BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= P23874
(440 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
5K98-A nrPDB 905 0.0
4PU3-A nrPDB 134 6e-32
3TJ1-A nrPDB 31 1.3
5YGR-A nrPDB 29 4.3
>5K98-A nrPDB
Length = 448
Score = 905 bits (2338), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/439 (99%), Positives = 438/439 (99%)
Query: 2 PKLVTWMNNQRVGELTKLANGAHTFKYAPEWLASRYARPLSLSLPLQRGNITSDAVFNFF 61
PKLVTWMNNQRVGELTKLANGAHTFKYAPEWLASRYARPLSLSLPLQRGNITSDAVFNFF
Sbjct: 10 PKLVTWMNNQRVGELTKLANGAHTFKYAPEWLASRYARPLSLSLPLQRGNITSDAVFNFF 69
Query: 62 DNLLPDSPIVRDRIVKRYHAKSRQPFDLLSEIGRDSVGAVTLIPEDETVTHPIMAWEKLT 121
DNLLPDSPIVRDRIVKRYHAKSRQPFDLLSEIGRDSVGAVTLIPEDETVTHPIMAWEKLT
Sbjct: 70 DNLLPDSPIVRDRIVKRYHAKSRQPFDLLSEIGRDSVGAVTLIPEDETVTHPIMAWEKLT 129
Query: 122 EARLEEVLTAYKADIPLGMIREENDFRISVAGAQEKTALLRIGNDWCIPKGITPTTHIIK 181
EARLEEVLTAYKADIPLGMIREENDFRISVAGAQEKTALLRIGNDWCIPKGITPTTHIIK
Sbjct: 130 EARLEEVLTAYKADIPLGMIREENDFRISVAGAQEKTALLRIGNDWCIPKGITPTTHIIK 189
Query: 182 LPIGEIRQPNATLDLSQSVDNEYYCLLLAKELGLNVPDAEIIKAGNVRALAVERFDRRWN 241
LPIGEIRQPNATLDLSQSVDNEYYCLLLAKELGLNVPDAEIIKAGNVRALAVERFDRRWN
Sbjct: 190 LPIGEIRQPNATLDLSQSVDNEYYCLLLAKELGLNVPDAEIIKAGNVRALAVERFDRRWN 249
Query: 242 AERTVLLRLPQEDMCQTFGLPSSVKYESDGGPGIARIMAFLMGSSEALKDRYDFMKFQVF 301
AERTVLLRLPQEDMCQTFGLPSSVKYESDGGPGIARIMAFLMGSSEALKDRYDFMKFQVF
Sbjct: 250 AERTVLLRLPQEDMCQTFGLPSSVKYESDGGPGIARIMAFLMGSSEALKDRYDFMKFQVF 309
Query: 302 QWLIGATDGHAKNFSVFIQAGGSYRLTPFYDIISAFPVLGGTGIHISDLKLAMGLNASKG 361
QWLIGAT GHAKNFSVFIQAGGSYRLTPFYDIISAFPVLGGTGIHISDLKLAMGLNASKG
Sbjct: 310 QWLIGATQGHAKNFSVFIQAGGSYRLTPFYDIISAFPVLGGTGIHISDLKLAMGLNASKG 369
Query: 362 KKTAIDKIYPRHFLATAKVLRFPEVQMHEILSDFARMIPAALDNVKTSLPTDFPENVVTA 421
KKTAIDKIYPRHFLATAKVLRFPEVQMHEILSDFARMIPAALDNVKTSLPTDFPENVVTA
Sbjct: 370 KKTAIDKIYPRHFLATAKVLRFPEVQMHEILSDFARMIPAALDNVKTSLPTDFPENVVTA 429
Query: 422 VESNVLRLHGRLSREYGSK 440
VESNVLRLHGRLSREYGSK
Sbjct: 430 VESNVLRLHGRLSREYGSK 448
>4PU3-A nrPDB
Length = 454
Score = 134 bits (338), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 128/443 (28%), Positives = 190/443 (42%), Gaps = 54/443 (12%)
Query: 13 VGELTKLANGAHTF--KYAPEWLASRYARPLSLSLPLQRGNITSDAVFNFFDNLLPDSPI 70
+GEL+ A A TF Y +W S + PLS ++PL G TS+ + F NLLP++
Sbjct: 39 IGELSFDAT-ADTFAVHYTKDWQQSGF--PLSPTIPLD-GTGTSNQISMFLVNLLPENKG 94
Query: 71 VRDRIVKRYHAKSRQPFDLLSEIGRDSVGAVTLIPED----ETVTHPIMAWEKLTEARLE 126
+ D +++ F L+ IG D+ GA+ +P+ ET PI A E
Sbjct: 95 L-DYLIESLGVSKGNTFALIRAIGLDTAGAIAFVPKGALLPETQLRPIKA---------E 144
Query: 127 EVLTAYKADIPLGMIREENDFRISVAGAQEKTALLRIGNDWCIPKGITPTTHIIKLPIGE 186
EV+ + M + R+SVAG Q K L G ++ +G +THI+K
Sbjct: 145 EVIQRIEDPTMWPMEIWDGKPRLSVAGVQPKLNLFYNGKEFAFAEGTLSSTHIVKFE--- 201
Query: 187 IRQPNATLDLSQSVDNEYYCLLLAKELGLNVPDAEIIKAGNVRALAVERFDRRWNAERTV 246
V NE+ + LAK LG+NV + +I+ G +AL VERFDRR
Sbjct: 202 --------KYHHLVINEFITMRLAKVLGMNVANVDIVHFGRYKALCVERFDRRNIPGEQR 253
Query: 247 LLRLPQEDMCQTFGLPSSVKYESDGGPG-----------IARIMAFLMGSSEALKDRYDF 295
+LR D CQ G S KYE + G G R+ + + + D
Sbjct: 254 VLRRHIVDSCQALGFSVSKKYERNFGTGRDVKDIREGVSFNRLFSLAAKCRNPVAAKQDM 313
Query: 296 MKFQVFQWLIGATDGHAKNFSVFIQAGGSYRLTPFYDIISAFPVLGGTGIHISDLKLAMG 355
+++ +F L G D H KN+S F+ G TP+YD++S + +LAM
Sbjct: 314 LQWALFNLLTGNADAHGKNYSFFMTPSG-MEPTPWYDLVSV------DMYEDFEQQLAMA 366
Query: 356 LNASKGKKTAIDKIYPRHFLATAKVLRFPEVQMHEILSDFARMIPAALDNVKTSLPTDFP 415
++ + + IY A L P + L+ AR IP A+ V LP
Sbjct: 367 ID----DEFDPNSIYAYQLAAFMDGLGLPRNLLISNLTRIARRIPQAIAEVILMLPP-LD 421
Query: 416 ENVVTAVESNVLRLHGRLSREYG 438
E+ + V +L R R G
Sbjct: 422 EDEASFVAHYKTQLLARCERYLG 444
>3TJ1-A nrPDB
Length = 649
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 386 VQMHEILSDFARMIPAALDNVKTSLPTDFPENVVT-----AVESNVLRLHGRLS 434
V H++L F RMIP+++ + T L FP T SN+L+L G S
Sbjct: 192 VCHHDMLKYFLRMIPSSMGFIDTYLAKFFPNKNDTRRKLVNYTSNLLKLRGYCS 245
>5YGR-A nrPDB
Length = 404
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 324 SYRLTPFYDIISAFPVLGGTGIHISDLKLAMGLNASKG 361
+Y +TP +++ LG IHI D GLNA KG
Sbjct: 42 NYAVTPLHNLAHLSQRLGLGSIHIKDESWRFGLNAFKG 79
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
5K98-A nrPDB 776 0.0
4PU3-A nrPDB 582 e-167
Sequences not found previously or not previously below threshold:
3CLW-A nrPDB 32 0.71
1XDJ-A nrPDB 31 0.88
5Y3M-A nrPDB 31 1.1
2CU2-A nrPDB 31 1.2
5IV5-U nrPDB 30 2.2
3NSJ-A nrPDB 29 3.5
5WLC-ST nrPDB 29 3.6
2CU0-A nrPDB 29 5.4
6D6S-A nrPDB 28 6.8
3P3Z-A nrPDB 28 8.6
1QJS-A nrPDB 28 9.9
CONVERGED!
>5K98-A nrPDB
Length = 448
Score = 776 bits (2005), Expect = 0.0, Method: Composition-based stats.
Identities = 438/439 (99%), Positives = 438/439 (99%)
Query: 2 PKLVTWMNNQRVGELTKLANGAHTFKYAPEWLASRYARPLSLSLPLQRGNITSDAVFNFF 61
PKLVTWMNNQRVGELTKLANGAHTFKYAPEWLASRYARPLSLSLPLQRGNITSDAVFNFF
Sbjct: 10 PKLVTWMNNQRVGELTKLANGAHTFKYAPEWLASRYARPLSLSLPLQRGNITSDAVFNFF 69
Query: 62 DNLLPDSPIVRDRIVKRYHAKSRQPFDLLSEIGRDSVGAVTLIPEDETVTHPIMAWEKLT 121
DNLLPDSPIVRDRIVKRYHAKSRQPFDLLSEIGRDSVGAVTLIPEDETVTHPIMAWEKLT
Sbjct: 70 DNLLPDSPIVRDRIVKRYHAKSRQPFDLLSEIGRDSVGAVTLIPEDETVTHPIMAWEKLT 129
Query: 122 EARLEEVLTAYKADIPLGMIREENDFRISVAGAQEKTALLRIGNDWCIPKGITPTTHIIK 181
EARLEEVLTAYKADIPLGMIREENDFRISVAGAQEKTALLRIGNDWCIPKGITPTTHIIK
Sbjct: 130 EARLEEVLTAYKADIPLGMIREENDFRISVAGAQEKTALLRIGNDWCIPKGITPTTHIIK 189
Query: 182 LPIGEIRQPNATLDLSQSVDNEYYCLLLAKELGLNVPDAEIIKAGNVRALAVERFDRRWN 241
LPIGEIRQPNATLDLSQSVDNEYYCLLLAKELGLNVPDAEIIKAGNVRALAVERFDRRWN
Sbjct: 190 LPIGEIRQPNATLDLSQSVDNEYYCLLLAKELGLNVPDAEIIKAGNVRALAVERFDRRWN 249
Query: 242 AERTVLLRLPQEDMCQTFGLPSSVKYESDGGPGIARIMAFLMGSSEALKDRYDFMKFQVF 301
AERTVLLRLPQEDMCQTFGLPSSVKYESDGGPGIARIMAFLMGSSEALKDRYDFMKFQVF
Sbjct: 250 AERTVLLRLPQEDMCQTFGLPSSVKYESDGGPGIARIMAFLMGSSEALKDRYDFMKFQVF 309
Query: 302 QWLIGATDGHAKNFSVFIQAGGSYRLTPFYDIISAFPVLGGTGIHISDLKLAMGLNASKG 361
QWLIGAT GHAKNFSVFIQAGGSYRLTPFYDIISAFPVLGGTGIHISDLKLAMGLNASKG
Sbjct: 310 QWLIGATQGHAKNFSVFIQAGGSYRLTPFYDIISAFPVLGGTGIHISDLKLAMGLNASKG 369
Query: 362 KKTAIDKIYPRHFLATAKVLRFPEVQMHEILSDFARMIPAALDNVKTSLPTDFPENVVTA 421
KKTAIDKIYPRHFLATAKVLRFPEVQMHEILSDFARMIPAALDNVKTSLPTDFPENVVTA
Sbjct: 370 KKTAIDKIYPRHFLATAKVLRFPEVQMHEILSDFARMIPAALDNVKTSLPTDFPENVVTA 429
Query: 422 VESNVLRLHGRLSREYGSK 440
VESNVLRLHGRLSREYGSK
Sbjct: 430 VESNVLRLHGRLSREYGSK 448
>4PU3-A nrPDB
Length = 454
Score = 582 bits (1501), Expect = e-167, Method: Composition-based stats.
Identities = 128/443 (28%), Positives = 190/443 (42%), Gaps = 54/443 (12%)
Query: 13 VGELTKLANGAHTF--KYAPEWLASRYARPLSLSLPLQRGNITSDAVFNFFDNLLPDSPI 70
+GEL+ A A TF Y +W S + PLS ++PL G TS+ + F NLLP++
Sbjct: 39 IGELSFDAT-ADTFAVHYTKDWQQSGF--PLSPTIPLD-GTGTSNQISMFLVNLLPENKG 94
Query: 71 VRDRIVKRYHAKSRQPFDLLSEIGRDSVGAVTLIPED----ETVTHPIMAWEKLTEARLE 126
+ D +++ F L+ IG D+ GA+ +P+ ET PI A E
Sbjct: 95 L-DYLIESLGVSKGNTFALIRAIGLDTAGAIAFVPKGALLPETQLRPIKA---------E 144
Query: 127 EVLTAYKADIPLGMIREENDFRISVAGAQEKTALLRIGNDWCIPKGITPTTHIIKLPIGE 186
EV+ + M + R+SVAG Q K L G ++ +G +THI+K
Sbjct: 145 EVIQRIEDPTMWPMEIWDGKPRLSVAGVQPKLNLFYNGKEFAFAEGTLSSTHIVKFE--- 201
Query: 187 IRQPNATLDLSQSVDNEYYCLLLAKELGLNVPDAEIIKAGNVRALAVERFDRRWNAERTV 246
V NE+ + LAK LG+NV + +I+ G +AL VERFDRR
Sbjct: 202 --------KYHHLVINEFITMRLAKVLGMNVANVDIVHFGRYKALCVERFDRRNIPGEQR 253
Query: 247 LLRLPQEDMCQTFGLPSSVKYESDGGPG-----------IARIMAFLMGSSEALKDRYDF 295
+LR D CQ G S KYE + G G R+ + + + D
Sbjct: 254 VLRRHIVDSCQALGFSVSKKYERNFGTGRDVKDIREGVSFNRLFSLAAKCRNPVAAKQDM 313
Query: 296 MKFQVFQWLIGATDGHAKNFSVFIQAGGSYRLTPFYDIISAFPVLGGTGIHISDLKLAMG 355
+++ +F L G D H KN+S F+ G TP+YD++S + +LAM
Sbjct: 314 LQWALFNLLTGNADAHGKNYSFFMTPSG-MEPTPWYDLVSV------DMYEDFEQQLAMA 366
Query: 356 LNASKGKKTAIDKIYPRHFLATAKVLRFPEVQMHEILSDFARMIPAALDNVKTSLPTDFP 415
++ + + IY A L P + L+ AR IP A+ V LP
Sbjct: 367 ID----DEFDPNSIYAYQLAAFMDGLGLPRNLLISNLTRIARRIPQAIAEVILMLPP-LD 421
Query: 416 ENVVTAVESNVLRLHGRLSREYG 438
E+ + V +L R R G
Sbjct: 422 EDEASFVAHYKTQLLARCERYLG 444
>3CLW-A nrPDB
Length = 507
Score = 31.6 bits (70), Expect = 0.71, Method: Composition-based stats.
Identities = 21/130 (16%), Positives = 41/130 (31%), Gaps = 10/130 (7%)
Query: 292 RYDFMKFQVFQWLIGATDGHAKNFSVFIQAGGSYRLTPFYDIISAFP---VLGGTGIHIS 348
+YDF K QW + A N +F Y +T +S L
Sbjct: 101 KYDFTKQAGQQWFMKAARERGMNNFLFFTNSAPYFMTRSASTVSTDQDCINLQNDKFDDF 160
Query: 349 DLKLAMGLNASKGKKTAIDKIYP-------RHFLATAKVLRFPEVQMHEILSDFARMIPA 401
L + + ++ I P H + + + ++ ++ + + I
Sbjct: 161 ARFLVKSAQHFREQGFHVNYISPNNEPNGQWHANSFQEGSFATKADLYRMVEELDKAISE 220
Query: 402 ALDNVKTSLP 411
A + K +P
Sbjct: 221 AQIDTKILIP 230
>1XDJ-A nrPDB
Length = 766
Score = 31.2 bits (69), Expect = 0.88, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 252 QEDMCQTFGLPSSVKYESDGGPGIARIMAFLMGSSEALKDRYDFMKFQVFQW 303
+ C F LP +++ E++ G+ +AF E LK DF++ + F
Sbjct: 337 ISNSCPLFHLPVTLELENNLPGGLKEKLAFAKEKLEELKMLKDFLEGKTFDL 388
>5Y3M-A nrPDB
Length = 801
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 387 QMHEILSDFARMIPAALDNVKTS---LPTDFPENVVTAVESNVLRLHGRLSR 435
+ L++ R +P +LD + S + T PE++ VL + G R
Sbjct: 185 LKYNNLTEVPRRLPPSLDTLLLSYNHIVTLAPEDLANLTALRVLDVGGNCRR 236
>2CU2-A nrPDB
Length = 337
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 32 WLASRYARPLSLSLPLQRGNITSDAVFNFFDNLLPDSPIVRDRIVKRYHAKSRQPFD--- 88
W SR RP LPL G +A L+P + V+R +P+
Sbjct: 17 WPLSREDRP-KPFLPLFEGKTLLEATLERLAPLVPPERTLL--AVRRDQEAVARPYADGI 73
Query: 89 --LLSEIGRDSVGAVTL 103
LL +GRD+ GAV L
Sbjct: 74 RLLLEPLGRDTAGAVLL 90
>5IV5-U nrPDB
Length = 364
Score = 30.1 bits (66), Expect = 2.2, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 4/87 (4%)
Query: 7 WMNNQRVGELTKLANGAHTFKYAPEWLASRYARPLSLSLPLQRGNITSDAVFNFFDNLLP 66
+ N GE K A Y +W S PLS + + + + L+
Sbjct: 228 YFNYFSYGETGKSQYAAEIKGYLDDWYRSTLIEPLSPEDAAKNKTLFEKMTSSLTNVLVV 287
Query: 67 DSPIVRDRIVKRYHAKSRQPFDLLSEI 93
+P V +VK + A S+ FD +EI
Sbjct: 288 SNPTV--WMVKNFGATSK--FDGKTEI 310
>3NSJ-A nrPDB
Length = 540
Score = 29.3 bits (64), Expect = 3.5, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Query: 15 ELTKLANGAHTFKYA-PEWLASRYARPLSLSLPLQRGNITSDAVFNFFDNLLPDSPIVRD 73
E K A +F E PL + L GN + F+ + LP +P + D
Sbjct: 260 EKKKQHKMATSFHQTYRERHVEVLGGPLDSTHDLLFGNQATPEQFSTWTASLPSNPGLVD 319
Query: 74 RIVKRYH 80
++ H
Sbjct: 320 YSLEPLH 326
>5WLC-ST nrPDB
Length = 792
Score = 29.3 bits (64), Expect = 3.6, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 348 SDLKLAMGLNASKGKKTAIDKIYPRHFLATAKVLRFPEVQMHEILSDFARMIPAALDNVK 407
+L L + ++ +K + T I P H L+T P Q +L + + A + V
Sbjct: 578 YELGLPLDVDFTKKRST----IIPLHTLSTMDTEAHPVDQCVSVLLNVMESLDATISTVW 633
Query: 408 TSLP 411
SLP
Sbjct: 634 KSLP 637
>2CU0-A nrPDB
Length = 486
Score = 28.5 bits (62), Expect = 5.4, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 71 VRDRIVKRYHAKSRQPFDLLSEIGRDSVGAVTLIPEDETVTHPIMAWEKLTEARLEEVLT 130
VRD + A + PFD+ I D G V +I D H + A + + E R
Sbjct: 212 VRDENGELLVAAAVSPFDIKRAIELDKAG-VDVIVVDTAHAHNLKAIKSMKEMR-----Q 265
Query: 131 AYKADIPLGMI 141
AD +G I
Sbjct: 266 KVDADFIVGNI 276
>6D6S-A nrPDB
Length = 443
Score = 28.1 bits (61), Expect = 6.8, Method: Composition-based stats.
Identities = 14/69 (20%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 70 IVRDRIVKRYHAKSRQPFDLLSEIGRDSVG---AVTLIPEDETVTHPIMAWEKLTEARLE 126
++R + +R+ +Q +L E+ + V L+ + T+ + A E+ + +E
Sbjct: 324 VLRRQAAQRFGGNEKQALELPRELFEEQAKRRVVVGLLLGEVIRTNELKADEERVKGLIE 383
Query: 127 EVLTAYKAD 135
E+ +AY+
Sbjct: 384 EMASAYEDP 392
>3P3Z-A nrPDB
Length = 416
Score = 28.1 bits (61), Expect = 8.6, Method: Composition-based stats.
Identities = 38/204 (18%), Positives = 66/204 (32%), Gaps = 32/204 (15%)
Query: 250 LPQEDMCQTFGLPSSVKYESDGGPGIARIMAFLMGSSEALKDRYDFMKFQVFQWLIGATD 309
LP MCQ G P Y++ G I + AL + D L+
Sbjct: 157 LPALVMCQLLGFPLE-DYDTVGRLSIETNLGL------ALSNDQDI--------LVKVEQ 201
Query: 310 GHAKNFSVFIQAGGSYRLTPFYDIISAFPVLGGTGI-HISDLKLAMGLNASKGKKTAIDK 368
G + F + A ++ P D+ S G+ +L+ + G +T +
Sbjct: 202 GLGRMFDYLVAAIEKRKVEPGDDLTSDIVRAFHDGVLDDYELRTLVATVLVAGYETTNHQ 261
Query: 369 I------YPRHFLATAKVLRFPEV--QMHEILSDFARMIPAALDNVK--------TSLPT 412
+ + +H K+ PE+ Q E + ++ +P V +PT
Sbjct: 262 LALAMYDFAQHPDQWMKIKENPELAPQAVEEVLRWSPTLPVTATRVAAEDFEVNGVRIPT 321
Query: 413 DFPENVVTAVESNVLRLHGRLSRE 436
P + V R+ R
Sbjct: 322 GTPVFMCAHVAHRDPRVFADADRF 345
>1QJS-A nrPDB
Length = 460
Score = 27.8 bits (60), Expect = 9.9, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 12/117 (10%)
Query: 37 YARPLSLSLPLQRGNITSDAVFNFFDNL--LPDSPIVRDRIVKRYHAKSRQPFDLLSEIG 94
++ P++ P +G T DA F++ D L + D+ + Y + P L E+G
Sbjct: 291 HSWPIAHQWP--QGPSTVDAAFSWEDKLYLIQDTKVYVFLTKGGYTLVNGYPKRLEKELG 348
Query: 95 ------RDSVGAVTLIPEDETVTHPIMAWEKLTEARLEEVLTAYKADIPLGMIREEN 145
++V A + + H IMA +L L+ A ++P + +
Sbjct: 349 SPPVISLEAVDA-AFVCPGSSRLH-IMAGRRLWWLDLKSGAQATWTELPWPHEKVDG 403
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.312 0.130 0.355
Lambda K H
0.267 0.0398 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,415,746
Number of Sequences: 36641
Number of extensions: 642409
Number of successful extensions: 1596
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1574
Number of HSP's gapped (non-prelim): 22
length of query: 440
length of database: 10,336,785
effective HSP length: 100
effective length of query: 340
effective length of database: 6,672,685
effective search space: 2268712900
effective search space used: 2268712900
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 60 (27.8 bits)