BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= P23930
         (512 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

5N6H-A nrPDB                                                         1034   0.0  
5N6M-A nrPDB                                                          275   4e-74
3CJP-A nrPDB                                                           32   0.48 
2DTU-A nrPDB                                                           32   0.95 
1MX5-A nrPDB                                                           30   1.8  
5FV4-A nrPDB                                                           30   1.9  
2E11-A nrPDB                                                           30   2.7  
1K4Y-A nrPDB                                                           30   3.0  
5V0T-A nrPDB                                                           29   6.3  
6QAA-A nrPDB                                                           28   6.7  

>5N6H-A nrPDB
          Length = 532

 Score = 1034 bits (2673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/512 (100%), Positives = 512/512 (100%)

Query: 1   MAFASLIERQRIRLLLALLFGACGTLAFSPYDVWPAAIISLMGLQALTFNRRPLQSAAIG 60
           MAFASLIERQRIRLLLALLFGACGTLAFSPYDVWPAAIISLMGLQALTFNRRPLQSAAIG
Sbjct: 21  MAFASLIERQRIRLLLALLFGACGTLAFSPYDVWPAAIISLMGLQALTFNRRPLQSAAIG 80

Query: 61  FCWGFGLFGSGINWVYVSIATFGGMPGPVNIFLVVLLAAYLSLYTGLFAGVLSRLWPKTT 120
           FCWGFGLFGSGINWVYVSIATFGGMPGPVNIFLVVLLAAYLSLYTGLFAGVLSRLWPKTT
Sbjct: 81  FCWGFGLFGSGINWVYVSIATFGGMPGPVNIFLVVLLAAYLSLYTGLFAGVLSRLWPKTT 140

Query: 121 WLRVAIAAPALWQVTEFLRGWVLTGFPWLQFGYSQIDGPLKGLAPIMGVEAINFLLMMVS 180
           WLRVAIAAPALWQVTEFLRGWVLTGFPWLQFGYSQIDGPLKGLAPIMGVEAINFLLMMVS
Sbjct: 141 WLRVAIAAPALWQVTEFLRGWVLTGFPWLQFGYSQIDGPLKGLAPIMGVEAINFLLMMVS 200

Query: 181 GLLALALVKRNWRPLVVAVVLFALPFPLRYIQWFTPQPEKTIQVSMVQGDIPQSLKWDEG 240
           GLLALALVKRNWRPLVVAVVLFALPFPLRYIQWFTPQPEKTIQVSMVQGDIPQSLKWDEG
Sbjct: 201 GLLALALVKRNWRPLVVAVVLFALPFPLRYIQWFTPQPEKTIQVSMVQGDIPQSLKWDEG 260

Query: 241 QLLNTLKIYYNATAPLMGKSSLIIWPESAITDLEINQQPFLKALDGELRDKGSSLVTGIV 300
           QLLNTLKIYYNATAPLMGKSSLIIWPESAITDLEINQQPFLKALDGELRDKGSSLVTGIV
Sbjct: 261 QLLNTLKIYYNATAPLMGKSSLIIWPESAITDLEINQQPFLKALDGELRDKGSSLVTGIV 320

Query: 301 DARLNKQNRYDTYNTIITLGKGAPYSYESADRYNKNHLVPFGEFVPLESILRPLAPFFDL 360
           DARLNKQNRYDTYNTIITLGKGAPYSYESADRYNKNHLVPFGEFVPLESILRPLAPFFDL
Sbjct: 321 DARLNKQNRYDTYNTIITLGKGAPYSYESADRYNKNHLVPFGEFVPLESILRPLAPFFDL 380

Query: 361 PMSSFSRGPYIQPPLSANGIELTAAICYEIILGEQVRDNFRPDTDYLLTISNDAWFGKSI 420
           PMSSFSRGPYIQPPLSANGIELTAAICYEIILGEQVRDNFRPDTDYLLTISNDAWFGKSI
Sbjct: 381 PMSSFSRGPYIQPPLSANGIELTAAICYEIILGEQVRDNFRPDTDYLLTISNDAWFGKSI 440

Query: 421 GPWQHFQMARMRALELARPLLRSTNNGITAVIGPQGEIQAMIPQFTREVLTTNVTPTTGL 480
           GPWQHFQMARMRALELARPLLRSTNNGITAVIGPQGEIQAMIPQFTREVLTTNVTPTTGL
Sbjct: 441 GPWQHFQMARMRALELARPLLRSTNNGITAVIGPQGEIQAMIPQFTREVLTTNVTPTTGL 500

Query: 481 TPYARTGNWPLWVLTALFGFAAVLMSLRQRRK 512
           TPYARTGNWPLWVLTALFGFAAVLMSLRQRRK
Sbjct: 501 TPYARTGNWPLWVLTALFGFAAVLMSLRQRRK 532


>5N6M-A nrPDB
          Length = 531

 Score =  275 bits (703), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 189/470 (40%), Positives = 268/470 (57%), Gaps = 22/470 (4%)

Query: 30  PYDVWPAAIISLMGLQALTFNRRPLQSAAI-GFCWGFGLFGSGINWVYVSIATFGGMPGP 88
           P+D WP AI+S+  L  L     P +SA   G+ +GFG FG+G +W+YVSI  +G    P
Sbjct: 48  PFDYWPLAILSI-ALLYLGLRGLPGKSALWRGWWYGFGAFGAGTSWIYVSIHDYGAASVP 106

Query: 89  VNIFLVVLLAAYLSLYTGLFAGVLSRLWPKTTW-LRVAIAAPALWQVTEFLRGWVLTGFP 147
           +   L++   A ++ +  L A + +R   +    L  A+A  ALW   E  R W LTGFP
Sbjct: 107 LASLLMLGFTAGVAFFFALPAWLWARCLRRDNAPLGDALAFAALWLALELFRSWFLTGFP 166

Query: 148 WLQFGYSQIDGPLKGLAPIMGVEAINFLLMMVSGLLA-LALVKRNWRPLVVAVVLFALPF 206
           WL  GYSQ+ GPL GL P+ GV   +F++ + + LL  L  +  +   L++ +VL   P+
Sbjct: 167 WLYAGYSQLQGPLAGLVPVGGVWLSSFVIALSAALLVNLPRLFPHGASLLLGLVLLLGPW 226

Query: 207 P----LRYIQWFTPQPEKTIQVSMVQGDIPQSLKWDEGQLLNTLKIYYNATAPLMGKSSL 262
                L+   W T    + ++V  +QG+I Q LKWD  Q+   L +Y + + P      L
Sbjct: 227 AAGLYLKGHAW-THSAGEPLRVVAIQGNIAQELKWDPNQVRAQLDLYRDLSLPQQ-DVDL 284

Query: 263 IIWPESAITDLEINQQPFLKALDGELRDKGSSLVTGI-VDARL-NKQNRYDTYNTIITLG 320
           I+WPE+A+  L+     +L A+     +K ++L+TG+ V  RL + ++RY  +N I  +G
Sbjct: 285 IVWPETAVPILQDMASGYLGAMGQVADEKNAALITGVPVRERLADGKSRY--FNGITVVG 342

Query: 321 KGAPYSYESADRYNKNHLVPFGEFVPLESILRPLAPFFDLPMSSFSRGPYIQPPLSANGI 380
           +GA         Y K  LVPFGE+VPL+ +LR L  FFDLPMS F+RGP  QP L A G 
Sbjct: 343 EGA-------GTYLKQKLVPFGEYVPLQDLLRGLIAFFDLPMSDFARGPADQPLLKAKGY 395

Query: 381 ELTAAICYEIILGEQVRDNFRPDTDYLLTISNDAWFGKSIGPWQHFQMARMRALELARPL 440
           ++   ICYE++  E         +  LLT+SND WFG SIGP QH QMA+MRALE  R +
Sbjct: 396 QIAPYICYEVVYPE-FAAALAAQSQVLLTVSNDTWFGTSIGPLQHLQMAQMRALESGRWM 454

Query: 441 LRSTNNGITAVIGPQGEIQAMIPQFTREVLTTNVTPTTGLTPYARTGNWP 490
           +R+TNNG+T +I P G I   IPQF + +L   V P  GLTPY +   WP
Sbjct: 455 IRATNNGVTGLIDPYGRIVRQIPQFQQGILRGEVIPMQGLTPYLQYRVWP 504


>3CJP-A nrPDB
          Length = 272

 Score = 32.3 bits (72), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 21/138 (15%)

Query: 264 IWPESAITDLEINQQPFLKALDGELRDKGSSLVTGIVDARLNK-----------QNRYDT 312
           I PE+A+   ++ ++  +K L+  +  K +S++    D R N             +RY  
Sbjct: 37  IHPETAVNLRDVKKE--MKKLNDVVNGKTNSMI----DVRRNSIKELTNVIQAYPSRYVG 90

Query: 313 YNTI-ITLGKGAPYSYESADRYNKNHLVPFGEFVPLESILRPLAPFFDLPMSSFSRGPYI 371
           +  + + L +    SY   +  N N LV  GE  P    ++ L P F   M S S   +I
Sbjct: 91  FGNVPVGLSENDTNSYIEENIVN-NKLVGIGELTPASGQIKSLKPIFKYSMDSGSLPIWI 149

Query: 372 QP--PLSANGIELTAAIC 387
               PL    I+  A +C
Sbjct: 150 HAFNPLVLQDIKEIAELC 167


>2DTU-A nrPDB
          Length = 896

 Score = 31.6 bits (70), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 5/70 (7%)

Query: 13  RLLLALLFGACGTLAFSPYDVWPAAIISLMGLQALTFNRRPLQSAAIGFC----WGFGLF 68
           +LL+  L+GA G + F  YD+  A  I+  G  AL +  R +       C      F L+
Sbjct: 553 KLLINSLYGALGNVWFRYYDLRNATAITTFGQMALQWIERKVNEYLNEVCGTEGEAFVLY 612

Query: 69  GSGINWVYVS 78
           G   + +YVS
Sbjct: 613 GD-TDSIYVS 621


>1MX5-A nrPDB
          Length = 548

 Score = 30.4 bits (67), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 63  WGFGLFGSGINWVYVSIATFGGMPGPVNIF 92
           WG     + + WV  +IA+FGG PG V IF
Sbjct: 171 WGHLDQVAALRWVQDNIASFGGNPGSVTIF 200


>5FV4-A nrPDB
          Length = 544

 Score = 30.4 bits (67), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 63  WGFGLFGSGINWVYVSIATFGGMPGPVNIF 92
           WG     + ++WV  +IA FGG PG V IF
Sbjct: 172 WGHLDQVAALHWVQENIANFGGDPGSVTIF 201


>2E11-A nrPDB
          Length = 266

 Score = 30.0 bits (66), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 24/131 (18%)

Query: 220 KTIQVSMVQGDIPQSLKWDEGQLLNTLKIYYNAT-APLMGKSSLIIWPESAITDLEINQQ 278
             +++S+VQG    S +W +       + YY A   PL G+S L+I PE+  +       
Sbjct: 2   HDLRISLVQG----STRWHDPA---GNRDYYGALLEPLAGQSDLVILPETFTSGFSNEAI 54

Query: 279 PFLKALDGE----LRDKGSSL---VTGIVDARLNKQNRYDTYNTIITLGKGAPYSYESAD 331
              + +DG     +R + + L   +TG V  R      +  +N ++         Y    
Sbjct: 55  DKAEDMDGPTVAWIRTQAARLGAAITGSVQLR----TEHGVFNRLLWATPDGALQY---- 106

Query: 332 RYNKNHLVPFG 342
            Y+K HL  FG
Sbjct: 107 -YDKRHLFRFG 116


>1K4Y-A nrPDB
          Length = 534

 Score = 29.6 bits (65), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 63  WGFGLFGSGINWVYVSIATFGGMPGPVNIF 92
           WG     + + WV  +IA FGG PG V IF
Sbjct: 167 WGHLDQVAALRWVQDNIANFGGDPGSVTIF 196


>5V0T-A nrPDB
          Length = 494

 Score = 28.9 bits (63), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 5/86 (5%)

Query: 337 HLVPFGEFVPLESILRPLAPFFDLPMSSFSRGPYIQPPLSANGIELTAAICYEIILGEQV 396
           HL+PF + +    +   +  F  +P  + S+     PP      EL  A+C   +LG Q 
Sbjct: 142 HLIPFAQALRAAGVKNRIGFFLHIPFPA-SQVLLAVPPHR----ELVEALCSFDLLGFQT 196

Query: 397 RDNFRPDTDYLLTISNDAWFGKSIGP 422
             + R   DY++  +N      + GP
Sbjct: 197 APDLRAFCDYIVNEANGTADPSASGP 222


>6QAA-A nrPDB
          Length = 557

 Score = 28.5 bits (62), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 66  GLFGS--GINWVYVSIATFGGMPGPVNIFLVVLLAAYLSLY 104
           GLF     + WV  +IA FGG P  V +F     AA +SL+
Sbjct: 195 GLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLH 235


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

5N6H-A nrPDB                                                          842   0.0  
5N6M-A nrPDB                                                          615   e-176

Sequences not found previously or not previously below threshold:

2E11-A nrPDB                                                           40   0.003
5KHA-A nrPDB                                                           33   0.33 
1EMS-A nrPDB                                                           32   0.49 
3N05-A nrPDB                                                           32   0.77 
3CJP-A nrPDB                                                           32   0.83 
4GC0-A nrPDB                                                           30   1.7  
2EGH-A nrPDB                                                           30   2.0  
4Q0G-A nrPDB                                                           30   2.4  
5V0T-A nrPDB                                                           30   3.4  
3U1J-B nrPDB                                                           29   4.6  
5NYB-A nrPDB                                                           29   4.9  
6GCS-4 nrPDB                                                           28   7.8  
2X19-B nrPDB                                                           28   8.6  
2WQY-C nrPDB                                                           28   9.2  
6QAA-A nrPDB                                                           28   10.0 


CONVERGED!
>5N6H-A nrPDB
          Length = 532

 Score =  842 bits (2176), Expect = 0.0,   Method: Composition-based stats.
 Identities = 512/512 (100%), Positives = 512/512 (100%)

Query: 1   MAFASLIERQRIRLLLALLFGACGTLAFSPYDVWPAAIISLMGLQALTFNRRPLQSAAIG 60
           MAFASLIERQRIRLLLALLFGACGTLAFSPYDVWPAAIISLMGLQALTFNRRPLQSAAIG
Sbjct: 21  MAFASLIERQRIRLLLALLFGACGTLAFSPYDVWPAAIISLMGLQALTFNRRPLQSAAIG 80

Query: 61  FCWGFGLFGSGINWVYVSIATFGGMPGPVNIFLVVLLAAYLSLYTGLFAGVLSRLWPKTT 120
           FCWGFGLFGSGINWVYVSIATFGGMPGPVNIFLVVLLAAYLSLYTGLFAGVLSRLWPKTT
Sbjct: 81  FCWGFGLFGSGINWVYVSIATFGGMPGPVNIFLVVLLAAYLSLYTGLFAGVLSRLWPKTT 140

Query: 121 WLRVAIAAPALWQVTEFLRGWVLTGFPWLQFGYSQIDGPLKGLAPIMGVEAINFLLMMVS 180
           WLRVAIAAPALWQVTEFLRGWVLTGFPWLQFGYSQIDGPLKGLAPIMGVEAINFLLMMVS
Sbjct: 141 WLRVAIAAPALWQVTEFLRGWVLTGFPWLQFGYSQIDGPLKGLAPIMGVEAINFLLMMVS 200

Query: 181 GLLALALVKRNWRPLVVAVVLFALPFPLRYIQWFTPQPEKTIQVSMVQGDIPQSLKWDEG 240
           GLLALALVKRNWRPLVVAVVLFALPFPLRYIQWFTPQPEKTIQVSMVQGDIPQSLKWDEG
Sbjct: 201 GLLALALVKRNWRPLVVAVVLFALPFPLRYIQWFTPQPEKTIQVSMVQGDIPQSLKWDEG 260

Query: 241 QLLNTLKIYYNATAPLMGKSSLIIWPESAITDLEINQQPFLKALDGELRDKGSSLVTGIV 300
           QLLNTLKIYYNATAPLMGKSSLIIWPESAITDLEINQQPFLKALDGELRDKGSSLVTGIV
Sbjct: 261 QLLNTLKIYYNATAPLMGKSSLIIWPESAITDLEINQQPFLKALDGELRDKGSSLVTGIV 320

Query: 301 DARLNKQNRYDTYNTIITLGKGAPYSYESADRYNKNHLVPFGEFVPLESILRPLAPFFDL 360
           DARLNKQNRYDTYNTIITLGKGAPYSYESADRYNKNHLVPFGEFVPLESILRPLAPFFDL
Sbjct: 321 DARLNKQNRYDTYNTIITLGKGAPYSYESADRYNKNHLVPFGEFVPLESILRPLAPFFDL 380

Query: 361 PMSSFSRGPYIQPPLSANGIELTAAICYEIILGEQVRDNFRPDTDYLLTISNDAWFGKSI 420
           PMSSFSRGPYIQPPLSANGIELTAAICYEIILGEQVRDNFRPDTDYLLTISNDAWFGKSI
Sbjct: 381 PMSSFSRGPYIQPPLSANGIELTAAICYEIILGEQVRDNFRPDTDYLLTISNDAWFGKSI 440

Query: 421 GPWQHFQMARMRALELARPLLRSTNNGITAVIGPQGEIQAMIPQFTREVLTTNVTPTTGL 480
           GPWQHFQMARMRALELARPLLRSTNNGITAVIGPQGEIQAMIPQFTREVLTTNVTPTTGL
Sbjct: 441 GPWQHFQMARMRALELARPLLRSTNNGITAVIGPQGEIQAMIPQFTREVLTTNVTPTTGL 500

Query: 481 TPYARTGNWPLWVLTALFGFAAVLMSLRQRRK 512
           TPYARTGNWPLWVLTALFGFAAVLMSLRQRRK
Sbjct: 501 TPYARTGNWPLWVLTALFGFAAVLMSLRQRRK 532


>5N6M-A nrPDB
          Length = 531

 Score =  615 bits (1587), Expect = e-176,   Method: Composition-based stats.
 Identities = 189/470 (40%), Positives = 268/470 (57%), Gaps = 22/470 (4%)

Query: 30  PYDVWPAAIISLMGLQALTFNRRPLQSAAI-GFCWGFGLFGSGINWVYVSIATFGGMPGP 88
           P+D WP AI+S+  L  L     P +SA   G+ +GFG FG+G +W+YVSI  +G    P
Sbjct: 48  PFDYWPLAILSI-ALLYLGLRGLPGKSALWRGWWYGFGAFGAGTSWIYVSIHDYGAASVP 106

Query: 89  VNIFLVVLLAAYLSLYTGLFAGVLSRLWPKTTW-LRVAIAAPALWQVTEFLRGWVLTGFP 147
           +   L++   A ++ +  L A + +R   +    L  A+A  ALW   E  R W LTGFP
Sbjct: 107 LASLLMLGFTAGVAFFFALPAWLWARCLRRDNAPLGDALAFAALWLALELFRSWFLTGFP 166

Query: 148 WLQFGYSQIDGPLKGLAPIMGVEAINFLLMMVSGLLA-LALVKRNWRPLVVAVVLFALPF 206
           WL  GYSQ+ GPL GL P+ GV   +F++ + + LL  L  +  +   L++ +VL   P+
Sbjct: 167 WLYAGYSQLQGPLAGLVPVGGVWLSSFVIALSAALLVNLPRLFPHGASLLLGLVLLLGPW 226

Query: 207 P----LRYIQWFTPQPEKTIQVSMVQGDIPQSLKWDEGQLLNTLKIYYNATAPLMGKSSL 262
                L+   W T    + ++V  +QG+I Q LKWD  Q+   L +Y + + P      L
Sbjct: 227 AAGLYLKGHAW-THSAGEPLRVVAIQGNIAQELKWDPNQVRAQLDLYRDLSLPQQ-DVDL 284

Query: 263 IIWPESAITDLEINQQPFLKALDGELRDKGSSLVTGI-VDARL-NKQNRYDTYNTIITLG 320
           I+WPE+A+  L+     +L A+     +K ++L+TG+ V  RL + ++RY  +N I  +G
Sbjct: 285 IVWPETAVPILQDMASGYLGAMGQVADEKNAALITGVPVRERLADGKSRY--FNGITVVG 342

Query: 321 KGAPYSYESADRYNKNHLVPFGEFVPLESILRPLAPFFDLPMSSFSRGPYIQPPLSANGI 380
           +GA         Y K  LVPFGE+VPL+ +LR L  FFDLPMS F+RGP  QP L A G 
Sbjct: 343 EGA-------GTYLKQKLVPFGEYVPLQDLLRGLIAFFDLPMSDFARGPADQPLLKAKGY 395

Query: 381 ELTAAICYEIILGEQVRDNFRPDTDYLLTISNDAWFGKSIGPWQHFQMARMRALELARPL 440
           ++   ICYE++  E         +  LLT+SND WFG SIGP QH QMA+MRALE  R +
Sbjct: 396 QIAPYICYEVVYPE-FAAALAAQSQVLLTVSNDTWFGTSIGPLQHLQMAQMRALESGRWM 454

Query: 441 LRSTNNGITAVIGPQGEIQAMIPQFTREVLTTNVTPTTGLTPYARTGNWP 490
           +R+TNNG+T +I P G I   IPQF + +L   V P  GLTPY +   WP
Sbjct: 455 IRATNNGVTGLIDPYGRIVRQIPQFQQGILRGEVIPMQGLTPYLQYRVWP 504


>2E11-A nrPDB
          Length = 266

 Score = 40.0 bits (92), Expect = 0.003,   Method: Composition-based stats.
 Identities = 63/276 (22%), Positives = 102/276 (36%), Gaps = 64/276 (23%)

Query: 222 IQVSMVQGDIPQSLKW-DEGQLLNTLKIYYNATAPLMGKSSLIIWPES--------AITD 272
           +++S+VQG    S +W D          Y     PL G+S L+I PE+        AI  
Sbjct: 4   LRISLVQG----STRWHDPAGNR---DYYGALLEPLAGQSDLVILPETFTSGFSNEAIDK 56

Query: 273 LEINQQPFLKALDGELRDKGSSLVTGIVDARLNKQNRYDTYNTIITLGKGAPYSYESADR 332
            E    P +  +  +    G++ +TG V  R      +  +N ++         Y     
Sbjct: 57  AEDMDGPTVAWIRTQAARLGAA-ITGSVQLR----TEHGVFNRLLWATPDGALQY----- 106

Query: 333 YNKNHLVPFGEFVPLESILRPLAPFFDLPMSSFSRGPYIQPPLSANGIELTAAICYEIIL 392
           Y+K HL  FG        LR            ++ G   +  +   G  +   +CY++  
Sbjct: 107 YDKRHLFRFG-----NEHLR------------YAAG-RERLCVEWKGWRINPQVCYDLRF 148

Query: 393 GEQVRDNF---RP---DTDYLLTISNDAWFGKSIGPWQHFQMARMRALELARPLLRSTNN 446
               R+ F   RP   D D  L ++N  W       W+   + R RA+E    +      
Sbjct: 149 PVFCRNRFDVERPGQLDFDLQLFVAN--WPSARAYAWK--TLLRARAIENLCFVAAVNRV 204

Query: 447 GI----------TAVIGPQGEIQAMIPQFTREVLTT 472
           G+          +AVI   G+ Q  I +  + V TT
Sbjct: 205 GVDGNQLHYAGDSAVIDFLGQPQVEIREQEQVVTTT 240


>5KHA-A nrPDB
          Length = 549

 Score = 33.1 bits (74), Expect = 0.33,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 17/109 (15%)

Query: 244 NTLKIYYNATAPLMGKSSLIIWPESAI---TDLEINQQPFL-----KALDGELRDKGSSL 295
           NT K+   A       + LII+PE ++      ++  +P L     KA       K   +
Sbjct: 29  NTQKMIEQANQAKKQDADLIIFPELSVIGYPAEDLLLRPNLNKRMQKAFAQLSEVKDIVM 88

Query: 296 VTGIVDARLNKQNRYDTYNTIITLGKGAPYSYESADRYNKNHLVPFGEF 344
           V G V+   + Q     YN+   +  G     +    +NK++L  +G F
Sbjct: 89  VFGFVNQTEDGQ----RYNSAAVMKDG-----QVLGVFNKHNLPNYGVF 128


>1EMS-A nrPDB
          Length = 440

 Score = 32.3 bits (72), Expect = 0.49,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 14/110 (12%)

Query: 363 SSFSR-GPYIQPPLSANGIELTAAICYEIILGEQVRDNFRPDTDYLLTISNDAWFGKSIG 421
           S FS+ G  + PP+      L  +ICY++   E    N +     LL+  +       + 
Sbjct: 144 SEFSKAGTEMIPPVDTPIGRLGLSICYDVRFPELSLWNRKRGAQ-LLSFPSAFTLNTGLA 202

Query: 422 PWQHFQMARMRALELARPLLRSTNNGI----------TAVIGPQGEIQAM 461
            W+   + R RA+E    ++ +   G           + V+ P G + A 
Sbjct: 203 HWE--TLLRARAIENQCYVVAAAQTGAHNPKRQSYGHSMVVDPWGAVVAQ 250


>3N05-A nrPDB
          Length = 590

 Score = 31.9 bits (71), Expect = 0.77,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 85/231 (36%), Gaps = 42/231 (18%)

Query: 262 LIIWPESAIT--DLEINQ--QPFLKALDGELRDKGSSL----------VTGIVDARLNKQ 307
           L+ +PE A+T   +E       F++A    LR+  + L          + G +D   + Q
Sbjct: 40  LVAFPEMALTGYPVEDLALRSSFVEASRTALRELAARLAEEGFGELPVLVGYLDRSESAQ 99

Query: 308 NRYDTYNTIITLGKGAPYSYESADRYNKNHLVPFGEFVPLESILRPLAPFFDLPMSSFSR 367
            +Y              +    A  + K+HL  +G F       R   P   +P+     
Sbjct: 100 PKYGQPAGAPRNAAAVLHRGRVALTFAKHHLPNYGVF----DEFRYFVPGDTMPI----- 150

Query: 368 GPYIQPPLSANGIELTAAICYEIIL-GEQVRDNFRPDTDYLLTISNDAWFGKSIGPWQHF 426
                  +  +G+++  AIC ++   G +V          LL+++   +  +        
Sbjct: 151 -------VRLHGVDIALAICEDLWQDGGRVPAARSAGAGLLLSVNASPY--ERDKDDTRL 201

Query: 427 QMARMRALELA-----RPLLRSTN----NGITAVIGPQGEIQAMIPQFTRE 468
           ++ R RA E         ++   +    +G + V+   GE+ A  PQF+  
Sbjct: 202 ELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGEVVARAPQFSEG 252


>3CJP-A nrPDB
          Length = 272

 Score = 31.5 bits (70), Expect = 0.83,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 17/112 (15%)

Query: 264 IWPESAITDLEINQQPFLKALDGELRDKGSSLV----------TGIVDARLNKQNRYDTY 313
           I PE+A+   ++ ++  +K L+  +  K +S++          T ++ A     +RY  +
Sbjct: 37  IHPETAVNLRDVKKE--MKKLNDVVNGKTNSMIDVRRNSIKELTNVIQAY---PSRYVGF 91

Query: 314 NTIIT-LGKGAPYSYESADRYNKNHLVPFGEFVPLESILRPLAPFFDLPMSS 364
             +   L +    SY   +  N N LV  GE  P    ++ L P F   M S
Sbjct: 92  GNVPVGLSENDTNSYIEENIVN-NKLVGIGELTPASGQIKSLKPIFKYSMDS 142


>4GC0-A nrPDB
          Length = 491

 Score = 30.4 bits (67), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 7/80 (8%)

Query: 66  GLFGSGINWVYVSIATFGGMPGPVNIFLVVLLAAYLSLYTGLFAG-VLSRLWPKTTWLR- 123
           G  G  I    +  A +   PG V +  ++   A  ++  G     +LS ++P    +R 
Sbjct: 348 GALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFP--NAIRG 405

Query: 124 --VAIAAPALWQVTEFLRGW 141
             +AIA  A W    +   W
Sbjct: 406 KALAIAVAAQWLA-NYFVSW 424


>2EGH-A nrPDB
          Length = 424

 Score = 30.4 bits (67), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 437 ARPLLRSTNNGITAVIGPQGEIQAMIPQFTREVLTTNVTPTTGLTPYARTGNWP 490
           AR L  ++ + +  +I PQ  I +M+ ++    +   +      TP A T  WP
Sbjct: 245 ARWLFNASASQMEVLIHPQSVIHSMV-RYQDGSVLAQLGEPDMRTPIAHTMAWP 297


>4Q0G-A nrPDB
          Length = 529

 Score = 30.0 bits (66), Expect = 2.4,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 50/135 (37%), Gaps = 20/135 (14%)

Query: 266 PESAITDLEINQQPFLK----ALDGELRDK--GSSLVTGIVDARLNKQNRYDTYNTIITL 319
           P   +  L     PFL+    A  G   D+  G+ ++TGI   R++ +      N     
Sbjct: 50  PRERVDRLLDPGSPFLELAPLAAGGMYGDESPGAGIITGI--GRVSGRQCVIVANDATV- 106

Query: 320 GKGAPYSYESADRYNKNHLVPFGEFVPLESILRPLAPFFDLPMSS--------FSRGPYI 371
            KG  Y   +  ++ +   V     +P   ++     F  LP           F R  Y 
Sbjct: 107 -KGGTYYPMTVKKHLRAQEVALQNMLPCIYLVDSGGAF--LPRQDEVFPDREHFGRIFYN 163

Query: 372 QPPLSANGIELTAAI 386
           Q  +SA GI   AA+
Sbjct: 164 QATMSAKGIPQVAAV 178


>5V0T-A nrPDB
          Length = 494

 Score = 29.6 bits (65), Expect = 3.4,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 7/88 (7%)

Query: 337 HLVPFGEFVPLESILRPLAPFFDLPMSSFSRGPYIQPPLSANGI-ELTAAICYEIILGEQ 395
           HL+PF + +    +   +  F  +P       P  Q  L+     EL  A+C   +LG Q
Sbjct: 142 HLIPFAQALRAAGVKNRIGFFLHIPF------PASQVLLAVPPHRELVEALCSFDLLGFQ 195

Query: 396 VRDNFRPDTDYLLTISNDAWFGKSIGPW 423
              + R   DY++  +N      + GP 
Sbjct: 196 TAPDLRAFCDYIVNEANGTADPSASGPL 223


>3U1J-B nrPDB
          Length = 191

 Score = 29.2 bits (64), Expect = 4.6,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 44/116 (37%), Gaps = 13/116 (11%)

Query: 187 LVKRNWRPLVVAVVLFALPFPLRYIQWFTPQPEKTIQVSMVQ-GDIPQSLKWDEGQLLNT 245
            ++ NW  +   ++ +   + L   QW   Q  + +QV  V+ G  P++ +   G     
Sbjct: 73  RLEPNWASVKKDLISYGGGWRLSA-QW---QKGEEVQVIAVEPGKNPKNFQTMPGT---- 124

Query: 246 LKIYYNATAPLMGKSSLIIWPESAITDLEINQQPFLKALDGELRDKGSSLVTGIVD 301
               +  T   +G  +L   P ++ + +   +   +      +  K    V+GI  
Sbjct: 125 ----FQTTTGEIGAIALDFKPGTSGSPIINREGKVVGLYGNGVVTKNGGYVSGIAQ 176


>5NYB-A nrPDB
          Length = 283

 Score = 29.2 bits (64), Expect = 4.9,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 369 PYIQPP--LSANGIELTAAICYEIILGEQVRDNFRPDTDYLL 408
           P  QPP  LS  G +L+  + Y++   E VR         +L
Sbjct: 145 PGEQPPPVLSWGGRQLSLLVAYDVEFPEMVRAAAARGAQLVL 186


>6GCS-4 nrPDB
          Length = 486

 Score = 28.4 bits (62), Expect = 7.8,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 11/112 (9%)

Query: 67  LFGSGINWVYVSIATFGGMPGPVNIFLVVLLAAYLSLYTGLFAGVLSRLWPKTTWLRVAI 126
           LF + +  +++ I  +G        F V++     SL+  L   V+S +   T ++   +
Sbjct: 140 LFEATLPLLFILIHIYGSSDSERASFYVLMFTLSGSLFMLLSIVVISIVLNTTNFINHNL 199

Query: 127 AAPALWQVTEFLRGWVLT------GFP---WLQFGYSQIDGPLKGLAPIMGV 169
              +L   T    G  +        FP   WL   +S+   PL G   + G+
Sbjct: 200 FVLSLDLQTIIWLGLFIAIMVKTPLFPIHVWLPVVHSE--SPLAGSMILAGL 249


>2X19-B nrPDB
          Length = 963

 Score = 28.1 bits (61), Expect = 8.6,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 72/205 (35%), Gaps = 28/205 (13%)

Query: 103 LYTGLFAGVLSRLWPKTTWLRVAIAAPALWQVTEFLRGWVLTGFPWLQFGYSQIDGPLKG 162
           +Y  L A +LS L+ K   L  +   P  WQ TE L     +    +   YS +   L G
Sbjct: 434 VYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIG 493

Query: 163 LAP---IMGVEAINFLLMMVSGLLALALVKRNWRPLVVAVVLFALPFPLRYIQWFTPQPE 219
           L P   I  V+  + ++  +  L             V+ +VL AL             PE
Sbjct: 494 LIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHAL-----------GNPE 542

Query: 220 KTIQVSMVQGDIPQSLKWD-EGQLLNTLKIYYNATAPLMGKSSLIIW------------- 265
            ++        I +  K+D      N + +  +     + K+S  +W             
Sbjct: 543 LSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ 602

Query: 266 PESAITDLEINQQPFLKALDGELRD 290
            E  + +L     P+++ L+    +
Sbjct: 603 VEEILKNLHSLISPYIQQLEKLAEE 627


>2WQY-C nrPDB
          Length = 141

 Score = 28.1 bits (61), Expect = 9.2,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 9/55 (16%)

Query: 168 GVEAINFLLMMVSGLLALALVKRNWRPLVVAVVL---------FALPFPLRYIQW 213
           GV     + +     L L     ++  +V ++ L         FAL FPL Y  W
Sbjct: 46  GVALSLGVSLFSVAALLLPEQFPHYVAVVKSLSLSPALIYSAKFALVFPLSYHTW 100


>6QAA-A nrPDB
          Length = 557

 Score = 28.1 bits (61), Expect = 10.0,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 7/93 (7%)

Query: 46  ALTFNRRPLQSAAIGFCWGFGLFGS--GINWVYVSIATFGGMPGPVNIFLVVLLAAYLSL 103
           AL F   P    A G     GLF     + WV  +IA FGG P  V +F     AA +SL
Sbjct: 178 ALGFLALPGNPEAPG---NMGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSL 234

Query: 104 YTGLFA--GVLSRLWPKTTWLRVAIAAPALWQV 134
           +        + +R   ++       A  +L++ 
Sbjct: 235 HLLSPGSHSLFTRAILQSGSFNAPWAVTSLYEA 267


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.317    0.138    0.425 

Lambda     K      H
   0.267   0.0423    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,014,275
Number of Sequences: 36641
Number of extensions: 890566
Number of successful extensions: 2761
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 2730
Number of HSP's gapped (non-prelim): 47
length of query: 512
length of database: 10,336,785
effective HSP length: 101
effective length of query: 411
effective length of database: 6,636,044
effective search space: 2727414084
effective search space used: 2727414084
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.2 bits)
S2: 61 (28.1 bits)