETSVDLITTGDFMSRFCS 220 Query: 167 KMPEAEENKQIIRKHAQTFVALCATDVKFIS-NPPSMVAAGSVVAAVQ 213 + ++ + A T +A A ++ + P VAA ++ A Q Sbjct: 221 NLCLPKQ-----VQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQ 263 >5WH1-A nrPDB Length = 211 Score = 45.5 bits (106), Expect = 3e-05, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 65/148 (43%), Gaps = 9/148 (6%) Query: 67 VCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCI 126 + + + N + + +K + + C+++A + +E +P T +++C Sbjct: 19 MADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACR-QEGVPRTFKEICA 77 Query: 127 YTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFV 186 + I +E+ + L++ L+ ++ +T DF+ F S + ++ + A T + Sbjct: 78 VS--RISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQ-----VQMAATHI 130 Query: 187 ALCATDVKFI-SNPPSMVAAGSVVAAVQ 213 A A ++ + P VAA ++ A Q Sbjct: 131 ARKAVELDLVPGRSPISVAAAAIYMASQ 158 >6CNF-R nrPDB Length = 736 Score = 32.8 bits (73), Expect = 0.19, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 15/136 (11%) Query: 89 LSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQME-----LL 143 L+ V+ R Q + A+C++VA + ++T + + ++ L Sbjct: 112 LANNFVQGRRSQNVIASCLYVACRKEKTHHMLI--------DFSSRLQVSVYSIGATFLK 163 Query: 144 LVNKLKW-NLAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSM 202 +V KL L P FI+HF K+ A+ K + K A + D F P+ Sbjct: 164 MVKKLHITELPLADPSLFIQHFAEKLDLAD-KKIKVVKDAVKLAQRMSKDWMFEGRRPAG 222 Query: 203 VAAGSVVAAVQGLNLR 218 +A ++ A + NLR Sbjct: 223 IAGACILLACRMNNLR 238 >3KJX-A nrPDB Length = 344 Score = 32.4 bits (72), Expect = 0.21, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 8/106 (7%) Query: 179 RKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQ-------GLNLRSPNNFLSYYRLTR 231 R+ Q + + D+ F+ M+AAG ++ ++ + L NN L R Sbjct: 235 REMTQAMLER-SPDLDFLYYSNDMIAAGGLLYLLEQGIDIPGQIGLAGFNNVELLQGLPR 293 Query: 232 FLSRVIKCDPDCLRACQEQIEALLESSLRQAQQNMDPKAAEEEEEE 277 L+ + C + R E I LE + + + + + Sbjct: 294 KLATMDACRLEIGRKAAEIIAKRLEDPEAEIETRITLEPKISYGDT 339 >6F41-V nrPDB Length = 596 Score = 32.4 bits (72), Expect = 0.25, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 15/136 (11%) Query: 89 LSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQME-----LL 143 L+ V+ R Q + A+C++VA + ++T + + ++ L Sbjct: 112 LANNFVQGRRSQNVIASCLYVACRKEKTHHMLI--------DFSSRLQVSVYSIGATFLK 163 Query: 144 LVNKLKW-NLAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSM 202 +V KL L P FI+HF K+ A+ K + K A + D F P+ Sbjct: 164 MVKKLHITELPLADPSLFIQHFAEKLDLAD-KKIKVVKDAVKLAQRMSKDWMFEGRRPAG 222 Query: 203 VAAGSVVAAVQGLNLR 218 +A ++ A + NLR Sbjct: 223 IAGACILLACRMNNLR 238 >6HIV-CQ nrPDB Length = 307 Score = 31.3 bits (69), Expect = 0.47, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 3/60 (5%) Query: 215 LNLRSPNNFLSYYRLTRFLSRVIKCDPDCLRACQEQIEALLESSLRQAQQNMDPKAAEEE 274 L L++ L Y ++R R++K + QE++ A ++ ++ A + P + Sbjct: 177 LGLKAVPPPLFGYPVSR---RIVKLNLTSTEGTQEKLAAAIQEHVQDAYRFSGPTPDQPR 233 >2VYC-A nrPDB Length = 755 Score = 30.1 bits (66), Expect = 1.3, Method: Composition-based stats. Identities = 13/83 (15%), Positives = 32/83 (38%), Gaps = 5/83 (6%) Query: 111 SKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKL-----KWNLAAMTPHDFIEHFL 165 +++ET A + I P +++ + + KW T F H+ Sbjct: 547 GELEETGVPAALVTAWLGRHGIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCSFKRHYD 606 Query: 166 SKMPEAEENKQIIRKHAQTFVAL 188 + P A+ +++ ++ T+ + Sbjct: 607 ANTPLAQVMPELVEQYPDTYANM 629 >4I6V-A nrPDB Length = 434 Score = 29.3 bits (64), Expect = 2.0, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 43/109 (39%), Gaps = 13/109 (11%) Query: 58 KIVATWMLEVCEEQ------KCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVAS 111 I W++E+CE + + + ++ ++ +S +++ LQ +F+ + Sbjct: 88 TIQVKWLIELCERFFGFQDDRLTPDNWEALYDHSEKLMSAPDWEQTVLQKSQLEAVFLTN 147 Query: 112 KMKETIPLTAEKL-----CIYTDNSIRPEELLQMELLLVNKLKWNLAAM 155 + PLT C+ TD+ + + ++ L ++ A Sbjct: 148 DFDD--PLTGFDTKKYIPCLRTDDLVFHLQKPEVRQRLAKATGFDCATP 194 >2YF0-A nrPDB Length = 512 Score = 28.9 bits (63), Expect = 2.7, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 5/55 (9%) Query: 82 MNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPL-----TAEKLCIYTDNS 131 + LDRF + L L +F+ S KET L + EKL + T Sbjct: 12 VKLLDRFSTSNKSLTGTLYLTATHLLFIDSHQKETWILHHHIASVEKLALTTSGC 66 >4NIF-A nrPDB Length = 333 Score = 28.2 bits (61), Expect = 4.2, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 4/95 (4%) Query: 133 RPEELLQM---ELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALC 189 PEE+L ++ WN + T D + L P + + +H Sbjct: 213 TPEEILTRIGSGKFTLSGGNWNTVSETAKDLVSKMLHVDPHQRLTAKQVLQHPWVT-QKD 271 Query: 190 ATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFL 224 +S+ + G++ A LN P L Sbjct: 272 KLPQSQLSHQDLQLVKGAMAATYSALNSSKPTPQL 306 >3OZ2-A nrPDB Length = 397 Score = 27.4 bits (59), Expect = 7.7, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%) Query: 83 NYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNS 131 NYLDRF+ P K + T SK+K +P+T L + D + Sbjct: 240 NYLDRFIENHPGLKKGQDIQLVTGGVSVSKVK--MPITMPGLMLVGDAA 286 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.310 0.127 0.314 Lambda K H 0.267 0.0389 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,046,332 Number of Sequences: 36641 Number of extensions: 288116 Number of successful extensions: 1295 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 23 Number of HSP's that attempted gapping in prelim test: 1204 Number of HSP's gapped (non-prelim): 87 length of query: 295 length of database: 10,336,785 effective HSP length: 96 effective length of query: 199 effective length of database: 6,819,249 effective search space: 1357030551 effective search space used: 1357030551 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 58 (27.0 bits)