BLASTP 2.2.23 [Feb-03-2010] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= P20443 (403 letters) Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta 36,641 sequences; 10,336,785 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 5W0P-A nrPDB 778 0.0 4J2Q-A nrPDB 649 0.0 3GC3-A nrPDB 441 e-124 1SUJ-A nrPDB 428 e-120 5TV1-A nrPDB 410 e-115 6BK9-A nrPDB 251 3e-67 2RIU-A nrPDB 32 0.39 4V4C-B nrPDB 28 5.9 3PB0-A nrPDB 28 5.9 >5W0P-A nrPDB Length = 906 Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/391 (97%), Positives = 383/391 (97%) Query: 2 AACGKTNKSHVIFKKVSRDKSVTIYLGKRDYVDHVSQVEPVDGVVLVDPELVKGKKVYVT 61 +A + SHVIFKKVSRDKSVTIYLGKRDYVDHVSQVEPVDGVVLVDPELVKGKKVYVT Sbjct: 516 SAGSAGSASHVIFKKVSRDKSVTIYLGKRDYVDHVSQVEPVDGVVLVDPELVKGKKVYVT 575 Query: 62 LTCAFRYGQEDIDVMGLTFRRDLYFSRVQVYPPVGAMSVLTQLQESLLKKLGDNTYPFLL 121 LTCAFRYGQEDIDVMGLTFRRDLYFSRVQVYPPVGAMSVLTQLQESLLKKLGDNTYPFLL Sbjct: 576 LTCAFRYGQEDIDVMGLTFRRDLYFSRVQVYPPVGAMSVLTQLQESLLKKLGDNTYPFLL 635 Query: 122 TFPDYLPCSVMLQPAPQDVGKSCGVDFEVKAFASDITDPEEDKIPKKSSVRLLIRKVQHA 181 TFPDYLPCSVMLQPAPQDVGKSCGVDFEVKAFASDITDPEEDKIPKKSSVRLLIRKVQHA Sbjct: 636 TFPDYLPCSVMLQPAPQDVGKSCGVDFEVKAFASDITDPEEDKIPKKSSVRLLIRKVQHA 695 Query: 182 PPEMGPQPSAEASWQFFMSDKPLNLSVSLSKEIYFHGEPIPVTVTVTNNTDKVVKKIKVS 241 PPEMGPQPSAEASWQFFMSDKPLNLSVSLSKEIYFHGEPIPVTVTVTNNTDKVVKKIKVS Sbjct: 696 PPEMGPQPSAEASWQFFMSDKPLNLSVSLSKEIYFHGEPIPVTVTVTNNTDKVVKKIKVS 755 Query: 242 VEQIANVVLYSSDYYVKPVASEETQEKVQPNSTLTKTLVLVPLLANNRERRGIALDGKIK 301 VEQIANVVLYSSDYYVKPVASEETQEKVQPNSTLTKTLVLVPLLANNRERRGIALDGKIK Sbjct: 756 VEQIANVVLYSSDYYVKPVASEETQEKVQPNSTLTKTLVLVPLLANNRERRGIALDGKIK 815 Query: 302 HEDTNLASSTIIKEGIDRTVMGILVSYHIKVKLTVSGFLGELTSSEVATEVPFRLMHPQP 361 HEDTNLASSTIIKEGIDRTVMGILVSYHIKVKLTVSGFLGELTSSEVATEVPFRLMHPQP Sbjct: 816 HEDTNLASSTIIKEGIDRTVMGILVSYHIKVKLTVSGFLGELTSSEVATEVPFRLMHPQP 875 Query: 362 EDPAKESVQDENLVFEEFARQNLKDTGENTE 392 EDPAKESVQDEN EEFARQNLKDTGENTE Sbjct: 876 EDPAKESVQDENAAAEEFARQNLKDTGENTE 906 >4J2Q-A nrPDB Length = 380 Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/368 (86%), Positives = 340/368 (92%), Gaps = 5/368 (1%) Query: 6 KTNK---SHVIFKKVSRDKSVTIYLGKRDYVDHVSQVEPVDGVVLVDPELVKGKKVYVTL 62 K NK +HVIFKK+SRDKSVTIYLGKRDY+DHV +VEPVDGVVLVDPELVKGK+VYV+L Sbjct: 12 KANKPAPNHVIFKKISRDKSVTIYLGKRDYIDHVERVEPVDGVVLVDPELVKGKRVYVSL 71 Query: 63 TCAFRYGQEDIDVMGLTFRRDLYFSRVQVYPPVGAMSVLTQLQESLLKKLGDNTYPFLLT 122 TCAFRYGQEDIDVMGL+FRRDLYFS+VQV+PPVGA T+LQESL+KKLG NTYPFLLT Sbjct: 72 TCAFRYGQEDIDVMGLSFRRDLYFSQVQVFPPVGASGATTRLQESLIKKLGANTYPFLLT 131 Query: 123 FPDYLPCSVMLQPAPQDVGKSCGVDFEVKAFASDITDPEEDKIPKKSSVRLLIRKVQHAP 182 FPDYLPCSVMLQPAPQDVGKSCGVDFE+KAFA+ TD EEDKIPKKSSVRLLIRKVQHAP Sbjct: 132 FPDYLPCSVMLQPAPQDVGKSCGVDFEIKAFATHSTDVEEDKIPKKSSVRLLIRKVQHAP 191 Query: 183 PEMGPQPSAEASWQFFMSDKPLNLSVSLSKEIYFHGEPIPVTVTVTNNTDKVVKKIKVSV 242 +MGPQP AEASWQFFMSDKPL L+VSLSKEIY+HGEPIPVTV VTN+T+K VKKIKV V Sbjct: 192 RDMGPQPRAEASWQFFMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLV 251 Query: 243 EQIANVVLYSSDYYVKPVASEETQEKVQPNSTLTKTLVLVPLLANNRERRGIALDGKIKH 302 EQ+ NVVLYSSDYY+K VA+EE QEKV PNS+LTKTL LVPLLANNRERRGIALDGKIKH Sbjct: 252 EQVTNVVLYSSDYYIKTVAAEEAQEKVPPNSSLTKTLTLVPLLANNRERRGIALDGKIKH 311 Query: 303 EDTNLASSTIIKEGIDRTVMGILVSYHIKVKLTVSGFLGELTSSEVATEVPFRLMHPQPE 362 EDTNLASSTIIKEGID+TVMGILVSY IKVKLTVSG LGELTSSEVATEVPFRLMHPQPE Sbjct: 312 EDTNLASSTIIKEGIDKTVMGILVSYQIKVKLTVSGLLGELTSSEVATEVPFRLMHPQPE 371 Query: 363 DP--AKES 368 DP AKES Sbjct: 372 DPDTAKES 379 >3GC3-A nrPDB Length = 385 Score = 441 bits (1135), Expect = e-124, Method: Compositional matrix adjust. Identities = 221/392 (56%), Positives = 284/392 (72%), Gaps = 27/392 (6%) Query: 8 NKSHVIFKKVSRDKSVTIYLGKRDYVDHVSQVEPVDGVVLVDPELVKGKKVYVTLTCAFR 67 +K +FKK S + +T+YLGKRD+VDH+ VEPVDGVVLVDPE +K ++VYVTLTCAFR Sbjct: 3 DKGTRVFKKASPNGKLTVYLGKRDFVDHIDLVEPVDGVVLVDPEYLKERRVYVTLTCAFR 62 Query: 68 YGQEDIDVMGLTFRRDLYFSRVQVYPPVGA-MSVLTQLQESLLKKLGDNTYPFLLTFPDY 126 YG+ED+DV+GLTFR+DL+ + VQ +PP LT+LQE L+KKLG++ YPF P Sbjct: 63 YGREDLDVLGLTFRKDLFVANVQSFPPAPEDKKPLTRLQERLIKKLGEHAYPFTFEIPPN 122 Query: 127 LPCSVMLQPAPQDVGKSCGVDFEVKAFASDITDPEEDKIPKKSSVRLLIRKVQHAPPEMG 186 LPCSV LQP P+D GK+CGVD+EVKAF ++ E+KI K++SVRL+IRKVQ+AP G Sbjct: 123 LPCSVTLQPGPEDTGKACGVDYEVKAFCAENL---EEKIHKRNSVRLVIRKVQYAPERPG 179 Query: 187 PQPSAEASWQFFMSDKPLNLSVSLSKEIYFHGEPIPVTVTVTNNTDKVVKKIKVSVEQIA 246 PQP+AE + QF MSDKPL+L SL KEIY+HGEPI V V VTNNT+K VKKIK+SV Q A Sbjct: 180 PQPTAETTRQFLMSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVRQYA 239 Query: 247 NVVLYSSDYYVKPVASEETQEKVQPNSTLTKTLVLVPLLANNRERRGIALDGKIKHEDTN 306 ++ L+++ Y PVA EE + V P+ST K L P LANNRE+RG+ALDGK+KHEDTN Sbjct: 240 DICLFNTAQYKCPVAMEEADDTVAPSSTFCKVYTLTPFLANNREKRGLALDGKLKHEDTN 299 Query: 307 LASSTIIKEGIDRTVMGILVSYHIKVKLTVSGFLGELTSSEVATEVPFRLMHPQP--EDP 364 LASST+++EG +R ++GI+VSY +KVKL VS +VA E+PF LMHP+P E P Sbjct: 300 LASSTLLREGANREILGIIVSYKVKVKLVVS------RGGDVAVELPFTLMHPKPKEEPP 353 Query: 365 AKE---------------SVQDENLVFEEFAR 381 +E D+++VFE+FAR Sbjct: 354 HREVPEHETPVDTNLIELDTNDDDIVFEDFAR 385 >1SUJ-A nrPDB Length = 392 Score = 428 bits (1100), Expect = e-120, Method: Compositional matrix adjust. Identities = 218/374 (58%), Positives = 281/374 (75%), Gaps = 8/374 (2%) Query: 13 IFKKVSRDKSVTIYLGKRDYVDHVSQVEPVDGVVLVDPELVKGKKVYVTLTCAFRYGQED 72 ++KK + ++IYLGKRD+VDHV VEPVDGVVL+DPE +K +KV+VTLTCAFRYG++D Sbjct: 7 VYKKTCPNAKLSIYLGKRDFVDHVEHVEPVDGVVLIDPEYLKDRKVFVTLTCAFRYGRDD 66 Query: 73 IDVMGLTFRRDLYFSRVQVYPPVGAMSVLTQLQESLLKKLGDNTYPFLLTFPDYLPCSVM 132 +D++G++FR+DLY QVYPP LT LQE L+KKLG + YPF LPCSV Sbjct: 67 LDLIGMSFRKDLYSLATQVYPP-ETKEPLTPLQEKLMKKLGAHAYPFCFKMGTNLPCSVT 125 Query: 133 LQPAPQDVGKSCGVDFEVKAFASDITDPEEDKIPKKSSVRLLIRKVQHAPPEMGPQPSAE 192 LQP P D GKSCGVDFEVKAF ++ E+KI K++SV+L+IRKVQ AP +G P E Sbjct: 126 LQPGPDDTGKSCGVDFEVKAFCAENL---EEKIHKRNSVQLVIRKVQFAPANLGVAPKTE 182 Query: 193 ASWQFFMSDKPLNLSVSLSKEIYFHGEPIPVTVTVTNNTDKVVKKIKVSVEQIANVVLYS 252 + QF +SD+PL+L SL KEIY+HGEPI V V + N T K+VKKIK+ VEQ+ +VVL+S Sbjct: 183 ITRQFMLSDRPLHLEASLDKEIYYHGEPINVNVKINNTTGKIVKKIKIIVEQVTDVVLFS 242 Query: 253 SDYYVKPVASEETQEKVQPNSTLTKTLVLVPLLANNRERRGIALDGKIKHEDTNLASSTI 312 D YVK V +EET + V NSTL+KT + P+LANNRE+RG+ALDGK+KHEDTNLAS+T+ Sbjct: 243 LDKYVKTVCAEETNDTVAANSTLSKTFSVTPMLANNREKRGLALDGKLKHEDTNLASTTV 302 Query: 313 IKEGIDRTVMGILVSYHIKVKLTVS--GFLGELTSSEVATEVPFRLMHPQPEDPAKESVQ 370 I+ G+D+ V+GILVSY +KV L V+ G LG+LTSS+VA E+P LMHP+P D S Sbjct: 303 IRPGMDKEVLGILVSYKVKVHLVVARGGILGDLTSSDVAVELPLTLMHPKPSDDKPRS-- 360 Query: 371 DENLVFEEFARQNL 384 +E+++ EEFARQ L Sbjct: 361 EEDIIIEEFARQKL 374 >5TV1-A nrPDB Length = 393 Score = 410 bits (1054), Expect = e-115, Method: Compositional matrix adjust. Identities = 209/394 (53%), Positives = 275/394 (69%), Gaps = 34/394 (8%) Query: 13 IFKKVSRDKSVTIYLGKRDYVDHVSQVEPVDGVVLVDPELVKGKKVYVTLTCAFRYGQED 72 +FKK S + +T+YLGKRD+VDH+ +V+PVDGVVLVDP+ +K +KV+VTLTCAFRYG+ED Sbjct: 9 VFKKSSPNCKLTVYLGKRDFVDHLDKVDPVDGVVLVDPDYLKDRKVFVTLTCAFRYGRED 68 Query: 73 IDVMGLTFRRDLYFSRVQVYPPVGAMSVLTQ-LQESLLKKLGDNTYPFLLTFPDYLPCSV 131 +DV+GL+FR+DL+ + Q +PP LQE LL+KLG + +PF T P LPCSV Sbjct: 69 LDVLGLSFRKDLFIANYQAFPPTPNPPRPPTRLQERLLRKLGQHAHPFFFTIPQNLPCSV 128 Query: 132 MLQPAPQDVGKSCGVDFEVKAFASDITDPEEDKIPKKSSVRLLIRKVQHAPPEMGPQPSA 191 LQP P+D GK+CGVDFE++AF + E+K K++SVRL+IRKVQ AP + GPQPSA Sbjct: 129 TLQPGPEDTGKACGVDFEIRAFCAKSL---EEKSHKRNSVRLVIRKVQFAPEKPGPQPSA 185 Query: 192 EASWQFFMSDKPLNLSVSLSKEIYFHGEPIPVTVTVTNNTDKVVKKIKVSVEQIANVVLY 251 E + F MSD+ L+L SL KE+Y+HGEP+ V V VTNN+ K VKKIKVSV Q A++ L+ Sbjct: 186 ETTRHFLMSDRSLHLEASLDKELYYHGEPLNVNVHVTNNSTKTVKKIKVSVRQYADICLF 245 Query: 252 SSDYYVKPVASEETQEKVQPNSTLTKTLVLVPLLANNRERRGIALDGKIKHEDTNLASST 311 S+ Y PVA E ++V P+ST K + PLL+NNRE+RG+ALDGK+KHEDTNLASST Sbjct: 246 STAQYKCPVAQVEQDDQVSPSSTFCKVYTITPLLSNNREKRGLALDGKLKHEDTNLASST 305 Query: 312 IIKEGIDRTVMGILVSYHIKVKLTVSGFLGELTSSEVATEVPFRLMHPQPED----PAKE 367 I+KEG ++ V+GILVSY +KVKL VS +V+ E+PF LMHP+P D P + Sbjct: 306 IVKEGANKEVLGILVSYRVKVKLVVS------RGGDVSVELPFVLMHPKPHDHIALPRPQ 359 Query: 368 S--------------------VQDENLVFEEFAR 381 S D+++VFE+FAR Sbjct: 360 SAVPETDAPVDTNLIEFETNYATDDDIVFEDFAR 393 >6BK9-A nrPDB Length = 380 Score = 251 bits (642), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 140/356 (39%), Positives = 212/356 (59%), Gaps = 12/356 (3%) Query: 5 GKTNKSHVIFKKVSRDKSVTIYLGKRDYVDHVSQVEPVDGVVLVDPELVKGKKVYVTLTC 64 G K ++KK S + +T YL KRDY DH + +DGV +VDP+ +K +KV+ + Sbjct: 12 GMVTKKAKVYKKASPNGKLTTYLAKRDYYDHKEWQDNIDGVCVVDPDYLKNRKVFGLIVV 71 Query: 65 AFRYGQEDIDVMGLTFRRDLYFSRVQVYPPVGA-MSVLTQLQESLLKKLGDNTYPFLLTF 123 AFRYG+ED+DVMG++FR+D ++Q+YPP+ LT+LQ LL KLG+N PF Sbjct: 72 AFRYGREDMDVMGVSFRKDFAVKQMQIYPPLEENQRPLTKLQAKLLNKLGENAVPFHYDL 131 Query: 124 PDYLPCSVMLQPAPQDVGKSCGVDFEVKAFASDITDPEEDKIPKKSSVRLLIRKVQHAPP 183 P P +V +QP+ D G CGVD++V + S D DKI K++SV L IRK+ + Sbjct: 132 PTNTPDTVCIQPSEYDGGAPCGVDYQVTTYVSQNMD---DKIHKRNSVSLSIRKLSYFEF 188 Query: 184 EMGPQPSAEASWQFFMSDKPLNLSVSLSKEIYFHGEPIPVTVTVTNNTDKVVKKIKVSVE 243 QP E S +F + + L +L K Y+ GE + ++V V N T K K+IK+ + Sbjct: 189 GSDEQPRGEISKEFKFTSGAMKLECTLDKARYYSGESMNISVCVDNPTSKKAKRIKIQII 248 Query: 244 QIANVVLYSSDYYVKPVASEETQEK--VQPN-STLTKTLVLVPLLANNRERRGIALDGKI 300 Q+A++ LY + Y V ET+E ++PN S + L P+L + R G+AL+GK+ Sbjct: 249 QLADICLYETVTYKSVVTELETEEGFPIEPNTSGFCQVYKLRPVLEVTKRRAGLALNGKV 308 Query: 301 KHEDTNLASSTIIKEGIDRTVMGILVSYHIKVKLTVSGFLGELTSSEVATEVPFRL 356 K+EDT LA+ST +D+ +G++VSY +++K+T+ GF S ++ EVPF+L Sbjct: 309 KYEDTMLAASTEDAGNVDKENLGVVVSYKVRIKMTL-GF----GSGDMLLEVPFKL 359 >2RIU-A nrPDB Length = 204 Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust. Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 11/67 (16%) Query: 229 NNTDKVVKKIKVSVEQIANVVLYSSDYYVKPVASEETQEKVQPNSTLTKTLVLVPLLANN 288 N D ++ ++ E++A +V YSS Y P++ E + L L P+LAN Sbjct: 31 NEGDLIMAAELITQEKMAFLVRYSSGYVCVPLSEERANQ-----------LELPPMLANR 79 Query: 289 RERRGIA 295 +R G A Sbjct: 80 SDRHGTA 86 >4V4C-B nrPDB Length = 274 Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust. Identities = 11/15 (73%), Positives = 13/15 (86%) Query: 43 DGVVLVDPELVKGKK 57 DG+VL+DPE KGKK Sbjct: 89 DGIVLIDPEKAKGKK 103 >3PB0-A nrPDB Length = 300 Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Query: 221 IPVTVTV-TNNTDKVVKKIKVSVEQIANVVLYSSDYYVKP 259 IPV V TN+T+K +K +K + + AN VL + YY KP Sbjct: 76 IPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYYNKP 115 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 5W0P-A nrPDB 669 0.0 3GC3-A nrPDB 601 e-172 4J2Q-A nrPDB 598 e-171 5TV1-A nrPDB 574 e-164 1SUJ-A nrPDB 574 e-164 6BK9-A nrPDB 506 e-144 Sequences not found previously or not previously below threshold: 2ONJ-A nrPDB 30 2.0 3T99-A nrPDB 28 5.1 CONVERGED! >5W0P-A nrPDB Length = 906 Score = 669 bits (1727), Expect = 0.0, Method: Composition-based stats. Identities = 379/382 (99%), Positives = 379/382 (99%) Query: 11 HVIFKKVSRDKSVTIYLGKRDYVDHVSQVEPVDGVVLVDPELVKGKKVYVTLTCAFRYGQ 70 HVIFKKVSRDKSVTIYLGKRDYVDHVSQVEPVDGVVLVDPELVKGKKVYVTLTCAFRYGQ Sbjct: 525 HVIFKKVSRDKSVTIYLGKRDYVDHVSQVEPVDGVVLVDPELVKGKKVYVTLTCAFRYGQ 584 Query: 71 EDIDVMGLTFRRDLYFSRVQVYPPVGAMSVLTQLQESLLKKLGDNTYPFLLTFPDYLPCS 130 EDIDVMGLTFRRDLYFSRVQVYPPVGAMSVLTQLQESLLKKLGDNTYPFLLTFPDYLPCS Sbjct: 585 EDIDVMGLTFRRDLYFSRVQVYPPVGAMSVLTQLQESLLKKLGDNTYPFLLTFPDYLPCS 644 Query: 131 VMLQPAPQDVGKSCGVDFEVKAFASDITDPEEDKIPKKSSVRLLIRKVQHAPPEMGPQPS 190 VMLQPAPQDVGKSCGVDFEVKAFASDITDPEEDKIPKKSSVRLLIRKVQHAPPEMGPQPS Sbjct: 645 VMLQPAPQDVGKSCGVDFEVKAFASDITDPEEDKIPKKSSVRLLIRKVQHAPPEMGPQPS 704 Query: 191 AEASWQFFMSDKPLNLSVSLSKEIYFHGEPIPVTVTVTNNTDKVVKKIKVSVEQIANVVL 250 AEASWQFFMSDKPLNLSVSLSKEIYFHGEPIPVTVTVTNNTDKVVKKIKVSVEQIANVVL Sbjct: 705 AEASWQFFMSDKPLNLSVSLSKEIYFHGEPIPVTVTVTNNTDKVVKKIKVSVEQIANVVL 764 Query: 251 YSSDYYVKPVASEETQEKVQPNSTLTKTLVLVPLLANNRERRGIALDGKIKHEDTNLASS 310 YSSDYYVKPVASEETQEKVQPNSTLTKTLVLVPLLANNRERRGIALDGKIKHEDTNLASS Sbjct: 765 YSSDYYVKPVASEETQEKVQPNSTLTKTLVLVPLLANNRERRGIALDGKIKHEDTNLASS 824 Query: 311 TIIKEGIDRTVMGILVSYHIKVKLTVSGFLGELTSSEVATEVPFRLMHPQPEDPAKESVQ 370 TIIKEGIDRTVMGILVSYHIKVKLTVSGFLGELTSSEVATEVPFRLMHPQPEDPAKESVQ Sbjct: 825 TIIKEGIDRTVMGILVSYHIKVKLTVSGFLGELTSSEVATEVPFRLMHPQPEDPAKESVQ 884 Query: 371 DENLVFEEFARQNLKDTGENTE 392 DEN EEFARQNLKDTGENTE Sbjct: 885 DENAAAEEFARQNLKDTGENTE 906 >3GC3-A nrPDB Length = 385 Score = 601 bits (1550), Expect = e-172, Method: Composition-based stats. Identities = 221/394 (56%), Positives = 284/394 (72%), Gaps = 27/394 (6%) Query: 6 KTNKSHVIFKKVSRDKSVTIYLGKRDYVDHVSQVEPVDGVVLVDPELVKGKKVYVTLTCA 65 +K +FKK S + +T+YLGKRD+VDH+ VEPVDGVVLVDPE +K ++VYVTLTCA Sbjct: 1 MGDKGTRVFKKASPNGKLTVYLGKRDFVDHIDLVEPVDGVVLVDPEYLKERRVYVTLTCA 60 Query: 66 FRYGQEDIDVMGLTFRRDLYFSRVQVYPPVGA-MSVLTQLQESLLKKLGDNTYPFLLTFP 124 FRYG+ED+DV+GLTFR+DL+ + VQ +PP LT+LQE L+KKLG++ YPF P Sbjct: 61 FRYGREDLDVLGLTFRKDLFVANVQSFPPAPEDKKPLTRLQERLIKKLGEHAYPFTFEIP 120 Query: 125 DYLPCSVMLQPAPQDVGKSCGVDFEVKAFASDITDPEEDKIPKKSSVRLLIRKVQHAPPE 184 LPCSV LQP P+D GK+CGVD+EVKAF ++ E+KI K++SVRL+IRKVQ+AP Sbjct: 121 PNLPCSVTLQPGPEDTGKACGVDYEVKAFCAENL---EEKIHKRNSVRLVIRKVQYAPER 177 Query: 185 MGPQPSAEASWQFFMSDKPLNLSVSLSKEIYFHGEPIPVTVTVTNNTDKVVKKIKVSVEQ 244 GPQP+AE + QF MSDKPL+L SL KEIY+HGEPI V V VTNNT+K VKKIK+SV Q Sbjct: 178 PGPQPTAETTRQFLMSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVRQ 237 Query: 245 IANVVLYSSDYYVKPVASEETQEKVQPNSTLTKTLVLVPLLANNRERRGIALDGKIKHED 304 A++ L+++ Y PVA EE + V P+ST K L P LANNRE+RG+ALDGK+KHED Sbjct: 238 YADICLFNTAQYKCPVAMEEADDTVAPSSTFCKVYTLTPFLANNREKRGLALDGKLKHED 297 Query: 305 TNLASSTIIKEGIDRTVMGILVSYHIKVKLTVSGFLGELTSSEVATEVPFRLMHPQP--E 362 TNLASST+++EG +R ++GI+VSY +KVKL VS +VA E+PF LMHP+P E Sbjct: 298 TNLASSTLLREGANREILGIIVSYKVKVKLVVS------RGGDVAVELPFTLMHPKPKEE 351 Query: 363 DPAKE---------------SVQDENLVFEEFAR 381 P +E D+++VFE+FAR Sbjct: 352 PPHREVPEHETPVDTNLIELDTNDDDIVFEDFAR 385 >4J2Q-A nrPDB Length = 380 Score = 598 bits (1542), Expect = e-171, Method: Composition-based stats. Identities = 314/362 (86%), Positives = 337/362 (93%), Gaps = 2/362 (0%) Query: 10 SHVIFKKVSRDKSVTIYLGKRDYVDHVSQVEPVDGVVLVDPELVKGKKVYVTLTCAFRYG 69 +HVIFKK+SRDKSVTIYLGKRDY+DHV +VEPVDGVVLVDPELVKGK+VYV+LTCAFRYG Sbjct: 19 NHVIFKKISRDKSVTIYLGKRDYIDHVERVEPVDGVVLVDPELVKGKRVYVSLTCAFRYG 78 Query: 70 QEDIDVMGLTFRRDLYFSRVQVYPPVGAMSVLTQLQESLLKKLGDNTYPFLLTFPDYLPC 129 QEDIDVMGL+FRRDLYFS+VQV+PPVGA T+LQESL+KKLG NTYPFLLTFPDYLPC Sbjct: 79 QEDIDVMGLSFRRDLYFSQVQVFPPVGASGATTRLQESLIKKLGANTYPFLLTFPDYLPC 138 Query: 130 SVMLQPAPQDVGKSCGVDFEVKAFASDITDPEEDKIPKKSSVRLLIRKVQHAPPEMGPQP 189 SVMLQPAPQDVGKSCGVDFE+KAFA+ TD EEDKIPKKSSVRLLIRKVQHAP +MGPQP Sbjct: 139 SVMLQPAPQDVGKSCGVDFEIKAFATHSTDVEEDKIPKKSSVRLLIRKVQHAPRDMGPQP 198 Query: 190 SAEASWQFFMSDKPLNLSVSLSKEIYFHGEPIPVTVTVTNNTDKVVKKIKVSVEQIANVV 249 AEASWQFFMSDKPL L+VSLSKEIY+HGEPIPVTV VTN+T+K VKKIKV VEQ+ NVV Sbjct: 199 RAEASWQFFMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVV 258 Query: 250 LYSSDYYVKPVASEETQEKVQPNSTLTKTLVLVPLLANNRERRGIALDGKIKHEDTNLAS 309 LYSSDYY+K VA+EE QEKV PNS+LTKTL LVPLLANNRERRGIALDGKIKHEDTNLAS Sbjct: 259 LYSSDYYIKTVAAEEAQEKVPPNSSLTKTLTLVPLLANNRERRGIALDGKIKHEDTNLAS 318 Query: 310 STIIKEGIDRTVMGILVSYHIKVKLTVSGFLGELTSSEVATEVPFRLMHPQPEDP--AKE 367 STIIKEGID+TVMGILVSY IKVKLTVSG LGELTSSEVATEVPFRLMHPQPEDP AKE Sbjct: 319 STIIKEGIDKTVMGILVSYQIKVKLTVSGLLGELTSSEVATEVPFRLMHPQPEDPDTAKE 378 Query: 368 SV 369 S Sbjct: 379 SA 380 >5TV1-A nrPDB Length = 393 Score = 574 bits (1480), Expect = e-164, Method: Composition-based stats. Identities = 209/397 (52%), Positives = 275/397 (69%), Gaps = 34/397 (8%) Query: 10 SHVIFKKVSRDKSVTIYLGKRDYVDHVSQVEPVDGVVLVDPELVKGKKVYVTLTCAFRYG 69 +FKK S + +T+YLGKRD+VDH+ +V+PVDGVVLVDP+ +K +KV+VTLTCAFRYG Sbjct: 6 GTRVFKKSSPNCKLTVYLGKRDFVDHLDKVDPVDGVVLVDPDYLKDRKVFVTLTCAFRYG 65 Query: 70 QEDIDVMGLTFRRDLYFSRVQVYPPVGAMSVLTQ-LQESLLKKLGDNTYPFLLTFPDYLP 128 +ED+DV+GL+FR+DL+ + Q +PP LQE LL+KLG + +PF T P LP Sbjct: 66 REDLDVLGLSFRKDLFIANYQAFPPTPNPPRPPTRLQERLLRKLGQHAHPFFFTIPQNLP 125 Query: 129 CSVMLQPAPQDVGKSCGVDFEVKAFASDITDPEEDKIPKKSSVRLLIRKVQHAPPEMGPQ 188 CSV LQP P+D GK+CGVDFE++AF + E+K K++SVRL+IRKVQ AP + GPQ Sbjct: 126 CSVTLQPGPEDTGKACGVDFEIRAFCAKSL---EEKSHKRNSVRLVIRKVQFAPEKPGPQ 182 Query: 189 PSAEASWQFFMSDKPLNLSVSLSKEIYFHGEPIPVTVTVTNNTDKVVKKIKVSVEQIANV 248 PSAE + F MSD+ L+L SL KE+Y+HGEP+ V V VTNN+ K VKKIKVSV Q A++ Sbjct: 183 PSAETTRHFLMSDRSLHLEASLDKELYYHGEPLNVNVHVTNNSTKTVKKIKVSVRQYADI 242 Query: 249 VLYSSDYYVKPVASEETQEKVQPNSTLTKTLVLVPLLANNRERRGIALDGKIKHEDTNLA 308 L+S+ Y PVA E ++V P+ST K + PLL+NNRE+RG+ALDGK+KHEDTNLA Sbjct: 243 CLFSTAQYKCPVAQVEQDDQVSPSSTFCKVYTITPLLSNNREKRGLALDGKLKHEDTNLA 302 Query: 309 SSTIIKEGIDRTVMGILVSYHIKVKLTVSGFLGELTSSEVATEVPFRLMHPQPED----P 364 SSTI+KEG ++ V+GILVSY +KVKL VS +V+ E+PF LMHP+P D P Sbjct: 303 SSTIVKEGANKEVLGILVSYRVKVKLVVS------RGGDVSVELPFVLMHPKPHDHIALP 356 Query: 365 AKES--------------------VQDENLVFEEFAR 381 +S D+++VFE+FAR Sbjct: 357 RPQSAVPETDAPVDTNLIEFETNYATDDDIVFEDFAR 393 >1SUJ-A nrPDB Length = 392 Score = 574 bits (1479), Expect = e-164, Method: Composition-based stats. Identities = 218/377 (57%), Positives = 281/377 (74%), Gaps = 8/377 (2%) Query: 10 SHVIFKKVSRDKSVTIYLGKRDYVDHVSQVEPVDGVVLVDPELVKGKKVYVTLTCAFRYG 69 ++KK + ++IYLGKRD+VDHV VEPVDGVVL+DPE +K +KV+VTLTCAFRYG Sbjct: 4 GSKVYKKTCPNAKLSIYLGKRDFVDHVEHVEPVDGVVLIDPEYLKDRKVFVTLTCAFRYG 63 Query: 70 QEDIDVMGLTFRRDLYFSRVQVYPPVGAMSVLTQLQESLLKKLGDNTYPFLLTFPDYLPC 129 ++D+D++G++FR+DLY QVYPP LT LQE L+KKLG + YPF LPC Sbjct: 64 RDDLDLIGMSFRKDLYSLATQVYPP-ETKEPLTPLQEKLMKKLGAHAYPFCFKMGTNLPC 122 Query: 130 SVMLQPAPQDVGKSCGVDFEVKAFASDITDPEEDKIPKKSSVRLLIRKVQHAPPEMGPQP 189 SV LQP P D GKSCGVDFEVKAF ++ E+KI K++SV+L+IRKVQ AP +G P Sbjct: 123 SVTLQPGPDDTGKSCGVDFEVKAFCAENL---EEKIHKRNSVQLVIRKVQFAPANLGVAP 179 Query: 190 SAEASWQFFMSDKPLNLSVSLSKEIYFHGEPIPVTVTVTNNTDKVVKKIKVSVEQIANVV 249 E + QF +SD+PL+L SL KEIY+HGEPI V V + N T K+VKKIK+ VEQ+ +VV Sbjct: 180 KTEITRQFMLSDRPLHLEASLDKEIYYHGEPINVNVKINNTTGKIVKKIKIIVEQVTDVV 239 Query: 250 LYSSDYYVKPVASEETQEKVQPNSTLTKTLVLVPLLANNRERRGIALDGKIKHEDTNLAS 309 L+S D YVK V +EET + V NSTL+KT + P+LANNRE+RG+ALDGK+KHEDTNLAS Sbjct: 240 LFSLDKYVKTVCAEETNDTVAANSTLSKTFSVTPMLANNREKRGLALDGKLKHEDTNLAS 299 Query: 310 STIIKEGIDRTVMGILVSYHIKVKLTVS--GFLGELTSSEVATEVPFRLMHPQPEDPAKE 367 +T+I+ G+D+ V+GILVSY +KV L V+ G LG+LTSS+VA E+P LMHP+P D Sbjct: 300 TTVIRPGMDKEVLGILVSYKVKVHLVVARGGILGDLTSSDVAVELPLTLMHPKPSDDKPR 359 Query: 368 SVQDENLVFEEFARQNL 384 S +E+++ EEFARQ L Sbjct: 360 S--EEDIIIEEFARQKL 374 >6BK9-A nrPDB Length = 380 Score = 506 bits (1302), Expect = e-144, Method: Composition-based stats. Identities = 138/356 (38%), Positives = 210/356 (58%), Gaps = 12/356 (3%) Query: 5 GKTNKSHVIFKKVSRDKSVTIYLGKRDYVDHVSQVEPVDGVVLVDPELVKGKKVYVTLTC 64 G K ++KK S + +T YL KRDY DH + +DGV +VDP+ +K +KV+ + Sbjct: 12 GMVTKKAKVYKKASPNGKLTTYLAKRDYYDHKEWQDNIDGVCVVDPDYLKNRKVFGLIVV 71 Query: 65 AFRYGQEDIDVMGLTFRRDLYFSRVQVYPPVGA-MSVLTQLQESLLKKLGDNTYPFLLTF 123 AFRYG+ED+DVMG++FR+D ++Q+YPP+ LT+LQ LL KLG+N PF Sbjct: 72 AFRYGREDMDVMGVSFRKDFAVKQMQIYPPLEENQRPLTKLQAKLLNKLGENAVPFHYDL 131 Query: 124 PDYLPCSVMLQPAPQDVGKSCGVDFEVKAFASDITDPEEDKIPKKSSVRLLIRKVQHAPP 183 P P +V +QP+ D G CGVD++V + S D DKI K++SV L IRK+ + Sbjct: 132 PTNTPDTVCIQPSEYDGGAPCGVDYQVTTYVSQNMD---DKIHKRNSVSLSIRKLSYFEF 188 Query: 184 EMGPQPSAEASWQFFMSDKPLNLSVSLSKEIYFHGEPIPVTVTVTNNTDKVVKKIKVSVE 243 QP E S +F + + L +L K Y+ GE + ++V V N T K K+IK+ + Sbjct: 189 GSDEQPRGEISKEFKFTSGAMKLECTLDKARYYSGESMNISVCVDNPTSKKAKRIKIQII 248 Query: 244 QIANVVLYSSDYYVKPVASEETQEK--VQPN-STLTKTLVLVPLLANNRERRGIALDGKI 300 Q+A++ LY + Y V ET+E ++PN S + L P+L + R G+AL+GK+ Sbjct: 249 QLADICLYETVTYKSVVTELETEEGFPIEPNTSGFCQVYKLRPVLEVTKRRAGLALNGKV 308 Query: 301 KHEDTNLASSTIIKEGIDRTVMGILVSYHIKVKLTVSGFLGELTSSEVATEVPFRL 356 K+EDT LA+ST +D+ +G++VSY +++K+T+ S ++ EVPF+L Sbjct: 309 KYEDTMLAASTEDAGNVDKENLGVVVSYKVRIKMTLG-----FGSGDMLLEVPFKL 359 >2ONJ-A nrPDB Length = 578 Score = 30.0 bits (66), Expect = 2.0, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 26/63 (41%) Query: 188 QPSAEASWQFFMSDKPLNLSVSLSKEIYFHGEPIPVTVTVTNNTDKVVKKIKVSVEQIAN 247 +P E Q+ + + K++Y H + + N +V+ ++ VEQ + Sbjct: 74 RPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKD 133 Query: 248 VVL 250 +L Sbjct: 134 FIL 136 >3T99-A nrPDB Length = 334 Score = 28.5 bits (62), Expect = 5.1, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 27/54 (50%) Query: 250 LYSSDYYVKPVASEETQEKVQPNSTLTKTLVLVPLLANNRERRGIALDGKIKHE 303 +YS + V+ S +E + + T K + P A+ R+ ALDGK++ + Sbjct: 189 VYSPESNVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERD 242 Database: ../databases/nrPDB-GO_2019.06.18_sequences.fasta Posted date: Jan 3, 2023 9:05 PM Number of letters in database: 10,336,785 Number of sequences in database: 36,641 Lambda K H 0.308 0.133 0.361 Lambda K H 0.267 0.0405 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,606,214 Number of Sequences: 36641 Number of extensions: 570482 Number of successful extensions: 1174 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 1124 Number of HSP's gapped (non-prelim): 22 length of query: 403 length of database: 10,336,785 effective HSP length: 99 effective length of query: 304 effective length of database: 6,709,326 effective search space: 2039635104 effective search space used: 2039635104 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits) S2: 60 (27.7 bits)