BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= P22224
         (910 letters)

Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 
           36,641 sequences; 10,336,785 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

5YFP-F nrPDB                                                         1849   0.0  
2A2F-X nrPDB                                                           39   0.008
4K22-A nrPDB                                                           37   0.045
5WLQ-A nrPDB                                                           37   0.051
2GDR-A nrPDB                                                           30   3.9  
6C96-A nrPDB                                                           30   6.7  
5OQJ-X nrPDB                                                           29   8.3  

>5YFP-F nrPDB
          Length = 910

 Score = 1849 bits (4789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 910/910 (100%), Positives = 910/910 (100%)

Query: 1   MDQEGQPLLSKDFQQVLLATASGNNSSWTERAVLNNESTDAVKHEPALGQNDVFDLDPLS 60
           MDQEGQPLLSKDFQQVLLATASGNNSSWTERAVLNNESTDAVKHEPALGQNDVFDLDPLS
Sbjct: 1   MDQEGQPLLSKDFQQVLLATASGNNSSWTERAVLNNESTDAVKHEPALGQNDVFDLDPLS 60

Query: 61  FDKWVPFLRRALDKNQLDPVIDELENSIEDNFQGLELQLLQDSQMNDKLETSIDEIANIQ 120
           FDKWVPFLRRALDKNQLDPVIDELENSIEDNFQGLELQLLQDSQMNDKLETSIDEIANIQ
Sbjct: 61  FDKWVPFLRRALDKNQLDPVIDELENSIEDNFQGLELQLLQDSQMNDKLETSIDEIANIQ 120

Query: 121 GMVQDTLSSEISKFQIRLSESANELIVKKQMYVNNKKISLKISEATILITKVVRILELSS 180
           GMVQDTLSSEISKFQIRLSESANELIVKKQMYVNNKKISLKISEATILITKVVRILELSS
Sbjct: 121 GMVQDTLSSEISKFQIRLSESANELIVKKQMYVNNKKISLKISEATILITKVVRILELSS 180

Query: 181 KCQELITERKFFKVLQNLDSLEKLYLQEFKNYNFQFLIEIYNSIPFLQKVTKDECINLIR 240
           KCQELITERKFFKVLQNLDSLEKLYLQEFKNYNFQFLIEIYNSIPFLQKVTKDECINLIR
Sbjct: 181 KCQELITERKFFKVLQNLDSLEKLYLQEFKNYNFQFLIEIYNSIPFLQKVTKDECINLIR 240

Query: 241 NSLNLNLGKNLIKVGQEFVAIYENELLPQWLETRSKMKLTNFKFNSPIEISMRDESFLAK 300
           NSLNLNLGKNLIKVGQEFVAIYENELLPQWLETRSKMKLTNFKFNSPIEISMRDESFLAK
Sbjct: 241 NSLNLNLGKNLIKVGQEFVAIYENELLPQWLETRSKMKLTNFKFNSPIEISMRDESFLAK 300

Query: 301 LNLGEFFQLDDFHDSIMIFQNLNELSVLSGEFNKEYELRKTKLMYPLIWKKNKTAAYQMD 360
           LNLGEFFQLDDFHDSIMIFQNLNELSVLSGEFNKEYELRKTKLMYPLIWKKNKTAAYQMD
Sbjct: 301 LNLGEFFQLDDFHDSIMIFQNLNELSVLSGEFNKEYELRKTKLMYPLIWKKNKTAAYQMD 360

Query: 361 SLLRGTGTTPGSTAHDVSTDDPFTQSLSLHFLQDYFLKILGFLLYDINLNKATEFILVDN 420
           SLLRGTGTTPGSTAHDVSTDDPFTQSLSLHFLQDYFLKILGFLLYDINLNKATEFILVDN
Sbjct: 361 SLLRGTGTTPGSTAHDVSTDDPFTQSLSLHFLQDYFLKILGFLLYDINLNKATEFILVDN 420

Query: 421 NYNSTNEFWDGLMDRLSPYLSYFIDEKLKTEEDMIKLKDFLCIYVAILENFKLNIEPLYK 480
           NYNSTNEFWDGLMDRLSPYLSYFIDEKLKTEEDMIKLKDFLCIYVAILENFKLNIEPLYK
Sbjct: 421 NYNSTNEFWDGLMDRLSPYLSYFIDEKLKTEEDMIKLKDFLCIYVAILENFKLNIEPLYK 480

Query: 481 ILVSIFEKFCSVSLRAFDDEFQILLNDDDFMPLSINDKTLYEKVLKICWMKEGEHLSLPD 540
           ILVSIFEKFCSVSLRAFDDEFQILLNDDDFMPLSINDKTLYEKVLKICWMKEGEHLSLPD
Sbjct: 481 ILVSIFEKFCSVSLRAFDDEFQILLNDDDFMPLSINDKTLYEKVLKICWMKEGEHLSLPD 540

Query: 541 PTNGEPFAVTLPFSPLYPMTCTLAKKTYSKITAFLSIFYRHELHTLNNILVKTMDDIFND 600
           PTNGEPFAVTLPFSPLYPMTCTLAKKTYSKITAFLSIFYRHELHTLNNILVKTMDDIFND
Sbjct: 541 PTNGEPFAVTLPFSPLYPMTCTLAKKTYSKITAFLSIFYRHELHTLNNILVKTMDDIFND 600

Query: 601 IVNKKIRSKLESTSREEIAQILVNLDYFIIAAKEFSNFMTRENILQNPDMEIRLSSIKYL 660
           IVNKKIRSKLESTSREEIAQILVNLDYFIIAAKEFSNFMTRENILQNPDMEIRLSSIKYL
Sbjct: 601 IVNKKIRSKLESTSREEIAQILVNLDYFIIAAKEFSNFMTRENILQNPDMEIRLSSIKYL 660

Query: 661 AESRKLAETKLIELIDSKISDILETIEIDWQITEVRQDPDISIIDLAQFLEMMFASTLQN 720
           AESRKLAETKLIELIDSKISDILETIEIDWQITEVRQDPDISIIDLAQFLEMMFASTLQN
Sbjct: 661 AESRKLAETKLIELIDSKISDILETIEIDWQITEVRQDPDISIIDLAQFLEMMFASTLQN 720

Query: 721 LPYSVQTLLIFREFDSLTRQFMGLLLHDTPSTITHESIMNFEVDVNYLESIIPRIFPSTP 780
           LPYSVQTLLIFREFDSLTRQFMGLLLHDTPSTITHESIMNFEVDVNYLESIIPRIFPSTP
Sbjct: 721 LPYSVQTLLIFREFDSLTRQFMGLLLHDTPSTITHESIMNFEVDVNYLESIIPRIFPSTP 780

Query: 781 GTIDSNGYQSPMTPSTPTFPNANGVDAPTLFENNIKSLEATFMELKQCIELLKTQGKDYN 840
           GTIDSNGYQSPMTPSTPTFPNANGVDAPTLFENNIKSLEATFMELKQCIELLKTQGKDYN
Sbjct: 781 GTIDSNGYQSPMTPSTPTFPNANGVDAPTLFENNIKSLEATFMELKQCIELLKTQGKDYN 840

Query: 841 EPEIRLRKYSRIRQEDAALLLSKIQHFVSSVEGANGDDTSVMDSSSIFNSESASVIDSNT 900
           EPEIRLRKYSRIRQEDAALLLSKIQHFVSSVEGANGDDTSVMDSSSIFNSESASVIDSNT
Sbjct: 841 EPEIRLRKYSRIRQEDAALLLSKIQHFVSSVEGANGDDTSVMDSSSIFNSESASVIDSNT 900

Query: 901 SRIAKFFNRR 910
           SRIAKFFNRR
Sbjct: 901 SRIAKFFNRR 910


>2A2F-X nrPDB
          Length = 325

 Score = 39.3 bits (90), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 57/298 (19%), Positives = 117/298 (39%), Gaps = 22/298 (7%)

Query: 478 LYKILVSIFEKFCSVSLRAFDDEFQILLNDDDFMPLSINDKTLYEKVLKICWMKEGEHLS 537
           L+++L ++ + +  V L+ +   F+ +L+ + F+P+ + +   YE +++  +    E L 
Sbjct: 5   LWELLHNMRDHYNEVLLQRWVHVFREILDKEQFLPMVVQNTEEYECIIER-FPFHSEQL- 62

Query: 538 LPDPTNGEPFAVTLPFSPLYPMTCTLAKKTYSKITAFLSIFYRHELHTLNNILVKTMDDI 597
                   PF    PFS + P     AK+       F       EL    N +   +   
Sbjct: 63  -----ENAPFPKKFPFSRMVPEVYHQAKEFMYACMKFAE-----ELTLSPNEVAAMVRKA 112

Query: 598 FNDIVNKKIRSKLESTSRE------EIAQILVNLDYFIIAAKEFSNFMTRENILQNPDME 651
            N ++ +     L    R+      ++ QI+++  Y   A      F+     + N +  
Sbjct: 113 ANLLLTRSFSGCLSVVFRQPSITLTQLIQIIIDTQYLEKAGPFLDEFVCH---MTNTERS 169

Query: 652 IRLSSIKYLAESRKLAETKLIELIDSKISDILETIEIDWQITEVRQDPDISIIDLAQFLE 711
           +  +       +R+ AE ++   I SKI +  E    DW + E        I D+  +L+
Sbjct: 170 VSQTPSAMFHVARQDAEKQVGLRICSKIDEFFELSAYDWLLVEPPGIASAFITDMISYLK 229

Query: 712 MMFASTLQNLPYSVQTLLIFREFDSLTRQFMGLLLHDTPSTITHESIMNFEVDVNYLE 769
             F S    LP+  Q     R F+ +  +   ++  +    I+  ++    +D+   E
Sbjct: 230 STFDSFAFKLPHIAQAACR-RTFEHIAEKIYSIMYDEDVKQISTGALTQINLDLMQCE 286


>4K22-A nrPDB
          Length = 365

 Score = 36.6 bits (83), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 804 GVDAPTLFENNIKSLEATFMELKQCIELLKT---QGKDYNEPEIRLRKYSRIRQEDAALL 860
           G  A T+     + +   FM+  + I  LK    QGKD  +  I LR+Y R R+  AAL+
Sbjct: 288 GDAAHTIHPLAGQGVNLGFMDAAELIAELKRLHRQGKDIGQ-YIYLRRYERSRKHSAALM 346

Query: 861 LSKIQHFVSSVEGAN 875
           L+ +Q F     G N
Sbjct: 347 LAGMQGFRDLFSGTN 361


>5WLQ-A nrPDB
          Length = 180

 Score = 36.6 bits (83), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 5/75 (6%)

Query: 600 DIVNKKIRSKLESTSR-EEIAQILVNLDYFIIAAKEFSNFMTRENILQNPDMEIRLSSIK 658
           DI+NK +  +L  + R E + Q+ VN   F+    E+++   R N+LQ    E+R + ++
Sbjct: 13  DILNKLLDPELAQSERTEALQQLRVNYGSFV---SEYNDLTKRNNLLQAELEELR-AVVE 68

Query: 659 YLAESRKLAETKLIE 673
               SRKLAE +LIE
Sbjct: 69  QTERSRKLAEQELIE 83


>2GDR-A nrPDB
          Length = 202

 Score = 30.4 bits (67), Expect = 3.9,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)

Query: 200 SLEKLYLQEFKNYNFQFLIEIYNSI-PFLQKVTKDECINLIRNSLNLNLGK 249
           S E+ +LQ++ N+      E++ S  P     + DE  N +R SLN  LG+
Sbjct: 88  SFERYHLQQWLNF---ISSELHKSFSPLFNPASSDEWKNAVRQSLNTRLGQ 135


>6C96-A nrPDB
          Length = 825

 Score = 29.6 bits (65), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 11/130 (8%)

Query: 572 TAFLSIFYRHELHTLNNILVKTMDDIFNDIVNKKIRSKL--ESTSREEIAQILVNLDYFI 629
             F  ++   EL+ + N+L+  + D FNDI   K +S L  + T+ +    +L +     
Sbjct: 298 CVFFIVYLSIELYFIMNLLLAVVFDTFNDIEKHKFKSLLLHKRTAIQHAYGLLASQRRPA 357

Query: 630 -IAAKEFSNFMTRENILQNPDMEIRLSSIKYLAESRKLAETKLIELIDSKISDILETIEI 688
            I+ ++F   M        P M  R   + + A ++  + T L+ L D    DI E   +
Sbjct: 358 GISYRQFEGLMR----FYKPRMSARERFLTFKALNQ--SNTPLLSLKD--FYDIYEVAAL 409

Query: 689 DWQITEVRQD 698
            W+    RQ 
Sbjct: 410 QWKAKRNRQH 419


>5OQJ-X nrPDB
          Length = 328

 Score = 29.3 bits (64), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 246 NLGKNLIKVGQEFVAIYENELLPQWLETRSKMK 278
           N G NL  + +EFV ++EN  LPQ+ E   K++
Sbjct: 247 NSGGNLKCIDEEFVKMWENVQLPQFAELPRKLQ 279


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

5YFP-F nrPDB                                                         1828   0.0  

Sequences not found previously or not previously below threshold:

2A2F-X nrPDB                                                           46   9e-05
5WLQ-A nrPDB                                                           40   0.004
4K22-A nrPDB                                                           37   0.048
5U24-A nrPDB                                                           34   0.34 
4R7O-A nrPDB                                                           32   1.7  
6C96-A nrPDB                                                           32   1.8  
5C9H-A nrPDB                                                           32   1.8  
6I3U-A nrPDB                                                           32   1.8  
4UMK-A nrPDB                                                           31   2.4  
6CPU-A nrPDB                                                           31   2.9  
5NIL-D nrPDB                                                           30   3.3  
2GDR-A nrPDB                                                           30   4.0  
5OWV-A nrPDB                                                           30   5.1  
2YK0-A nrPDB                                                           30   5.9  
5N28-B nrPDB                                                           30   6.0  
3F8T-A nrPDB                                                           30   6.8  
2R4G-A nrPDB                                                           29   8.7  
2OUX-A nrPDB                                                           29   9.5  

>5YFP-F nrPDB
          Length = 910

 Score = 1828 bits (4736), Expect = 0.0,   Method: Composition-based stats.
 Identities = 910/910 (100%), Positives = 910/910 (100%)

Query: 1   MDQEGQPLLSKDFQQVLLATASGNNSSWTERAVLNNESTDAVKHEPALGQNDVFDLDPLS 60
           MDQEGQPLLSKDFQQVLLATASGNNSSWTERAVLNNESTDAVKHEPALGQNDVFDLDPLS
Sbjct: 1   MDQEGQPLLSKDFQQVLLATASGNNSSWTERAVLNNESTDAVKHEPALGQNDVFDLDPLS 60

Query: 61  FDKWVPFLRRALDKNQLDPVIDELENSIEDNFQGLELQLLQDSQMNDKLETSIDEIANIQ 120
           FDKWVPFLRRALDKNQLDPVIDELENSIEDNFQGLELQLLQDSQMNDKLETSIDEIANIQ
Sbjct: 61  FDKWVPFLRRALDKNQLDPVIDELENSIEDNFQGLELQLLQDSQMNDKLETSIDEIANIQ 120

Query: 121 GMVQDTLSSEISKFQIRLSESANELIVKKQMYVNNKKISLKISEATILITKVVRILELSS 180
           GMVQDTLSSEISKFQIRLSESANELIVKKQMYVNNKKISLKISEATILITKVVRILELSS
Sbjct: 121 GMVQDTLSSEISKFQIRLSESANELIVKKQMYVNNKKISLKISEATILITKVVRILELSS 180

Query: 181 KCQELITERKFFKVLQNLDSLEKLYLQEFKNYNFQFLIEIYNSIPFLQKVTKDECINLIR 240
           KCQELITERKFFKVLQNLDSLEKLYLQEFKNYNFQFLIEIYNSIPFLQKVTKDECINLIR
Sbjct: 181 KCQELITERKFFKVLQNLDSLEKLYLQEFKNYNFQFLIEIYNSIPFLQKVTKDECINLIR 240

Query: 241 NSLNLNLGKNLIKVGQEFVAIYENELLPQWLETRSKMKLTNFKFNSPIEISMRDESFLAK 300
           NSLNLNLGKNLIKVGQEFVAIYENELLPQWLETRSKMKLTNFKFNSPIEISMRDESFLAK
Sbjct: 241 NSLNLNLGKNLIKVGQEFVAIYENELLPQWLETRSKMKLTNFKFNSPIEISMRDESFLAK 300

Query: 301 LNLGEFFQLDDFHDSIMIFQNLNELSVLSGEFNKEYELRKTKLMYPLIWKKNKTAAYQMD 360
           LNLGEFFQLDDFHDSIMIFQNLNELSVLSGEFNKEYELRKTKLMYPLIWKKNKTAAYQMD
Sbjct: 301 LNLGEFFQLDDFHDSIMIFQNLNELSVLSGEFNKEYELRKTKLMYPLIWKKNKTAAYQMD 360

Query: 361 SLLRGTGTTPGSTAHDVSTDDPFTQSLSLHFLQDYFLKILGFLLYDINLNKATEFILVDN 420
           SLLRGTGTTPGSTAHDVSTDDPFTQSLSLHFLQDYFLKILGFLLYDINLNKATEFILVDN
Sbjct: 361 SLLRGTGTTPGSTAHDVSTDDPFTQSLSLHFLQDYFLKILGFLLYDINLNKATEFILVDN 420

Query: 421 NYNSTNEFWDGLMDRLSPYLSYFIDEKLKTEEDMIKLKDFLCIYVAILENFKLNIEPLYK 480
           NYNSTNEFWDGLMDRLSPYLSYFIDEKLKTEEDMIKLKDFLCIYVAILENFKLNIEPLYK
Sbjct: 421 NYNSTNEFWDGLMDRLSPYLSYFIDEKLKTEEDMIKLKDFLCIYVAILENFKLNIEPLYK 480

Query: 481 ILVSIFEKFCSVSLRAFDDEFQILLNDDDFMPLSINDKTLYEKVLKICWMKEGEHLSLPD 540
           ILVSIFEKFCSVSLRAFDDEFQILLNDDDFMPLSINDKTLYEKVLKICWMKEGEHLSLPD
Sbjct: 481 ILVSIFEKFCSVSLRAFDDEFQILLNDDDFMPLSINDKTLYEKVLKICWMKEGEHLSLPD 540

Query: 541 PTNGEPFAVTLPFSPLYPMTCTLAKKTYSKITAFLSIFYRHELHTLNNILVKTMDDIFND 600
           PTNGEPFAVTLPFSPLYPMTCTLAKKTYSKITAFLSIFYRHELHTLNNILVKTMDDIFND
Sbjct: 541 PTNGEPFAVTLPFSPLYPMTCTLAKKTYSKITAFLSIFYRHELHTLNNILVKTMDDIFND 600

Query: 601 IVNKKIRSKLESTSREEIAQILVNLDYFIIAAKEFSNFMTRENILQNPDMEIRLSSIKYL 660
           IVNKKIRSKLESTSREEIAQILVNLDYFIIAAKEFSNFMTRENILQNPDMEIRLSSIKYL
Sbjct: 601 IVNKKIRSKLESTSREEIAQILVNLDYFIIAAKEFSNFMTRENILQNPDMEIRLSSIKYL 660

Query: 661 AESRKLAETKLIELIDSKISDILETIEIDWQITEVRQDPDISIIDLAQFLEMMFASTLQN 720
           AESRKLAETKLIELIDSKISDILETIEIDWQITEVRQDPDISIIDLAQFLEMMFASTLQN
Sbjct: 661 AESRKLAETKLIELIDSKISDILETIEIDWQITEVRQDPDISIIDLAQFLEMMFASTLQN 720

Query: 721 LPYSVQTLLIFREFDSLTRQFMGLLLHDTPSTITHESIMNFEVDVNYLESIIPRIFPSTP 780
           LPYSVQTLLIFREFDSLTRQFMGLLLHDTPSTITHESIMNFEVDVNYLESIIPRIFPSTP
Sbjct: 721 LPYSVQTLLIFREFDSLTRQFMGLLLHDTPSTITHESIMNFEVDVNYLESIIPRIFPSTP 780

Query: 781 GTIDSNGYQSPMTPSTPTFPNANGVDAPTLFENNIKSLEATFMELKQCIELLKTQGKDYN 840
           GTIDSNGYQSPMTPSTPTFPNANGVDAPTLFENNIKSLEATFMELKQCIELLKTQGKDYN
Sbjct: 781 GTIDSNGYQSPMTPSTPTFPNANGVDAPTLFENNIKSLEATFMELKQCIELLKTQGKDYN 840

Query: 841 EPEIRLRKYSRIRQEDAALLLSKIQHFVSSVEGANGDDTSVMDSSSIFNSESASVIDSNT 900
           EPEIRLRKYSRIRQEDAALLLSKIQHFVSSVEGANGDDTSVMDSSSIFNSESASVIDSNT
Sbjct: 841 EPEIRLRKYSRIRQEDAALLLSKIQHFVSSVEGANGDDTSVMDSSSIFNSESASVIDSNT 900

Query: 901 SRIAKFFNRR 910
           SRIAKFFNRR
Sbjct: 901 SRIAKFFNRR 910


>2A2F-X nrPDB
          Length = 325

 Score = 45.8 bits (107), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 119/298 (39%), Gaps = 22/298 (7%)

Query: 478 LYKILVSIFEKFCSVSLRAFDDEFQILLNDDDFMPLSINDKTLYEKVLKICWMKEGEHLS 537
           L+++L ++ + +  V L+ +   F+ +L+ + F+P+ + +   YE +++  +    E L 
Sbjct: 5   LWELLHNMRDHYNEVLLQRWVHVFREILDKEQFLPMVVQNTEEYECIIER-FPFHSEQLE 63

Query: 538 LPDPTNGEPFAVTLPFSPLYPMTCTLAKKTYSKITAFLSIFYRHELHTLNNILVKTMDDI 597
                   PF    PFS + P     AK+       +  + +  EL    N +   +   
Sbjct: 64  ------NAPFPKKFPFSRMVPEVYHQAKEF-----MYACMKFAEELTLSPNEVAAMVRKA 112

Query: 598 FNDIVNKKIRSKLESTSRE------EIAQILVNLDYFIIAAKEFSNFMTRENILQNPDME 651
            N ++ +     L    R+      ++ QI+++  Y   A      F+     + N +  
Sbjct: 113 ANLLLTRSFSGCLSVVFRQPSITLTQLIQIIIDTQYLEKAGPFLDEFVCH---MTNTERS 169

Query: 652 IRLSSIKYLAESRKLAETKLIELIDSKISDILETIEIDWQITEVRQDPDISIIDLAQFLE 711
           +  +       +R+ AE ++   I SKI +  E    DW + E        I D+  +L+
Sbjct: 170 VSQTPSAMFHVARQDAEKQVGLRICSKIDEFFELSAYDWLLVEPPGIASAFITDMISYLK 229

Query: 712 MMFASTLQNLPYSVQTLLIFREFDSLTRQFMGLLLHDTPSTITHESIMNFEVDVNYLE 769
             F S    LP+  Q     R F+ +  +   ++  +    I+  ++    +D+   E
Sbjct: 230 STFDSFAFKLPHIAQA-ACRRTFEHIAEKIYSIMYDEDVKQISTGALTQINLDLMQCE 286


>5WLQ-A nrPDB
          Length = 180

 Score = 40.0 bits (92), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 5/75 (6%)

Query: 600 DIVNKKIRSKLESTSREE-IAQILVNLDYFIIAAKEFSNFMTRENILQNPDMEIRLSSIK 658
           DI+NK +  +L  + R E + Q+ VN   F+    E+++   R N+LQ    E+R + ++
Sbjct: 13  DILNKLLDPELAQSERTEALQQLRVNYGSFV---SEYNDLTKRNNLLQAELEELR-AVVE 68

Query: 659 YLAESRKLAETKLIE 673
               SRKLAE +LIE
Sbjct: 69  QTERSRKLAEQELIE 83


>4K22-A nrPDB
          Length = 365

 Score = 36.6 bits (83), Expect = 0.048,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 822 FMELKQCIELLKT---QGKDYNEPEIRLRKYSRIRQEDAALLLSKIQHFVSSVEGAN 875
           FM+  + I  LK    QGKD  +  I LR+Y R R+  AAL+L+ +Q F     G N
Sbjct: 306 FMDAAELIAELKRLHRQGKDIGQ-YIYLRRYERSRKHSAALMLAGMQGFRDLFSGTN 361


>5U24-A nrPDB
          Length = 382

 Score = 33.9 bits (76), Expect = 0.34,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 69/165 (41%), Gaps = 28/165 (16%)

Query: 421 NYNSTNEF---WDGLMDRLSPYLSYFIDEKLK-TEEDMIKLKDFLCIYVAILENFKLNIE 476
           NY S  ++   + GL  RL    + F+D KLK  +ED  K K+    Y+  ++N  + I 
Sbjct: 233 NYGSHKKYENLYTGLNSRLDEIQAAFLDIKLKYLDEDNNKRKNIANFYLQNIKNENI-IL 291

Query: 477 PLYKILVSIFEKFCSVSLRAFDDEFQILLNDDDFM-----PLSINDKTLYEKVLKICWMK 531
           P  K    ++  F  V      DE Q  LN+ D       P+  + +  Y         K
Sbjct: 292 PSNK-FDHVWHLF--VVKTKLRDELQHYLNNHDIQTIIHYPIPPHKQKCY---------K 339

Query: 532 EGEHLSLPDPTNGEPFAVTLPFSPLYPMTCTLAKKTYSKITAFLS 576
           +  HL LP   N     ++LP SP      T+ +  + K+   L+
Sbjct: 340 DLNHLKLPITENIHQEVLSLPISP------TMKENDFKKVADILN 378


>4R7O-A nrPDB
          Length = 292

 Score = 31.6 bits (70), Expect = 1.7,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 29/163 (17%)

Query: 83  ELENSIEDNFQGLELQLLQDSQMNDKLETSIDEIANIQGMVQDTLSSEI------SKFQI 136
           +L   ++ ++  L++QL +D Q+    +T++D   N  G V+D   SEI      S F  
Sbjct: 37  DLVKKMKADYLELDIQLTKDGQLIAMHDTAVDRTTNGTGEVRDKTLSEIKSLDAGSWFNK 96

Query: 137 RLSESANELIVKKQMYVNNKKISLKISEATILITKVVRILE--LSSKCQELI--TERKFF 192
              E A      KQ YV  K  +L+      +  K  R ++  + +K  ++    E K  
Sbjct: 97  AYPEKA------KQEYVGQKVPTLE-----EIFQKYGRSMKYYIETKSPDVYPGMEEKLL 145

Query: 193 KVL-------QNLDSLEKLYLQEFKNYNFQFLIEIYNSIPFLQ 228
            +L       QN+ S  ++ +Q F   + + +  I  +IP +Q
Sbjct: 146 ALLEKYNLIGQNMSS-SRVMIQSFSKDSLKKIHSINKNIPLVQ 187


>6C96-A nrPDB
          Length = 825

 Score = 31.6 bits (70), Expect = 1.8,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 11/127 (8%)

Query: 574 FLSIFYRHELHTLNNILVKTMDDIFNDIVNKKIRSKL--ESTSREEIAQILVNLDYFI-I 630
           F  ++   EL+ + N+L+  + D FNDI   K +S L  + T+ +    +L +      I
Sbjct: 300 FFIVYLSIELYFIMNLLLAVVFDTFNDIEKHKFKSLLLHKRTAIQHAYGLLASQRRPAGI 359

Query: 631 AAKEFSNFMTRENILQNPDMEIRLSSIKYLAESRKLAETKLIELIDSKISDILETIEIDW 690
           + ++F   M        P M  R   + + A ++  + T L+ L D    DI E   + W
Sbjct: 360 SYRQFEGLMR----FYKPRMSARERFLTFKALNQ--SNTPLLSLKD--FYDIYEVAALQW 411

Query: 691 QITEVRQ 697
           +    RQ
Sbjct: 412 KAKRNRQ 418


>5C9H-A nrPDB
          Length = 303

 Score = 31.6 bits (70), Expect = 1.8,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 30/157 (19%)

Query: 129 SEISK-FQIRLSESANELIVKKQMYVNNKKISLKISEATILITKVVRILELSSKCQELIT 187
           SEI K FQ ++ +      ++ + ++N+ KI     +  I  T +      +  CQE   
Sbjct: 37  SEIKKGFQFKVIQEK----LQGRQFINSDKIKPDHPQTIIKKTLLKEYQSKNFSCQE--- 89

Query: 188 ERKFFKVLQNLDSLEKLYLQEFKNYNFQFLIEIYNSIPFLQKVTKDECINLIR--NSLNL 245
           ER  F     L+  EK+ +Q F N NF +L++ +  +P   +  K +   +++  N  N 
Sbjct: 90  ERDLF-----LEFTEKI-VQNFHNINFNYLLKKFCKLPENYQSLKSQVKQIVQSENKANQ 143

Query: 246 NLGKNLIKVGQEFVAIYENELLPQWLETRSKMKLTNF 282
              +NL      F ++Y+ E+        S  ++TNF
Sbjct: 144 QSCENL------FNSLYDTEI--------SYKQITNF 166


>6I3U-A nrPDB
          Length = 615

 Score = 31.6 bits (70), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 823 MELKQCIELLKTQGKDYNEPEIRLRKYSRIRQEDAALLLSKIQHFVSSVEGANGDD 878
           M+++  +ELL +    Y  P +R    +R+RQ D   LL  +   V +++  N DD
Sbjct: 93  MDVEDSLELLSSH---YTNPTVRRYAVARLRQADDEDLLMYLLQLVQALKYENFDD 145


>4UMK-A nrPDB
          Length = 240

 Score = 31.2 bits (69), Expect = 2.4,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 12/97 (12%)

Query: 107 DKLETSIDEIANIQGMVQDTLSSEISKFQIRLSESANELIVKKQMYVNNKKISLKISEAT 166
           D  +  + E+A I+ + ++ L+       + L+ S  EL+   QM    +++S  + ++ 
Sbjct: 108 DIEQEKMREVALIENIQREDLNP------LELARSYKELLESYQM--TQEELSKIVKKSR 159

Query: 167 ILITKVVRILELSSKCQELITERKFF----KVLQNLD 199
             +  ++R+L LSSK Q  + E K      KVL  LD
Sbjct: 160 AHVANIMRLLTLSSKVQNALLEEKITSGHAKVLVGLD 196


>6CPU-A nrPDB
          Length = 571

 Score = 30.8 bits (68), Expect = 2.9,   Method: Composition-based stats.
 Identities = 88/389 (22%), Positives = 159/389 (40%), Gaps = 101/389 (25%)

Query: 374 AHDVSTDDPFTQSLSLHFLQDYFLK-ILGFLLYDINLNKATEFI-LVDNNYNSTNEFWD- 430
           AH++S DD       ++ + DY +K + GF   +I LN+   FI +V + Y + N F + 
Sbjct: 222 AHNLSNDDLV---YCVYLMIDYAIKQVEGF--DNIPLNELLAFIFIVRDTYKNGNPFHNF 276

Query: 431 -----------GLMDRLS--PYLSYFI-DEKLKTEEDMIKLKDFLCIYVAILENF---KL 473
                        + RL   P    F+ D KL    D  ++ D   + +A+  N    K 
Sbjct: 277 RHAVDVLQACFHFLIRLGSLPKFKQFVEDPKL----DYTEVHDKHTVLIALQNNSSEEKA 332

Query: 474 NIEPLYKILVSIFEKFCSVSLRAFDDEFQI-------LLNDDDFMPLSINDKTLYEKVLK 526
           ++ P+  + + +      V      ++F I       LL +D  +  S +      KVL+
Sbjct: 333 SLNPIQTLGLLVAALGHDVGHPGTTNDFMIKFSAPTALLYNDRSVLESYHASLFINKVLR 392

Query: 527 ICWMKEGEHLSLPDPTNGEPFAVTLPFSPLYPMTCTLAKKTYSKITAFLSIFYRHELHTL 586
           ICW         PD                  +TCT+ +K+   I + +          +
Sbjct: 393 ICW---------PD-----------------LLTCTIEEKSELTIRSLI----------I 416

Query: 587 NNILVKTMDDIFNDIVN--KKIRSKLESTSREEIAQILVNLDYFIIAAKEFSNFMTRENI 644
           ++IL   M +  N+ VN  K  ++  E  + +   +++  L   +I   + SN +TR   
Sbjct: 417 SSILATDMGE-HNEYVNRLKSFKTHNEILNHDNTVKLISAL---LIKCADISN-VTR--- 468

Query: 645 LQNPDMEIRLSSIKYLAESRKLAETKLIELIDSKISDILETIEIDW--------QITEVR 696
                  +R+S+   +  SR+ AE +L++ +  K  D+  T ++ +        +I E++
Sbjct: 469 ------PLRVSAQWAMVLSREFAEVELLKSVIKKDIDLDFTKDLTYDDVPHELREILEIQ 522

Query: 697 QDPDI---SIIDLAQFLEMMFASTLQNLP 722
             PDI    I  +  F E +F S    LP
Sbjct: 523 --PDIHKGQIFFINLFAENLFNSVSDLLP 549


>5NIL-D nrPDB
          Length = 371

 Score = 30.4 bits (67), Expect = 3.3,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 8/55 (14%)

Query: 804 GVDAPTLFENNIKSLEATFMELKQCIELLKTQGKDYNEPEIRLRKYSRIRQEDAA 858
           GV  P   EN IK +EAT MEL+          +   E E++L + +  RQ+  A
Sbjct: 90  GVIDPEQAENQIKEVEATLMELR--------AQRQQAEAELKLARVTYSRQQRLA 136


>2GDR-A nrPDB
          Length = 202

 Score = 30.4 bits (67), Expect = 4.0,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)

Query: 200 SLEKLYLQEFKNYNFQFLIEIYNSI-PFLQKVTKDECINLIRNSLNLNLGK 249
           S E+ +LQ++ N+      E++ S  P     + DE  N +R SLN  LG+
Sbjct: 88  SFERYHLQQWLNF---ISSELHKSFSPLFNPASSDEWKNAVRQSLNTRLGQ 135


>5OWV-A nrPDB
          Length = 732

 Score = 30.0 bits (66), Expect = 5.1,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 7/98 (7%)

Query: 122 MVQDTLSSEISKFQIRLSESANELIVKKQM--YVNNKKISLKISEATILITKVVRILELS 179
           +V   L+S +SKF I L+++  +L+ KK +   +   K SLK S    L   +V  ++  
Sbjct: 341 LVHCLLNSRLSKFLIVLTKA--DLLSKKDLEEVIVYTKESLK-SRLVDLDENLVEKIDFL 397

Query: 180 SKCQELITERKFFKVLQNLDSLEKLYLQEFKNYNFQFL 217
               ++ ++  F+K L + +SL+K  +QEF+NY F  L
Sbjct: 398 CVSAKMASD--FYKGLASKESLQKSGMQEFENYLFNEL 433


>2YK0-A nrPDB
          Length = 790

 Score = 29.6 bits (65), Expect = 5.9,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 28/54 (51%)

Query: 29  TERAVLNNESTDAVKHEPALGQNDVFDLDPLSFDKWVPFLRRALDKNQLDPVID 82
           T R +  + S +  K E  L + ++ D  P +FD  + +LRR   KN+L   ++
Sbjct: 481 TNRGICIHNSNNKNKGENDLNKINIKDKSPTTFDVDMIYLRRQYMKNELKSFVE 534


>5N28-B nrPDB
          Length = 444

 Score = 29.6 bits (65), Expect = 6.0,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 32/165 (19%)

Query: 454 MIKLKDFLCIYVA----ILENFKLN-IEPLY----KILVSIFEKFCSVSLRAFDDEFQ-- 502
           M+K +D +C+Y A    + EN  L  I PLY    + LV   ++  +V+L   ++  +  
Sbjct: 1   MVKYEDKICLYNAKGELVEENVPLEAISPLYNPTIQKLVKDIKRTVAVNLAGIENALKTG 60

Query: 503 -------ILLNDDDFMPLSINDKTLYEKVLKICWMKEGEHLSLPDPTNGEPFAVTLPFSP 555
                  ++      +P+  N +T+ E V K+  +   +  S+    +G+  AV LP   
Sbjct: 61  AVGGKACVIPGRTLDLPIVENAETIMEYVDKLLRISPDDDTSVKLINDGKQMAVQLPSKR 120

Query: 556 LYPMTCTLAKKTYSKITAFLSIFYRHELHTLNNILVKTMD-DIFN 599
           L             ++ A  SI   +    L   ++KT D D+F+
Sbjct: 121 L-------------EVAAEYSISMLNTAMALKEAIIKTFDVDMFD 152


>3F8T-A nrPDB
          Length = 506

 Score = 29.6 bits (65), Expect = 6.8,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 10/64 (15%)

Query: 830 ELLKTQGKDYNEPEIRLR-------KYSRIRQEDAALLLSKIQHFVSSVEGANGDDTSVM 882
           EL++T   D  EP +R R       +  RIR  D AL+   I+  V  V GA   + +++
Sbjct: 83  ELVRTVAPDV-EPRVRFRGLPHRFRRVERIRPMDGALI--SIEGVVREVRGAERLEHAIV 139

Query: 883 DSSS 886
           D+ S
Sbjct: 140 DTGS 143


>2R4G-A nrPDB
          Length = 267

 Score = 29.2 bits (64), Expect = 8.7,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 25/138 (18%)

Query: 147 VKKQMYVNNKKISLKISEATILITKVVRILELSSKCQELITERKFFKVLQNLDSLEKLYL 206
           ++ + ++N+ KI     +  I  T +      +  CQE   ER  F     L+  EK+ +
Sbjct: 13  LQGRQFINSDKIKPDHPQTIIKKTLLKEYQSKNFSCQE---ERDLF-----LEFTEKI-V 63

Query: 207 QEFKNYNFQFLIEIYNSIPFLQKVTKDECINLIR--NSLNLNLGKNLIKVGQEFVAIYEN 264
           Q F N NF +L++ +  +P   +  K +   +++  N  N    +NL      F ++Y+ 
Sbjct: 64  QNFHNINFNYLLKKFCKLPENYQSLKSQVKQIVQSENKANQQSCENL------FNSLYDT 117

Query: 265 ELLPQWLETRSKMKLTNF 282
           E+        S  ++TNF
Sbjct: 118 EI--------SYKQITNF 127


>2OUX-A nrPDB
          Length = 286

 Score = 28.9 bits (63), Expect = 9.5,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 31/55 (56%)

Query: 585 TLNNILVKTMDDIFNDIVNKKIRSKLESTSREEIAQILVNLDYFIIAAKEFSNFM 639
           +L +++V   D +  DI+N+++ S      +E++AQ + + D+  +   ++ + +
Sbjct: 190 SLRDLIVNDDDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHL 244


  Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
    Posted date:  Jan 3, 2023  9:05 PM
  Number of letters in database: 10,336,785
  Number of sequences in database:  36,641
  
Lambda     K      H
   0.319    0.135    0.379 

Lambda     K      H
   0.267   0.0432    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,012,754
Number of Sequences: 36641
Number of extensions: 1641059
Number of successful extensions: 4274
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 4252
Number of HSP's gapped (non-prelim): 64
length of query: 910
length of database: 10,336,785
effective HSP length: 106
effective length of query: 804
effective length of database: 6,452,839
effective search space: 5188082556
effective search space used: 5188082556
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.2 bits)