BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= P20646
(381 letters)
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
36,641 sequences; 10,336,785 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
1RPA-A nrPDB 712 0.0
1ND5-A nrPDB 582 e-167
5CDH-A nrPDB 111 4e-25
4JOD-A nrPDB 98 7e-21
2WNI-A nrPDB 37 0.012
2W6E-A nrPDB 30 2.0
2XND-A nrPDB 30 2.2
6GFF-I nrPDB 29 2.6
1SI4-B nrPDB 28 4.5
5Y6P-dy nrPDB 28 5.0
2EL7-A nrPDB 28 5.4
1BVU-A nrPDB 28 6.3
1NT4-A nrPDB 28 6.8
>1RPA-A nrPDB
Length = 342
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/342 (99%), Positives = 341/342 (99%)
Query: 32 KELKFVTLVFRHGDRGPIETFPNDPIKESSWPQGFGQLTKWGMGQHYELGSYIRRRYGRF 91
KELKFVTLVFRHGDRGPIETFPNDPIKESSWPQGFGQLTKWGMGQHYELGSYIRRRYGRF
Sbjct: 1 KELKFVTLVFRHGDRGPIETFPNDPIKESSWPQGFGQLTKWGMGQHYELGSYIRRRYGRF 60
Query: 92 LNNSYKHDQVYIRSTDVDRTLMSAMTNLAALFPPEGISIWNPRLLWQPIPVHTVSLSEDR 151
LNNSYKHDQVYIRSTDVDRTLMSAMTNLAALFPPEG SIWNPRLLWQPIPVHTVSLSEDR
Sbjct: 61 LNNSYKHDQVYIRSTDVDRTLMSAMTNLAALFPPEGNSIWNPRLLWQPIPVHTVSLSEDR 120
Query: 152 LLYLPFRDCPRFQELKSETLKSEEFLKRLQPYKSFIDTLPSLSGFEDQDLFEIWSRLYDP 211
LLYLPFRDCPRFQELKSETLKSEEFLKRLQPYKSFIDTLPSLSGFEDQDLFEIWSRLYDP
Sbjct: 121 LLYLPFRDCPRFQELKSETLKSEEFLKRLQPYKSFIDTLPSLSGFEDQDLFEIWSRLYDP 180
Query: 212 LYCESVHNFTLPTWATEDAMTKLKELSELSLLSLYGIHKQKEKSRLQGGVLVNEILKNMK 271
LYCESVHNFTLPTWATEDAMTKLKELSELSLLSLYGIHKQKEKSRLQGGVLVNEILKNMK
Sbjct: 181 LYCESVHNFTLPTWATEDAMTKLKELSELSLLSLYGIHKQKEKSRLQGGVLVNEILKNMK 240
Query: 272 LATQPQKARKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHIMELYQDNGGHFVEMYYR 331
LATQPQKARKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHIMELYQDNGGHFVEMYYR
Sbjct: 241 LATQPQKARKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHIMELYQDNGGHFVEMYYR 300
Query: 332 NETQNEPYPLTLPGCTHSCPLEKFAELLDPVIPQDWATECMG 373
NETQNEPYPLTLPGCTHSCPLEKFAELLDPVIPQDWATECMG
Sbjct: 301 NETQNEPYPLTLPGCTHSCPLEKFAELLDPVIPQDWATECMG 342
>1ND5-A nrPDB
Length = 354
Score = 582 bits (1500), Expect = e-167, Method: Compositional matrix adjust.
Identities = 288/349 (82%), Positives = 314/349 (89%)
Query: 32 KELKFVTLVFRHGDRGPIETFPNDPIKESSWPQGFGQLTKWGMGQHYELGSYIRRRYGRF 91
KELKFVTLVFRHGDR PI+TFP DPIKESSWPQGFGQLT+ GM QHYELG YIR+RY +F
Sbjct: 1 KELKFVTLVFRHGDRSPIDTFPTDPIKESSWPQGFGQLTQLGMEQHYELGEYIRKRYRKF 60
Query: 92 LNNSYKHDQVYIRSTDVDRTLMSAMTNLAALFPPEGISIWNPRLLWQPIPVHTVSLSEDR 151
LN SYKH+QVYIRSTDVDRTLMSAMTNLAALFPPEG+SIWNP LLWQPIPVHTV LSED+
Sbjct: 61 LNESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEGVSIWNPILLWQPIPVHTVPLSEDQ 120
Query: 152 LLYLPFRDCPRFQELKSETLKSEEFLKRLQPYKSFIDTLPSLSGFEDQDLFEIWSRLYDP 211
LLYLPFR+CPRFQEL+SETLKSEEF KRL PYK FI TL LSG QDLF IWS++YDP
Sbjct: 121 LLYLPFRNCPRFQELESETLKSEEFQKRLHPYKDFIATLGKLSGLHGQDLFGIWSKVYDP 180
Query: 212 LYCESVHNFTLPTWATEDAMTKLKELSELSLLSLYGIHKQKEKSRLQGGVLVNEILKNMK 271
LYCESVHNFTLP+WATED MTKL+ELSELSLLSLYGIHKQKEKSRLQGGVLVNEIL +MK
Sbjct: 181 LYCESVHNFTLPSWATEDTMTKLRELSELSLLSLYGIHKQKEKSRLQGGVLVNEILNHMK 240
Query: 272 LATQPQKARKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHIMELYQDNGGHFVEMYYR 331
ATQ +KLIMYSAHDTTVSGLQMALDVYNGLLPPYASCH+ ELY + G +FVEMYYR
Sbjct: 241 RATQIPSYKKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHLTELYFEKGEYFVEMYYR 300
Query: 332 NETQNEPYPLTLPGCTHSCPLEKFAELLDPVIPQDWATECMGTSNHQAS 380
NETQ+EPYPL LPGC+ SCPLE+FAEL+ PVIPQDW+TECM T++HQ +
Sbjct: 301 NETQHEPYPLMLPGCSPSCPLERFAELVGPVIPQDWSTECMTTNSHQGT 349
>5CDH-A nrPDB
Length = 336
Score = 111 bits (278), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 90/335 (26%), Positives = 146/335 (43%), Gaps = 21/335 (6%)
Query: 34 LKFVTLVFRHGDRGPIETFPNDPIKESSWPQGFGQLTKWGMGQHYELGSYIRRRYGR--- 90
+ F + RHGDR PI P W +G GQLT GM Q Y++G R++Y
Sbjct: 1 MVFAVDIIRHGDRTPIVALPT---VNYQWQEGLGQLTAEGMQQEYKMGVAFRKKYIEELH 57
Query: 91 FLNNSYKHDQVYIRSTDVDRTLMSAMTNLAALFPP---EGISIWNPRL--LWQPIPVHTV 145
L Y++ +Y+RSTD RTLMSA + L L+PP I L +QPIPV +
Sbjct: 58 LLPEHYEYGTIYVRSTDYARTLMSAQSLLMGLYPPGTGPSIPAGTSALPHAFQPIPVFSA 117
Query: 146 SLSEDRLLYLPFRDCPRFQELKSETLKSEEFLKRLQPYKSFIDTLPSLSGFEDQDLFEIW 205
D ++ R + ++ + E+ ++ K L+G + D E
Sbjct: 118 PSKYDEVIIQQVDRKERKKLMEQYVFSTREWQQKNNELKDKYPLWSRLTGI-NIDTLEDL 176
Query: 206 SRLYDPLYCESVHNFTLPTWATEDAMTKLKELSELSLLSLYGIHKQKEKSRLQGGVLVNE 265
+ LY +HN +P + + + +E + ++ K ++ + + L+
Sbjct: 177 ETVGHTLYVHQIHNAPMPEGLASNDIETIINSAEWAFMAQ---EKPQQIANVYSSKLMTN 233
Query: 266 ILKNMKLATQPQKARKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHIMELYQDNGGHF 325
I + + + K ++ SAHDTT++ + L PPYAS LY DNG +
Sbjct: 234 IADYLNSGSMKKSKLKYVLLSAHDTTIASVLSFLGAPLEKSPPYASNVNFSLY-DNGAN- 291
Query: 326 VEMYYRNETQNEPYPLTLPGCTHS-CPLEKFAELL 359
YY + P+ +P C S C L++ L+
Sbjct: 292 ---YYTVKITYNGNPVLIPACGGSVCELQQLVNLV 323
>4JOD-A nrPDB
Length = 396
Score = 97.8 bits (242), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 109/378 (28%), Positives = 164/378 (43%), Gaps = 83/378 (21%)
Query: 33 ELKFVTLVFRHGDRGPIETFP-------------------------------------ND 55
+LK V +VFRHG R P++ P +
Sbjct: 17 KLKMVQVVFRHGARSPLKPLPLEEQVEWNPQLLEVPPQTQFDYTVTNLAGGPKPYSPYDS 76
Query: 56 PIKESSWPQGF--GQLTKWGMGQHYELGSYIRRRYGR---FLNNSYKHDQVYIRSTDVDR 110
E++ G GQLTK GM Q + LG +R+ Y FL+ ++ +V+IRST++ R
Sbjct: 77 QYHETTLKGGMFAGQLTKVGMQQMFALGERLRKNYVEDIPFLSPTFNPQEVFIRSTNIFR 136
Query: 111 TLMSAMTNLAALFP--PEGISIWNPRLLWQPIPVHTVSLSEDRLLYLPFRDCPRFQELKS 168
L S LA LF EG PI +HT ++ +LY ++ C ++
Sbjct: 137 NLESTRCLLAGLFQCQKEG-----------PIIIHTDE-ADSEVLYPNYQSCWSLRQRTR 184
Query: 169 ETLKSEEFLKRLQPYKSF-IDTLPSLSGFEDQDLFEIWSRLYDPLYCESVHNFTLPTWAT 227
++ LQP S + + G + D + + L D + E HN LP+
Sbjct: 185 GRRQT----ASLQPGISEDLKKVKDRMGIDSSDKVDFFI-LLDNVAAEQAHN--LPSCPM 237
Query: 228 EDAMTKLKELSELSLLSLYGIHKQKEKSRLQGGV------LVNEILKNMKLATQPQKARK 281
++ E + SLY + K+ +S LQ V L + +LK M AT P K RK
Sbjct: 238 LKRFARMIEQRAVDT-SLYILPKEDRES-LQMAVGPFLHILESNLLKAMDSATAPDKIRK 295
Query: 282 LIMYSAHDTTVSGLQMALDVYNGLLPPYASCHIMELYQ--DNGGHFVEMYYRNETQNEPY 339
L +Y+AHD T L M L +++ PP+A MELYQ ++ FV++YY + Q
Sbjct: 296 LYLYAAHDVTFIPLLMTLGIFDHKWPPFAVDLTMELYQHLESKEWFVQLYYHGKEQ---- 351
Query: 340 PLTLP-GCTHS-CPLEKF 355
+P GC CPL+ F
Sbjct: 352 ---VPRGCPDGLCPLDMF 366
>2WNI-A nrPDB
Length = 418
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 72/358 (20%), Positives = 137/358 (38%), Gaps = 85/358 (23%)
Query: 44 GDRGPIETFPNDPIKESSWPQGFGQLTKWGM----------GQHYELGSYIRRRYGRFLN 93
G+R IE P E W G+LT G GQHY R+ G
Sbjct: 33 GNREAIEAATGRPWTE--WTTHDGELTGHGYAAVVNKGREEGQHY-------RQLGLLQA 83
Query: 94 NSYKHDQVYIRSTDVDRTLMSAMTNLAALFPPEGISIWNPRLLWQPI------------P 141
+ +Y+R++ + RT +A + FP G++I P+ P
Sbjct: 84 GCPTAESIYVRASPLQRTRATAQALVDGAFPGCGVAIHYANGDADPLFQTDKFAATQTDP 143
Query: 142 VHTVSLSEDRLLYLPFRD---CPRFQELKSETLKSEEFLK------RLQPYKSFIDTLPS 192
++ +++ L R P Q LK ++++ R++ KS T+
Sbjct: 144 ARQLAAVKEKAGDLAQRRQALAPTIQLLKQAVCQADKPCPIFDTPWRVEQSKSGKTTISG 203
Query: 193 LSGFEDQDLFEIWSRLYDPLYCESVHNFTLPTWATEDAMTKLKELSELSLL--------- 243
LS + + + + L N L ++ A K+ + S+++ L
Sbjct: 204 LS---------VMANMVETLRLGWSENLPL----SQLAWGKIAQASQITALLPLLTENYD 250
Query: 244 ----SLYGIHKQKEKSRLQGGVLVNEILKNMKLATQPQKARKLIMYSAHDTTVSGLQMAL 299
LY K +G VL+N +L +K P + ++ AHDT ++ ++ +
Sbjct: 251 LSNDVLYTAQK-------RGSVLLNAMLDGVKPEASPNV--RWLLLVAHDTNIAMVRTLM 301
Query: 300 DV-------YNGLLPPYASCHIMELYQD--NGGHFVEMYYRNETQNEPYPLTLPGCTH 348
+ G +PP +S ++E ++D +G ++ +Y++ + ++ L P H
Sbjct: 302 NFSWQLPGYSRGNIPPGSSL-VLERWRDAKSGERYLRVYFQAQGLDDLRRLQTPDAQH 358
>2W6E-A nrPDB
Length = 553
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 306 LPPYASCHIMELYQDNGGHFVEMY 329
L PY+ C + E ++DNG H + +Y
Sbjct: 288 LAPYSGCSMGEYFRDNGKHALIIY 311
>2XND-A nrPDB
Length = 492
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 306 LPPYASCHIMELYQDNGGHFVEMY 329
L PY+ C + E ++DNG H + +Y
Sbjct: 227 LAPYSGCSMGEYFRDNGKHALIIY 250
>6GFF-I nrPDB
Length = 618
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 16/97 (16%)
Query: 134 RLLWQPIPVHTVSLSEDRLLYL---PFRDCPRFQELK--SETL-----KSEEFLKRLQPY 183
RLL + +HT+SL+E+ L L FRD P ++L S L + E L RL
Sbjct: 124 RLLGEAPSLHTLSLAENSLTRLTRHTFRDMPALEQLDLHSNVLMDIEDGAFEGLPRLTHL 183
Query: 184 KSFIDTLPSLSGFEDQDLFEIWSRLYDPLYCESVHNF 220
++L +S F Q L R+ D L C S+ F
Sbjct: 184 NLSRNSLTCISDFSLQQL-----RVLD-LSCNSIEAF 214
>1SI4-B nrPDB
Length = 146
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 226 ATEDAMTKLKEL----SELSLLSLYGIHKQKEKSRLQGGVLVNEILKNMKLATQPQKARK 281
A D + L L S+LS L +H E RL G VLV + +N PQ
Sbjct: 70 AFSDGLAHLDNLKGTFSQLSELHCDKLHVDPENFRLLGNVLVCVLARNFGKEFTPQ---- 125
Query: 282 LIMYSAHDTTVSGLQMAL 299
M +A+ V+G+ AL
Sbjct: 126 --MQAAYQKVVAGVANAL 141
>5Y6P-dy nrPDB
Length = 352
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Query: 173 SEEFLKRLQPYKSFIDTL-----PSLSGFEDQDL--FEIWSRLYDPLY 213
S+ +K Y +DTL P++SG ED+DL + +W +++ Y
Sbjct: 40 SKAVIKMTGDYGITLDTLLYHPTPTISGVEDKDLICYSVWKQVFGNAY 87
>2EL7-A nrPDB
Length = 337
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 101 VYIRSTDVDRTLMSAMTNLAALFPPEGISIWNPRLLWQPIPVHTVSLSEDRLLYLPFRDC 160
Y ST RT +A+ N+AA PE ++++ + +P HT LS P D
Sbjct: 52 AYDPSTLAQRTFEAALVNIAAGLDPEKVTLF----VQSHVPEHT-ELSWVFTTLTPLGDL 106
Query: 161 PRFQELKSETLKSE 174
R + K + K E
Sbjct: 107 TRMTQFKDKASKQE 120
>1BVU-A nrPDB
Length = 418
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 213 YCESVHNFTLPTWATEDAMTKLKELSELSLLSLYGIHKQKEKSRLQGG--VLVNEILKNM 270
Y E V N T W E+ KL + + +Y HK+K + V V+ + + M
Sbjct: 351 YFEWVQNITGDYWTVEETRAKLDKKMTKAFWDVYNTHKEKNINMRDAAYVVAVSRVYQAM 410
Query: 271 K 271
K
Sbjct: 411 K 411
>1NT4-A nrPDB
Length = 391
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 78/389 (20%), Positives = 139/389 (35%), Gaps = 64/389 (16%)
Query: 33 ELKFVTLVFRHGDRGPIETFPNDPIKESSWPQGF-------GQLTKWGMGQHYELGSYIR 85
+L+ V ++ R R P+ N + E S P + GQLT G +G Y+R
Sbjct: 8 QLQQVLMMSRANLRAPLAN--NGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMR 65
Query: 86 RRYGRFLNNSYKHDQ------VYIRSTDVDRTLMSAMTNLAALFPPEGISIWNPRLLWQP 139
K + VY + + RT+ +A + FP I + + +
Sbjct: 66 EWLAE--QGMVKSGECPPPYTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTM 123
Query: 140 IPVHTVSLSEDRLLYLPFRDCPRFQEL-KSETLKSEEFLKRLQPYK-----------SFI 187
P +++D + +EL K + S + L+++ YK S +
Sbjct: 124 DPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYQLLEKIVNYKDSPACKEKQQCSLV 183
Query: 188 DTLPSLSGFEDQDL-----FEIWSRLYDPLYCESVHNFTLP--TWATEDAMTKLKELSEL 240
D + S Q+ ++ + L D + F + W + + K LS+L
Sbjct: 184 DGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVLSKL 243
Query: 241 SLLSLYGIHKQKEKSRLQGGVLVNEILKNMKLATQPQKARKLIMYSAHDTTVSGLQMALD 300
+ E +R LV+ I K L T A K+ + HD+ ++ L ALD
Sbjct: 244 KNGYQDSLFTSPEVARNVAKPLVSYIDK--ALVTDRTSAPKITVLVGHDSNIASLLTALD 301
Query: 301 VYNGLL------PPYASCHIMELYQDNGGHF----VEMYYRNETQ------------NEP 338
L P + + + D+ + +E Y++ Q +
Sbjct: 302 FKPYQLHDQNERTPIGGKIVFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQR 361
Query: 339 YPLTLPGCTHS----CPLEKFAELLDPVI 363
L L GC CP++KF +L+ +
Sbjct: 362 VTLELSGCPIDADGFCPMDKFDSVLNEAV 390
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
1RPA-A nrPDB 590 e-169
1ND5-A nrPDB 566 e-162
5CDH-A nrPDB 416 e-117
4JOD-A nrPDB 330 5e-91
Sequences not found previously or not previously below threshold:
1NT4-A nrPDB 52 4e-07
2WNI-A nrPDB 52 5e-07
1DKL-A nrPDB 46 4e-05
1QFX-A nrPDB 42 5e-04
1SK9-A nrPDB 40 0.002
3K4P-A nrPDB 36 0.024
5LS6-A nrPDB 35 0.052
6DDT-A nrPDB 31 0.70
5HVM-A nrPDB 31 0.75
2XND-A nrPDB 31 1.3
2W6E-A nrPDB 31 1.3
1PV1-A nrPDB 30 2.3
5K4B-A nrPDB 29 2.9
5LQZ-A nrPDB 29 3.8
6MJP-C nrPDB 29 4.2
4NRS-A nrPDB 29 4.4
>1RPA-A nrPDB
Length = 342
Score = 590 bits (1521), Expect = e-169, Method: Composition-based stats.
Identities = 341/342 (99%), Positives = 341/342 (99%)
Query: 32 KELKFVTLVFRHGDRGPIETFPNDPIKESSWPQGFGQLTKWGMGQHYELGSYIRRRYGRF 91
KELKFVTLVFRHGDRGPIETFPNDPIKESSWPQGFGQLTKWGMGQHYELGSYIRRRYGRF
Sbjct: 1 KELKFVTLVFRHGDRGPIETFPNDPIKESSWPQGFGQLTKWGMGQHYELGSYIRRRYGRF 60
Query: 92 LNNSYKHDQVYIRSTDVDRTLMSAMTNLAALFPPEGISIWNPRLLWQPIPVHTVSLSEDR 151
LNNSYKHDQVYIRSTDVDRTLMSAMTNLAALFPPEG SIWNPRLLWQPIPVHTVSLSEDR
Sbjct: 61 LNNSYKHDQVYIRSTDVDRTLMSAMTNLAALFPPEGNSIWNPRLLWQPIPVHTVSLSEDR 120
Query: 152 LLYLPFRDCPRFQELKSETLKSEEFLKRLQPYKSFIDTLPSLSGFEDQDLFEIWSRLYDP 211
LLYLPFRDCPRFQELKSETLKSEEFLKRLQPYKSFIDTLPSLSGFEDQDLFEIWSRLYDP
Sbjct: 121 LLYLPFRDCPRFQELKSETLKSEEFLKRLQPYKSFIDTLPSLSGFEDQDLFEIWSRLYDP 180
Query: 212 LYCESVHNFTLPTWATEDAMTKLKELSELSLLSLYGIHKQKEKSRLQGGVLVNEILKNMK 271
LYCESVHNFTLPTWATEDAMTKLKELSELSLLSLYGIHKQKEKSRLQGGVLVNEILKNMK
Sbjct: 181 LYCESVHNFTLPTWATEDAMTKLKELSELSLLSLYGIHKQKEKSRLQGGVLVNEILKNMK 240
Query: 272 LATQPQKARKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHIMELYQDNGGHFVEMYYR 331
LATQPQKARKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHIMELYQDNGGHFVEMYYR
Sbjct: 241 LATQPQKARKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHIMELYQDNGGHFVEMYYR 300
Query: 332 NETQNEPYPLTLPGCTHSCPLEKFAELLDPVIPQDWATECMG 373
NETQNEPYPLTLPGCTHSCPLEKFAELLDPVIPQDWATECMG
Sbjct: 301 NETQNEPYPLTLPGCTHSCPLEKFAELLDPVIPQDWATECMG 342
>1ND5-A nrPDB
Length = 354
Score = 566 bits (1458), Expect = e-162, Method: Composition-based stats.
Identities = 288/349 (82%), Positives = 314/349 (89%)
Query: 32 KELKFVTLVFRHGDRGPIETFPNDPIKESSWPQGFGQLTKWGMGQHYELGSYIRRRYGRF 91
KELKFVTLVFRHGDR PI+TFP DPIKESSWPQGFGQLT+ GM QHYELG YIR+RY +F
Sbjct: 1 KELKFVTLVFRHGDRSPIDTFPTDPIKESSWPQGFGQLTQLGMEQHYELGEYIRKRYRKF 60
Query: 92 LNNSYKHDQVYIRSTDVDRTLMSAMTNLAALFPPEGISIWNPRLLWQPIPVHTVSLSEDR 151
LN SYKH+QVYIRSTDVDRTLMSAMTNLAALFPPEG+SIWNP LLWQPIPVHTV LSED+
Sbjct: 61 LNESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEGVSIWNPILLWQPIPVHTVPLSEDQ 120
Query: 152 LLYLPFRDCPRFQELKSETLKSEEFLKRLQPYKSFIDTLPSLSGFEDQDLFEIWSRLYDP 211
LLYLPFR+CPRFQEL+SETLKSEEF KRL PYK FI TL LSG QDLF IWS++YDP
Sbjct: 121 LLYLPFRNCPRFQELESETLKSEEFQKRLHPYKDFIATLGKLSGLHGQDLFGIWSKVYDP 180
Query: 212 LYCESVHNFTLPTWATEDAMTKLKELSELSLLSLYGIHKQKEKSRLQGGVLVNEILKNMK 271
LYCESVHNFTLP+WATED MTKL+ELSELSLLSLYGIHKQKEKSRLQGGVLVNEIL +MK
Sbjct: 181 LYCESVHNFTLPSWATEDTMTKLRELSELSLLSLYGIHKQKEKSRLQGGVLVNEILNHMK 240
Query: 272 LATQPQKARKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHIMELYQDNGGHFVEMYYR 331
ATQ +KLIMYSAHDTTVSGLQMALDVYNGLLPPYASCH+ ELY + G +FVEMYYR
Sbjct: 241 RATQIPSYKKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHLTELYFEKGEYFVEMYYR 300
Query: 332 NETQNEPYPLTLPGCTHSCPLEKFAELLDPVIPQDWATECMGTSNHQAS 380
NETQ+EPYPL LPGC+ SCPLE+FAEL+ PVIPQDW+TECM T++HQ +
Sbjct: 301 NETQHEPYPLMLPGCSPSCPLERFAELVGPVIPQDWSTECMTTNSHQGT 349
>5CDH-A nrPDB
Length = 336
Score = 416 bits (1069), Expect = e-117, Method: Composition-based stats.
Identities = 90/335 (26%), Positives = 146/335 (43%), Gaps = 21/335 (6%)
Query: 34 LKFVTLVFRHGDRGPIETFPNDPIKESSWPQGFGQLTKWGMGQHYELGSYIRRRYGR--- 90
+ F + RHGDR PI P W +G GQLT GM Q Y++G R++Y
Sbjct: 1 MVFAVDIIRHGDRTPIVALPT---VNYQWQEGLGQLTAEGMQQEYKMGVAFRKKYIEELH 57
Query: 91 FLNNSYKHDQVYIRSTDVDRTLMSAMTNLAALFPP---EGISIWNPRL--LWQPIPVHTV 145
L Y++ +Y+RSTD RTLMSA + L L+PP I L +QPIPV +
Sbjct: 58 LLPEHYEYGTIYVRSTDYARTLMSAQSLLMGLYPPGTGPSIPAGTSALPHAFQPIPVFSA 117
Query: 146 SLSEDRLLYLPFRDCPRFQELKSETLKSEEFLKRLQPYKSFIDTLPSLSGFEDQDLFEIW 205
D ++ R + ++ + E+ ++ K L+G + D E
Sbjct: 118 PSKYDEVIIQQVDRKERKKLMEQYVFSTREWQQKNNELKDKYPLWSRLTGI-NIDTLEDL 176
Query: 206 SRLYDPLYCESVHNFTLPTWATEDAMTKLKELSELSLLSLYGIHKQKEKSRLQGGVLVNE 265
+ LY +HN +P + + + +E + ++ K ++ + + L+
Sbjct: 177 ETVGHTLYVHQIHNAPMPEGLASNDIETIINSAEWAFMAQ---EKPQQIANVYSSKLMTN 233
Query: 266 ILKNMKLATQPQKARKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHIMELYQDNGGHF 325
I + + + K ++ SAHDTT++ + L PPYAS LY DNG +
Sbjct: 234 IADYLNSGSMKKSKLKYVLLSAHDTTIASVLSFLGAPLEKSPPYASNVNFSLY-DNGAN- 291
Query: 326 VEMYYRNETQNEPYPLTLPGCTHS-CPLEKFAELL 359
YY + P+ +P C S C L++ L+
Sbjct: 292 ---YYTVKITYNGNPVLIPACGGSVCELQQLVNLV 323
>4JOD-A nrPDB
Length = 396
Score = 330 bits (847), Expect = 5e-91, Method: Composition-based stats.
Identities = 112/399 (28%), Positives = 169/399 (42%), Gaps = 85/399 (21%)
Query: 33 ELKFVTLVFRHGDRGPIETFP-------------------------------------ND 55
+LK V +VFRHG R P++ P +
Sbjct: 17 KLKMVQVVFRHGARSPLKPLPLEEQVEWNPQLLEVPPQTQFDYTVTNLAGGPKPYSPYDS 76
Query: 56 PIKESSWPQGF--GQLTKWGMGQHYELGSYIRRRYGR---FLNNSYKHDQVYIRSTDVDR 110
E++ G GQLTK GM Q + LG +R+ Y FL+ ++ +V+IRST++ R
Sbjct: 77 QYHETTLKGGMFAGQLTKVGMQQMFALGERLRKNYVEDIPFLSPTFNPQEVFIRSTNIFR 136
Query: 111 TLMSAMTNLAALFP--PEGISIWNPRLLWQPIPVHTVSLSEDRLLYLPFRDCPRFQELKS 168
L S LA LF EG PI +HT ++ +LY ++ C ++
Sbjct: 137 NLESTRCLLAGLFQCQKEG-----------PIIIHTDE-ADSEVLYPNYQSCWSLRQRTR 184
Query: 169 ETLKSEEFLKRLQPYKSF-IDTLPSLSGFEDQDLFEIWSRLYDPLYCESVHNFTLPTWAT 227
LQP S + + G + D + + L D + E HN LP+
Sbjct: 185 G----RRQTASLQPGISEDLKKVKDRMGIDSSDKVDFFI-LLDNVAAEQAHN--LPSCPM 237
Query: 228 EDAMTKLKELSELSLLSLYGIHKQKEKSRLQGGV------LVNEILKNMKLATQPQKARK 281
++ E + SLY + K+ +S LQ V L + +LK M AT P K RK
Sbjct: 238 LKRFARMIEQRAVDT-SLYILPKEDRES-LQMAVGPFLHILESNLLKAMDSATAPDKIRK 295
Query: 282 LIMYSAHDTTVSGLQMALDVYNGLLPPYASCHIMELYQ--DNGGHFVEMYYRNETQNEPY 339
L +Y+AHD T L M L +++ PP+A MELYQ ++ FV++YY + Q
Sbjct: 296 LYLYAAHDVTFIPLLMTLGIFDHKWPPFAVDLTMELYQHLESKEWFVQLYYHGKEQ---- 351
Query: 340 PLTLP-GCTHS-CPLEKFAELLD--PVIPQDWATECMGT 374
+P GC CPL+ F + + P+ + C T
Sbjct: 352 ---VPRGCPDGLCPLDMFLNAMSVYTLSPEKYHALCSQT 387
>1NT4-A nrPDB
Length = 391
Score = 52.1 bits (123), Expect = 4e-07, Method: Composition-based stats.
Identities = 72/394 (18%), Positives = 128/394 (32%), Gaps = 68/394 (17%)
Query: 30 QAKELKFVTLVFRHGDRGPI-----ETFPNDPIKESSWPQGFGQLTKWGMGQHYELGSYI 84
+ +L+ V ++ R R P+ + P K W GQLT G +G Y+
Sbjct: 5 EGYQLQQVLMMSRANLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYM 64
Query: 85 RR--------RYGRFLNNSYKHDQVYIRSTDVDRTLMSAMTNLAALFPPEGISI------ 130
R + G VY + + RT+ +A + FP I +
Sbjct: 65 REWLAEQGMVKSGECPPPY----TVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKM 120
Query: 131 WNPRLLWQPIPVHTVSLSEDRLLYLPFRDCPRFQELKSETL------------KSEEFLK 178
+ P+ + ++ + ++ + Q S L E+
Sbjct: 121 GTMDPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYQLLEKIVNYKDSPACKEKQQC 180
Query: 179 RLQPYKS-FIDTLPSLSGFEDQDLFEIWSRLYDPLYCESVHNFTLPT--WATEDAMTKLK 235
L K+ F G + L D + F + W + + K
Sbjct: 181 SLVDGKNTFSAKYQQEPGVSGPLKVG--NSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWK 238
Query: 236 ELSELSLLSLYGIHKQKEKSRLQGGVLVNEILKNMKLATQPQKARKLIMYSAHDTTVSGL 295
LS+L + E +R LV+ I K + T A K+ + HD+ ++ L
Sbjct: 239 VLSKLKNGYQDSLFTSPEVARNVAKPLVSYIDKAL--VTDRTSAPKITVLVGHDSNIASL 296
Query: 296 QMALDVYNGLL------PPYASCHIMELYQDNGGHF----VEMYYRNETQ---------- 335
ALD L P + + + D+ + +E Y++ Q
Sbjct: 297 LTALDFKPYQLHDQNERTPIGGKIVFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQ 356
Query: 336 --NEPYPLTLPGCT----HSCPLEKFAELLDPVI 363
+ L L GC CP++KF +L+ +
Sbjct: 357 APAQRVTLELSGCPIDADGFCPMDKFDSVLNEAV 390
>2WNI-A nrPDB
Length = 418
Score = 51.7 bits (122), Expect = 5e-07, Method: Composition-based stats.
Identities = 63/350 (18%), Positives = 130/350 (37%), Gaps = 43/350 (12%)
Query: 44 GDRGPIETFPNDPIKESSWPQGFGQLTKWGMGQHYELGSYIRRRYGRF-LNNSYKH--DQ 100
G+R IE P E W G+LT G G + Y + L + +
Sbjct: 33 GNREAIEAATGRPWTE--WTTHDGELTGHGYAAVVNKGREEGQHYRQLGLLQAGCPTAES 90
Query: 101 VYIRSTDVDRTLMSAMTNLAALFPPEGISIWNPRLLWQPI-------PVHTVSLSEDRLL 153
+Y+R++ + RT +A + FP G++I P+ T + +
Sbjct: 91 IYVRASPLQRTRATAQALVDGAFPGCGVAIHYANGDADPLFQTDKFAATQTDPARQLAAV 150
Query: 154 YLPFRDCPRFQELKSETLK--SEEFLKRLQPYKSFIDTLP---SLSGFEDQDLFEIWSRL 208
D + ++ + T++ + + +P F S SG + + +
Sbjct: 151 KEKAGDLAQRRQALAPTIQLLKQAVCQADKPCPIFDTPWRVEQSKSGKTTISGLSVMANM 210
Query: 209 YDPLYCESVHNFTLPT--WATEDAMTKLKELSELSLLSLYGIHKQKEKSRLQGGVLVNEI 266
+ L N L W +++ L L + + ++ +G VL+N +
Sbjct: 211 VETLRLGWSENLPLSQLAWGKIAQASQITALLPLLTENYDLSNDVLYTAQKRGSVLLNAM 270
Query: 267 LKNMKLATQPQKARKLIMYSAHDTTVSGLQMAL-------DVYNGLLPPYASCHIMELYQ 319
L +K P + ++ AHDT ++ ++ + G +PP S ++E ++
Sbjct: 271 LDGVKPEASPN--VRWLLLVAHDTNIAMVRTLMNFSWQLPGYSRGNIPP-GSSLVLERWR 327
Query: 320 D--NGGHFVEMYYRNETQNEPYPLTLPGCTHSCPLEKFAELLDPVIPQDW 367
D +G ++ +Y++ + ++ L P H P++ Q+W
Sbjct: 328 DAKSGERYLRVYFQAQGLDDLRRLQTPDAQH------------PMLRQEW 365
>1DKL-A nrPDB
Length = 410
Score = 45.5 bits (106), Expect = 4e-05, Method: Composition-based stats.
Identities = 74/379 (19%), Positives = 118/379 (31%), Gaps = 67/379 (17%)
Query: 33 ELKFVTLVFRHGDRGPIETFP----NDPIKESSWPQGFGQLTKWGMGQHYELGSYIRRRY 88
+L+ V +V RHG R P + P +WP G LT G LG Y R+R
Sbjct: 7 KLESVVIVSRHGVRAPTKATQLMQDVTPDAWPTWPVKLGWLTPRGGELIAYLGHYQRQRL 66
Query: 89 GR--FLNNSYKHD--QVYIRSTDVDRTLMSAMTNLAALFPPEGISIWNPRLLWQPIPVHT 144
L QV I + +RT + A L P I++ P P+
Sbjct: 67 VADGLLAKKGCPQSGQVAIIADVDERTRKTGEAFAAGLAPDCAITVHTQADTSSPDPLFN 126
Query: 145 VSLS-----------EDRLL------YLPF--RDCPRFQELKS-----------ETLKSE 174
L D +L F F+EL+ + K +
Sbjct: 127 -PLKTGVCQLDNANVTDAILSRAGGSIADFTGHRQTAFRELERVLNFPQSNLCLKREKQD 185
Query: 175 EFLKRLQPYKSFIDTLPSLSGFEDQDLFEIWSRLYDPLYCESVHNFTLPTWATEDAMTKL 234
E Q S + + S L + + P W +
Sbjct: 186 ESCSLTQALPSELKVSADNVSLTGA--VSLASMLTEIFLLQQAQGMPEPGWGRITDSHQW 243
Query: 235 KELSELSLLSLYGIHKQKEKSRLQGGVLVNEILKNMKLATQPQKARK----------LIM 284
L L Y + + E +R + +L +K A P +K ++
Sbjct: 244 NTLLSLHNAQFYLLQRTPEVARSRA----TPLLDLIKTALTPHPPQKQAYGVTLPTSVLF 299
Query: 285 YSAHDTTVSGLQMALDVYNGLLP------PYASCHIMELYQ---DNGGHF--VEMYYRNE 333
+ HDT ++ L AL++ N LP P + E ++ DN ++ +
Sbjct: 300 IAGHDTNLANLGGALEL-NWTLPGQPDNTPPGGELVFERWRRLSDNSQWIQVSLVFQTLQ 358
Query: 334 TQNEPYPLTLPGCTHSCPL 352
+ PL+L L
Sbjct: 359 QMRDKTPLSLNTPPGEVKL 377
>1QFX-A nrPDB
Length = 460
Score = 41.7 bits (96), Expect = 5e-04, Method: Composition-based stats.
Identities = 72/407 (17%), Positives = 123/407 (30%), Gaps = 81/407 (19%)
Query: 27 DPGQAKELKFVTLVFRHGDRGPIETFPND---------PIKESSWPQGFGQLTKW----- 72
DP + E+ V +V RHG+R P + D I + + L W
Sbjct: 47 DPPTSCEVDQVIMVKRHGERYPSPSAGKDIEEALAKVYSINTTEYKGDLAFLNDWTYYVP 106
Query: 73 ---------------GMGQHYELGSYIRRRYGRFLNNSYKHDQVYIRSTDVDRTLMSAMT 117
G+ Y G+ + RYG N V S+ R + +A
Sbjct: 107 NECYYNAETTSGPYAGLLDAYNHGNDYKARYGHLWNGE---TVVPFFSSGYGRVIETARK 163
Query: 118 NLAALFPPEGISIWNPRLLWQPIPVHTVSLSEDRLLYLPFRDCPRFQELKSETLKSEEFL 177
F G + L + + L + T + +F
Sbjct: 164 FGEGFF---GYNYSTNAALN---IISESEVMGADSLTPTCDTDNDQTTCDNLTYQLPQFK 217
Query: 178 KRLQPYKSFIDTLPSLSGFEDQDLFEIWSRLYDPLYCESVHNFTLPTWATEDAMTKLKEL 237
S D++ + + ++ W +
Sbjct: 218 VAAARLNSQNPG----MNLTASDVYNLMV-----MASFELNARPFSNWINAFTQDEWVSF 268
Query: 238 SELSLLSLYGIHKQKEKSRLQ-GGVLVNEILKNMKLATQPQKARKLIMYSAHDTTVSGLQ 296
+ L+ Y +K+ G V N L + P++A L AHDT ++ +
Sbjct: 269 GYVEDLNYYYCAGPGDKNMAAVGAVYANASLTLLNQG--PKEAGSLFFNFAHDTNITPIL 326
Query: 297 MALDV--YNGLLP--------PYA----------------SCHIMELYQDNGGHFVEMYY 330
AL V N LP PY+ SC L + G +V +
Sbjct: 327 AALGVLIPNEDLPLDRVAFGNPYSIGNIVPMGGHLTIERLSCQATALSDE--GTYVRLVL 384
Query: 331 RNETQNEPYPLTLPGCTHSCPLEKFAELLDPVIPQDWATECMGTSNH 377
P+ G +SCPL + +L+ +P D+ T C ++++
Sbjct: 385 N--EAVLPFNDCTSGPGYSCPLANYTSILNKNLP-DYTTTCNVSASY 428
>1SK9-A nrPDB
Length = 439
Score = 39.8 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 62/321 (19%), Positives = 101/321 (31%), Gaps = 59/321 (18%)
Query: 33 ELKFVTLVFRHGDRGP--------------IETFPND------PIKESSWPQGFGQLTKW 72
+ V ++ RHG R P I+ D +K ++ G LT +
Sbjct: 45 RITLVQVLSRHGARYPTSSKSKKYKKLVTAIQANATDFKGKFAFLKTYNYTLGADDLTPF 104
Query: 73 GMGQHYELGSYIRRRYGRFLNNSYKHDQVYIRSTDVDRTLMSAMTNLAALFPPEGISIWN 132
G Q G +RY + L S +IR++ DR + S + + + +
Sbjct: 105 GEQQLVNSGIKFYQRY-KALARSVVP---FIRASGSDRVIASGEKFIEGFQQAK---LAD 157
Query: 133 PRLLWQPIPVHTVSLSEDRLLYLPFRD--CPRFQELKSETLKSEEFLKRLQPYKSFIDTL 190
P + P +V + E C +F+ + + F P
Sbjct: 158 PGATNRAAPAISVIIPESETFNNTLDHGVCTKFEASQLGDEVAANFTALFAPDI-RARAE 216
Query: 191 PSLSGFEDQDLFEIWSRLYDPLYCESVHNFTLPTWATEDAMTKLKELSEL-------SLL 243
L G D E L D ++V + +L +E SL
Sbjct: 217 KHLPGVTLTD--EDVVSLMDMCSFDTV--ARTSDASQLSPFCQLFTHNEWKKYNYLQSLG 272
Query: 244 SLYGIHKQKEKSRLQGGVLVNEILKNM-----------------KLATQPQKARKLIMYS 286
YG QG NE++ + AT P A + +S
Sbjct: 273 KYYGYGAGNPLGPAQGIGFTNELIARLTRSPVQDHTSTNSTLVSNPATFPLNATMYVDFS 332
Query: 287 AHDTTVSGLQMALDVYNGLLP 307
HD ++ + AL +YNG P
Sbjct: 333 -HDNSMVSIFFALGLYNGTEP 352
>3K4P-A nrPDB
Length = 444
Score = 36.3 bits (82), Expect = 0.024, Method: Composition-based stats.
Identities = 69/386 (17%), Positives = 111/386 (28%), Gaps = 79/386 (20%)
Query: 33 ELKFVTLVFRHGDRGP-----------IETFPNDP---------IKESSWPQGFGQLTKW 72
+ F ++ RHG R P IE + +K ++ G LT +
Sbjct: 49 RVTFAQVLSRHGARYPTDSKGKKYSALIEEIQQNATTFDGKYAFLKTYNYSLGADDLTPF 108
Query: 73 GMGQHYELGSYIRRRYGRFLNNSYKHDQVYIRSTDVDRTLMSAMTNLAALFPPEGI--SI 130
G + G +RY L + +IRS+ R + S + F +
Sbjct: 109 GEQELVNSGIKFYQRY-ESLTRNIVP---FIRSSGSSRVIASGKKFIEG-FQSTKLKDPR 163
Query: 131 WNPRLLWQPIPVHTVSLSEDRLLYLPFRDCPRFQELKSETLKSEEFLKRLQPYKSFIDTL 190
P I V S P C F++ + F P
Sbjct: 164 AQPGQSSPKIDVVISEASSSNNTLDP-GTCTVFEDSELADTVEANFTATFVPSIRQ-RLE 221
Query: 191 PSLSGFEDQDL-FEIWSRL--YDPLYCESVHNFTLPTWATEDAMTKLKELSELSLLSLYG 247
LSG D + +D + +V P + L L Y
Sbjct: 222 NDLSGVTLTDTEVTYLMDMCSFDTISTSTVDTKLSPFCDLF-THDEWINYDYLQSLKKYY 280
Query: 248 IH--------------KQKEKSRLQGGVLVNEILKNMKLATQPQKA-RKLIMYS--AHDT 290
H + +RL + ++ N L + P +Y+ +HD
Sbjct: 281 GHGAGNPLGPTQGVGYANELIARLTHSPVHDDTSSNHTLDSSPATFPLNSTLYADFSHDN 340
Query: 291 TVSGLQMALDVYNGLLP---------------------PYASCHIMELYQDNGGHFVEMY 329
+ + AL +YNG P P+AS +E+ Q E
Sbjct: 341 GIISILFALGLYNGTKPLSTTTVENITQTDGFSSAWTVPFASRLYVEMMQCQAEQ--EPL 398
Query: 330 YRNETQNEPYPLTLPGCTHSCPLEKF 355
R + PL H CP++
Sbjct: 399 VRVLVNDRVVPL------HGCPVDAL 418
>5LS6-A nrPDB
Length = 695
Score = 35.1 bits (79), Expect = 0.052, Method: Composition-based stats.
Identities = 39/207 (18%), Positives = 72/207 (34%), Gaps = 36/207 (17%)
Query: 162 RFQELKSETLKSEEFLKRLQPYKSFIDTLPSLSGFEDQDLFEIWSRLYDPLYCESVHNFT 221
R + L+ + ++E+ +R + ++ SL G + + +F
Sbjct: 56 RQKILERTEILNQEWKQRRIQPVHILTSVSSLRGTRECSVTSDL-------------DFP 102
Query: 222 LPTWA--TEDAMTKLKELSELSLLS----------LYGIHKQKEKSRLQGGVLVNEILKN 269
T +A+ + + S L L+ I ++ Q G + E++KN
Sbjct: 103 TQVIPLKTLNAVASVPIMYSWSPLQQNFMVEDETVLHNIPYMGDEVLDQDGTFIEELIKN 162
Query: 270 MKLATQPQKARKLIMYSAHDTTVSGLQMALDVYNGLLPP--YASCHIME----LYQDNG- 322
+ I +D L AL YN PP + S I E ++ D G
Sbjct: 163 YDGKVHGDRECGFI----NDEIFVELVNALGQYNESRPPRKFPSDKIFEAISSMFPDKGT 218
Query: 323 GHFVEMYYRNETQNEPYPLTLPGCTHS 349
++ Y+ TQ + P CT +
Sbjct: 219 AEELKEKYKELTQQQLPGALPPECTPN 245
>6DDT-A nrPDB
Length = 868
Score = 31.3 bits (69), Expect = 0.70, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 9/104 (8%)
Query: 49 IETFPNDPIKESSWPQGFGQLTKWGMGQHYELGSYIRRRYGRFLNNSYKHDQVYIRSTDV 108
+ D E+ WP+G G T + M + L ++ K +VY R+ +
Sbjct: 267 LVKIRKDVAVETWWPRGHGNQTGYNMTILFALDGGLKIE---------KAAKVYFRTVQL 317
Query: 109 DRTLMSAMTNLAALFPPEGISIWNPRLLWQPIPVHTVSLSEDRL 152
+ L+ F G+ I+ W P ++ DRL
Sbjct: 318 IEEGIKGSPGLSFYFKINGLPIFLKGSNWIPADSFQDKVTSDRL 361
>5HVM-A nrPDB
Length = 515
Score = 31.3 bits (69), Expect = 0.75, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 34/120 (28%), Gaps = 22/120 (18%)
Query: 107 DVDRTLMSAMTNLAAL-FPPEGISIWNPRLLWQPIPVHTVSLSEDRLLYLPFRDCPRFQE 165
D R +SA + L L P GI + P+
Sbjct: 213 DYTRHFLSACSRLLGLATTPNGIEFQGKVIACGAFPIGIDPEKF---------------- 256
Query: 166 LKSETLKSEEFLKRLQPYKSFIDTLPSLSGFEDQDLFEIWSRLYDPLYCESVHNFTLPTW 225
E LK E+ KR+ + + + G D + + L+ V P W
Sbjct: 257 --QEGLKKEKVQKRIAQLEQKFQGVKLMVGV---DRLDYIKGVPQKLHALEVFLSDHPEW 311
>2XND-A nrPDB
Length = 492
Score = 30.5 bits (67), Expect = 1.3, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 20/111 (18%)
Query: 224 TWATEDAMTKLKELSELSLLSLYGIHKQKEKSRLQ-----GGVLVNEILKNMKLATQPQK 278
T T A+ + + EK +L G + + + +K T
Sbjct: 155 TGKTSIAIDTIINQKRFN-------DGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADA 207
Query: 279 ARKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHIMELYQDNGGHFVEMY 329
+ I+ SA + + LQ L PY+ C + E ++DNG H + +Y
Sbjct: 208 MKYTIVVSATASDAAPLQY--------LAPYSGCSMGEYFRDNGKHALIIY 250
>2W6E-A nrPDB
Length = 553
Score = 30.5 bits (67), Expect = 1.3, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 20/111 (18%)
Query: 224 TWATEDAMTKLKELSELSLLSLYGIHKQKEKSRLQ-----GGVLVNEILKNMKLATQPQK 278
T T A+ + + EK +L G + + + +K T
Sbjct: 216 TGKTSIAIDTIINQKRFN-------DGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADA 268
Query: 279 ARKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHIMELYQDNGGHFVEMY 329
+ I+ SA + + LQ L PY+ C + E ++DNG H + +Y
Sbjct: 269 MKYTIVVSATASDAAPLQY--------LAPYSGCSMGEYFRDNGKHALIIY 311
>1PV1-A nrPDB
Length = 299
Score = 29.8 bits (65), Expect = 2.3, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 30 QAKELKFVTLVFRHGDRGPIETFPNDPIKESSWPQGFG---QLTKWGMGQHYELGSYIRR 86
QA + F + RG + NDP + QG G T+ QHY++ YI +
Sbjct: 74 QADKYGFAIVFPDTSPRG--DEVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHK 131
Query: 87 RYGRFLNNSYK 97
+ L++ +
Sbjct: 132 ELPQTLDSHFN 142
>5K4B-A nrPDB
Length = 368
Score = 29.4 bits (64), Expect = 2.9, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 14/111 (12%)
Query: 159 DCPRFQELKSETLKSEEFLKRLQPYKSFIDTLPSLSGFEDQDLFEIWSRLYDPLYCESVH 218
+ PR++ + SEE + +G L H
Sbjct: 173 NEPRYKFDEPNPFISEEEEGEVASVAYRYRKWDLNNGI--------------TLIARCEH 218
Query: 219 NFTLPTWATEDAMTKLKELSELSLLSLYGIHKQKEKSRLQGGVLVNEILKN 269
+ + E +K L+E G+ +++ +G VL NE+ N
Sbjct: 219 DAVMQGPNNETQFLTIKALNEWDSKLANGVEWRRKLDTQRGAVLANELRNN 269
>5LQZ-A nrPDB
Length = 510
Score = 29.0 bits (63), Expect = 3.8, Method: Composition-based stats.
Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 14/108 (12%)
Query: 224 TWATEDAMTKLKELSELSLLSLYGIHKQKEKSRLQGGVLV--NEILKNMKLATQPQKARK 281
T T A+ + + G + K+ + V + + + ++ Q +
Sbjct: 175 TGKTAVALDTILNQKRWN----DGNDESKKLYCVYVAVGQKRSTVAQLVQTLEQNDAMKY 230
Query: 282 LIMYSAHDTTVSGLQMALDVYNGLLPPYASCHIMELYQDNGGHFVEMY 329
I+ +A + + LQ L P+ +C I E ++DNG H + +Y
Sbjct: 231 SIVVAATASEAAPLQY--------LAPFTACAIAEWFRDNGKHALIVY 270
>6MJP-C nrPDB
Length = 191
Score = 28.6 bits (62), Expect = 4.2, Method: Composition-based stats.
Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 8/108 (7%)
Query: 237 LSELSLLSLYGIHKQKEKSRLQGGVLVNEILKNMKLATQPQKARKLIMYSAHDTTVSGLQ 296
L E + + GI + + L VL +L P + S +
Sbjct: 91 LQEWEITARRGILSKDQVLTLYDDVLAKNLL--------PDSGFDTLTTSEMSIQLKSRD 142
Query: 297 MALDVYNGLLPPYASCHIMELYQDNGGHFVEMYYRNETQNEPYPLTLP 344
D L P H + + H E+Y + + + E +P
Sbjct: 143 FWADKPVELRGPQFETHGQAMKGNFADHSAELYNQVQGRYETLTPLVP 190
>4NRS-A nrPDB
Length = 449
Score = 28.6 bits (62), Expect = 4.4, Method: Composition-based stats.
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 61 SWPQGFGQLTKWGMGQH---YELGSYIRRRYGRFLNNSYKHDQVYIRSTDVDR 110
W GFGQ W G Y +G + +F Y ++ ++ + +
Sbjct: 154 QWSGGFGQYVAWITGNQTIPYPVGDVTYDEFTQFAARFYNDSEIAPKANKLFK 206
Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta
Posted date: Jan 3, 2023 9:05 PM
Number of letters in database: 10,336,785
Number of sequences in database: 36,641
Lambda K H
0.306 0.124 0.331
Lambda K H
0.267 0.0385 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,573,602
Number of Sequences: 36641
Number of extensions: 521829
Number of successful extensions: 1284
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1250
Number of HSP's gapped (non-prelim): 40
length of query: 381
length of database: 10,336,785
effective HSP length: 99
effective length of query: 282
effective length of database: 6,709,326
effective search space: 1892029932
effective search space used: 1892029932
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 60 (27.8 bits)