BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P24203 (318 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 4IXM-A nrPDB 657 0.0 2J28-9 nrPDB 32 0.42 5GAF-i nrPDB 32 0.46 5GAD-i nrPDB 32 0.51 1POY-1 nrPDB 31 0.65 4C7O-A nrPDB 31 0.66 6HE9-H nrPDB 31 0.67 2YVU-A nrPDB 31 0.71 6HE4-H nrPDB 31 0.81 4WZY-A nrPDB 30 1.0 1IXK-A nrPDB 30 1.1 1ZU4-A nrPDB 30 1.4 4AIP-A nrPDB 29 2.2 4M1U-A nrPDB 29 2.8 3H76-A nrPDB 28 3.9 1K6M-A nrPDB 28 4.0 2QEN-A nrPDB 28 4.4 5XNX-A nrPDB 28 5.2 6HQA-K nrPDB 27 8.1 3E70-C nrPDB 27 9.3 >4IXM-A nrPDB Length = 318 Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/318 (100%), Positives = 318/318 (100%) Query: 1 MNPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTL 60 MNPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTL Sbjct: 1 MNPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTL 60 Query: 61 TNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQR 120 TNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQR Sbjct: 61 TNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQR 120 Query: 121 YLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVAGEAEKLHERLARINARA 180 YLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVAGEAEKLHERLARINARA Sbjct: 121 YLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVAGEAEKLHERLARINARA 180 Query: 181 PVYTVTHGDIDLGLLFNTNGFMLEENVVSTKPRFHFIADKQNDISSIVVELDYPVDISEV 240 PVYTVTHGDIDLGLLFNTNGFMLEENVVSTKPRFHFIADKQNDISSIVVELDYPVDISEV Sbjct: 181 PVYTVTHGDIDLGLLFNTNGFMLEENVVSTKPRFHFIADKQNDISSIVVELDYPVDISEV 240 Query: 241 SRVMENLLLESADKLLRYKGMLWIDGEPNRLLFQGVQRLYSADWDRPWGDEKPHSTMVFI 300 SRVMENLLLESADKLLRYKGMLWIDGEPNRLLFQGVQRLYSADWDRPWGDEKPHSTMVFI Sbjct: 241 SRVMENLLLESADKLLRYKGMLWIDGEPNRLLFQGVQRLYSADWDRPWGDEKPHSTMVFI 300 Query: 301 GIQLPEEEIRAAFAGLRK 318 GIQLPEEEIRAAFAGLRK Sbjct: 301 GIQLPEEEIRAAFAGLRK 318 >2J28-9 nrPDB Length = 430 Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust. Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%) Query: 3 PIAVTLLTGFLGAGKTT---LLRHILNEQHGYKIAVI 36 P AV L+ G GAGKTT L L E+H K+ V+ Sbjct: 98 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVV 134 >5GAF-i nrPDB Length = 398 Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust. Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%) Query: 3 PIAVTLLTGFLGAGKTT---LLRHILNEQHGYKIAVI 36 P AV L+ G GAGKTT L L E+H K+ V+ Sbjct: 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVV 135 >5GAD-i nrPDB Length = 450 Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust. Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%) Query: 3 PIAVTLLTGFLGAGKTT---LLRHILNEQHGYKIAVI 36 P AV L+ G GAGKTT L L E+H K+ V+ Sbjct: 96 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVV 132 >1POY-1 nrPDB Length = 323 Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust. Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 2/72 (2%) Query: 136 DEQMNQFTIAQSQVGYADRILLTKTDVAG--EAEKLHERLARINARAPVYTVTHGDIDLG 193 D+ F +A ++GY+ K A E +KL +A N+ P G+++LG Sbjct: 142 DDAREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPYMEGEVNLG 201 Query: 194 LLFNTNGFMLEE 205 +++N + F+ + Sbjct: 202 MIWNGSAFVARQ 213 >4C7O-A nrPDB Length = 298 Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust. Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%) Query: 3 PIAVTLLTGFLGAGKTT---LLRHILNEQHGYKIAVI 36 P AV L+ G GAGKTT L L E+H K+ V+ Sbjct: 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVV 135 >6HE9-H nrPDB Length = 390 Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 17/120 (14%) Query: 1 MNPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDD---------QLIG 51 + P LL G G GKT L + + N+ I V+ +EF + + + QL Sbjct: 164 IEPPKGVLLYGPPGTGKTLLAKAVANQTRATFIRVVGSEFVQKYIGEGARLVREVFQLAK 223 Query: 52 DRATQIKTLTN-GCICCSRSN-------ELEDALLDLLDNLDKGNIQFDRLVIECTGMAD 103 ++A I + I R+N E++ ++ LL LD + + D VI T D Sbjct: 224 EKAPSIIFIDELDAIAARRTNSDTSGDREVQRTMMQLLAELDGFDPRGDVKVIGATNRID 283 >2YVU-A nrPDB Length = 186 Score = 30.8 bits (68), Expect = 0.71, Method: Compositional matrix adjust. Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 2/44 (4%) Query: 6 VTLLTGFLGAGKTTLLRHI--LNEQHGYKIAVIENEFGEVSVDD 47 V LTG G+GKTT+ + L ++ GY++ V++ ++ +V + Sbjct: 15 VVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSE 58 >6HE4-H nrPDB Length = 267 Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 17/120 (14%) Query: 1 MNPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDD---------QLIG 51 + P LL G G GKT L + + N+ I V+ +EF + + + QL Sbjct: 50 IEPPKGVLLYGPPGTGKTLLAKAVANQTRATFIRVVGSEFVQKYIGEGARLVREVFQLAK 109 Query: 52 DRATQIKTLTN-GCICCSRSN-------ELEDALLDLLDNLDKGNIQFDRLVIECTGMAD 103 ++A I + I R+N E++ ++ LL LD + + D VI T D Sbjct: 110 EKAPSIIFIDELDAIAARRTNSDTSGDREVQRTMMQLLAELDGFDPRGDVKVIGATNRID 169 >4WZY-A nrPDB Length = 454 Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust. Identities = 14/41 (34%), Positives = 22/41 (53%) Query: 158 TKTDVAGEAEKLHERLARINARAPVYTVTHGDIDLGLLFNT 198 + ++AG A + ER R++ RA HGD+ LG + T Sbjct: 274 SAPELAGRAAAVEERYRRLDGRAITVQRVHGDLHLGQVLRT 314 >1IXK-A nrPDB Length = 315 Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 48 QLIGDRATQI-KTLTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRL 94 QL G+RA +I + + C R N L+ ++ DL+ L+K QF R+ Sbjct: 26 QLWGERAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRV 73 >1ZU4-A nrPDB Length = 320 Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 8/103 (7%) Query: 2 NPIAVTLLTGFLGAGKTTLLRHILN--EQHGYKIAVIENEFGEVSVDDQLIGDRATQIKT 59 N + + +L G G GKTT L + N + GYK+ + + QL IKT Sbjct: 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQL----EEWIKT 158 Query: 60 LTNGCICCSRSNELE-DALLDLLDNLDKGNIQ-FDRLVIECTG 100 N + ++N+L D + D + K Q +D L+I+ G Sbjct: 159 RLNNKVDLVKANKLNADPASVVFDAIKKAKEQNYDLLLIDTAG 201 >4AIP-A nrPDB Length = 742 Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust. Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 17/101 (16%) Query: 125 GVIALVDAVHADEQMNQFTIAQSQVGY----------ADRILLTKTDVAGEAEKLHERLA 174 G+I++ D A+ N +++G+ T D + H+ +A Sbjct: 521 GIISIADGTKAERARN------TEIGFNYNDGTFAANGSYFWQTIKDALANPQNRHDSVA 574 Query: 175 RINARAPVYTVTHGDIDLGLLFNTNGFMLEENVVSTKPRFH 215 A Y HG +LG + T G + V +KPRF+ Sbjct: 575 VREAVNAGYIKNHG-YELGASYRTGGLTAKVGVSHSKPRFY 614 >4M1U-A nrPDB Length = 297 Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 6/48 (12%) Query: 152 ADRILLTKTDVAGEAEKLHE-----RLARINARAPVYTVTHGDIDLGL 194 A R +L V EA + + R A ++ APVYT+T GD+DL L Sbjct: 154 ASRAVLRFVTVTAEALRFRQIQREFRQA-LSETAPVYTMTPGDVDLTL 200 >3H76-A nrPDB Length = 359 Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 31/80 (38%), Gaps = 10/80 (12%) Query: 41 GEVSVDDQLIGDRATQIKTLTN---GCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIE 97 GEV DR + L G + S LED LLDL D GN FD L+ Sbjct: 162 GEVLSKRMDCSDRGRNLSILLGDGAGAVVVSAGESLEDGLLDLRLGAD-GNY-FDLLMTA 219 Query: 98 CTGMADPGPIIQTFFSHEVL 117 G A P TF VL Sbjct: 220 APGSASP-----TFLDENVL 234 >1K6M-A nrPDB Length = 432 Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%) Query: 27 EQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDAL 77 ++HGYK+ IE+ + D +I + Q+K + I C R LED L Sbjct: 109 KEHGYKVFFIES----ICNDPGIIAENIRQVKLGSPDYIDCDREKVLEDFL 155 >2QEN-A nrPDB Length = 350 Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust. Identities = 13/25 (52%), Positives = 17/25 (68%) Query: 6 VTLLTGFLGAGKTTLLRHILNEQHG 30 +TLL G GK++LLR LNE+ G Sbjct: 33 LTLLLGIRRVGKSSLLRAFLNERPG 57 >5XNX-A nrPDB Length = 394 Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%) Query: 2 NPIAVTLLTGFLGAGKTTLLRHILN---EQHGYKIAVIENEFGE 42 +P+AV + LG TTL+ +L+ E GY + + EFGE Sbjct: 56 HPLAVANILAELGMDTTTLVAALLHDTVEDTGYTLEALTEEFGE 99 >6HQA-K nrPDB Length = 609 Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust. Identities = 16/55 (29%), Positives = 28/55 (50%) Query: 208 VSTKPRFHFIADKQNDISSIVVELDYPVDISEVSRVMENLLLESADKLLRYKGML 262 V T+PR + + SI+ E + + E ++ +NL E+ KLLR + +L Sbjct: 212 VGTQPRGQVTIQQFQQVKSILEEFEKKLRTIEAAKRDQNLPEETLQKLLRQEAIL 266 >3E70-C nrPDB Length = 328 Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust. Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%) Query: 6 VTLLTGFLGAGKTTLLRHILN--EQHGYKIAV 35 V + GF G+GKTT + + N + HG+ + + Sbjct: 131 VIMFVGFNGSGKTTTIAKLANWLKNHGFSVVI 162 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 4IXM-A nrPDB 669 0.0 Sequences not found previously or not previously below threshold: 4WZY-A nrPDB 32 0.47 1ZU4-A nrPDB 31 0.79 2YVU-A nrPDB 30 1.0 1POY-1 nrPDB 30 1.0 5GAF-i nrPDB 30 1.3 5GAD-i nrPDB 30 1.3 4C7O-A nrPDB 30 1.3 2J28-9 nrPDB 30 1.3 1K6M-A nrPDB 29 3.1 4BJT-A nrPDB 29 3.1 4M1U-A nrPDB 29 3.2 1IXK-A nrPDB 29 3.5 5XNX-A nrPDB 29 3.6 3H76-A nrPDB 28 4.1 6HQA-K nrPDB 28 4.2 6HE9-H nrPDB 28 5.4 6HE4-H nrPDB 28 5.4 2P0L-A nrPDB 28 5.7 4AIP-A nrPDB 28 5.8 2QEN-A nrPDB 28 6.6 2GJ9-A nrPDB 28 7.0 2B5Y-A nrPDB 28 7.3 1J0H-A nrPDB 27 8.3 CONVERGED! >4IXM-A nrPDB Length = 318 Score = 669 bits (1725), Expect = 0.0, Method: Composition-based stats. Identities = 318/318 (100%), Positives = 318/318 (100%) Query: 1 MNPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTL 60 MNPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTL Sbjct: 1 MNPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTL 60 Query: 61 TNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQR 120 TNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQR Sbjct: 61 TNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQR 120 Query: 121 YLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVAGEAEKLHERLARINARA 180 YLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVAGEAEKLHERLARINARA Sbjct: 121 YLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVAGEAEKLHERLARINARA 180 Query: 181 PVYTVTHGDIDLGLLFNTNGFMLEENVVSTKPRFHFIADKQNDISSIVVELDYPVDISEV 240 PVYTVTHGDIDLGLLFNTNGFMLEENVVSTKPRFHFIADKQNDISSIVVELDYPVDISEV Sbjct: 181 PVYTVTHGDIDLGLLFNTNGFMLEENVVSTKPRFHFIADKQNDISSIVVELDYPVDISEV 240 Query: 241 SRVMENLLLESADKLLRYKGMLWIDGEPNRLLFQGVQRLYSADWDRPWGDEKPHSTMVFI 300 SRVMENLLLESADKLLRYKGMLWIDGEPNRLLFQGVQRLYSADWDRPWGDEKPHSTMVFI Sbjct: 241 SRVMENLLLESADKLLRYKGMLWIDGEPNRLLFQGVQRLYSADWDRPWGDEKPHSTMVFI 300 Query: 301 GIQLPEEEIRAAFAGLRK 318 GIQLPEEEIRAAFAGLRK Sbjct: 301 GIQLPEEEIRAAFAGLRK 318 >4WZY-A nrPDB Length = 454 Score = 31.5 bits (70), Expect = 0.47, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 21/38 (55%) Query: 161 DVAGEAEKLHERLARINARAPVYTVTHGDIDLGLLFNT 198 ++AG A + ER R++ RA HGD+ LG + T Sbjct: 277 ELAGRAAAVEERYRRLDGRAITVQRVHGDLHLGQVLRT 314 >1ZU4-A nrPDB Length = 320 Score = 30.7 bits (68), Expect = 0.79, Method: Composition-based stats. Identities = 59/231 (25%), Positives = 92/231 (39%), Gaps = 40/231 (17%) Query: 2 NPIAVTLLTGFLGAGKTTLLRHILN--EQHGYKIAVIENEFGEVSVDDQLIGDRATQIKT 59 N + + +L G G GKTT L + N + GYK+ + + QL IKT Sbjct: 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQL----EEWIKT 158 Query: 60 LTNGCICCSRSNELE-DALLDLLDNLDKGNIQ-FDRLVIECTG--------MAD---PGP 106 N + ++N+L D + D + K Q +D L+I+ G MA+ Sbjct: 159 RLNNKVDLVKANKLNADPASVVFDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNK 218 Query: 107 IIQTF---FSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVA 163 IIQ HEVL ++D + A+E S+V I+LTK D Sbjct: 219 IIQQVEKSAPHEVL---LVIDATTGQNGVIQAEE--------FSKVADVSGIILTKMDST 267 Query: 164 GEA-------EKLHERLARINARAPVYTVTHGDIDLGLLFNTNGFMLEENV 207 + E L+ + I V + DID ++ ++GFM + V Sbjct: 268 SKGGIGLAIKELLNIPIKMIGVGEKVDDLLAFDIDQYIVHLSSGFMQGDEV 318 >2YVU-A nrPDB Length = 186 Score = 30.4 bits (67), Expect = 1.0, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 2/44 (4%) Query: 6 VTLLTGFLGAGKTTLLRHI--LNEQHGYKIAVIENEFGEVSVDD 47 V LTG G+GKTT+ + L ++ GY++ V++ ++ +V + Sbjct: 15 VVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSE 58 >1POY-1 nrPDB Length = 323 Score = 30.4 bits (67), Expect = 1.0, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 2/72 (2%) Query: 136 DEQMNQFTIAQSQVGYADRILLTKTDVAG--EAEKLHERLARINARAPVYTVTHGDIDLG 193 D+ F +A ++GY+ K A E +KL +A N+ P G+++LG Sbjct: 142 DDAREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPYMEGEVNLG 201 Query: 194 LLFNTNGFMLEE 205 +++N + F+ + Sbjct: 202 MIWNGSAFVARQ 213 >5GAF-i nrPDB Length = 398 Score = 30.0 bits (66), Expect = 1.3, Method: Composition-based stats. Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%) Query: 3 PIAVTLLTGFLGAGKTT---LLRHILNEQHGYKIAVI 36 P AV L+ G GAGKTT L L E+H K+ V+ Sbjct: 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVV 135 >5GAD-i nrPDB Length = 450 Score = 30.0 bits (66), Expect = 1.3, Method: Composition-based stats. Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%) Query: 3 PIAVTLLTGFLGAGKTT---LLRHILNEQHGYKIAVI 36 P AV L+ G GAGKTT L L E+H K+ V+ Sbjct: 96 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVV 132 >4C7O-A nrPDB Length = 298 Score = 30.0 bits (66), Expect = 1.3, Method: Composition-based stats. Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%) Query: 3 PIAVTLLTGFLGAGKTT---LLRHILNEQHGYKIAVI 36 P AV L+ G GAGKTT L L E+H K+ V+ Sbjct: 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVV 135 >2J28-9 nrPDB Length = 430 Score = 30.0 bits (66), Expect = 1.3, Method: Composition-based stats. Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%) Query: 3 PIAVTLLTGFLGAGKTT---LLRHILNEQHGYKIAVI 36 P AV L+ G GAGKTT L L E+H K+ V+ Sbjct: 98 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVV 134 >1K6M-A nrPDB Length = 432 Score = 28.8 bits (63), Expect = 3.1, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%) Query: 27 EQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDAL 77 ++HGYK+ IE+ + D +I + Q+K + I C R LED L Sbjct: 109 KEHGYKVFFIES----ICNDPGIIAENIRQVKLGSPDYIDCDREKVLEDFL 155 >4BJT-A nrPDB Length = 202 Score = 28.8 bits (63), Expect = 3.1, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%) Query: 198 TNGFMLEENVVSTKPRFHFIADKQNDISSIVVEL--DYPVDISEVSR 242 +N + + EN + + +FI+ +ND+S+I L +YP +I+E R Sbjct: 3 SNSYAIPENELLDEDTMNFISSLKNDLSNISNSLPFEYPHEIAEAIR 49 >4M1U-A nrPDB Length = 297 Score = 28.8 bits (63), Expect = 3.2, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 4/47 (8%) Query: 152 ADRILLTKTDVAGEAEKLH----ERLARINARAPVYTVTHGDIDLGL 194 A R +L V EA + E ++ APVYT+T GD+DL L Sbjct: 154 ASRAVLRFVTVTAEALRFRQIQREFRQALSETAPVYTMTPGDVDLTL 200 >1IXK-A nrPDB Length = 315 Score = 28.8 bits (63), Expect = 3.5, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 48 QLIGDRATQI-KTLTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRL 94 QL G+RA +I + + C R N L+ ++ DL+ L+K QF R+ Sbjct: 26 QLWGERAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRV 73 >5XNX-A nrPDB Length = 394 Score = 28.8 bits (63), Expect = 3.6, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%) Query: 2 NPIAVTLLTGFLGAGKTTLLRHILN---EQHGYKIAVIENEFGE 42 +P+AV + LG TTL+ +L+ E GY + + EFGE Sbjct: 56 HPLAVANILAELGMDTTTLVAALLHDTVEDTGYTLEALTEEFGE 99 >3H76-A nrPDB Length = 359 Score = 28.4 bits (62), Expect = 4.1, Method: Composition-based stats. Identities = 28/80 (35%), Positives = 31/80 (38%), Gaps = 10/80 (12%) Query: 41 GEVSVDDQLIGDRATQIKTLTN---GCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIE 97 GEV DR + L G + S LED LLDL D GN FD L+ Sbjct: 162 GEVLSKRMDCSDRGRNLSILLGDGAGAVVVSAGESLEDGLLDLRLGAD-GNY-FDLLMTA 219 Query: 98 CTGMADPGPIIQTFFSHEVL 117 G A P TF VL Sbjct: 220 APGSASP-----TFLDENVL 234 >6HQA-K nrPDB Length = 609 Score = 28.4 bits (62), Expect = 4.2, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 28/55 (50%) Query: 208 VSTKPRFHFIADKQNDISSIVVELDYPVDISEVSRVMENLLLESADKLLRYKGML 262 V T+PR + + SI+ E + + E ++ +NL E+ KLLR + +L Sbjct: 212 VGTQPRGQVTIQQFQQVKSILEEFEKKLRTIEAAKRDQNLPEETLQKLLRQEAIL 266 >6HE9-H nrPDB Length = 390 Score = 28.1 bits (61), Expect = 5.4, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 17/120 (14%) Query: 1 MNPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDD---------QLIG 51 + P LL G G GKT L + + N+ I V+ +EF + + + QL Sbjct: 164 IEPPKGVLLYGPPGTGKTLLAKAVANQTRATFIRVVGSEFVQKYIGEGARLVREVFQLAK 223 Query: 52 DRATQIKTLTN-GCICCSRSN-------ELEDALLDLLDNLDKGNIQFDRLVIECTGMAD 103 ++A I + I R+N E++ ++ LL LD + + D VI T D Sbjct: 224 EKAPSIIFIDELDAIAARRTNSDTSGDREVQRTMMQLLAELDGFDPRGDVKVIGATNRID 283 >6HE4-H nrPDB Length = 267 Score = 28.1 bits (61), Expect = 5.4, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 17/120 (14%) Query: 1 MNPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDD---------QLIG 51 + P LL G G GKT L + + N+ I V+ +EF + + + QL Sbjct: 50 IEPPKGVLLYGPPGTGKTLLAKAVANQTRATFIRVVGSEFVQKYIGEGARLVREVFQLAK 109 Query: 52 DRATQIKTLTN-GCICCSRSN-------ELEDALLDLLDNLDKGNIQFDRLVIECTGMAD 103 ++A I + I R+N E++ ++ LL LD + + D VI T D Sbjct: 110 EKAPSIIFIDELDAIAARRTNSDTSGDREVQRTMMQLLAELDGFDPRGDVKVIGATNRID 169 >2P0L-A nrPDB Length = 288 Score = 28.1 bits (61), Expect = 5.7, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 8/75 (10%) Query: 100 GMADPG-PIIQTFFSHEVLCQRY-LLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILL 157 G+ D G PI E++ LLD + + D + ++ I+ QVG+ DR+L+ Sbjct: 200 GLGDTGSPIAYPNVDPEIMANLSDLLDCPMTVEDVI------DRMLISLKQVGFNDRLLM 253 Query: 158 TKTDVAGEAEKLHER 172 + D+ E ++ + Sbjct: 254 IRPDLVAEFDRFQAK 268 >4AIP-A nrPDB Length = 742 Score = 28.1 bits (61), Expect = 5.8, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 17/101 (16%) Query: 125 GVIALVDAVHADEQMNQFTIAQSQVGY----------ADRILLTKTDVAGEAEKLHERLA 174 G+I++ D A+ N +++G+ T D + H+ +A Sbjct: 521 GIISIADGTKAERARN------TEIGFNYNDGTFAANGSYFWQTIKDALANPQNRHDSVA 574 Query: 175 RINARAPVYTVTHGDIDLGLLFNTNGFMLEENVVSTKPRFH 215 A Y HG +LG + T G + V +KPRF+ Sbjct: 575 VREAVNAGYIKNHG-YELGASYRTGGLTAKVGVSHSKPRFY 614 >2QEN-A nrPDB Length = 350 Score = 27.7 bits (60), Expect = 6.6, Method: Composition-based stats. Identities = 14/28 (50%), Positives = 18/28 (64%) Query: 6 VTLLTGFLGAGKTTLLRHILNEQHGYKI 33 +TLL G GK++LLR LNE+ G I Sbjct: 33 LTLLLGIRRVGKSSLLRAFLNERPGILI 60 >2GJ9-A nrPDB Length = 172 Score = 27.7 bits (60), Expect = 7.0, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 10/83 (12%) Query: 113 SHEVLCQRYLLDGV-IALVDAV---HADEQMNQFTI--AQSQVGYADRILL----TKTDV 162 + +VL + +DG+ + ++D A +++ + I A ++ ADR+L T TD Sbjct: 39 TRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDA 98 Query: 163 AGEAEKLHERLARINARAPVYTV 185 AE E +AR+ A+ P+ V Sbjct: 99 VDPAEIWPEFIARLPAKLPITVV 121 >2B5Y-A nrPDB Length = 148 Score = 27.7 bits (60), Expect = 7.3, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 13/96 (13%) Query: 41 GEVSVDDQLIGDRATQIKTLTNGCICCSRS----NELEDALLDLLDNLDKGNIQFDRLVI 96 GEV+ +QLIG++ T I + C C + NE D D L+ + + R Sbjct: 19 GEVT-REQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVV---AVHMPR--- 71 Query: 97 ECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDA 132 DPG I +T H++ Q +D AL DA Sbjct: 72 -SEDDLDPGKIKETAAEHDI-TQPIFVDSDHALTDA 105 >1J0H-A nrPDB Length = 588 Score = 27.3 bits (59), Expect = 8.3, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 39/105 (37%), Gaps = 19/105 (18%) Query: 200 GFML---EENVVSTKPRFHFIADKQNDISSIVVELDYPVDISEVSRVMENLLLESADKLL 256 GF+L EE +V T+ F+F + + VD L E+ D + Sbjct: 85 GFVLYSGEEKLVYTEKGFYFEVPTDDTAYYFCFPFLHRVD-----------LFEAPDWV- 132 Query: 257 RYKGMLWIDGEPNRLLFQGVQRLYSADWDRPWGDEKPHSTMVFIG 301 K +W P R F S + RPWG E P T F G Sbjct: 133 --KDTVWYQIFPER--FANGNPSISPEGSRPWGSEDPTPTSFFGG 173 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.321 0.139 0.408 Lambda K H 0.267 0.0455 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,385,443 Number of Sequences: 36641 Number of extensions: 658324 Number of successful extensions: 1768 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 41 Number of HSP's that attempted gapping in prelim test: 1752 Number of HSP's gapped (non-prelim): 54 length of query: 318 length of database: 10,336,785 effective HSP length: 97 effective length of query: 221 effective length of database: 6,782,608 effective search space: 1498956368 effective search space used: 1498956368 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 59 (27.2 bits)